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run_metadata

96 rows where experiment.library_source = "TRANSCRIPTOMIC", technology = "generic-scrnaseq-only" and tissue_curation_coarse = "Cancer or Tumor"

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tissue_curation_coarse 1

  • Cancer or Tumor · 96 ✖

tissue_curation 1

technology 1

  • generic-scrnaseq-only · 96 ✖

experiment.platform 1

experiment.library_strategy 1

experiment.library_source 1

  • TRANSCRIPTOMIC · 96 ✖

experiment.library_selection 1

experiment.library_layout 1

devstage_curation_coarse 1

devstage_curation 1

Link rowid ▼ run.accession experiment.accession sample.accession study.accession bioproject study.title study.alias study.type study.abstract study.attributes study.PMIDs sample.description sample.title sample.alias sample.centername sample.attributes GEOsample.title GEOsample.dataprocessing GEOsample.source GEOsample.treatmentprotocol GEOsample.extractprotocol GEOsample.growthprotocol GEOsample.characteristics GEOsample.accession experiment.title experiment.alias experiment.library_name experiment.design_description experiment.library_construction_protocol experiment.attributes experiment.library_strategy experiment.library_source experiment.library_selection experiment.library_layout experiment.platform experiment.instrument_model experiment.spot_descriptor experiment.study_ref run.title run.attributes run.filename run.semantic_name run.total_bases run.total_spots run.alias run.read_lengths run.base_counts run.r1_length run.r2_length run.r3_length run.r4_length run.Acount run.Ccount run.Gcount run.Tcount run.Ncount run.experiment run.pool_member submission.accession submission.srasource submission.bioprojectsource seqdetective.n_mates seqdetective.mapping_rate.mate1 seqdetective.mapping_rate.mate2 seqdetective.nofeature_rate.mate1 seqdetective.nofeature_rate.mate2 seqdetective.sparsity.mate1 seqdetective.sparsity.mate2 seqdetective.pos_strand_rate.mate1 seqdetective.pos_strand_rate.mate2 seqdetective.readlen.mate1 seqdetective.readlen.mate2 seqdetective.judgement.mate1 seqdetective.judgement.mate2 seqdetective.judgement.reason platform_family instrument_generation read_bias selection_class prep_kit sc_or_bulk tech_class technology tech_variant submission.bioprojectsource.country earliest_date devstage_curation devstage_curation_coarse tissue_curation tissue_curation_coarse
59889 59889 SRR12070806 SRX8598391 SRS6888926 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVitroCoCulturePRO C PRO GSM4632822   tissue:Zebrafish melanoma cell line|cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma InVitroCoCulturePRO C PRO Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma GSM4632822 GSM4632822: InVitroCoCulturePRO C PRO; Danio rerio; RNA Seq GSM4632822   1 none provided by the submitter GEO Accession:GSM4632822 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04362A_S29_L001_R1_001.fastq.gz BS04362A_S29_L001_R2_001.fastq.gz fastq fastq 1579857636.0 18807829.0 GSM4632822 r1 0:28 1:56 A:422473235;C:368142865;G:381571095;T:407185430;N:485011 28 56     422473235 368142865 381571095 407185430 485011 SRX8598391 SRS6888926 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00645 0.95173 0.00124 0.07241 0.98658 0.82321 0.37638 0.50111 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59890 59890 SRR12070807 SRX8598391 SRS6888926 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVitroCoCulturePRO C PRO GSM4632822   tissue:Zebrafish melanoma cell line|cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma InVitroCoCulturePRO C PRO Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma GSM4632822 GSM4632822: InVitroCoCulturePRO C PRO; Danio rerio; RNA Seq GSM4632822   1 none provided by the submitter GEO Accession:GSM4632822 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04365A_S32_L001_R1_001.fastq.gz BS04365A_S32_L001_R2_001.fastq.gz fastq fastq 1323460488.0 15755482.0 GSM4632822 r10 0:28 1:56 A:354343773;C:308387222;G:319154360;T:341159378;N:415755 28 56     354343773 308387222 319154360 341159378 415755 SRX8598391 SRS6888926 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00656 0.95277 0.00125 0.07333 0.98648 0.82173 0.33933 0.49364 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59891 59891 SRR12070808 SRX8598391 SRS6888926 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVitroCoCulturePRO C PRO GSM4632822   tissue:Zebrafish melanoma cell line|cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma InVitroCoCulturePRO C PRO Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma GSM4632822 GSM4632822: InVitroCoCulturePRO C PRO; Danio rerio; RNA Seq GSM4632822   1 none provided by the submitter GEO Accession:GSM4632822 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04365A_S32_L002_R1_001.fastq.gz BS04365A_S32_L002_R2_001.fastq.gz fastq fastq 1285524408.0 15303862.0 GSM4632822 r11 0:28 1:56 A:344281208;C:299815192;G:310290587;T:331125346;N:12075 28 56     344281208 299815192 310290587 331125346 12075 SRX8598391 SRS6888926 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00629 0.95211 0.00131 0.07134 0.98715 0.82183 0.35381 0.50402 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59892 59892 SRR12070809 SRX8598391 SRS6888926 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVitroCoCulturePRO C PRO GSM4632822   tissue:Zebrafish melanoma cell line|cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma InVitroCoCulturePRO C PRO Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma GSM4632822 GSM4632822: InVitroCoCulturePRO C PRO; Danio rerio; RNA Seq GSM4632822   1 none provided by the submitter GEO Accession:GSM4632822 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04365A_S32_L003_R1_001.fastq.gz BS04365A_S32_L003_R2_001.fastq.gz fastq fastq 1224628188.0 14578907.0 GSM4632822 r12 0:28 1:56 A:327652897;C:285496906;G:295614924;T:315603941;N:259520 28 56     327652897 285496906 295614924 315603941 259520 SRX8598391 SRS6888926 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00626 0.95298 0.00116 0.07345 0.98701 0.82189 0.37759 0.50495 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59893 59893 SRR12070810 SRX8598391 SRS6888926 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVitroCoCulturePRO C PRO GSM4632822   tissue:Zebrafish melanoma cell line|cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma InVitroCoCulturePRO C PRO Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma GSM4632822 GSM4632822: InVitroCoCulturePRO C PRO; Danio rerio; RNA Seq GSM4632822   1 none provided by the submitter GEO Accession:GSM4632822 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04362A_S29_L002_R1_001.fastq.gz BS04362A_S29_L002_R2_001.fastq.gz fastq fastq 1533107268.0 18251277.0 GSM4632822 r2 0:28 1:56 A:410143735;C:357544615;G:370575788;T:394828238;N:14892 28 56     410143735 357544615 370575788 394828238 14892 SRX8598391 SRS6888926 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00654 0.95294 0.00142 0.07325 0.98646 0.8227 0.37757 0.50908 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59894 59894 SRR12070811 SRX8598391 SRS6888926 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVitroCoCulturePRO C PRO GSM4632822   tissue:Zebrafish melanoma cell line|cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma InVitroCoCulturePRO C PRO Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma GSM4632822 GSM4632822: InVitroCoCulturePRO C PRO; Danio rerio; RNA Seq GSM4632822   1 none provided by the submitter GEO Accession:GSM4632822 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04362A_S29_L003_R1_001.fastq.gz BS04362A_S29_L003_R2_001.fastq.gz