RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

run_metadata

1,093 rows where experiment.library_source = "TRANSCRIPTOMIC", technology = "unknown" and tissue_curation = "Fin"

✎ View and edit SQL

This data as json, CSV (advanced)

devstage_curation 7

experiment.library_selection 6

devstage_curation_coarse 6

experiment.platform 4

experiment.library_layout 2

tissue_curation_coarse 1

tissue_curation 1

  • Fin · 1,093 ✖

technology 1

  • unknown · 1,093 ✖

experiment.library_strategy 1

experiment.library_source 1

  • TRANSCRIPTOMIC · 1,093 ✖
Link rowid ▼ run.accession experiment.accession sample.accession study.accession bioproject study.title study.alias study.type study.abstract study.attributes study.PMIDs sample.description sample.title sample.alias sample.centername sample.attributes GEOsample.title GEOsample.dataprocessing GEOsample.source GEOsample.treatmentprotocol GEOsample.extractprotocol GEOsample.growthprotocol GEOsample.characteristics GEOsample.accession experiment.title experiment.alias experiment.library_name experiment.design_description experiment.library_construction_protocol experiment.attributes experiment.library_strategy experiment.library_source experiment.library_selection experiment.library_layout experiment.platform experiment.instrument_model experiment.spot_descriptor experiment.study_ref run.title run.attributes run.filename run.semantic_name run.total_bases run.total_spots run.alias run.read_lengths run.base_counts run.r1_length run.r2_length run.r3_length run.r4_length run.Acount run.Ccount run.Gcount run.Tcount run.Ncount run.experiment run.pool_member submission.accession submission.srasource submission.bioprojectsource seqdetective.n_mates seqdetective.mapping_rate.mate1 seqdetective.mapping_rate.mate2 seqdetective.nofeature_rate.mate1 seqdetective.nofeature_rate.mate2 seqdetective.sparsity.mate1 seqdetective.sparsity.mate2 seqdetective.pos_strand_rate.mate1 seqdetective.pos_strand_rate.mate2 seqdetective.readlen.mate1 seqdetective.readlen.mate2 seqdetective.judgement.mate1 seqdetective.judgement.mate2 seqdetective.judgement.reason platform_family instrument_generation read_bias selection_class prep_kit sc_or_bulk tech_class technology tech_variant submission.bioprojectsource.country earliest_date devstage_curation devstage_curation_coarse tissue_curation tissue_curation_coarse
95 95 DRR050167 DRX045209 DRS025834 DRP003043 PRJDB4416 Transcriptome analysis in ES1 expressing rods of zebrafish DRP003043 Transcriptome Analysis Transcriptome analysis using next generation sequencing system for isolated rods from zebrafish of wild type T?bingen long fin TL line. Transgenic zebrafish expressing ES1 and/or EGFP in rods were used.     Zebrafish rods expressing ES1 and EGFP ES1 3 SAMD00044057   sample name:ES1 EGFP rod 003|strain:Tubingen long fin|cell type:rod                 Ion Torrent PGM sequencing of SAMD00044057 DRX045209 1 1 1   RNA-Seq TRANSCRIPTOMIC cDNA SINGLE ION_TORRENT Ion Torrent PGM <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>105</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003043 Ion Torrent PGM sequencing of SAMD00044057       371748120.0 3469843.0 DRR050167 0:107.14 A:107190409;C:79475572;G:83520360;T:101561779;N:0 107       107190409 79475572 83520360 101561779 0 DRX045209 DRS025834 DRA004229 OSAKA_FB|Kawamura lab., Frontier Biology, Osaka univ. Osaka university 1 0.81026   0.26715   0.86953   0.52321   51   B   usable mapping rate ion_torrent ion_torrent unknown cdna_unspecified unknown bulk unknown unknown   Japan 2016-03-09 Undetermined Undetermined Fin Surface Structure
96 96 DRR050166 DRX045208 DRS025833 DRP003043 PRJDB4416 Transcriptome analysis in ES1 expressing rods of zebrafish DRP003043 Transcriptome Analysis Transcriptome analysis using next generation sequencing system for isolated rods from zebrafish of wild type T?bingen long fin TL line. Transgenic zebrafish expressing ES1 and/or EGFP in rods were used.     Zebrafish rods expressing ES1 and EGFP ES1 2 SAMD00044056   sample name:ES1 EGFP rod 002|strain:Tubingen long fin|cell type:rod                 Ion Torrent PGM sequencing of SAMD00044056 DRX045208 1 1 1   RNA-Seq TRANSCRIPTOMIC cDNA SINGLE ION_TORRENT Ion Torrent PGM <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>128</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003043 Ion Torrent PGM sequencing of SAMD00044056       425549011.0 3275261.0 DRR050166 0:129.93 A:126640704;C:86415371;G:90822163;T:121670773;N:0 129       126640704 86415371 90822163 121670773 0 DRX045208 DRS025833 DRA004229 OSAKA_FB|Kawamura lab., Frontier Biology, Osaka univ. Osaka university 1 0.80223   0.31429   0.85861   0.5272   57   B   usable mapping rate ion_torrent ion_torrent unknown cdna_unspecified unknown bulk unknown unknown   Japan 2016-03-09 Undetermined Undetermined Fin Surface Structure
97 97 DRR050165 DRX045207 DRS025832 DRP003043 PRJDB4416 Transcriptome analysis in ES1 expressing rods of zebrafish DRP003043 Transcriptome Analysis Transcriptome analysis using next generation sequencing system for isolated rods from zebrafish of wild type T?bingen long fin TL line. Transgenic zebrafish expressing ES1 and/or EGFP in rods were used.     Zebrafish rods expressing ES1 and EGFP ES1 1 SAMD00044055   sample name:ES1 EGFP rod 001|strain:Tubingen long fin|cell type:rod                 Ion Torrent PGM sequencing of SAMD00044055 DRX045207 1 1 1   RNA-Seq TRANSCRIPTOMIC cDNA SINGLE ION_TORRENT Ion Torrent PGM <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>147</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003043 Ion Torrent PGM sequencing of SAMD00044055       584599765.0 3941083.0 DRR050165 0:148.33 A:164329030;C:129885620;G:136727379;T:153657736;N:0 148       164329030 129885620 136727379 153657736 0 DRX045207 DRS025832 DRA004229 OSAKA_FB|Kawamura lab., Frontier Biology, Osaka univ. Osaka university 1 0.83769   0.25395   0.83116   0.52784   185   B   usable mapping rate ion_torrent ion_torrent unknown cdna_unspecified unknown bulk unknown unknown   Japan 2016-03-09 Undetermined Undetermined Fin Surface Structure
98 98 DRR050164 DRX045206 DRS025831 DRP003043 PRJDB4416 Transcriptome analysis in ES1 expressing rods of zebrafish DRP003043 Transcriptome Analysis Transcriptome analysis using next generation sequencing system for isolated rods from zebrafish of wild type T?bingen long fin TL line. Transgenic zebrafish expressing ES1 and/or EGFP in rods were used.     Zebrafish rods expressing EGFP EGFP 3 SAMD00044054   sample name:EGFP rod 003|strain:Tubingen long fin|cell type:rod                 Ion Torrent PGM sequencing of SAMD00044054 DRX045206 1 1 1   RNA-Seq TRANSCRIPTOMIC cDNA SINGLE ION_TORRENT Ion Torrent PGM <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>88</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003043 Ion Torrent PGM sequencing of SAMD00044054       343014114.0 3827762.0 DRR050164 0:89.61 A:99421434;C:73070267;G:77738821;T:92783592;N:0 89       99421434 73070267 77738821 92783592 0 DRX045206 DRS025831 DRA004229 OSAKA_FB|Kawamura lab., Frontier Biology, Osaka univ. Osaka university 1 0.78953   0.25529   0.87367   0.52148   24   B   usable mapping rate ion_torrent ion_torrent unknown cdna_unspecified unknown bulk unknown unknown   Japan 2016-03-09 Undetermined Undetermined Fin Surface Structure
99 99 DRR050163 DRX045205 DRS025830 DRP003043 PRJDB4416 Transcriptome analysis in ES1 expressing rods of zebrafish DRP003043 Transcriptome Analysis Transcriptome analysis using next generation sequencing system for isolated rods from zebrafish of wild type T?bingen long fin TL line. Transgenic zebrafish expressing ES1 and/or EGFP in rods were used.     Zebrafish rods expressing EGFP EGFP 2 SAMD00044053   sample name:EGFP rod 002|strain:Tubingen long fin|cell type:rod                 Ion Torrent PGM sequencing of SAMD00044053 DRX045205 1 1 1   RNA-Seq TRANSCRIPTOMIC cDNA SINGLE ION_TORRENT Ion Torrent PGM <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>137</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003043 Ion Torrent PGM sequencing of SAMD00044053       533069427.0 3824140.0 DRR050163 0:139.40 A:152608173;C:113928273;G:120051739;T:146481242;N:0 139       152608173 113928273 120051739 146481242 0 DRX045205 DRS025830 DRA004229 OSAKA_FB|Kawamura lab., Frontier Biology, Osaka univ. Osaka university 1 0.80412   0.26768   0.85338   0.52255   245   B   usable mapping rate ion_torrent ion_torrent unknown cdna_unspecified unknown bulk unknown unknown   Japan 2016-03-09 Undetermined Undetermined Fin Surface Structure
100 100 DRR050162 DRX045204 DRS025829 DRP003043 PRJDB4416 Transcriptome analysis in ES1 expressing rods of zebrafish DRP003043 Transcriptome Analysis Transcriptome analysis using next generation sequencing system for isolated rods from zebrafish of wild type T?bingen long fin TL line. Transgenic zebrafish expressing ES1 and/or EGFP in rods were used.     Zebrafish rods expressing EGFP EGFP 1 SAMD00044052   sample name:EGFP rod 001|strain:Tubingen long fin|cell type:rod                 Ion Torrent PGM sequencing of SAMD00044052 DRX045204 1 1 1   RNA-Seq TRANSCRIPTOMIC cDNA SINGLE ION_TORRENT Ion Torrent PGM <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>113</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003043 Ion Torrent PGM sequencing of SAMD00044052       478262965.0 4224064.0 DRR050162 0:113.22 A:136348264;C:104872341;G:113114502;T:123927858;N:0 113       136348264 104872341 113114502 123927858 0 DRX045204 DRS025829 DRA004229 OSAKA_FB|Kawamura lab., Frontier Biology, Osaka univ. Osaka university 1 0.86947   0.29839   0.83317   0.51453   80   B   usable mapping rate ion_torrent ion_torrent unknown cdna_unspecified unknown bulk unknown unknown   Japan 2016-03-09 Undetermined Undetermined Fin Surface Structure
282 282 DRR179616 DRX170142 DRS185505 DRP007318 PRJDB8340 Gene expression analysis of zebrafish fin melanophores and xanthophores. DRP007318 Other Pigment cells melanophores and xanthophores were collected from zebrafish fin. Total RNAs were extracted from each melanophore and xanthophore and cDNA libraries were prepared using SMARTer Ultra Low Input RNA Kit for Sequencing v3 and Ion Xpress Plus gDNA Fragment Library Preparation. The libraries were sequenced using the Ion PGM with Ion PGM OT2 400 kit and Ion PGM Sequencing 400 kit.     Biological replicate 2 Fin xanthophore 03 SAMD00172019   sample name:Zebrafish pigment cell 06|cell type:Xanthophore|collection date:2015 11 12|dev stage:Adult|genotype:Wild type|tissue:Caudal fin and anal fin                 Ion Torrent PGM sequencing of SAMD00172019 DRX170142 Zebrafish fin xanthophore 01 1 1   RNA-Seq TRANSCRIPTOMIC RT-PCR SINGLE ION_TORRENT Ion Torrent PGM <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>232</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP007318 Ion Torrent PGM sequencing of SAMD00172019       376558775.0 1624500.0 DRR179616 0:231.80 A:107837072;C:79508449;G:79372899;T:109840355;N:0 231       107837072 79508449 79372899 109840355 0 DRX170142 DRS185505 DRA008445 OSAKA_FB|Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University 1 0.86944   0.10951   0.90425   0.59385   311   B   usable mapping rate ion_torrent ion_torrent full_length other smarter bulk unknown unknown   Japan 2021-05-21 Adult Adult Fin Surface Structure
283 283 DRR179615 DRX170141 DRS185504 DRP007318 PRJDB8340 Gene expression analysis of zebrafish fin melanophores and xanthophores. DRP007318 Other Pigment cells melanophores and xanthophores were collected from zebrafish fin. Total RNAs were extracted from each melanophore and xanthophore and cDNA libraries were prepared using SMARTer Ultra Low Input RNA Kit for Sequencing v3 and Ion Xpress Plus gDNA Fragment Library Preparation. The libraries were sequenced using the Ion PGM with Ion PGM OT2 400 kit and Ion PGM Sequencing 400 kit.     Biological replicate 1 Fin xanthophore 02 SAMD00172018   sample name:Zebrafish pigment cell 05|cell type:Xanthophore|collection date:2015 09 10|dev stage:Adult|genotype:Wild type|tissue:Caudal fin and anal fin                 Ion Torrent PGM sequencing of SAMD00172018 DRX170141 Zebrafish fin xanthophore 01 1 1   RNA-Seq TRANSCRIPTOMIC RT-PCR SINGLE ION_TORRENT Ion Torrent PGM <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>243</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP007318 Ion Torrent PGM sequencing of SAMD00172018       515115515.0 2124170.0 DRR179615 0:242.50 A:138421982;C:119032803;G:119412227;T:138248503;N:0 242       138421982 119032803 119412227 138248503 0 DRX170141 DRS185504 DRA008445 OSAKA_FB|Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University 1 0.88998   0.05858   0.88051   0.50917   284   B   usable mapping rate ion_torrent ion_torrent full_length other smarter bulk unknown unknown   Japan 2021-05-21 Adult Adult Fin Surface Structure