fastq fastq 1463186928.0 17418892.0 GSM4632822 r3 0:28 1:56 A:391051845;C:341095211;G:353736569;T:376988684;N:314619 28 56     391051845 341095211 353736569 376988684 314619 SRX8598391 SRS6888926 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00629 0.95283 0.00126 0.07184 0.98707 0.82142 0.35436 0.49597 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59895 59895 SRR12070812 SRX8598391 SRS6888926 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVitroCoCulturePRO C PRO GSM4632822   tissue:Zebrafish melanoma cell line|cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma InVitroCoCulturePRO C PRO Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma GSM4632822 GSM4632822: InVitroCoCulturePRO C PRO; Danio rerio; RNA Seq GSM4632822   1 none provided by the submitter GEO Accession:GSM4632822 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04363A_S30_L001_R1_001.fastq.gz BS04363A_S30_L001_R2_001.fastq.gz fastq fastq 1530433632.0 18219448.0 GSM4632822 r4 0:28 1:56 A:409421761;C:356783449;G:369293756;T:394446713;N:487953 28 56     409421761 356783449 369293756 394446713 487953 SRX8598391 SRS6888926 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00629 0.95196 0.00127 0.07372 0.98685 0.82118 0.38713 0.50626 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59896 59896 SRR12070813 SRX8598391 SRS6888926 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVitroCoCulturePRO C PRO GSM4632822   tissue:Zebrafish melanoma cell line|cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma InVitroCoCulturePRO C PRO Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma GSM4632822 GSM4632822: InVitroCoCulturePRO C PRO; Danio rerio; RNA Seq GSM4632822   1 none provided by the submitter GEO Accession:GSM4632822 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04363A_S30_L002_R1_001.fastq.gz BS04363A_S30_L002_R2_001.fastq.gz fastq fastq 1487645880.0 17710070.0 GSM4632822 r5 0:28 1:56 A:398049512;C:347141056;G:359315599;T:383125267;N:14446 28 56     398049512 347141056 359315599 383125267 14446 SRX8598391 SRS6888926 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00645 0.9526 0.00139 0.07292 0.98683 0.82306 0.36544 0.49888 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59897 59897 SRR12070814 SRX8598391 SRS6888926 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVitroCoCulturePRO C PRO GSM4632822   tissue:Zebrafish melanoma cell line|cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma InVitroCoCulturePRO C PRO Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma GSM4632822 GSM4632822: InVitroCoCulturePRO C PRO; Danio rerio; RNA Seq GSM4632822   1 none provided by the submitter GEO Accession:GSM4632822 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04363A_S30_L003_R1_001.fastq.gz BS04363A_S30_L003_R2_001.fastq.gz fastq fastq 1419765816.0 16901974.0 GSM4632822 r6 0:28 1:56 A:379570290;C:331081061;G:342937072;T:365872250;N:305143 28 56     379570290 331081061 342937072 365872250 305143 SRX8598391 SRS6888926 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00639 0.95258 0.00131 0.07211 0.98656 0.82215 0.36183 0.50028 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59898 59898 SRR12070815 SRX8598391 SRS6888926 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVitroCoCulturePRO C PRO GSM4632822   tissue:Zebrafish melanoma cell line|cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma InVitroCoCulturePRO C PRO Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma GSM4632822 GSM4632822: InVitroCoCulturePRO C PRO; Danio rerio; RNA Seq GSM4632822   1 none provided by the submitter GEO Accession:GSM4632822 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04364A_S31_L001_R1_001.fastq.gz BS04364A_S31_L001_R2_001.fastq.gz fastq fastq 1219258740.0 14514985.0 GSM4632822 r7 0:28 1:56 A:326040885;C:284148488;G:294324187;T:314369331;N:375849 28 56     326040885 284148488 294324187 314369331 375849 SRX8598391 SRS6888926 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00638 0.95299 0.00132 0.07368 0.98703 0.82217 0.39125 0.50058 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59899 59899 SRR12070816 SRX8598391 SRS6888926 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVitroCoCulturePRO C PRO GSM4632822   tissue:Zebrafish melanoma cell line|cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma InVitroCoCulturePRO C PRO Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma GSM4632822 GSM4632822: InVitroCoCulturePRO C PRO; Danio rerio; RNA Seq GSM4632822   1 none provided by the submitter GEO Accession:GSM4632822 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04364A_S31_L002_R1_001.fastq.gz BS04364A_S31_L002_R2_001.fastq.gz fastq fastq 1182878256.0 14081884.0 GSM4632822 r8 0:28 1:56 A:316450660;C:275888706;G:285809088;T:304718502;N:11300 28 56     316450660 275888706 285809088 304718502 11300 SRX8598391 SRS6888926 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00625 0.95248 0.0014 0.07181 0.98713 0.82134 0.37513 0.49645 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59900 59900 SRR12070817 SRX8598391 SRS6888926 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVitroCoCulturePRO C PRO GSM4632822   tissue:Zebrafish melanoma cell line|cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma InVitroCoCulturePRO C PRO Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma GSM4632822 GSM4632822: InVitroCoCulturePRO C PRO; Danio rerio; RNA Seq GSM4632822   1 none provided by the submitter GEO Accession:GSM4632822 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04364A_S31_L003_R1_001.fastq.gz BS04364A_S31_L003_R2_001.fastq.gz fastq fastq 1129913400.0 13451350.0 GSM4632822 r9 0:28 1:56 A:301996525;C:263392969;G:273021225;T:291256999;N:245682 28 56     301996525 263392969 273021225 291256999 245682 SRX8598391 SRS6888926 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00663 0.95254 0.00123 0.07336 0.98608 0.82004 0.35116 0.48635 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59901 59901 SRR12070794 SRX8598390 SRS6888925 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVitroCoCultureINV C INV GSM4632821   tissue:Zebrafish melanoma cell line|cell line:ZMEL INV GFP|cell type:Zebrafish melanoma InVitroCoCultureINV C INV Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL INV GFP|cell type:Zebrafish melanoma GSM4632821 GSM4632821: InVitroCoCultureINV C INV; Danio rerio; RNA Seq GSM4632821   1 none provided by the submitter GEO Accession:GSM4632821 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04358A_S25_L001_R1_001.fastq.gz BS04358A_S25_L001_R2_001.fastq.gz fastq fastq 1524569508.0 18149637.0 GSM4632821 r1 0:28 1:56 A:408872899;C:351795969;G:368934874;T:394493201;N:472565 28 56     408872899 351795969 368934874 394493201 472565 SRX8598390 SRS6888925 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00744 0.94994 0.00129 0.08045 0.98462 0.82319 0.37339 0.51461 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59902 59902 SRR12070795 SRX8598390 SRS6888925 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVitroCoCultureINV C INV GSM4632821   tissue:Zebrafish melanoma cell line|cell line:ZMEL INV GFP|cell type:Zebrafish melanoma InVitroCoCultureINV C INV Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL INV GFP|cell type:Zebrafish melanoma GSM4632821 GSM4632821: InVitroCoCultureINV C INV; Danio rerio; RNA Seq GSM4632821   1 none provided by the submitter GEO Accession:GSM4632821 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04361A_S28_L001_R2_001.fastq.gz BS04361A_S28_L001_R1_001.fastq.gz fastq fastq 1690196760.0 20121390.0 GSM4632821 r10 0:28 1:56 A:454287482;C:390312456;G:407429482;T:437648802;N:518538 28 56     454287482 390312456 407429482 437648802 518538 SRX8598390 SRS6888925 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00704 0.94869 0.00138 0.08006 0.98557 0.81931 0.33489 0.51357 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59903 59903 SRR12070796 SRX8598390 SRS6888925 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVitroCoCultureINV C INV GSM4632821   tissue:Zebrafish melanoma cell line|cell line:ZMEL INV GFP|cell type:Zebrafish melanoma InVitroCoCultureINV C INV Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL INV GFP|cell type:Zebrafish melanoma GSM4632821 GSM4632821: InVitroCoCultureINV C INV; Danio rerio; RNA Seq GSM4632821   1 none provided by the submitter GEO Accession:GSM4632821 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04361A_S28_L002_R1_001.fastq.gz BS04361A_S28_L002_R2_001.fastq.gz fastq fastq 1795932264.0 21380146.0 GSM4632821 r11 0:28 1:56 A:482804698;C:415062383;G:433390959;T:464657330;N:16894 28 56     482804698 415062383 433390959 464657330 16894 SRX8598390 SRS6888925 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00718 0.94935 0.00153 0.08163 0.98593 0.81826 0.38619 0.52157 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59904 59904 SRR12070797 SRX8598390 SRS6888925 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVitroCoCultureINV C INV GSM4632821   tissue:Zebrafish melanoma cell line|cell line:ZMEL INV GFP|cell type:Zebrafish melanoma InVitroCoCultureINV C INV Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL INV GFP|cell type:Zebrafish melanoma GSM4632821 GSM4632821: InVitroCoCultureINV C INV; Danio rerio; RNA Seq GSM4632821   1 none provided by the submitter GEO Accession:GSM4632821 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04361A_S28_L003_R1_001.fastq.gz BS04361A_S28_L003_R2_001.fastq.gz fastq fastq 1892563848.0 22530522.0 GSM4632821 r12 0:28 1:56 A:508280818;C:437173444;G:456747533;T:489955912;N:406141 28 56     508280818 437173444 456747533 489955912 406141 SRX8598390 SRS6888925 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00714 0.94822 0.00147 0.08202 0.98604 0.81813 0.37383 0.52358 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59905 59905 SRR12070798 SRX8598390 SRS6888925 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVitroCoCultureINV C INV GSM4632821   tissue:Zebrafish melanoma cell line|cell line:ZMEL INV GFP|cell type:Zebrafish melanoma InVitroCoCultureINV C INV Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL INV GFP|cell type:Zebrafish melanoma GSM4632821 GSM4632821: InVitroCoCultureINV C INV; Danio rerio; RNA Seq GSM4632821   1 none provided by the submitter GEO Accession:GSM4632821 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04358A_S25_L002_R1_001.fastq.gz BS04358A_S25_L002_R2_001.fastq.gz fastq fastq 1620727500.0 19294375.0 GSM4632821 r2 0:28 1:56 A:434872284;C:374329924;G:392494566;T:419015123;N:15603 28 56     434872284 374329924 392494566 419015123 15603 SRX8598390 SRS6888925 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00725 0.94994 0.00147 0.08019 0.98526 0.82235 0.36098 0.50775 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59906 59906 SRR12070799 SRX8598390 SRS6888925 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVitroCoCultureINV C INV GSM4632821   tissue:Zebrafish melanoma cell line|cell line:ZMEL INV GFP|cell type:Zebrafish melanoma InVitroCoCultureINV C INV Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL INV GFP|cell type:Zebrafish melanoma GSM4632821 GSM4632821: InVitroCoCultureINV C INV; Danio rerio; RNA Seq GSM4632821   1 none provided by the submitter GEO Accession:GSM4632821 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04358A_S25_L003_R1_001.fastq.gz BS04358A_S25_L003_R2_001.fastq.gz fastq fastq 1707889176.0 20332014.0 GSM4632821 r3 0:28 1:56 A:457493127;C:394310250;G:414010722;T:441707569;N:367508 28 56     457493127 394310250 414010722 441707569 367508 SRX8598390 SRS6888925 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00739 0.94805 0.00142 0.08043 0.98476 0.82355 0.36507 0.51796 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59907 59907 SRR12070800 SRX8598390 SRS6888925 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVitroCoCultureINV C INV GSM4632821   tissue:Zebrafish melanoma cell line|cell line:ZMEL INV GFP|cell type:Zebrafish melanoma InVitroCoCultureINV C INV Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL INV GFP|cell type:Zebrafish melanoma GSM4632821 GSM4632821: InVitroCoCultureINV C INV; Danio rerio; RNA Seq GSM4632821   1 none provided by the submitter GEO Accession:GSM4632821 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04359A_S26_L001_R1_001.fastq.gz BS04359A_S26_L001_R2_001.fastq.gz fastq fastq 621574044.0 7399691.0 GSM4632821 r4 0:28 1:56 A:166982801;C:143376447;G:149992097;T:161032566;N:190133 28 56     166982801 143376447 149992097 161032566 190133 SRX8598390 SRS6888925 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.0076 0.94817 0.00144 0.08179 0.98395 0.81826 0.37372 0.52016 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59908 59908 SRR12070801 SRX8598390 SRS6888925 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVitroCoCultureINV C INV GSM4632821   tissue:Zebrafish melanoma cell line|cell line:ZMEL INV GFP|cell type:Zebrafish melanoma InVitroCoCultureINV C INV Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL INV GFP|cell type:Zebrafish melanoma GSM4632821 GSM4632821: InVitroCoCultureINV C INV; Danio rerio; RNA Seq GSM4632821   1 none provided by the submitter GEO Accession:GSM4632821 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04359A_S26_L002_R1_001.fastq.gz BS04359A_S26_L002_R2_001.fastq.gz fastq fastq 662213496.0 7883494.0 GSM4632821 r5 0:28 1:56 A:177919580;C:152869460;G:160002591;T:171415507;N:6358 28 56     177919580 152869460 160002591 171415507 6358 SRX8598390 SRS6888925 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00778 0.9485 0.00143 0.08078 0.98397 0.81738 0.3502 0.52197 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59909 59909 SRR12070802 SRX8598390 SRS6888925 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVitroCoCultureINV C INV GSM4632821   tissue:Zebrafish melanoma cell line|cell line:ZMEL INV GFP|cell type:Zebrafish melanoma InVitroCoCultureINV C INV Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL INV GFP|cell type:Zebrafish melanoma GSM4632821 GSM4632821: InVitroCoCultureINV C INV; Danio rerio; RNA Seq GSM4632821   1 none provided by the submitter GEO Accession:GSM4632821 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04359A_S26_L003_R1_001.fastq.gz BS04359A_S26_L003_R2_001.fastq.gz fastq fastq 697259724.0 8300711.0 GSM4632821 r6 0:28 1:56 A:187156912;C:160903609;G:168487260;T:180561890;N:150053 28 56     187156912 160903609 168487260 180561890 150053 SRX8598390 SRS6888925 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00766 0.94826 0.00146 0.08162 0.98376 0.8182 0.35423 0.50979 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59910 59910 SRR12070803 SRX8598390 SRS6888925 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVitroCoCultureINV C INV GSM4632821   tissue:Zebrafish melanoma cell line|cell line:ZMEL INV GFP|cell type:Zebrafish melanoma InVitroCoCultureINV C INV Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL INV GFP|cell type:Zebrafish melanoma GSM4632821 GSM4632821: InVitroCoCultureINV C INV; Danio rerio; RNA Seq GSM4632821   1 none provided by the submitter GEO Accession:GSM4632821 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04360A_S27_L001_R2_001.fastq.gz BS04360A_S27_L001_R1_001.fastq.gz fastq fastq 1449515844.0 17256141.0 GSM4632821 r7 0:28 1:56 