284 284 DRR179614 DRX170140 DRS185503 DRP007318 PRJDB8340 Gene expression analysis of zebrafish fin melanophores and xanthophores. DRP007318 Other Pigment cells melanophores and xanthophores were collected from zebrafish fin. Total RNAs were extracted from each melanophore and xanthophore and cDNA libraries were prepared using SMARTer Ultra Low Input RNA Kit for Sequencing v3 and Ion Xpress Plus gDNA Fragment Library Preparation. The libraries were sequenced using the Ion PGM with Ion PGM OT2 400 kit and Ion PGM Sequencing 400 kit.     Biological replicate 1 Fin xanthophore 01 SAMD00172017   sample name:Zebrafish pigment cell 04|cell type:Xanthophore|collection date:2015 09 10|dev stage:Adult|genotype:Wild type|tissue:Caudal fin and anal fin                 Ion Torrent PGM sequencing of SAMD00172017 DRX170140 Zebrafish fin xanthophore 01 1 1   RNA-Seq TRANSCRIPTOMIC RT-PCR SINGLE ION_TORRENT Ion Torrent PGM <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>247</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP007318 Ion Torrent PGM sequencing of SAMD00172017       371242152.0 1504407.0 DRR179614 0:246.77 A:99341086;C:86126839;G:86264882;T:99509345;N:0 246       99341086 86126839 86264882 99509345 0 DRX170140 DRS185503 DRA008445 OSAKA_FB|Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University 1 0.88672   0.06422   0.85679   0.5066   56   B   usable mapping rate ion_torrent ion_torrent full_length other smarter bulk unknown unknown   Japan 2021-05-21 Adult Adult Fin Surface Structure
285 285 DRR179613 DRX170139 DRS185502 DRP007318 PRJDB8340 Gene expression analysis of zebrafish fin melanophores and xanthophores. DRP007318 Other Pigment cells melanophores and xanthophores were collected from zebrafish fin. Total RNAs were extracted from each melanophore and xanthophore and cDNA libraries were prepared using SMARTer Ultra Low Input RNA Kit for Sequencing v3 and Ion Xpress Plus gDNA Fragment Library Preparation. The libraries were sequenced using the Ion PGM with Ion PGM OT2 400 kit and Ion PGM Sequencing 400 kit.     Biological replicate 2 Fin melanophore 03 SAMD00172016   sample name:Zebrafish pigment cell 03|cell type:Melanophore|collection date:2015 11 12|dev stage:Adult|genotype:Wild type|tissue:Caudal fin and anal fin                 Ion Torrent PGM sequencing of SAMD00172016 DRX170139 Zebrafish fin melanophore 03 1 1   RNA-Seq TRANSCRIPTOMIC RT-PCR SINGLE ION_TORRENT Ion Torrent PGM <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>248</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP007318 Ion Torrent PGM sequencing of SAMD00172016       342802993.0 1585538.0 DRR179613 0:216.21 A:90833658;C:80789744;G:80463233;T:90716358;N:0 216       90833658 80789744 80463233 90716358 0 DRX170139 DRS185502 DRA008445 OSAKA_FB|Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University 1 0.8312   0.03528   0.88605   0.47299   285   B   usable mapping rate ion_torrent ion_torrent full_length other smarter bulk unknown unknown   Japan 2021-05-21 Adult Adult Fin Surface Structure
286 286 DRR179612 DRX170138 DRS185501 DRP007318 PRJDB8340 Gene expression analysis of zebrafish fin melanophores and xanthophores. DRP007318 Other Pigment cells melanophores and xanthophores were collected from zebrafish fin. Total RNAs were extracted from each melanophore and xanthophore and cDNA libraries were prepared using SMARTer Ultra Low Input RNA Kit for Sequencing v3 and Ion Xpress Plus gDNA Fragment Library Preparation. The libraries were sequenced using the Ion PGM with Ion PGM OT2 400 kit and Ion PGM Sequencing 400 kit.     Biological replicate 1 Fin melanophore 02 SAMD00172015   sample name:Zebrafish pigment cell 02|cell type:Melanophore|collection date:2015 05 12|dev stage:Adult|genotype:Wild type|tissue:Caudal fin and anal fin                 Ion Torrent PGM sequencing of SAMD00172015 DRX170138 Zebrafish fin melanophore 02 1 1   RNA-Seq TRANSCRIPTOMIC RT-PCR SINGLE ION_TORRENT Ion Torrent PGM <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>216</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP007318 Ion Torrent PGM sequencing of SAMD00172015       538412675.0 2168231.0 DRR179612 0:248.32 A:147128403;C:121854818;G:121564109;T:147865345;N:0 248       147128403 121854818 121564109 147865345 0 DRX170138 DRS185501 DRA008445 OSAKA_FB|Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University 1 0.89106   0.07081   0.89286   0.5935   283   B   usable mapping rate ion_torrent ion_torrent full_length other smarter bulk unknown unknown   Japan 2021-05-21 Adult Adult Fin Surface Structure
287 287 DRR179611 DRX170137 DRS185500 DRP007318 PRJDB8340 Gene expression analysis of zebrafish fin melanophores and xanthophores. DRP007318 Other Pigment cells melanophores and xanthophores were collected from zebrafish fin. Total RNAs were extracted from each melanophore and xanthophore and cDNA libraries were prepared using SMARTer Ultra Low Input RNA Kit for Sequencing v3 and Ion Xpress Plus gDNA Fragment Library Preparation. The libraries were sequenced using the Ion PGM with Ion PGM OT2 400 kit and Ion PGM Sequencing 400 kit.     Biological replicate 1 Fin melanophore 01 SAMD00172014   sample name:Zebrafish pigment cell 01|cell type:Melanophore|collection date:2015 05 12|dev stage:Adult|genotype:Wild type|tissue:Caudal fin and anal fin                 Ion Torrent PGM sequencing of SAMD00172014 DRX170137 Zebrafish fin melanophore 01 1 1   RNA-Seq TRANSCRIPTOMIC RT-PCR SINGLE ION_TORRENT Ion Torrent PGM <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>215</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP007318 Ion Torrent PGM sequencing of SAMD00172014       282446840.0 1311431.0 DRR179611 0:215.37 A:74927237;C:66575483;G:66161471;T:74782649;N:0 215       74927237 66575483 66161471 74782649 0 DRX170137 DRS185500 DRA008445 OSAKA_FB|Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University 1 0.85938   0.0335   0.89248   0.58813   274   B   usable mapping rate ion_torrent ion_torrent full_length other smarter bulk unknown unknown   Japan 2021-05-21 Adult Adult Fin Surface Structure
288 288 DRR224554 DRX214839 DRS236362 DRP008458 PRJDB9741 RNA seq for developing pectoral fin in zebrafish DRP008458 Other From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.       pectoral fin from RIKEN Wild type zebrafish Adult C SAMD00222585   sample name:Adult C                 Illumina NovaSeq 6000 paired end sequencing of SAMD00222585 DRX214839 Adult C 1 Illumina TruSeq Stranded mRNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008458 Illumina NovaSeq 6000 paired end sequencing of SAMD00222585       11727505800.0 58637529.0 DRR224554 0:100 1:100 A:3137648588;C:2705013210;G:3191753451;T:2692963496;N:127055 100 100     3137648588 2705013210 3191753451 2692963496 127055 DRX214839 DRS236362 DRA010086 TOHOKUGL|Laboratory of organ morphogenesis Graduate School of Life Sciences, Tohoku University 2 0.95934 0.93156 0.03853 0.0394 0.72683 0.74625 0.45812 0.47098 100 100 B B biological fallback assumption illumina novaseq_era unknown poly_a trueseq bulk unknown unknown   Japan 2022-04-21 Adult Adult Fin Surface Structure
289 289 DRR224553 DRX214838 DRS236361 DRP008458 PRJDB9741 RNA seq for developing pectoral fin in zebrafish DRP008458 Other From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.       pectoral fin from RIKEN Wild type zebrafish Adult B SAMD00222584   sample name:Adult B                 Illumina NovaSeq 6000 paired end sequencing of SAMD00222584 DRX214838 Adult B 1 Illumina TruSeq Stranded mRNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008458 Illumina NovaSeq 6000 paired end sequencing of SAMD00222584       22010855600.0 110054278.0 DRR224553 0:100 1:100 A:5511440112;C:5498539659;G:5546758172;T:5453879750;N:237907 100 100     5511440112 5498539659 5546758172 5453879750 237907 DRX214838 DRS236361 DRA010086 TOHOKUGL|Laboratory of organ morphogenesis Graduate School of Life Sciences, Tohoku University 2 0.95774 0.95394 0.04568 0.04411 0.70701 0.70881 0.47041 0.47938 100 100 B B biological fallback assumption illumina novaseq_era unknown poly_a trueseq bulk unknown unknown   Japan 2022-04-21 Adult Adult Fin Surface Structure
290 290 DRR224552 DRX214837 DRS236360 DRP008458 PRJDB9741 RNA seq for developing pectoral fin in zebrafish DRP008458 Other From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.       pectoral fin from RIKEN Wild type zebrafish Adult A SAMD00222583   sample name:Adult A                 Illumina NovaSeq 6000 paired end sequencing of SAMD00222583 DRX214837 Adult A 1 Illumina TruSeq Stranded mRNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008458 Illumina NovaSeq 6000 paired end sequencing of SAMD00222583       17683281000.0 88416405.0 DRR224552 0:100 1:100 A:4386756926;C:4479415938;G:4578796094;T:4238125580;N:186462 100 100     4386756926 4479415938 4578796094 4238125580 186462 DRX214837 DRS236360 DRA010086 TOHOKUGL|Laboratory of organ morphogenesis Graduate School of Life Sciences, Tohoku University 2 0.95974 0.95566 0.05237 0.05086 0.74357 0.74742 0.48578 0.49971 100 100 B B biological fallback assumption illumina novaseq_era unknown poly_a trueseq bulk unknown unknown   Japan 2022-04-21 Adult Adult Fin Surface Structure
291 291 DRR224551 DRX214836 DRS236359 DRP008458 PRJDB9741 RNA seq for developing pectoral fin in zebrafish DRP008458 Other From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.       pectoral fin from RIKEN Wild type zebrafish at 42dpf C SAMD00222582   sample name:42dpf C                 Illumina NovaSeq 6000 paired end sequencing of SAMD00222582 DRX214836 42dpf C 1 Illumina TruSeq Stranded mRNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008458 Illumina NovaSeq 6000 paired end sequencing of SAMD00222582       14328721000.0 71643605.0 DRR224551 0:100 1:100 A:3545040254;C:3629416092;G:3695002549;T:3459108561;N:153544 100 100     3545040254 3629416092 3695002549 3459108561 153544 DRX214836 DRS236359 DRA010086 TOHOKUGL|Laboratory of organ morphogenesis Graduate School of Life Sciences, Tohoku University 2 0.9671 0.95979 0.04174 0.04058 0.71867 0.72143 0.44818 0.46122 100 100 B B biological fallback assumption illumina novaseq_era unknown poly_a trueseq bulk unknown unknown   Japan 2022-04-21 Juvenile Juvenile Fin Surface Structure
292 292 DRR224550 DRX214835 DRS236358 DRP008458 PRJDB9741 RNA seq for developing pectoral fin in zebrafish DRP008458 Other From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.       pectoral fin from RIKEN Wild type zebrafish at 42dpf B SAMD00222581   sample name:42dpf B                 Illumina NovaSeq 6000 paired end sequencing of SAMD00222581 DRX214835 42dpf B 1 Illumina TruSeq Stranded mRNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008458 Illumina NovaSeq 6000 paired end sequencing of SAMD00222581       14782437000.0 73912185.0 DRR224550 0:100 1:100 A:3652595601;C:3746189790;G:3788229051;T:3595263949;N:158609 100 100     3652595601 3746189790 3788229051 3595263949 158609 DRX214835 DRS236358 DRA010086 TOHOKUGL|Laboratory of organ morphogenesis Graduate School of Life Sciences, Tohoku University 2 0.96502 0.95776 0.0417 0.0399 0.71311 0.71423 0.46064 0.44469 100 100 B B biological fallback assumption illumina novaseq_era unknown poly_a trueseq bulk unknown unknown   Japan 2022-04-21 Juvenile Juvenile Fin Surface Structure
293 293 DRR224549 DRX214834 DRS236357 DRP008458 PRJDB9741 RNA seq for developing pectoral fin in zebrafish DRP008458 Other From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.       pectoral fin from RIKEN Wild type zebrafish at 42dpf A SAMD00222580   sample name:42dpf A                 Illumina NovaSeq 6000 paired end sequencing of SAMD00222580 DRX214834 42dpf A 1 Illumina TruSeq Stranded mRNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008458 Illumina NovaSeq 6000 paired end sequencing of SAMD00222580       17895751600.0 89478758.0 DRR224549 0:100 1:100 A:4428562207;C:4525140210;G:4573827895;T:4368029340;N:191948 100 100     4428562207 4525140210 4573827895 4368029340 191948 DRX214834 DRS236357 DRA010086 TOHOKUGL|Laboratory of organ morphogenesis Graduate School of Life Sciences, Tohoku University 2 0.96506 0.96043 0.04654 0.0446 0.70956 0.71153 0.49143 0.48957 100 100 B B biological fallback assumption illumina novaseq_era unknown poly_a trueseq bulk unknown unknown   Japan 2022-04-21 Juvenile Juvenile Fin Surface Structure
294 294 DRR224548 DRX214833 DRS236356 DRP008458 PRJDB9741 RNA seq for developing pectoral fin in zebrafish DRP008458 Other From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.       pectoral fin from RIKEN Wild type zebrafish at 28dpf C SAMD00222579   sample name:28dpf C                 Illumina NovaSeq 6000 paired end sequencing of SAMD00222579 DRX214833 28dpf C 1 Illumina TruSeq Stranded mRNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008458 Illumina NovaSeq 6000 paired end sequencing of SAMD00222579       16269568600.0 81347843.0 DRR224548 0:100 1:100 A:3978004953;C:4160626131;G:4174223034;T:3956539398;N:175084 100 100     3978004953 4160626131 4174223034 3956539398 175084 DRX214833 DRS236356 DRA010086 TOHOKUGL|Laboratory of organ morphogenesis Graduate School of Life Sciences, Tohoku University 2 0.9633 0.95842 0.0474 0.04564 0.72184 0.72253 0.47871 0.46471 100 100 B B biological fallback assumption illumina novaseq_era unknown poly_a trueseq bulk unknown unknown   Japan 2022-04-21 Larval Larval Fin Surface Structure
295 295 DRR224547 DRX214832 DRS236355 DRP008458 PRJDB9741 RNA seq for developing pectoral fin in zebrafish DRP008458 Other From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.       pectoral fin from RIKEN Wild type zebrafish at 28dpf B SAMD00222578   sample name:28dpf B                 Illumina NovaSeq 6000 paired end sequencing of SAMD00222578 DRX214832 28dpf B 1 Illumina TruSeq Stranded mRNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008458 Illumina NovaSeq 6000 paired end sequencing of SAMD00222578       19970979800.0 99854899.0 DRR224547 0:100 1:100 A:5064043525;C:4909415172;G:5303813974;T:4693498507;N:208622 100 100     5064043525 4909415172 5303813974 4693498507 208622 DRX214832 DRS236355 DRA010086 TOHOKUGL|Laboratory of organ morphogenesis Graduate School of Life Sciences, Tohoku University 2 0.95486 0.94587 0.05718 0.05404 0.73746 0.74754 0.51956 0.47088 100 100 B B biological fallback assumption illumina novaseq_era unknown poly_a trueseq bulk unknown unknown   Japan 2022-04-21 Larval Larval Fin Surface Structure