A:389528657;C:334742369;G:349530306;T:375261829;N:452683 28 56     389528657 334742369 349530306 375261829 452683 SRX8598390 SRS6888925 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00716 0.94811 0.00153 0.07996 0.98557 0.8187 0.3443 0.5102 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59911 59911 SRR12070804 SRX8598390 SRS6888925 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVitroCoCultureINV C INV GSM4632821   tissue:Zebrafish melanoma cell line|cell line:ZMEL INV GFP|cell type:Zebrafish melanoma InVitroCoCultureINV C INV Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL INV GFP|cell type:Zebrafish melanoma GSM4632821 GSM4632821: InVitroCoCultureINV C INV; Danio rerio; RNA Seq GSM4632821   1 none provided by the submitter GEO Accession:GSM4632821 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04360A_S27_L002_R1_001.fastq.gz BS04360A_S27_L002_R2_001.fastq.gz fastq fastq 1538935860.0 18320665.0 GSM4632821 r8 0:28 1:56 A:413673427;C:355685179;G:371456154;T:398106546;N:14554 28 56     413673427 355685179 371456154 398106546 14554 SRX8598390 SRS6888925 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00719 0.94834 0.00137 0.08021 0.9852 0.81897 0.375 0.51941 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59912 59912 SRR12070805 SRX8598390 SRS6888925 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVitroCoCultureINV C INV GSM4632821   tissue:Zebrafish melanoma cell line|cell line:ZMEL INV GFP|cell type:Zebrafish melanoma InVitroCoCultureINV C INV Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL INV GFP|cell type:Zebrafish melanoma GSM4632821 GSM4632821: InVitroCoCultureINV C INV; Danio rerio; RNA Seq GSM4632821   1 none provided by the submitter GEO Accession:GSM4632821 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04360A_S27_L003_R1_001.fastq.gz BS04360A_S27_L003_R2_001.fastq.gz fastq fastq 1621177740.0 19299735.0 GSM4632821 r9 0:28 1:56 A:435378400;C:374524726;G:391279336;T:419638571;N:356707 28 56     435378400 374524726 391279336 419638571 356707 SRX8598390 SRS6888925 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00735 0.94865 0.00146 0.08182 0.98508 0.81684 0.36371 0.51483 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59913 59913 SRR12070782 SRX8598389 SRS6888924 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVitroPRO D PRO GSM4632820   tissue:Zebrafish melanoma cell line|cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma InVitroPRO D PRO Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma GSM4632820 GSM4632820: InVitroPRO D PRO; Danio rerio; RNA Seq GSM4632820   1 none provided by the submitter GEO Accession:GSM4632820 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04354A_S21_L001_R2_001.fastq.gz BS04354A_S21_L001_R1_001.fastq.gz fastq fastq 1256812620.0 14962055.0 GSM4632820 r1 0:28 1:56 A:335747323;C:292900864;G:303643109;T:324134543;N:386781 28 56     335747323 292900864 303643109 324134543 386781 SRX8598389 SRS6888924 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00634 0.95385 0.00131 0.06509 0.98709 0.82231 0.39766 0.51478 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59914 59914 SRR12070783 SRX8598389 SRS6888924 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVitroPRO D PRO GSM4632820   tissue:Zebrafish melanoma cell line|cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma InVitroPRO D PRO Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma GSM4632820 GSM4632820: InVitroPRO D PRO; Danio rerio; RNA Seq GSM4632820   1 none provided by the submitter GEO Accession:GSM4632820 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04357A_S24_L001_R1_001.fastq.gz BS04357A_S24_L001_R2_001.fastq.gz fastq fastq 1148675556.0 13674709.0 GSM4632820 r10 0:28 1:56 A:307041391;C:267732764;G:277379931;T:296167955;N:353515 28 56     307041391 267732764 277379931 296167955 353515 SRX8598389 SRS6888924 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00613 0.95338 0.00112 0.06474 0.98697 0.8227 0.3421 0.50778 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59915 59915 SRR12070784 SRX8598389 SRS6888924 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVitroPRO D PRO GSM4632820   tissue:Zebrafish melanoma cell line|cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma InVitroPRO D PRO Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma GSM4632820 GSM4632820: InVitroPRO D PRO; Danio rerio; RNA Seq GSM4632820   1 none provided by the submitter GEO Accession:GSM4632820 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04357A_S24_L002_R1_001.fastq.gz BS04357A_S24_L002_R2_001.fastq.gz fastq fastq 957642420.0 11400505.0 GSM4632820 r11 0:28 1:56 A:256206649;C:223228338;G:231370787;T:246827334;N:9312 28 56     256206649 223228338 231370787 246827334 9312 SRX8598389 SRS6888924 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00587 0.95324 0.00116 0.06501 0.98788 0.82191 0.35083 0.50388 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59916 59916 SRR12070785 SRX8598389 SRS6888924 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVitroPRO D PRO GSM4632820   tissue:Zebrafish melanoma cell line|cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma InVitroPRO D PRO Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma GSM4632820 GSM4632820: InVitroPRO D PRO; Danio rerio; RNA Seq GSM4632820   1 none provided by the submitter GEO Accession:GSM4632820 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04357A_S24_L003_R1_001.fastq.gz BS04357A_S24_L003_R2_001.fastq.gz fastq fastq 994968912.0 11844868.0 GSM4632820 r12 0:28 1:56 A:265778881;C:232000678;G:240512969;T:256463128;N:213256 28 56     265778881 232000678 240512969 256463128 213256 SRX8598389 SRS6888924 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00592 0.95353 0.00107 0.06498 0.98683 0.82179 0.36511 0.51341 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59917 59917 SRR12070786 SRX8598389 SRS6888924 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVitroPRO D PRO GSM4632820   tissue:Zebrafish melanoma cell line|cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma InVitroPRO D PRO Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma GSM4632820 GSM4632820: InVitroPRO D PRO; Danio rerio; RNA Seq GSM4632820   1 none provided by the submitter GEO Accession:GSM4632820 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04354A_S21_L002_R1_001.fastq.gz BS04354A_S21_L002_R2_001.fastq.gz fastq fastq 1041891648.0 12403472.0 GSM4632820 r2 0:28 1:56 A:278467899;C:242826287;G:251914761;T:268672776;N:9925 28 56     278467899 242826287 251914761 268672776 9925 SRX8598389 SRS6888924 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00575 0.95323 0.00099 0.06608 0.98733 0.82408 0.34917 0.48965 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59918 59918 SRR12070787 SRX8598389 SRS6888924 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVitroPRO D PRO GSM4632820   tissue:Zebrafish melanoma cell line|cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma InVitroPRO D PRO Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma GSM4632820 GSM4632820: InVitroPRO D PRO; Danio rerio; RNA Seq GSM4632820   1 none provided by the submitter GEO Accession:GSM4632820 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04354A_S21_L003_R1_001.fastq.gz BS04354A_S21_L003_R2_001.fastq.gz fastq fastq 1082649792.0 12888688.0 GSM4632820 r3 0:28 1:56 A:289047609;C:252352024;G:261848398;T:279164218;N:237543 28 56     289047609 252352024 261848398 279164218 237543 SRX8598389 SRS6888924 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00599 0.95383 0.00107 0.06488 0.98687 0.82098 0.3738 0.50057 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59919 