296 296 DRR224546 DRX214831 DRS236354 DRP008458 PRJDB9741 RNA seq for developing pectoral fin in zebrafish DRP008458 Other From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.       pectoral fin from RIKEN Wild type zebrafish at 28dpf A SAMD00222577   sample name:28dpf A                 Illumina NovaSeq 6000 paired end sequencing of SAMD00222577 DRX214831 28dpf A 1 Illumina TruSeq Stranded mRNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008458 Illumina NovaSeq 6000 paired end sequencing of SAMD00222577       17870876400.0 89354382.0 DRR224546 0:100 1:100 A:4431724830;C:4512913394;G:4543413766;T:4382632384;N:192026 100 100     4431724830 4512913394 4543413766 4382632384 192026 DRX214831 DRS236354 DRA010086 TOHOKUGL|Laboratory of organ morphogenesis Graduate School of Life Sciences, Tohoku University 2 0.9608 0.95643 0.045 0.04296 0.7236 0.7234 0.50029 0.50287 100 100 B B biological fallback assumption illumina novaseq_era unknown poly_a trueseq bulk unknown unknown   Japan 2022-04-21 Larval Larval Fin Surface Structure
297 297 DRR224545 DRX214830 DRS236353 DRP008458 PRJDB9741 RNA seq for developing pectoral fin in zebrafish DRP008458 Other From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.       pectoral fin from RIKEN Wild type zebrafish at 14dpf C SAMD00222576   sample name:14dpf C                 Illumina NovaSeq 6000 paired end sequencing of SAMD00222576 DRX214830 14dpf C 1 Illumina TruSeq Stranded mRNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008458 Illumina NovaSeq 6000 paired end sequencing of SAMD00222576       16979810200.0 84899051.0 DRR224545 0:100 1:100 A:4241907225;C:4256915446;G:4277991608;T:4202813567;N:182354 100 100     4241907225 4256915446 4277991608 4202813567 182354 DRX214830 DRS236353 DRA010086 TOHOKUGL|Laboratory of organ morphogenesis Graduate School of Life Sciences, Tohoku University 2 0.96662 0.96168 0.03768 0.03562 0.72368 0.72464 0.48494 0.48687 100 100 B B biological fallback assumption illumina novaseq_era unknown poly_a trueseq bulk unknown unknown   Japan 2022-04-21 Larval Larval Fin Surface Structure
298 298 DRR224544 DRX214829 DRS236352 DRP008458 PRJDB9741 RNA seq for developing pectoral fin in zebrafish DRP008458 Other From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.       pectoral fin from RIKEN Wild type zebrafish at 14dpf B SAMD00222575   sample name:14dpf B                 Illumina NovaSeq 6000 paired end sequencing of SAMD00222575 DRX214829 14dpf B 1 Illumina TruSeq Stranded mRNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008458 Illumina NovaSeq 6000 paired end sequencing of SAMD00222575       18273780000.0 91368900.0 DRR224544 0:100 1:100 A:4545336763;C:4589502978;G:4635310325;T:4503435996;N:193938 100 100     4545336763 4589502978 4635310325 4503435996 193938 DRX214829 DRS236352 DRA010086 TOHOKUGL|Laboratory of organ morphogenesis Graduate School of Life Sciences, Tohoku University 2 0.97073 0.96595 0.03063 0.02973 0.73632 0.73758 0.47494 0.46918 100 100 B B biological fallback assumption illumina novaseq_era unknown poly_a trueseq bulk unknown unknown   Japan 2022-04-21 Larval Larval Fin Surface Structure
299 299 DRR224543 DRX214828 DRS236351 DRP008458 PRJDB9741 RNA seq for developing pectoral fin in zebrafish DRP008458 Other From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.       pectoral fin from RIKEN Wild type zebrafish at 14dpf A SAMD00222574   sample name:14dpf A                 Illumina NovaSeq 6000 paired end sequencing of SAMD00222574 DRX214828 14dpf A 1 Illumina TruSeq Stranded mRNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008458 Illumina NovaSeq 6000 paired end sequencing of SAMD00222574       18294607600.0 91473038.0 DRR224543 0:100 1:100 A:4623135433;C:4539347940;G:4561846652;T:4570079366;N:198209 100 100     4623135433 4539347940 4561846652 4570079366 198209 DRX214828 DRS236351 DRA010086 TOHOKUGL|Laboratory of organ morphogenesis Graduate School of Life Sciences, Tohoku University 2 0.96261 0.9592 0.02999 0.02873 0.72699 0.72796 0.4679 0.46591 100 100 B B biological fallback assumption illumina novaseq_era unknown poly_a trueseq bulk unknown unknown   Japan 2022-04-21 Larval Larval Fin Surface Structure
300 300 DRR224542 DRX214827 DRS236350 DRP008458 PRJDB9741 RNA seq for developing pectoral fin in zebrafish DRP008458 Other From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.       pectoral fin from RIKEN Wild type zebrafish at 5dpf C SAMD00222573   sample name:5dpf C                 Illumina NovaSeq 6000 paired end sequencing of SAMD00222573 DRX214827 5dpf C 1 Illumina TruSeq Stranded mRNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008458 Illumina NovaSeq 6000 paired end sequencing of SAMD00222573       18736996000.0 93684980.0 DRR224542 0:100 1:100 A:4647244376;C:4733187951;G:4746515898;T:4609906214;N:141561 100 100     4647244376 4733187951 4746515898 4609906214 141561 DRX214827 DRS236350 DRA010086 TOHOKUGL|Laboratory of organ morphogenesis Graduate School of Life Sciences, Tohoku University 2 0.97229 0.96893 0.042 0.03995 0.74172 0.74328 0.44607 0.44755 100 100 B B biological fallback assumption illumina novaseq_era unknown poly_a trueseq bulk unknown unknown   Japan 2022-04-21 Larval Larval Fin Surface Structure
301 301 DRR224541 DRX214826 DRS236349 DRP008458 PRJDB9741 RNA seq for developing pectoral fin in zebrafish DRP008458 Other From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.       pectoral fin from RIKEN Wild type zebrafish at 5dpf B SAMD00222572   sample name:5dpf B                 Illumina NovaSeq 6000 paired end sequencing of SAMD00222572 DRX214826 5dpf B 1 Illumina TruSeq Stranded mRNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008458 Illumina NovaSeq 6000 paired end sequencing of SAMD00222572       22151021400.0 110755107.0 DRR224541 0:100 1:100 A:5555093734;C:5532777660;G:5592525988;T:5470461779;N:162239 100 100     5555093734 5532777660 5592525988 5470461779 162239 DRX214826 DRS236349 DRA010086 TOHOKUGL|Laboratory of organ morphogenesis Graduate School of Life Sciences, Tohoku University 2 0.96835 0.96645 0.04001 0.03872 0.72865 0.72934 0.46355 0.46428 100 100 B B biological fallback assumption illumina novaseq_era unknown poly_a trueseq bulk unknown unknown   Japan 2022-04-21 Larval Larval Fin Surface Structure
302 302 DRR224540 DRX214825 DRS236348 DRP008458 PRJDB9741 RNA seq for developing pectoral fin in zebrafish DRP008458 Other From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.       pectoral fin from RIKEN Wild type zebrafish at 5dpf A SAMD00222571   sample name:5dpf A                 Illumina NovaSeq 6000 paired end sequencing of SAMD00222571 DRX214825 5dpf A 1 Illumina TruSeq Stranded mRNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008458 Illumina NovaSeq 6000 paired end sequencing of SAMD00222571       18219864200.0 91099321.0 DRR224540 0:100 1:100 A:4485880313;C:4629712312;G:4617351502;T:4486786107;N:133966 100 100     4485880313 4629712312 4617351502 4486786107 133966 DRX214825 DRS236348 DRA010086 TOHOKUGL|Laboratory of organ morphogenesis Graduate School of Life Sciences, Tohoku University 2 0.97075 0.96902 0.04498 0.0432 0.72971 0.73044 0.45267 0.4604 100 100 B B biological fallback assumption illumina novaseq_era unknown poly_a trueseq bulk unknown unknown   Japan 2022-04-21 Larval Larval Fin Surface Structure
303 303 DRR224539 DRX214824 DRS236347 DRP008458 PRJDB9741 RNA seq for developing pectoral fin in zebrafish DRP008458 Other From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.       pectoral fin bud from gM1116A zebrafish at 48hpf C SAMD00222570   sample name:48hpf C                 Illumina NovaSeq 6000 paired end sequencing of SAMD00222570 DRX214824 48hpf C 1 Illumina TruSeq Stranded mRNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008458 Illumina NovaSeq 6000 paired end sequencing of SAMD00222570       16828182200.0 84140911.0 DRR224539 0:100 1:100 A:3957959900;C:4467368792;G:4483580218;T:3919146988;N:126302 100 100     3957959900 4467368792 4483580218 3919146988 126302 DRX214824 DRS236347 DRA010086 TOHOKUGL|Laboratory of organ morphogenesis Graduate School of Life Sciences, Tohoku University 2 0.97277 0.97115 0.05409 0.05185 0.76717 0.76836 0.46592 0.45571 100 100 B B biological fallback assumption illumina novaseq_era unknown poly_a trueseq bulk unknown unknown   Japan 2022-04-21 Hatching Embryo Fin Surface Structure
304 304 DRR224538 DRX214823 DRS236346 DRP008458 PRJDB9741 RNA seq for developing pectoral fin in zebrafish DRP008458 Other From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.       pectoral fin bud from gM1116A zebrafish at 48hpf B SAMD00222569   sample name:48hpf B                 Illumina NovaSeq 6000 paired end sequencing of SAMD00222569 DRX214823 48hpf B 1 Illumina TruSeq Stranded mRNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008458 Illumina NovaSeq 6000 paired end sequencing of SAMD00222569       22815822200.0 114079111.0 DRR224538 0:100 1:100 A:5651922913;C:5760379580;G:5844694518;T:5558658503;N:166686 100 100     5651922913 5760379580 5844694518 5558658503 166686 DRX214823 DRS236346 DRA010086 TOHOKUGL|Laboratory of organ morphogenesis Graduate School of Life Sciences, Tohoku University 2 0.96814 0.96379 0.03526 0.03362 0.71575 0.71697 0.47605 0.47359 100 100 B B biological fallback assumption illumina novaseq_era unknown poly_a trueseq bulk unknown unknown   Japan 2022-04-21 Hatching Embryo Fin Surface Structure
305 305 DRR224537 DRX214822 DRS236345 DRP008458 PRJDB9741 RNA seq for developing pectoral fin in zebrafish DRP008458 Other From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.       pectoral fin bud from gM1116A zebrafish at 48hpf A SAMD00222568   sample name:48hpf A                 Illumina NovaSeq 6000 paired end sequencing of SAMD00222568 DRX214822 48hpf A 1 Illumina TruSeq Stranded mRNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008458 Illumina NovaSeq 6000 paired end sequencing of SAMD00222568       13993230400.0 69966152.0 DRR224537 0:100 1:100 A:3484590137;C:3511805255;G:3624285719;T:3372446706;N:102583 100 100     3484590137 3511805255 3624285719 3372446706 102583 DRX214822 DRS236345 DRA010086 TOHOKUGL|Laboratory of organ morphogenesis Graduate School of Life Sciences, Tohoku University 2 0.96467 0.96428 0.04367 0.04212 0.72853 0.73125 0.49715 0.49652 100 100 B B biological fallback assumption illumina novaseq_era unknown poly_a trueseq bulk unknown unknown   Japan 2022-04-21 Hatching Embryo Fin Surface Structure
306 306 DRR224536 DRX214821 DRS236344 DRP008458 PRJDB9741 RNA seq for developing pectoral fin in zebrafish DRP008458 Other From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.       pectoral fin bud from gM1116A zebrafish at 40hpf C SAMD00222567   sample name:40hpf C                 Illumina NovaSeq 6000 paired end sequencing of SAMD00222567 DRX214821 40hpf C 1 Illumina TruSeq Stranded mRNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008458 Illumina NovaSeq 6000 paired end sequencing of SAMD00222567       14926054400.0 74630272.0 DRR224536 0:100 1:100 A:3647365116;C:3826172690;G:3866071867;T:3586333511;N:111216 100 100     3647365116 3826172690 3866071867 3586333511 111216 DRX214821 DRS236344 DRA010086 TOHOKUGL|Laboratory of organ morphogenesis Graduate School of Life Sciences, Tohoku University 2 0.96395 0.96168 0.05081 0.04957 0.75489 0.75607 0.51046 0.52135 100 100 B B biological fallback assumption illumina novaseq_era unknown poly_a trueseq bulk unknown unknown   Japan 2022-04-21 Pharyngula Embryo Fin Surface Structure
307 307 DRR224535 DRX214820 DRS236343 DRP008458 PRJDB9741 RNA seq for developing pectoral fin in zebrafish DRP008458 Other From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.       pectoral fin bud from gM1116A zebrafish at 40hpf B SAMD00222566   sample name:40hpf B                 Illumina NovaSeq 6000 paired end sequencing of SAMD00222566 DRX214820 40hpf B 1 Illumina TruSeq Stranded mRNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008458 Illumina NovaSeq 6000 paired end sequencing of SAMD00222566       14413995800.0 72069979.0 DRR224535 0:100 1:100 A:3598207137;C:3642219692;G:3750145663;T:3423315835;N:107473 100 100     3598207137 3642219692 3750145663 3423315835 107473 DRX214820 DRS236343 DRA010086 TOHOKUGL|Laboratory of organ morphogenesis Graduate School of Life Sciences, Tohoku University 2 0.97396 0.97107 0.04686 0.04549 0.7444 0.74968 0.50051 0.49798 100 100 B B biological fallback assumption illumina novaseq_era unknown poly_a trueseq bulk unknown unknown   Japan 2022-04-21 Pharyngula Embryo Fin Surface Structure
308 308 DRR224534 DRX214819 DRS236342 DRP008458 PRJDB9741 RNA seq for developing pectoral fin in zebrafish DRP008458 Other From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.       pectoral fin bud from gM1116A zebrafish at 40hpf A SAMD00222565   sample name:40hpf A                 Illumina NovaSeq 6000 paired end sequencing of SAMD00222565 DRX214819 40hpf A 1 Illumina TruSeq Stranded mRNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008458 Illumina NovaSeq 6000 paired end sequencing of SAMD00222565       14351831800.0 71759159.0 DRR224534 0:100 1:100 A:3552114377;C:3639389412;G:3719404253;T:3440817088;N:106670 100 100     3552114377 3639389412 3719404253 3440817088 106670 DRX214819 DRS236342 DRA010086 TOHOKUGL|Laboratory of organ morphogenesis Graduate School of Life Sciences, Tohoku University 2 0.96606 0.96569 0.04249 0.04107 0.7514 0.75367 0.49762 0.49753 100 100 B B biological fallback assumption illumina novaseq_era unknown poly_a trueseq bulk unknown unknown   Japan 2022-04-21 Pharyngula Embryo Fin Surface Structure