59919 SRR12070788 SRX8598389 SRS6888924 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVitroPRO D PRO GSM4632820   tissue:Zebrafish melanoma cell line|cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma InVitroPRO D PRO Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma GSM4632820 GSM4632820: InVitroPRO D PRO; Danio rerio; RNA Seq GSM4632820   1 none provided by the submitter GEO Accession:GSM4632820 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04355A_S22_L001_R1_001.fastq.gz BS04355A_S22_L001_R2_001.fastq.gz fastq fastq 1344936684.0 16011151.0 GSM4632820 r4 0:28 1:56 A:359370353;C:313441996;G:324922277;T:346791015;N:411043 28 56     359370353 313441996 324922277 346791015 411043 SRX8598389 SRS6888924 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00563 0.95345 0.001 0.06635 0.9876 0.8239 0.34846 0.51394 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59920 59920 SRR12070789 SRX8598389 SRS6888924 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVitroPRO D PRO GSM4632820   tissue:Zebrafish melanoma cell line|cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma InVitroPRO D PRO Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma GSM4632820 GSM4632820: InVitroPRO D PRO; Danio rerio; RNA Seq GSM4632820   1 none provided by the submitter GEO Accession:GSM4632820 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04355A_S22_L002_R1_001.fastq.gz BS04355A_S22_L002_R2_001.fastq.gz fastq fastq 1116219636.0 13288329.0 GSM4632820 r5 0:28 1:56 A:298439978;C:260165860;G:269822276;T:287780911;N:10611 28 56     298439978 260165860 269822276 287780911 10611 SRX8598389 SRS6888924 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00557 0.95329 0.00099 0.06493 0.98786 0.82296 0.34948 0.50913 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59921 59921 SRR12070790 SRX8598389 SRS6888924 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVitroPRO D PRO GSM4632820   tissue:Zebrafish melanoma cell line|cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma InVitroPRO D PRO Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma GSM4632820 GSM4632820: InVitroPRO D PRO; Danio rerio; RNA Seq GSM4632820   1 none provided by the submitter GEO Accession:GSM4632820 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04355A_S22_L003_R1_001.fastq.gz BS04355A_S22_L003_R2_001.fastq.gz fastq fastq 1160743920.0 13818380.0 GSM4632820 r6 0:28 1:56 A:309970093;C:270593614;G:280697217;T:299232158;N:250838 28 56     309970093 270593614 280697217 299232158 250838 SRX8598389 SRS6888924 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.0058 0.95324 0.00103 0.06452 0.98764 0.82246 0.37111 0.52325 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59922 59922 SRR12070791 SRX8598389 SRS6888924 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVitroPRO D PRO GSM4632820   tissue:Zebrafish melanoma cell line|cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma InVitroPRO D PRO Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma GSM4632820 GSM4632820: InVitroPRO D PRO; Danio rerio; RNA Seq GSM4632820   1 none provided by the submitter GEO Accession:GSM4632820 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04356A_S23_L001_R1_001.fastq.gz BS04356A_S23_L001_R2_001.fastq.gz fastq fastq 1154734560.0 13746840.0 GSM4632820 r7 0:28 1:56 A:308556171;C:269230539;G:278861275;T:297735114;N:351461 28 56     308556171 269230539 278861275 297735114 351461 SRX8598389 SRS6888924 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00598 0.95422 0.00117 0.06511 0.98746 0.82217 0.38992 0.50029 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59923 59923 SRR12070792 SRX8598389 SRS6888924 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVitroPRO D PRO GSM4632820   tissue:Zebrafish melanoma cell line|cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma InVitroPRO D PRO Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma GSM4632820 GSM4632820: InVitroPRO D PRO; Danio rerio; RNA Seq GSM4632820   1 none provided by the submitter GEO Accession:GSM4632820 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04356A_S23_L002_R1_001.fastq.gz BS04356A_S23_L002_R2_001.fastq.gz fastq fastq 958877724.0 11415211.0 GSM4632820 r8 0:28 1:56 A:256447008;C:223575305;G:231691520;T:247154779;N:9112 28 56     256447008 223575305 231691520 247154779 9112 SRX8598389 SRS6888924 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00601 0.95306 0.0011 0.06426 0.98729 0.82296 0.33476 0.49603 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59924 59924 SRR12070793 SRX8598389 SRS6888924 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVitroPRO D PRO GSM4632820   tissue:Zebrafish melanoma cell line|cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma InVitroPRO D PRO Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma GSM4632820 GSM4632820: InVitroPRO D PRO; Danio rerio; RNA Seq GSM4632820   1 none provided by the submitter GEO Accession:GSM4632820 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04356A_S23_L003_R1_001.fastq.gz BS04356A_S23_L003_R2_001.fastq.gz fastq fastq 997137456.0 11870684.0 GSM4632820 r9 0:28 1:56 A:266315696;C:232527481;G:241032207;T:257048258;N:213814 28 56     266315696 232527481 241032207 257048258 213814 SRX8598389 SRS6888924 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00574 0.95316 0.00095 0.06466 0.98737 0.82104 0.36563 0.50938 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59925 59925 SRR12070770 SRX8598388 SRS6888923 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVitroINV D INV GSM4632819   tissue:Zebrafish melanoma cell line|cell line:ZMEL INV GFP|cell type:Zebrafish melanoma InVitroINV D INV Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL INV GFP|cell type:Zebrafish melanoma GSM4632819 GSM4632819: InVitroINV D INV; Danio rerio; RNA Seq GSM4632819   1 none provided by the submitter GEO Accession:GSM4632819 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04350A_S17_L001_R1_001.fastq.gz BS04350A_S17_L001_R2_001.fastq.gz fastq fastq 1383742248.0 16473122.0 GSM4632819 r1 0:28 1:56 A:371667201;C:318242128;G:333375123;T:360029202;N:428594 28 56     371667201 318242128 333375123 360029202 428594 SRX8598388 SRS6888923 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00672 0.95069 0.0013 0.07785 0.98675 0.81876 0.38349 0.50829 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59926 59926 SRR12070771 SRX8598388 SRS6888923 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVitroINV D INV GSM4632819   tissue:Zebrafish melanoma cell line|cell line:ZMEL INV GFP|cell type:Zebrafish melanoma InVitroINV D INV Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL INV GFP|cell type:Zebrafish melanoma GSM4632819 GSM4632819: InVitroINV D INV; Danio rerio; RNA Seq GSM4632819   1 none provided by the submitter GEO Accession:GSM4632819 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04353A_S20_L001_R1_001.fastq.gz BS04353A_S20_L001_R2_001.fastq.gz fastq fastq 1451458176.0 17279264.0 GSM4632819 r10 0:28 1:56 A:389803103;C:333822621;G:349517233;T:377872774;N:442445 28 56     389803103 333822621 349517233 377872774 442445 SRX8598388 SRS6888923 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00693 0.95083 0.00122 0.07875 0.98533 0.81945 0.3919 0.50674 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59927 59927 SRR12070772 SRX8598388 SRS6888923 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVitroINV D INV GSM4632819   tissue:Zebrafish melanoma cell line|cell line:ZMEL INV GFP|cell type:Zebrafish melanoma InVitroINV D INV Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL INV GFP|cell type:Zebrafish melanoma GSM4632819 GSM4632819: InVitroINV D INV; Danio rerio; RNA Seq GSM4632819   1 none provided by the submitter GEO Accession:GSM4632819 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04353A_S20_L002_R1_001.fastq.gz BS04353A_S20_L002_R2_001.fastq.gz fastq fastq 1427640312.0 16995718.0 GSM4632819 r11 0:28 1:56 A:383531956;C:328592043;G:344143391;T:371359317;N:13605 28 56     383531956 328592043 344143391 371359317 13605 SRX8598388 SRS6888923 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00667 0.95197 0.0013 0.07682 0.98632 0.8188 0.40904 0.51027 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59928 59928 SRR12070773 SRX8598388 SRS6888923 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVitroINV D INV GSM4632819   tissue:Zebrafish melanoma cell line|cell line:ZMEL INV GFP|cell type:Zebrafish melanoma InVitroINV D INV Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL INV GFP|cell type:Zebrafish melanoma GSM4632819 GSM4632819: InVitroINV D INV; Danio rerio; RNA Seq GSM4632819   1 none provided by the submitter GEO Accession:GSM4632819 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04353A_S20_L003_R1_001.fastq.gz BS04353A_S20_L003_R2_001.fastq.gz fastq fastq 1401692796.0 16686819.0 GSM4632819 r12 0:28 1:56 A:376224957;C:322460526;G:337913300;T:364796386;N:297627 28 56     376224957 322460526 337913300 364796386 297627 SRX8598388 SRS6888923 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00691 0.95011 0.00144 0.07728 0.98626 0.8184 0.40869 0.50687 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59929 59929 SRR12070774 SRX8598388 SRS6888923 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVitroINV D INV GSM4632819   tissue:Zebrafish melanoma cell line|cell line:ZMEL INV GFP|cell type:Zebrafish melanoma InVitroINV D INV Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL INV GFP|cell type:Zebrafish melanoma GSM4632819 GSM4632819: InVitroINV D INV; Danio rerio; RNA Seq GSM4632819   1 none provided by the submitter GEO Accession:GSM4632819 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04350A_S17_L002_R1_001.fastq.gz BS04350A_S17_L002_R2_001.fastq.gz fastq fastq 1363157628.0 16228067.0 GSM4632819 r2 0:28 1:56 A:366236085;C:313819303;G:328691083;T:354398313;N:12844 28 56     366236085 313819303 328691083 354398313 12844 SRX8598388 SRS6888923 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00704 0.9514 0.00143 0.07749 0.98608 0.81949 0.39134 0.50099 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59930 59930 SRR12070775 SRX8598388 SRS6888923 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVitroINV D INV GSM4632819   tissue:Zebrafish melanoma cell line|cell line:ZMEL INV GFP|cell type:Zebrafish melanoma InVitroINV D INV Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL INV GFP|cell type:Zebrafish melanoma GSM4632819 GSM4632819: InVitroINV D INV; Danio rerio; RNA Seq GSM4632819   1 none provided by the submitter GEO Accession:GSM4632819 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04350A_S17_L003_R1_001.fastq.gz BS04350A_S17_L003_R2_001.fastq.gz fastq fastq 1340033352.0 15952778.0 GSM4632819 r3 0:28 1:56 A:359680921;C:308306305;G:323239582;T:348516416;N:290128 28 56     359680921 308306305 323239582 348516416 290128 SRX8598388 SRS6888923 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00704 0.95149 0.00151 0.07753 0.98648 0.81927 0.39599 0.51098 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59931 59931 SRR12070776 SRX8598388 SRS6888923 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVitroINV D INV GSM4632819   tissue:Zebrafish melanoma cell line|cell line:ZMEL INV GFP|cell type:Zebrafish melanoma InVitroINV D INV Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL INV GFP|cell type:Zebrafish melanoma GSM4632819 GSM4632819: InVitroINV D INV; Danio rerio; RNA Seq GSM4632819   1 none provided by the submitter GEO Accession:GSM4632819 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04351A_S18_L001_R1_001.fastq.gz BS04351A_S18_L001_R2_001.fastq.gz fastq fastq 1248643704.0 14864806.0 GSM4632819 r4 0:28 1:56 A:335320084;C:287224572;G:300701738;T:325005886;N:391424 28 56     335320084 287224572 300701738 325005886 391424 SRX8598388 SRS6888923 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00695 0.95173 0.0015 0.07856 0.98636 0.82 0.40464 0.51463 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59932 59932 SRR12070777 SRX8598388 SRS6888923 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVitroINV D INV GSM4632819   tissue:Zebrafish melanoma cell line|cell line:ZMEL INV GFP|cell type:Zebrafish melanoma InVitroINV D INV Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL INV GFP|cell type:Zebrafish melanoma GSM4632819 GSM4632819: InVitroINV D INV; Danio rerio; RNA Seq GSM4632819   1 none provided by the submitter GEO Accession:GSM4632819 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04351A_S18_L002_R1_001.fastq.gz BS04351A_S18_L002_R2_001.fastq.gz fastq fastq 1231462428.0 14660267.0 GSM4632819 r5 0:28 1:56 A:330850282;C:283524930;G:296869716;T:320205856;N:11644 28 56     330850282 283524930 296869716 320205856 11644 SRX8598388 SRS6888923 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00717 0.9511 0.00144 0.07683 0.98606 0.81769 0.40165 0.51431 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59933 59933 SRR12070778 SRX8598388 SRS6888923 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVitroINV D INV GSM4632819   tissue:Zebrafish melanoma cell line|cell line:ZMEL INV GFP|cell type:Zebrafish melanoma InVitroINV D INV Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL INV GFP|cell type:Zebrafish melanoma GSM4632819 GSM4632819: InVitroINV D INV; Danio rerio; RNA Seq GSM4632819   1 none provided by the submitter GEO Accession:GSM4632819 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04351A_S18_L003_R1_001.fastq.gz BS04351A_S18_L003_R2_001.fastq.gz fastq fastq 1208684904.0 14389106.0 GSM4632819 r6 0:28 1:56 A:324389482;C:278119068;G:291440436;T:314475340;N:260578 28 56     324389482 278119068 291440436 314475340 260578 SRX8598388 SRS6888923 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00695 0.95118 0.00133 0.07732 0.98606 0.81736 0.39491 0.50864 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59934 59934 SRR12070779 SRX8598388 SRS6888923 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVitroINV D INV GSM4632819   tissue:Zebrafish melanoma cell line|cell line:ZMEL INV GFP|cell type:Zebrafish melanoma InVitroINV D INV Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL INV GFP|cell type:Zebrafish melanoma GSM4632819 GSM4632819: InVitroINV D INV; Danio rerio; RNA Seq GSM4632819   1 none provided by the submitter GEO Accession:GSM4632819 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04352A_S19_L001_R1_001.fastq.gz BS04352A_S19_L001_R2_001.fastq.gz fastq fastq 1207258332.0 14372123.0 GSM4632819 r7 0:28 1:56 A:324383737;C:277720633;G:290659950;T:314123927;N:370085 28 56     324383737 277720633 290659950 314123927 370085 SRX8598388 SRS6888923 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00692 0.95048 0.00135 0.0771 0.98622 0.82006 0.40075 0.5034 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59935 59935 SRR12070780 SRX8598388 SRS6888923 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVitroINV D INV GSM4632819   tissue:Zebrafish melanoma cell line|cell line:ZMEL INV GFP|cell type:Zebrafish melanoma InVitroINV D INV Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL INV GFP|cell type:Zebrafish melanoma GSM4632819 GSM4632819: InVitroINV D INV; Danio rerio; RNA Seq GSM4632819   1 none provided by the submitter GEO Accession:GSM4632819 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04352A_S19_L002_R1_001.fastq.gz BS04352A_S19_L002_R2_001.fastq.gz fastq fastq 1190747292.0 14175563.0 GSM4632819 r8 0:28 1:56 A:320138498;C:274128294;G:286932733;T:309536552;N:11215 28 56     320138498 274128294 286932733 309536552 11215 SRX8598388 SRS6888923 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00689 0.95128 0.00129 0.07706 0.98606 0.81945 0.40525 0.50765 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59936 59936 SRR12070781 SRX8598388 SRS6888923 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVitroINV D INV GSM4632819   tissue:Zebrafish melanoma cell line|cell line:ZMEL INV GFP|cell type:Zebrafish melanoma InVitroINV D INV Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL INV GFP|cell type:Zebrafish melanoma GSM4632819 GSM4632819: InVitroINV D INV; Danio rerio; RNA Seq GSM4632819   1 none provided by the submitter GEO Accession:GSM4632819 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04352A_S19_L003_R1_001.fastq.gz BS04352A_S19_L003_R2_001.fastq.gz fastq fastq 1170365028.0 13932917.0 GSM4632819 r9 0:28 1:56 A:314265429;C:269311771;G:282105321;T:304428907;N:253600 28 56     314265429 269311771 282105321 304428907 253600 SRX8598388 SRS6888923 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00695 0.95127 0.00145 0.07825 0.98583 0.81893 0.37788 0.50569 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59937 59937 SRR12070758 SRX8598387 SRS6888922 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVivoMetPRO M PRO GSM4632818   tissue:Zebrafish melanoma cell line|cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma InVivoMetPRO M PRO Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma GSM4632818 GSM4632818: InVivoMetPRO M PRO; Danio rerio; RNA Seq GSM4632818   1 none provided by the submitter GEO Accession:GSM4632818 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04346A_S13_L001_R1_001.fastq.gz BS04346A_S13_L001_R2_001.fastq.gz fastq fastq 1458705696.0 17365544.0 GSM4632818 r1 0:28 1:56 A:383365679;C:349805540;G:361240761;T:363849333;N:444383 28 56     383365679 349805540 361240761 363849333 444383 SRX8598387 SRS6888922 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00809 0.94963 0.00209 0.08412 0.98877 0.84118 0.3471 0.5023 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59938 59938 SRR12070759 SRX8598387 SRS6888922 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVivoMetPRO M PRO GSM4632818   tissue:Zebrafish melanoma cell line|cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma InVivoMetPRO M PRO Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma GSM4632818 GSM4632818: InVivoMetPRO M PRO; Danio rerio; RNA Seq GSM4632818   1 none provided by the submitter GEO Accession:GSM4632818 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04349A_S16_L001_R1_001.fastq.gz BS04349A_S16_L001_R2_001.fastq.gz fastq fastq 1326508428.0 15791767.0 GSM4632818 r10 0:28 1:56 A:348519453;C:318084588;G:328712685;T:330789330;N:402372 28 56     348519453 318084588 328712685 330789330 402372 SRX8598387 SRS6888922 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00865 0.94936 0.00221 0.08463 0.98875 0.84269 0.33852 0.52081 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59939 59939 SRR12070760 SRX8598387 SRS6888922 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVivoMetPRO M PRO GSM4632818   tissue:Zebrafish melanoma cell line|cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma InVivoMetPRO M PRO Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma GSM4632818 GSM4632818: InVivoMetPRO M PRO; Danio rerio; RNA Seq GSM4632818   1 none provided by the submitter GEO Accession:GSM4632818 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04349A_S16_L002_R1_001.fastq.gz BS04349A_S16_L002_R2_001.fastq.gz fastq fastq 1376950512.0 16392268.0 GSM4632818 r11 0:28 1:56 A:361862026;C:330399993;G:341452557;T:343223189;N:12747 28 56     361862026 330399993 341452557 343223189 12747 SRX8598387 SRS6888922 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00851 0.95035 0.00236 0.08362 0.98967 0.84331 0.35269 0.52127 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59940 59940 SRR12070761 SRX8598387 SRS6888922 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVivoMetPRO M PRO GSM4632818   tissue:Zebrafish melanoma cell line|cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma InVivoMetPRO M PRO Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma GSM4632818 GSM4632818: InVivoMetPRO M PRO; Danio rerio; RNA Seq GSM4632818   1 none provided by the submitter GEO Accession:GSM4632818 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04349A_S16_L003_R1_001.fastq.gz BS04349A_S16_L003_R2_001.fastq.gz fastq fastq 1385353872.0 16492308.0 GSM4632818 r12 0:28 1:56 A:363751199;C:332233814;G:343582919;T:345492581;N:293359 28 56     363751199 332233814 343582919 345492581 293359 SRX8598387 SRS6888922 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00879 0.9488 0.00236 0.08284 0.98877 0.84064 0.34479 0.51296 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59941 59941 SRR12070762 SRX8598387 SRS6888922 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVivoMetPRO M PRO GSM4632818   tissue:Zebrafish melanoma cell line|cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma InVivoMetPRO M PRO Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma GSM4632818 GSM4632818: InVivoMetPRO M PRO; Danio rerio; RNA Seq GSM4632818   1 none provided by the submitter GEO Accession:GSM4632818 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04346A_S13_L002_R1_001.fastq.gz BS04346A_S13_L002_R2_001.fastq.gz fastq fastq 1512039312.0 18000468.0 GSM4632818 r2 0:28 1:56 A:397403239;C:362809414;G:374830898;T:376981132;N:14629 28 56     397403239 362809414 374830898 376981132 14629 SRX8598387 SRS6888922 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00875 0.9491 0.00267 0.08388 0.98902 0.84187 0.35151 0.52115 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59942 59942 SRR12070763 SRX8598387 SRS6888922 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVivoMetPRO M PRO GSM4632818   tissue:Zebrafish melanoma cell line|cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma InVivoMetPRO M PRO Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma GSM4632818 GSM4632818: InVivoMetPRO M PRO; Danio rerio; RNA Seq GSM4632818   1 none provided by the submitter GEO Accession:GSM4632818 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04346A_S13_L003_R1_001.fastq.gz BS04346A_S13_L003_R2_001.fastq.gz fastq fastq 1524782028.0 18152167.0 GSM4632818 r3 0:28 1:56 A:400510326;C:365687251;G:377953949;T:380302796;N:327706 28 56     400510326 365687251 377953949 380302796 327706 SRX8598387 SRS6888922 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00845 0.95001 0.00236 0.0836 0.98934 0.84058 0.34081 0.51081 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59943 59943 SRR12070764 SRX8598387 SRS6888922 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVivoMetPRO M PRO GSM4632818   tissue:Zebrafish melanoma cell line|cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma InVivoMetPRO M PRO Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma GSM4632818 GSM4632818: InVivoMetPRO M PRO; Danio rerio; RNA Seq GSM4632818   1 none provided by the submitter GEO Accession:GSM4632818 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04347A_S14_L001_R1_001.fastq.gz BS04347A_S14_L001_R2_001.fastq.gz fastq fastq 1439001480.0 17130970.0 GSM4632818 r4 0:28 1:56 A:377937587;C:344932949;G:356806920;T:358882638;N:441386 28 56     377937587 344932949 356806920 358882638 441386 SRX8598387 SRS6888922 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00858 0.94865 