309 309 DRR224533 DRX214818 DRS236341 DRP008458 PRJDB9741 RNA seq for developing pectoral fin in zebrafish DRP008458 Other From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.       pectoral fin bud from gM1116A zebrafish at 32hpf C SAMD00222564   sample name:32hpf C                 Illumina NovaSeq 6000 paired end sequencing of SAMD00222564 DRX214818 32hpf C 1 Illumina TruSeq Stranded mRNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008458 Illumina NovaSeq 6000 paired end sequencing of SAMD00222564       18499667800.0 92498339.0 DRR224533 0:100 1:100 A:4655671152;C:4605325822;G:4688156846;T:4550378341;N:135639 100 100     4655671152 4605325822 4688156846 4550378341 135639 DRX214818 DRS236341 DRA010086 TOHOKUGL|Laboratory of organ morphogenesis Graduate School of Life Sciences, Tohoku University 2 0.9673 0.96864 0.04184 0.04008 0.73087 0.73318 0.48331 0.48043 100 100 B B biological fallback assumption illumina novaseq_era unknown poly_a trueseq bulk unknown unknown   Japan 2022-04-21 Pharyngula Embryo Fin Surface Structure
310 310 DRR224532 DRX214817 DRS236340 DRP008458 PRJDB9741 RNA seq for developing pectoral fin in zebrafish DRP008458 Other From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.       pectoral fin bud from gM1116A zebrafish at 32hpf B SAMD00222563   sample name:32hpf B                 Illumina NovaSeq 6000 paired end sequencing of SAMD00222563 DRX214817 32hpf B 1 Illumina TruSeq Stranded mRNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008458 Illumina NovaSeq 6000 paired end sequencing of SAMD00222563       19952418000.0 99762090.0 DRR224532 0:100 1:100 A:4972665902;C:5012518349;G:5094132814;T:4872951533;N:149402 100 100     4972665902 5012518349 5094132814 4872951533 149402 DRX214817 DRS236340 DRA010086 TOHOKUGL|Laboratory of organ morphogenesis Graduate School of Life Sciences, Tohoku University 2 0.97325 0.97252 0.03729 0.03575 0.71591 0.7163 0.47191 0.47859 100 100 B B biological fallback assumption illumina novaseq_era unknown poly_a trueseq bulk unknown unknown   Japan 2022-04-21 Pharyngula Embryo Fin Surface Structure
311 311 DRR224531 DRX214816 DRS236339 DRP008458 PRJDB9741 RNA seq for developing pectoral fin in zebrafish DRP008458 Other From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.       pectoral fin bud from gM1116A zebrafish at 32hpf A SAMD00222562   sample name:32hpf A                 Illumina NovaSeq 6000 paired end sequencing of SAMD00222562 DRX214816 32hpf A 1 Illumina TruSeq Stranded mRNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008458 Illumina NovaSeq 6000 paired end sequencing of SAMD00222562       16357024800.0 81785124.0 DRR224531 0:100 1:100 A:4049805675;C:4130985751;G:4172952730;T:4003159212;N:121432 100 100     4049805675 4130985751 4172952730 4003159212 121432 DRX214816 DRS236339 DRA010086 TOHOKUGL|Laboratory of organ morphogenesis Graduate School of Life Sciences, Tohoku University 2 0.97046 0.96886 0.03577 0.03489 0.73257 0.73231 0.4825 0.48849 100 100 B B biological fallback assumption illumina novaseq_era unknown poly_a trueseq bulk unknown unknown   Japan 2022-04-21 Pharyngula Embryo Fin Surface Structure
1343 1343 ERR1821990 ERX1884482 ERS1343316 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 mock 6hpi 7 SAMEA4431867 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431867|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:43:16Z|INSDC status:public|Submitter Id:8a3d4d10 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8a3d4d10 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 7#96 DN465656V:H12 Illumina sequencing of library DN465656V:H12 constructed from sample accession ERS1343316 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence GTCTTGGC. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_7#96.cram cram 345517950.0 2303453.0 SC RUN 21115 7#96 0:75 1:75 A:91753293;C:80579294;G:80049976;T:93111505;N:23882 75 75     91753293 80579294 80049976 93111505 23882 ERX1884482 ERS1343316 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.9565 0.95935 0.12705 0.1217 0.68665 0.68745 0.48707 0.48858 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1344 1344 ERR1821989 ERX1884481 ERS1343315 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 inf 6hpi 11 SAMEA4431866 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431866|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:43:15Z|INSDC status:public|Submitter Id:8a34c190 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8a34c190 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 7#95 DN465656V:G12 Illumina sequencing of library DN465656V:G12 constructed from sample accession ERS1343315 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence GATTCATC. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_7#95.cram cram 364024650.0 2426831.0 SC RUN 21115 7#95 0:75 1:75 A:95916965;C:85606514;G:85201716;T:97272921;N:26534 75 75     95916965 85606514 85201716 97272921 26534 ERX1884481 ERS1343315 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.95308 0.9573 0.12802 0.12464 0.68114 0.6817 0.4667 0.47686 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1345 1345 ERR1821988 ERX1884480 ERS1343314 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 mock 6hpi 10 SAMEA4431865 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431865|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:43:15Z|INSDC status:public|Submitter Id:8a2c5d20 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8a2c5d20 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 7#94 DN465656V:F12 Illumina sequencing of library DN465656V:F12 constructed from sample accession ERS1343314 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence GCTAACTC. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_7#94.cram cram 309343200.0 2062288.0 SC RUN 21115 7#94 0:75 1:75 A:81870720;C:72361549;G:72008899;T:83081311;N:20721 75 75     81870720 72361549 72008899 83081311 20721 ERX1884480 ERS1343314 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.95466 0.95821 0.12781 0.12327 0.68316 0.6827 0.47554 0.473 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1346 1346 ERR1821987 ERX1884479 ERS1343313 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 mock 6hpi 8 SAMEA4431864 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431864|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:43:14Z|INSDC status:public|Submitter Id:8a23d1a0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8a23d1a0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 7#93 DN465656V:E12 Illumina sequencing of library DN465656V:E12 constructed from sample accession ERS1343313 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence GCACTGTC. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_7#93.cram cram 351364950.0 2342433.0 SC RUN 21115 7#93 0:75 1:75 A:90109745;C:84916907;G:84829295;T:91484844;N:24159 75 75     90109745 84916907 84829295 91484844 24159 ERX1884479 ERS1343313 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.96367 0.96715 0.12608 0.12301 0.69122 0.69199 0.4811 0.47937 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1349 1349 ERR1821984 ERX1884476 ERS1343310 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 inf 6hpi 23 SAMEA4431861 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431861|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:43:11Z|INSDC status:public|Submitter Id:8a0a0810 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8a0a0810 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 7#90 DN465656V:B12 Illumina sequencing of library DN465656V:B12 constructed from sample accession ERS1343310 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence GCAATCCG. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_7#90.cram cram 327632850.0 2184219.0 SC RUN 21115 7#90 0:75 1:75 A:85924891;C:77302972;G:77056818;T:87325377;N:22792 75 75     85924891 77302972 77056818 87325377 22792 ERX1884476 ERS1343310 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.95516 0.95885 0.12908 0.12567 0.68024 0.68073 0.4789 0.46603 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1351 1351 ERR1821982 ERX1884474 ERS1343308 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 inf 6hpi 24 SAMEA4431859 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431859|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:43:10Z|INSDC status:public|Submitter Id:89f8ca00 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:89f8ca00 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 7#88 DN465656V:H11 Illumina sequencing of library DN465656V:H11 constructed from sample accession ERS1343308 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence GATAGAGG. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_7#88.cram cram 341873100.0 2279154.0 SC RUN 21115 7#88 0:75 1:75 A:90890336;C:79583107;G:79122986;T:92253133;N:23538 75 75     90890336 79583107 79122986 92253133 23538 ERX1884474 ERS1343308 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.95206 0.95482 0.13868 0.13387 0.67574 0.67608 0.4731 0.47619 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1353 1353 ERR1821980 ERX1884472 ERS1343306 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 mock 6hpi 2 SAMEA4431857 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431857|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:43:08Z|INSDC status:public|Submitter Id:89e7b300 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:89e7b300 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 7#86 DN465656V:F11 Illumina sequencing of library DN465656V:F11 constructed from sample accession ERS1343306 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence GTTGTCGG. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_7#86.cram cram 298295250.0 1988635.0 SC RUN 21115 7#86 0:75 1:75 A:78320474;C:70341391;G:69945735;T:79667042;N:20608 75 75     78320474 70341391 69945735 79667042 20608 ERX1884472 ERS1343306 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.95656 0.96027 0.12066 0.11593 0.68454 0.68669 0.47075 0.47796 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1354 1354 ERR1821979 ERX1884471 ERS1343305 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 inf 6hpi 16 SAMEA4431856 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431856|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:43:07Z|INSDC status:public|Submitter Id:89de3d20 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:89de3d20 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 7#85 DN465656V:E11 Illumina sequencing of library DN465656V:E11 constructed from sample accession ERS1343305 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence GAGGATGG. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_7#85.cram cram 359866950.0 2399113.0 SC RUN 21115 7#85 0:75 1:75 A:93719620;C:85604760;G:85368955;T:95149504;N:24111 75 75     93719620 85604760 85368955 95149504 24111 ERX1884471 ERS1343305 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.9588 0.96228 0.12915 0.12531 0.69877 0.69994 0.48415 0.48329 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1355 1355 ERR1821978 ERX1884470 ERS1343304 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 inf 6hpi 2 SAMEA4431855 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431855|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:43:06Z|INSDC status:public|Submitter Id:89d58a90 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:89d58a90 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 7#84 DN465656V:D11 Illumina sequencing of library DN465656V:D11 constructed from sample accession ERS1343304 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence GTAAGGTG. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_7#84.cram cram 343587900.0 2290586.0 SC RUN 21115 7#84 0:75 1:75 A:88614226;C:82509443;G:82384006;T:90057117;N:23108 75 75     88614226 82509443 82384006 90057117 23108 ERX1884470 ERS1343304 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.95996 0.9639 0.12325 0.11918 0.6872 0.68838 0.47479 0.4727 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1357 1357 ERR1821976 ERX1884468 ERS1343302 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 mock 6hpi 12 SAMEA4431853 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431853|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:43:05Z|INSDC status:public|Submitter Id:89c3fe60 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:89c3fe60 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 7#82 DN465656V:B11 Illumina sequencing of library DN465656V:B11 constructed from sample accession ERS1343302 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence GAGCCAAT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_7#82.cram cram 340696650.0 2271311.0 SC RUN 21115 7#82 0:75 1:75 A:90082676;C:79663831;G:79306009;T:91620522;N:23612 75 75     90082676 79663831 79306009 91620522 23612 ERX1884468 ERS1343302 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.95466 0.95796 0.1244 0.11949 0.68185 0.68128 0.47379 0.47395 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1363 1363 ERR1821970 ERX1884462 ERS1343296 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 inf 6hpi 12 SAMEA4431847 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431847|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:59Z|INSDC status:public|Submitter Id:89901d20 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:89901d20 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 7#76 DN465656V:D10 Illumina sequencing of library DN465656V:D10 constructed from sample accession ERS1343296 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence GTACATCT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_7#76.cram cram 318221850.0 2121479.0 SC RUN 21115 7#76 0:75 1:75 A:83320795;C:75194711;G:74954216;T:84731231;N:20897 75 75     83320795 75194711 74954216 84731231 20897 ERX1884462 ERS1343296 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.95709 0.9592 0.13197 0.12745 0.67608 0.6771 0.47647 0.47533 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1365 1365 ERR1821968 ERX1884460 ERS1343294 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 inf 6hpi 20 SAMEA4431845 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431845|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:58Z|INSDC status:public|Submitter Id:897f0620 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:897f0620 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 7#74 DN465656V:B10 Illumina sequencing of library DN465656V:B10 constructed from sample accession ERS1343294 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence GGTCGTGT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_7#74.cram cram 336626850.0 2244179.0 SC RUN 21115 7#74 0:75 1:75 A:87825164;C:79779356;G:79631566;T:89367083;N:23681 75 75     87825164 79779356 79631566 89367083 23681 ERX1884460 ERS1343294 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.95683 0.96064 0.13119 0.12727 0.67892 0.67955 0.47005 0.46207 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1366 1366 ERR1821967 ERX1884459 ERS1343293 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 inf 6hpi 7 SAMEA4431844 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431844|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:42:57Z|INSDC status:public|Submitter Id:89765390 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:89765390 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 7#73 DN465656V:A10 Illumina sequencing of library DN465656V:A10 constructed from sample accession ERS1343293 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence GCAACATT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_7#73.cram cram 320242950.0 2134953.0 SC RUN 21115 7#73 0:75 1:75 A:84132446;C:75309652;G:75169050;T:85609846;N:21956 75 75     84132446 75309652 75169050 85609846 21956 ERX1884459 ERS1343293 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.95625 0.96001 0.13066 0.12619 0.68008 0.68008 0.47241 0.48273 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1368 1368 ERR1821965 ERX1884457 ERS1343291 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 mock 6hpi 24 SAMEA4431842 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431842|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:55Z|INSDC status:public|Submitter Id:896563a0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:896563a0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 7#71 DN465656V:G9 Illumina sequencing of library DN465656V:G9 constructed from sample accession ERS1343291 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence GTGTCCTT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_7#71.cram cram 365379750.0 2435865.0 SC RUN 21115 7#71 0:75 1:75 A:96293094;C:85807064;G:85406506;T:97847164;N:25922 75 75     96293094 85807064 85406506 97847164 25922 ERX1884457 ERS1343291 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.95424 0.95742 0.12954 0.12555 0.67874 0.68049 0.47358 0.47009 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1371 1371 ERR1821962 ERX1884454 ERS1343288 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 inf 6hpi 4 SAMEA4431839 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431839|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:53Z|INSDC status:public|Submitter Id:894a1370 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:894a1370 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 7#68 DN465656V:D9 Illumina sequencing of library DN465656V:D9 constructed from sample accession ERS1343288 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence TGCGTGAA. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_7#68.cram cram 331162800.0 2207752.0 SC RUN 21115 7#68 0:75 1:75 A:85794412;C:79101880;G:78952864;T:87291049;N:22595 75 75     85794412 79101880 78952864 87291049 22595 ERX1884454 ERS1343288 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.9592 0.96321 0.13082 0.12596 0.68038 0.68081 0.47174 0.46616 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1372 1372 ERR1821961 ERX1884453 ERS1343287 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 mock 6hpi 3 SAMEA4431838 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431838|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:42:52Z|INSDC status:public|Submitter Id:8940c4a0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8940c4a0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 7#67 DN465656V:C9 Illumina sequencing of library DN465656V:C9 constructed from sample accession ERS1343287 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence TACCACCA. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_7#67.cram cram 331205700.0 2208038.0 SC RUN 21115 7#67 0:75 1:75 A:86616306;C:78329975;G:78118373;T:88118620;N:22426 75 75     86616306 78329975 78118373 88118620 22426 ERX1884453 ERS1343287 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.95751 0.96214 0.12537 0.1204 0.68878 0.68858 0.48537 0.4863 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1373 1373 ERR1821960 ERX1884452 ERS1343286 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 inf 6hpi 10 SAMEA4431837 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431837|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:42:51Z|INSDC status:public|Submitter Id:8935ef30 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8935ef30 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 7#66 DN465656V:B9 Illumina sequencing of library DN465656V:B9 constructed from sample accession ERS1343286 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence TGAAGCCA. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_7#66.cram cram 360167100.0 2401114.0 SC RUN 21115 7#66 0:75 1:75 A:93582225;C:85848013;G:85581536;T:95129867;N:25459 75 75     93582225 85848013 85581536 95129867 25459 ERX1884452 ERS1343286 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.95821 0.96111 0.11971 0.11519 0.68724 0.6868 0.48254 0.48898 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1375 1375 ERR1821958 ERX1884450 ERS1343284 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 mock 6hpi 16 SAMEA4431835 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431835|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:49Z|INSDC status:public|Submitter Id:8924ff40 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8924ff40 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 7#64 DN465656V:H8 Illumina sequencing of library DN465656V:H8 constructed from sample accession ERS1343284 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence TCTCTTCA. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_7#64.cram cram 336721200.0 2244808.0 SC RUN 21115 7#64 0:75 1:75 A:86735439;C:80977534;G:80814443;T:88171542;N:22242 75 75     86735439 80977534 80814443 88171542 22242 ERX1884450 ERS1343284 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.96051 0.96429 0.12669 0.12257 0.69051 0.69016 0.46539 0.46826 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1376 1376 ERR1821957 ERX1884449 ERS1343283 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 inf 6hpi 6 SAMEA4431834 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431834|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:49Z|INSDC status:public|Submitter Id:891c73c0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:891c73c0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 7#63 DN465656V:G8 Illumina sequencing of library DN465656V:G8 constructed from sample accession ERS1343283 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence TGTGAAGA. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_7#63.cram cram 369606300.0 2464042.0 SC RUN 21115 7#63 0:75 1:75 A:95298069;C:88862861;G:88512446;T:96907144;N:25780 75 75     95298069 88862861 88512446 96907144 25780 ERX1884449 ERS1343283 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.96106 0.96546 0.11794 0.11434 0.69753 0.69858 0.48929 0.48595 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1377 1377 ERR1821956 ERX1884448 ERS1343282 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 inf 6hpi 21 SAMEA4431833 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431833|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:42:48Z|INSDC status:public|Submitter Id:8913e840 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8913e840 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 7#62 DN465656V:F8 Illumina sequencing of library DN465656V:F8 constructed from sample accession ERS1343282 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence TAGACGGA. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_7#62.cram cram 318946500.0 2126310.0 SC RUN 21115 7#62 0:75 1:75 A:83294172;C:75546488;G:75378597;T:84706371;N:20872 75 75     83294172 75546488 75378597 84706371 20872 ERX1884448 ERS1343282 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.95837 0.96123 0.13023 0.12538 0.6813 0.68189 0.47495 0.47596 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1378 1378 ERR1821955 ERX1884447 ERS1343281 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 mock 6hpi 21 SAMEA4431832 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431832|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:47Z|INSDC status:public|Submitter Id:890b5cc0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:890b5cc0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 7#61 DN465656V:E8 Illumina sequencing of library DN465656V:E8 constructed from sample accession ERS1343281 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence TGCTGATA. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_7#61.cram cram 348135150.0 2320901.0 SC RUN 21115 7#61 0:75 1:75 A:91572265;C:81811057;G:81549256;T:93177722;N:24850 75 75     91572265 81811057 81549256 93177722 24850 ERX1884447 ERS1343281 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.95568 0.95891 0.12837 0.12239 0.67754 0.67716 0.47787 0.47701 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1381 1381 ERR1821952 ERX1884444 ERS1343278 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 inf 6hpi 3 SAMEA4431829 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431829|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:42:44Z|INSDC status:public|Submitter Id:88f0a8d0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:88f0a8d0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 7#58 DN465656V:B8 Illumina sequencing of library DN465656V:B8 constructed from sample accession ERS1343278 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence TGACAGAC. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_7#58.cram cram 328086150.0 2187241.0 SC RUN 21115 7#58 0:75 1:75 A:85080319;C:78326244;G:78231894;T:86424790;N:22903 75 75     85080319 78326244 78231894 86424790 22903 ERX1884444 ERS1343278 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.95723 0.96059 0.1249 0.12125 0.67438 0.67363 0.47214 0.47571 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1382 1382 ERR1821951 ERX1884443 ERS1343277 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 mock 6hpi 4 SAMEA4431828 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431828|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:44Z|INSDC status:public|Submitter Id:88e81d50 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:88e81d50 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 7#57 DN465656V:A8 Illumina sequencing of library DN465656V:A8 constructed from sample accession ERS1343277 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence TCTACGAC. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_7#57.cram cram 342888600.0 2285924.0 SC RUN 21115 7#57 0:75 1:75 A:89589944;C:81204257;G:80998953;T:91071349;N:24097 75 75     89589944 81204257 80998953 91071349 24097 ERX1884443 ERS1343277 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.95568 0.95951 0.11882 0.11586 0.68071 0.68083 0.47558 0.47205 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1385 1385 ERR1821948 ERX1884440 ERS1343274 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 mock 6hpi 5 SAMEA4431825 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431825|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:41Z|INSDC status:public|Submitter Id:88ce7ad0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:88ce7ad0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 7#54 DN465656V:F7 Illumina sequencing of library DN465656V:F7 constructed from sample accession ERS1343274 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence TGTTCTCC. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_7#54.cram cram 311123100.0 2074154.0 SC RUN 21115 7#54 0:75 1:75 A:80977085;C:73956503;G:73826166;T:82342166;N:21180 75 75     80977085 73956503 73826166 82342166 21180 ERX1884440 ERS1343274 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.95727 0.96199 0.126 0.12217 0.68071 0.68073 0.48334 0.48234 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1388 1388 ERR1821945 ERX1884437 ERS1343271 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 mock 6hpi 22 SAMEA4431822 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431822|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:38Z|INSDC status:public|Submitter Id:88b4ff60 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:88b4ff60 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 7#51 DN465656V:C7 Illumina sequencing of library DN465656V:C7 constructed from sample accession ERS1343271 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence TTACTCGC. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_7#51.cram cram 340949700.0 2272998.0 SC RUN 21115 7#51 0:75 1:75 A:88760980;C:81019440;G:80840504;T:90302998;N:25778 75 75     88760980 81019440 80840504 90302998 25778 ERX1884437 ERS1343271 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.95837 0.96259 0.11867 0.11452 0.69337 0.69382 0.48444 0.4906 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1393 1393 ERR1821940 ERX1884432 ERS1343266 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 mock 6hpi 18 SAMEA4431817 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431817|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:42:34Z|INSDC status:public|Submitter Id:8888e650 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8888e650 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 7#46 DN465656V:F6 Illumina sequencing of library DN465656V:F6 constructed from sample accession ERS1343266 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence TCAGATTC. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_7#46.cram cram 330055050.0 2200367.0 SC RUN 21115 7#46 0:75 1:75 A:85481444;C:78898716;G:78797938;T:86854377;N:22575 75 75     85481444 78898716 78797938 86854377 22575 ERX1884432 ERS1343266 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.95991 0.96358 0.11884 0.11578 0.68284 0.68434 0.47867 0.48444 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1394 1394 ERR1821939 ERX1884431 ERS1343265 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 mock 6hpi 17 SAMEA4431816 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431816|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:33Z|INSDC status:public|Submitter Id:88805ad0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:88805ad0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 7#45 DN465656V:E6 Illumina sequencing of library DN465656V:E6 constructed from sample accession ERS1343265 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence TATGCCAG. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_7#45.cram cram 345969900.0 2306466.0 SC RUN 21115 7#45 0:75 1:75 A:90927344;C:81421201;G:81202158;T:92396072;N:23125 75 75     90927344 81421201 81202158 92396072 23125 ERX1884431 ERS1343265 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.95523 0.9594 0.12879 0.12441 0.68371 0.68245 0.48658 0.47772 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1398 1398 ERR1821935 ERX1884427 ERS1343261 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 inf 6hpi 17 SAMEA4431812 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431812|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:30Z|INSDC status:public|Submitter Id:885e05c0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:885e05c0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 7#41 DN465656V:A6 Illumina sequencing of library DN465656V:A6 constructed from sample accession ERS1343261 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence TCCAGTCG. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_7#41.cram cram 328126350.0 2187509.0 SC RUN 21115 7#41 0:75 1:75 A:84642756;C:78721382;G:78649568;T:86088943;N:23701 75 75     84642756 78721382 78649568 86088943 23701 ERX1884427 ERS1343261 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.95948 0.9638 0.13772 0.13476 0.67886 0.67923 0.4859 0.47157 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1403 1403 ERR1821930 ERX1884422 ERS1343256 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 mock 6hpi 14 SAMEA4431807 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431807|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:26Z|INSDC status:public|Submitter Id:8832fe20 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8832fe20 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 7#36 DN465656V:D5 Illumina sequencing of library DN465656V:D5 constructed from sample accession ERS1343256 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence TGAACTGG. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_7#36.cram cram 339549600.0 2263664.0 SC RUN 21115 7#36 0:75 1:75 A:86935886;C:82184115;G:82019061;T:88386477;N:24061 75 75     86935886 82184115 82019061 88386477 24061 ERX1884422 ERS1343256 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.9625 0.96656 0.10814 0.10457 0.69077 0.69104 0.48142 0.47703 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1405 1405 ERR1821928 ERX1884420 ERS1343254 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 mock 6hpi 6 SAMEA4431805 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431805|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:24Z|INSDC status:public|Submitter Id:882171f0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:882171f0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 7#34 DN465656V:B5 Illumina sequencing of library DN465656V:B5 constructed from sample accession ERS1343254 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence TAACGCTG. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_7#34.cram cram 340225350.0 2268169.0 SC RUN 21115 7#34 0:75 1:75 A:89140873;C:80359815;G:80091727;T:90609762;N:23173 75 75     89140873 80359815 80091727 90609762 23173 ERX1884420 ERS1343254 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.95688 0.96041 0.11971 0.11541 0.68674 0.68718 0.47042 0.47524 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1408 1408 ERR1821925 ERX1884417 ERS1343251 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 inf 6hpi 19 SAMEA4431802 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431802|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:22Z|INSDC status:public|Submitter Id:8809cb40 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8809cb40 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 7#31 DN465656V:G4 Illumina sequencing of library DN465656V:G4 constructed from sample accession ERS1343251 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence TAGTCTTG. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_7#31.cram cram 338695950.0 2257973.0 SC RUN 21115 7#31 0:75 1:75 A:88637707;C:80089055;G:79880255;T:90066042;N:22891 75 75     88637707 80089055 79880255 90066042 22891 ERX1884417 ERS1343251 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.95645 0.96094 0.13554 0.1313 0.67907 0.68008 0.4806 0.48064 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1410 1410 ERR1821923 ERX1884415 ERS1343249 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 inf 6hpi 1 SAMEA4431800 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431800|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:20Z|INSDC status:public|Submitter Id:87fb2540 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:87fb2540 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 7#29 DN465656V:E4 Illumina sequencing of library DN465656V:E4 constructed from sample accession ERS1343249 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence TCCTCAAT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_7#29.cram cram 366322350.0 2442149.0 SC RUN 21115 7#29 0:75 1:75 A:94017056;C:88415257;G:88329033;T:95536586;N:24418 75 75     94017056 88415257 88329033 95536586 24418 ERX1884415 ERS1343249 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.95967 0.96398 0.12878 0.12562 0.6826 0.68227 0.47576 0.4828 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1411 1411 ERR1821922 ERX1884414 ERS1343248 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 mock 6hpi 9 SAMEA4431799 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431799|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:19Z|INSDC status:public|Submitter Id:87f3ab30 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:87f3ab30 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 7#28 DN465656V:D4 Illumina sequencing of library DN465656V:D4 constructed from sample accession ERS1343248 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence TACAGGAT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_7#28.cram cram 364518600.0 2430124.0 SC RUN 21115 7#28 0:75 1:75 A:95092411;C:86578092;G:86167378;T:96656365;N:24354 75 75     95092411 86578092 86167378 96656365 24354 ERX1884414 ERS1343248 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.95832 0.96248 0.12173 0.1165 0.68927 0.69014 0.48572 0.48471 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1412 1412 ERR1821921 ERX1884413 ERS1343247 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 mock 6hpi 13 SAMEA4431798 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431798|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:18Z|INSDC status:public|Submitter Id:87ec3120 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:87ec3120 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 7#27 DN465656V:C4 Illumina sequencing of library DN465656V:C4 constructed from sample accession ERS1343247 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence TAGTGACT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_7#27.cram cram 354481650.0 2363211.0 SC RUN 21115 7#27 0:75 1:75 A:91732533;C:84785566;G:84645818;T:93293392;N:24341 75 75     91732533 84785566 84645818 93293392 24341 ERX1884413 ERS1343247 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.96029 0.96432 0.1188 0.11522 0.68047 0.6818 0.4676 0.46541 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1413 1413 ERR1821920 ERX1884412 ERS1343246 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 mock 6hpi 15 SAMEA4431797 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431797|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:42:17Z|INSDC status:public|Submitter Id:87e4de20 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:87e4de20 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 7#26 DN465656V:B4 Illumina sequencing of library DN465656V:B4 constructed from sample accession ERS1343246 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence TTCCTGCT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_7#26.cram cram 331984500.0 2213230.0 SC RUN 21115 7#26 0:75 1:75 A:86348725;C:78998309;G:78858826;T:87756035;N:22605 75 75     86348725 78998309 78858826 87756035 22605 ERX1884412 ERS1343246 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.95887 0.96214 0.11962 0.11489 0.6815 0.68148 0.47571 0.47326 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1414 1414 ERR1821919 ERX1884411 ERS1343245 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 mock 6hpi 20 SAMEA4431796 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431796|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:16Z|INSDC status:public|Submitter Id:87dc2b90 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:87dc2b90 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 7#25 DN465656V:A4 Illumina sequencing of library DN465656V:A4 constructed from sample accession ERS1343245 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence TGCGATCT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_7#25.cram cram 320720700.0 2138138.0 SC RUN 21115 7#25 0:75 1:75 A:84088856;C:75649711;G:75458666;T:85500924;N:22543 75 75     84088856 75649711 75458666 85500924 22543 ERX1884411 ERS1343245 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.95593 0.95888 0.12916 0.12423 0.68448 0.68294 0.48286 0.48538 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1415 1415 ERR1821918 ERX1884410 ERS1343244 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 inf 6hpi 22 SAMEA4431795 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431795|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:16Z|INSDC status:public|Submitter Id:87d4d890 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:87d4d890 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 7#24 DN465656V:H3 Illumina sequencing of library DN465656V:H3 constructed from sample accession ERS1343244 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence TTGACTCT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_7#24.cram cram 401229000.0 2674860.0 SC RUN 21115 7#24 0:75 1:75 A:104380185;C:95588978;G:95185797;T:106047162;N:26878 75 75     104380185 95588978 95185797 106047162 26878 ERX1884410 ERS1343244 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.95821 0.96231 0.11999 0.11696 0.68109 0.68183 0.48041 0.47251 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1417 1417 ERR1821916 ERX1884408 ERS1343242 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 mock 6hpi 11 SAMEA4431793 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431793|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:14Z|INSDC status:public|Submitter Id:87c5e470 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:87c5e470 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 7#22 DN465656V:F3 Illumina sequencing of library DN465656V:F3 constructed from sample accession ERS1343242 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence TGATACGT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_7#22.cram cram 354227550.0 2361517.0 SC RUN 21115 7#22 0:75 1:75 A:93246529;C:83230502;G:82935819;T:94790120;N:24580 75 75     93246529 83230502 82935819 94790120 24580 ERX1884408 ERS1343242 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.95696 0.96069 0.12744 0.12223 0.67754 0.67738 0.47384 0.47366 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1418 1418 ERR1821915 ERX1884407 ERS1343241 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 inf 6hpi 9 SAMEA4431792 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431792|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:13Z|INSDC status:public|Submitter Id:87be1c40 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:87be1c40 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 7#21 DN465656V:E3 Illumina sequencing of library DN465656V:E3 constructed from sample accession ERS1343241 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence TCGAGCGT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_7#21.cram cram 332916150.0 2219441.0 SC RUN 21115 7#21 0:75 1:75 A:86106400;C:79663230;G:79547867;T:87574639;N:24014 75 75     86106400 79663230 79547867 87574639 24014 ERX1884407 ERS1343241 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.95985 0.96377 0.12288 0.11903 0.68532 0.68523 0.47121 0.47269 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1419 1419 ERR1821914 ERX1884406 ERS1343240 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 mock 6hpi 1 SAMEA4431791 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431791|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:12Z|INSDC status:public|Submitter Id:87b6f050 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:87b6f050 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 7#20 DN465656V:D3 Illumina sequencing of library DN465656V:D3 constructed from sample accession ERS1343240 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence TTGGAGGT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_7#20.cram cram 337598700.0 2250658.0 SC RUN 21115 7#20 0:75 1:75 A:86997927;C:81096038;G:81038067;T:88443426;N:23242 75 75     86997927 81096038 81038067 88443426 23242 ERX1884406 ERS1343240 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.96164 0.96613 0.1238 0.12027 0.68769 0.68797 0.47914 0.47027 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1422 1422 ERR1821911 ERX1884403 ERS1343237 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 inf 6hpi 13 SAMEA4431788 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431788|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:10Z|INSDC status:public|Submitter Id:87a0d040 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:87a0d040 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 7#17 DN465656V:A3 Illumina sequencing of library DN465656V:A3 constructed from sample accession ERS1343237 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence TGTACCTT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_7#17.cram cram 265689750.0 1771265.0 SC RUN 21115 7#17 0:75 1:75 A:69761602;C:62539487;G:62444788;T:70924883;N:18990 75 75     69761602 62539487 62444788 70924883 18990 ERX1884403 ERS1343237 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.95599 0.95983 0.12869 0.12327 0.67925 0.68045 0.46923 0.46159 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1425 1425 ERR1821908 ERX1884400 ERS1343234 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 inf 6hpi 8 SAMEA4431785 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431785|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:07Z|INSDC status:public|Submitter Id:878ab030 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:878ab030 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 7#14 DN465656V:F2 Illumina sequencing of library DN465656V:F2 constructed from sample accession ERS1343234 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence TCTCGGTT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_7#14.cram cram 299481000.0 1996540.0 SC RUN 21115 7#14 0:75 1:75 A:77178332;C:71998773;G:71843576;T:78438313;N:22006 75 75     77178332 71998773 71843576 78438313 22006 ERX1884400 ERS1343234 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.96076 0.96422 0.12622 0.12165 0.68803 0.68891 0.47017 0.47616 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1428 1428 ERR1821905 ERX1884397 ERS1343231 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 inf 6hpi 14 SAMEA4431782 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431782|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:05Z|INSDC status:public|Submitter Id:877182e0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:877182e0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 7#11 DN465656V:C2 Illumina sequencing of library DN465656V:C2 constructed from sample accession ERS1343231 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence GGCTACAG. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_7#11.cram cram 320521950.0 2136813.0 SC RUN 21115 7#11 0:75 1:75 A:84018705;C:75695161;G:75424320;T:85360772;N:22992 75 75     84018705 75695161 75424320 85360772 22992 ERX1884397 ERS1343231 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.95781 0.96265 0.11883 0.11449 0.68613 0.68724 0.48729 0.48412 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1429 1429 ERR1821904 ERX1884396 ERS1343230 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 mock 6hpi 19 SAMEA4431781 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431781|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:04Z|INSDC status:public|Submitter Id:876a08d0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:876a08d0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 7#10 DN465656V:B2 Illumina sequencing of library DN465656V:B2 constructed from sample accession ERS1343230 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence TAGCTTGT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_7#10.cram cram 341330550.0 2275537.0 SC RUN 21115 7#10 0:75 1:75 A:88881827;C:81100577;G:80952610;T:90372489;N:23047 75 75     88881827 81100577 80952610 90372489 23047 ERX1884396 ERS1343230 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.95807 0.9608 0.13472 0.13072 0.67943 0.68164 0.47486 0.47528 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1434 1434 ERR1821899 ERX1884391 ERS1343225 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 mock 6hpi 23 SAMEA4431776 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431776|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:41:59Z|INSDC status:public|Submitter Id:87436e00 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:87436e00 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 7#5 DN465656V:E1 Illumina sequencing of library DN465656V:E1 constructed from sample accession ERS1343225 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence ACAGTGGT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_7#5.cram cram 310863300.0 2072422.0 SC RUN 21115 7#5 0:75 1:75 A:82882606;C:72122589;G:71664609;T:84171411;N:22085 75 75     82882606 72122589 71664609 84171411 22085 ERX1884391 ERS1343225 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.95338 0.95787 0.13123 0.12617 0.68124 0.68245 0.47344 0.47269 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1436 1436 ERR1821897 ERX1884389 ERS1343223 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 inf 6hpi 15 SAMEA4431774 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431774|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:41:57Z|INSDC status:public|Submitter Id:8720cad0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8720cad0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 7#3 DN465656V:C1 Illumina sequencing of library DN465656V:C1 constructed from sample accession ERS1343223 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence TTAGGCAT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_7#3.cram cram 317589600.0 2117264.0 SC RUN 21115 7#3 0:75 1:75 A:83402478;C:74821194;G:74551562;T:84791784;N:22582 75 75     83402478 74821194 74551562 84791784 22582 ERX1884389 ERS1343223 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.95433 0.95912 0.13446 0.13088 0.67732 0.67829 0.47951 0.4764 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1437 1437 ERR1821896 ERX1884388 ERS1343222 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 inf 6hpi 18 SAMEA4431773 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431773|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:41:56Z|INSDC status:public|Submitter Id:870f65b0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:870f65b0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 7#2 DN465656V:B1 Illumina sequencing of library DN465656V:B1 constructed from sample accession ERS1343222 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence CGATGTTT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_7#2.cram cram 293577000.0 1957180.0 SC RUN 21115 7#2 0:75 1:75 A:77750011;C:68531930;G:68273993;T:79000857;N:20209 75 75     77750011 68531930 68273993 79000857 20209 ERX1884388 ERS1343222 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.95171 0.95589 0.13816 0.13514 0.67629 0.67547 0.47871 0.46646 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1438 1438 ERR1821895 ERX1884387 ERS1343221 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 inf 6hpi 5 SAMEA4431772 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431772|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:41:55Z|INSDC status:public|Submitter Id:86fb1a60 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:86fb1a60 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 7#1 DN465656V:A1 Illumina sequencing of library DN465656V:A1 constructed from sample accession ERS1343221 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 7. This submission includes reads tagged with the sequence ATCACGTT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_7#1.cram cram 312615300.0 2084102.0 SC RUN 21115 7#1 0:75 1:75 A:82010578;C:73778620;G:73476362;T:83328293;N:21447 75 75     82010578 73778620 73476362 83328293 21447 ERX1884387 ERS1343221 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.95424 0.95872 0.13615 0.13291 0.67848 0.67821 0.48083 0.47719 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1439 1439 ERR1821894 ERX1884386 ERS1343316 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 mock 6hpi 7 SAMEA4431867 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431867|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:43:16Z|INSDC status:public|Submitter Id:8a3d4d10 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8a3d4d10 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 6#96 DN465656V:H12 Illumina sequencing of library DN465656V:H12 constructed from sample accession ERS1343316 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 6. This submission includes reads tagged with the sequence GTCTTGGC. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_6#96.cram cram 345081000.0 2300540.0 SC RUN 21115 6#96 0:75 1:75 A:91644012;C:80503625;G:79946465;T:92962207;N:24691 75 75     91644012 80503625 79946465 92962207 24691 ERX1884386 ERS1343316 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.95678 0.95935 0.12884 0.12331 0.68917 0.68915 0.49222 0.48959 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1440 1440 ERR1821893 ERX1884385 ERS1343315 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 inf 6hpi 11 SAMEA4431866 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431866|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:43:15Z|INSDC status:public|Submitter Id:8a34c190 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8a34c190 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 6#95 DN465656V:G12 Illumina sequencing of library DN465656V:G12 constructed from sample accession ERS1343315 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 6. This submission includes reads tagged with the sequence GATTCATC. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_6#95.cram cram 363186300.0 2421242.0 SC RUN 21115 6#95 0:75 1:75 A:95668966;C:85460566;G:85017029;T:97014320;N:25419 75 75     95668966 85460566 85017029 97014320 25419 ERX1884385 ERS1343315 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.9539 0.95767 0.13011 0.12612 0.68091 0.68193 0.47262 0.45237 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1441 1441 ERR1821892 ERX1884384 ERS1343314 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 mock 6hpi 10 SAMEA4431865 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431865|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:43:15Z|INSDC status:public|Submitter Id:8a2c5d20 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8a2c5d20 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 6#94 DN465656V:F12 Illumina sequencing of library DN465656V:F12 constructed from sample accession ERS1343314 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 6. This submission includes reads tagged with the sequence GCTAACTC. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_6#94.cram cram 309097650.0 2060651.0 SC RUN 21115 6#94 0:75 1:75 A:81793149;C:72286091;G:71961662;T:83034568;N:22180 75 75     81793149 72286091 71961662 83034568 22180 ERX1884384 ERS1343314 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.95476 0.95776 0.12772 0.12255 0.68357 0.68359 0.47391 0.47015 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1442 1442 ERR1821891 ERX1884383 ERS1343313 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 mock 6hpi 8 SAMEA4431864 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431864|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:43:14Z|INSDC status:public|Submitter Id:8a23d1a0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8a23d1a0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 6#93 DN465656V:E12 Illumina sequencing of library DN465656V:E12 constructed from sample accession ERS1343313 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 6. This submission includes reads tagged with the sequence GCACTGTC. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_6#93.cram cram 351111150.0 2340741.0 SC RUN 21115 6#93 0:75 1:75 A:90046066;C:84850979;G:84793542;T:91396973;N:23590 75 75     90046066 84850979 84793542 91396973 23590 ERX1884383 ERS1343313 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.96371 0.96695 0.12566 0.12315 0.68984 0.69177 0.48155 0.47873 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1445 1445 ERR1821888 ERX1884380 ERS1343310 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 inf 6hpi 23 SAMEA4431861 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431861|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:43:11Z|INSDC status:public|Submitter Id:8a0a0810 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8a0a0810 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 6#90 DN465656V:B12 Illumina sequencing of library DN465656V:B12 constructed from sample accession ERS1343310 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 6. This submission includes reads tagged with the sequence GCAATCCG. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_6#90.cram cram 327176100.0 2181174.0 SC RUN 21115 6#90 0:75 1:75 A:85797808;C:77208746;G:76973605;T:87174350;N:21591 75 75     85797808 77208746 76973605 87174350 21591 ERX1884380 ERS1343310 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.95524 0.95895 0.12923 0.12528 0.6785 0.67669 0.4702 0.47308 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1447 1447 ERR1821886 ERX1884378 ERS1343308 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 inf 6hpi 24 SAMEA4431859 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431859|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:43:10Z|INSDC status:public|Submitter Id:89f8ca00 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:89f8ca00 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 6#88 DN465656V:H11 Illumina sequencing of library DN465656V:H11 constructed from sample accession ERS1343308 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 6. This submission includes reads tagged with the sequence GATAGAGG. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_6#88.cram cram 342069750.0 2280465.0 SC RUN 21115 6#88 0:75 1:75 A:90927679;C:79641770;G:79198404;T:92279313;N:22584 75 75     90927679 79641770 79198404 92279313 22584 ERX1884378 ERS1343308 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.95225 0.95552 0.13847 0.13441 0.67586 0.67647 0.47759 0.47668 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1449 1449 ERR1821884 ERX1884376 ERS1343306 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 mock 6hpi 2 SAMEA4431857 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431857|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:43:08Z|INSDC status:public|Submitter Id:89e7b300 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:89e7b300 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 6#86 DN465656V:F11 Illumina sequencing of library DN465656V:F11 constructed from sample accession ERS1343306 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 6. This submission includes reads tagged with the sequence GTTGTCGG. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_6#86.cram cram 297494250.0 1983295.0 SC RUN 21115 6#86 0:75 1:75 A:78113837;C:70164429;G:69789398;T:79405552;N:21034 75 75     78113837 70164429 69789398 79405552 21034 ERX1884376 ERS1343306 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.95656 0.96096 0.12219 0.11713 0.68639 0.68594 0.47263 0.44681 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1450 1450 ERR1821883 ERX1884375 ERS1343305 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 inf 6hpi 16 SAMEA4431856 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431856|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:43:07Z|INSDC status:public|Submitter Id:89de3d20 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:89de3d20 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 6#85 DN465656V:E11 Illumina sequencing of library DN465656V:E11 constructed from sample accession ERS1343305 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 6. This submission includes reads tagged with the sequence GAGGATGG. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_6#85.cram cram 360064650.0 2400431.0 SC RUN 21115 6#85 0:75 1:75 A:93791078;C:85632703;G:85403247;T:95212006;N:25616 75 75     93791078 85632703 85403247 95212006 25616 ERX1884375 ERS1343305 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.96051 0.96334 0.13052 0.12588 0.69838 0.69867 0.49124 0.49014 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1451 1451 ERR1821882 ERX1884374 ERS1343304 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 inf 6hpi 2 SAMEA4431855 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431855|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:43:06Z|INSDC status:public|Submitter Id:89d58a90 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:89d58a90 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 6#84 DN465656V:D11 Illumina sequencing of library DN465656V:D11 constructed from sample accession ERS1343304 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 6. This submission includes reads tagged with the sequence GTAAGGTG. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_6#84.cram cram 342419700.0 2282798.0 SC RUN 21115 6#84 0:75 1:75 A:88339298;C:82188635;G:82099822;T:89767401;N:24544 75 75     88339298 82188635 82099822 89767401 24544 ERX1884374 ERS1343304 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.9594 0.9639 0.12263 0.11953 0.6874 0.6882 0.47923 0.47477 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1453 1453 ERR1821880 ERX1884372 ERS1343302 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 mock 6hpi 12 SAMEA4431853 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431853|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:43:05Z|INSDC status:public|Submitter Id:89c3fe60 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:89c3fe60 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 6#82 DN465656V:B11 Illumina sequencing of library DN465656V:B11 constructed from sample accession ERS1343302 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 6. This submission includes reads tagged with the sequence GAGCCAAT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_6#82.cram cram 339271800.0 2261812.0 SC RUN 21115 6#82 0:75 1:75 A:89689630;C:79346388;G:78967007;T:91244790;N:23985 75 75     89689630 79346388 78967007 91244790 23985 ERX1884372 ERS1343302 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.95414 0.958 0.12425 0.11988 0.68483 0.6844 0.47108 0.4771 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1459 1459 ERR1821874 ERX1884366 ERS1343296 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 inf 6hpi 12 SAMEA4431847 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431847|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:59Z|INSDC status:public|Submitter Id:89901d20 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:89901d20 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 6#76 DN465656V:D10 Illumina sequencing of library DN465656V:D10 constructed from sample accession ERS1343296 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 6. This submission includes reads tagged with the sequence GTACATCT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_6#76.cram cram 318161250.0 2121075.0 SC RUN 21115 6#76 0:75 1:75 A:83280615;C:75193091;G:74975360;T:84689631;N:22553 75 75     83280615 75193091 74975360 84689631 22553 ERX1884366 ERS1343296 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.956 0.95977 0.1314 0.12784 0.67462 0.67566 0.47969 0.47717 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1461 1461 ERR1821872 ERX1884364 ERS1343294 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 inf 6hpi 20 SAMEA4431845 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431845|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:58Z|INSDC status:public|Submitter Id:897f0620 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:897f0620 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 6#74 DN465656V:B10 Illumina sequencing of library DN465656V:B10 constructed from sample accession ERS1343294 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 6. This submission includes reads tagged with the sequence GGTCGTGT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_6#74.cram cram 335698050.0 2237987.0 SC RUN 21115 6#74 0:75 1:75 A:87573533;C:79562687;G:79433179;T:89103801;N:24850 75 75     87573533 79562687 79433179 89103801 24850 ERX1884364 ERS1343294 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.95677 0.96007 0.13015 0.12574 0.67852 0.67927 0.4713 0.46763 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1462 1462 ERR1821871 ERX1884363 ERS1343293 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 inf 6hpi 7 SAMEA4431844 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431844|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:42:57Z|INSDC status:public|Submitter Id:89765390 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:89765390 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 6#73 DN465656V:A10 Illumina sequencing of library DN465656V:A10 constructed from sample accession ERS1343293 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 6. This submission includes reads tagged with the sequence GCAACATT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_6#73.cram cram 319905450.0 2132703.0 SC RUN 21115 6#73 0:75 1:75 A:84048036;C:75245962;G:75099754;T:85489648;N:22050 75 75     84048036 75245962 75099754 85489648 22050 ERX1884363 ERS1343293 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.95622 0.95951 0.1318 0.12701 0.67795 0.67963 0.4715 0.47342 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1464 1464 ERR1821869 ERX1884361 ERS1343291 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 mock 6hpi 24 SAMEA4431842 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431842|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:55Z|INSDC status:public|Submitter Id:896563a0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:896563a0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 6#71 DN465656V:G9 Illumina sequencing of library DN465656V:G9 constructed from sample accession ERS1343291 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 6. This submission includes reads tagged with the sequence GTGTCCTT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_6#71.cram cram 364560150.0 2430401.0 SC RUN 21115 6#71 0:75 1:75 A:96055007;C:85612712;G:85259174;T:97609215;N:24042 75 75     96055007 85612712 85259174 97609215 24042 ERX1884361 ERS1343291 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.95536 0.95788 0.12936 0.12341 0.67886 0.67974 0.4774 0.47257 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1467 1467 ERR1821866 ERX1884358 ERS1343288 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 inf 6hpi 4 SAMEA4431839 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 02|ENA last update:2016 09 12|External Id:SAMEA4431839|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 02T09:08:56Z|INSDC last update:2016 09 12T10:42:53Z|INSDC status:public|Submitter Id:894a1370 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salm1lla typhimurium pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:894a1370 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 6#68 DN465656V:D9 Illumina sequencing of library DN465656V:D9 constructed from sample accession ERS1343288 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 6. This submission includes reads tagged with the sequence TGCGTGAA. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_6#68.cram cram 330650550.0 2204337.0 SC RUN 21115 6#68 0:75 1:75 A:85657332;C:79003383;G:78841297;T:87126221;N:22317 75 75     85657332 79003383 78841297 87126221 22317 ERX1884358 ERS1343288 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.96025 0.96277 0.13225 0.12688 0.68028 0.68 0.46939 0.47625 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure
1468 1468 ERR1821865 ERX1884357 ERS1343287 ERP012128 PRJEB10833 RNASeq of zebrafish embryos infected with pathogens RNASeq_of_zebrafish_embryos_infected_with_pathogens-sc-3907 Transcriptome Analysis Zebrafish embryos were challenged with a range of pathogens and their mRNA expression profiles compared to mock challenged siblings using whole embryo RNA seq ArrayExpress:E ERAD 428     zmp ph263 mock 6hpi 3 SAMEA4431838 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec Hatching:Pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 07|ENA last update:2016 09 12|External Id:SAMEA4431838|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 07T17:01:29Z|INSDC last update:2016 09 12T10:42:52Z|INSDC status:public|Submitter Id:8940c4a0 74d8 11e6 a83e 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 Ambion.|sample name:8940c4a0 74d8 11e6 a83e 3c4a9275d6c8|strain:TLF                 Illumina HiSeq 2500 paired end sequencing SC EXP 21115 6#67 DN465656V:C9 Illumina sequencing of library DN465656V:C9 constructed from sample accession ERS1343287 for study accession ERP012128. This is part of an Illumina multiplexed sequencing run 21115 6. This submission includes reads tagged with the sequence TACCACCA. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012128 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2017 02 07|ENA LAST UPDATE:2018 11 16 21115_6#67.cram cram 331194900.0 2207966.0 SC RUN 21115 6#67 0:75 1:75 A:86614461;C:78323515;G:78115873;T:88117431;N:23620 75 75     86614461 78323515 78115873 88117431 23620 ERX1884357 ERS1343287 ERA808852 European Nucleotide Archive Wellcome Sanger Institute 2 0.95806 0.9617 0.12558 0.12074 0.68615 0.68542 0.47351 0.47234 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-09-12 Hatching Embryo Fin Surface Structure

Next page

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;