0.00241 0.08439 0.9889 0.84277 0.3376 0.51764 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59944 59944 SRR12070765 SRX8598387 SRS6888922 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVivoMetPRO M PRO GSM4632818   tissue:Zebrafish melanoma cell line|cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma InVivoMetPRO M PRO Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma GSM4632818 GSM4632818: InVivoMetPRO M PRO; Danio rerio; RNA Seq GSM4632818   1 none provided by the submitter GEO Accession:GSM4632818 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04347A_S14_L002_R1_001.fastq.gz BS04347A_S14_L002_R2_001.fastq.gz fastq fastq 1492546440.0 17768410.0 GSM4632818 r5 0:28 1:56 A:392057883;C:357969348;G:370453968;T:372050645;N:14596 28 56     392057883 357969348 370453968 372050645 14596 SRX8598387 SRS6888922 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.0083 0.94946 0.00245 0.08477 0.98959 0.84155 0.36021 0.52354 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59945 59945 SRR12070766 SRX8598387 SRS6888922 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVivoMetPRO M PRO GSM4632818   tissue:Zebrafish melanoma cell line|cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma InVivoMetPRO M PRO Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma GSM4632818 GSM4632818: InVivoMetPRO M PRO; Danio rerio; RNA Seq GSM4632818   1 none provided by the submitter GEO Accession:GSM4632818 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04347A_S14_L003_R1_001.fastq.gz BS04347A_S14_L003_R2_001.fastq.gz fastq fastq 1509151560.0 17966090.0 GSM4632818 r6 0:28 1:56 A:396133632;C:361774643;G:374557410;T:376358393;N:327482 28 56     396133632 361774643 374557410 376358393 327482 SRX8598387 SRS6888922 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00856 0.94984 0.00235 0.08497 0.9892 0.84037 0.3415 0.51657 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59946 59946 SRR12070767 SRX8598387 SRS6888922 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVivoMetPRO M PRO GSM4632818   tissue:Zebrafish melanoma cell line|cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma InVivoMetPRO M PRO Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma GSM4632818 GSM4632818: InVivoMetPRO M PRO; Danio rerio; RNA Seq GSM4632818   1 none provided by the submitter GEO Accession:GSM4632818 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04348A_S15_L001_R2_001.fastq.gz BS04348A_S15_L001_R1_001.fastq.gz fastq fastq 1442527464.0 17172946.0 GSM4632818 r7 0:28 1:56 A:378907948;C:345782645;G:357694740;T:359695634;N:446497 28 56     378907948 345782645 357694740 359695634 446497 SRX8598387 SRS6888922 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.0084 0.95004 0.00238 0.08439 0.98906 0.84082 0.35758 0.53144 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59947 59947 SRR12070768 SRX8598387 SRS6888922 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVivoMetPRO M PRO GSM4632818   tissue:Zebrafish melanoma cell line|cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma InVivoMetPRO M PRO Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma GSM4632818 GSM4632818: InVivoMetPRO M PRO; Danio rerio; RNA Seq GSM4632818   1 none provided by the submitter GEO Accession:GSM4632818 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04348A_S15_L002_R1_001.fastq.gz BS04348A_S15_L002_R2_001.fastq.gz fastq fastq 1496781804.0 17818831.0 GSM4632818 r8 0:28 1:56 A:393260898;C:359049930;G:371448817;T:373008443;N:13716 28 56     393260898 359049930 371448817 373008443 13716 SRX8598387 SRS6888922 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.0082 0.95015 0.00243 0.08385 0.9894 0.84242 0.34397 0.49899 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59948 59948 SRR12070769 SRX8598387 SRS6888922 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVivoMetPRO M PRO GSM4632818   tissue:Zebrafish melanoma cell line|cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma InVivoMetPRO M PRO Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma GSM4632818 GSM4632818: InVivoMetPRO M PRO; Danio rerio; RNA Seq GSM4632818   1 none provided by the submitter GEO Accession:GSM4632818 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04348A_S15_L003_R1_001.fastq.gz BS04348A_S15_L003_R2_001.fastq.gz fastq fastq 1510899432.0 17986898.0 GSM4632818 r9 0:28 1:56 A:396624530;C:362183847;G:375029448;T:376742853;N:318754 28 56     396624530 362183847 375029448 376742853 318754 SRX8598387 SRS6888922 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00836 0.94925 0.00235 0.08429 0.98928 0.84122 0.35039 0.52231 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59949 59949 SRR12070746 SRX8598386 SRS6888921 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVivoMetINV M INV GSM4632817   tissue:Zebrafish melanoma cell line|cell line:ZMEL INV GFP|cell type:Zebrafish melanoma InVivoMetINV M INV Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL INV GFP|cell type:Zebrafish melanoma GSM4632817 GSM4632817: InVivoMetINV M INV; Danio rerio; RNA Seq GSM4632817   1 none provided by the submitter GEO Accession:GSM4632817 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04342A_S9_L001_R1_001.fastq.gz BS04342A_S9_L001_R2_001.fastq.gz fastq fastq 1520879304.0 18105706.0 GSM4632817 r1 0:28 1:56 A:402345015;C:356308703;G:369202595;T:392554008;N:468983 28 56     402345015 356308703 369202595 392554008 468983 SRX8598386 SRS6888921 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00778 0.93735 0.00289 0.11482 0.9922 0.8183 0.31675 0.50682 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59950 59950 SRR12070747 SRX8598386 SRS6888921 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVivoMetINV M INV GSM4632817   tissue:Zebrafish melanoma cell line|cell line:ZMEL INV GFP|cell type:Zebrafish melanoma InVivoMetINV M INV Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL INV GFP|cell type:Zebrafish melanoma GSM4632817 GSM4632817: InVivoMetINV M INV; Danio rerio; RNA Seq GSM4632817   1 none provided by the submitter GEO Accession:GSM4632817 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04345A_S12_L001_R1_001.fastq.gz BS04345A_S12_L001_R2_001.fastq.gz fastq fastq 1672849584.0 19914876.0 GSM4632817 r10 0:28 1:56 A:442479833;C:391894003;G:406117249;T:431837196;N:521303 28 56     442479833 391894003 406117249 431837196 521303 SRX8598386 SRS6888921 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00804 0.93945 0.00284 0.1147 0.99125 0.82106 0.3168 0.48531 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59951 59951 SRR12070748 SRX8598386 SRS6888921 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVivoMetINV M INV GSM4632817   tissue:Zebrafish melanoma cell line|cell line:ZMEL INV GFP|cell type:Zebrafish melanoma InVivoMetINV M INV Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL INV GFP|cell type:Zebrafish melanoma GSM4632817 GSM4632817: InVivoMetINV M INV; Danio rerio; RNA Seq GSM4632817   1 none provided by the submitter GEO Accession:GSM4632817 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04345A_S12_L002_R1_001.fastq.gz BS04345A_S12_L002_R2_001.fastq.gz fastq fastq 1803138456.0 21465934.0 GSM4632817 r11 0:28 1:56 A:476934688;C:422845095;G:438246027;T:465095468;N:17178 28 56     476934688 422845095 438246027 465095468 17178 SRX8598386 SRS6888921 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00764 0.93909 0.00268 0.11395 0.99137 0.82102 0.33968 0.5118 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59952 59952 SRR12070749 SRX8598386 SRS6888921 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVivoMetINV M INV GSM4632817   tissue:Zebrafish melanoma cell line|cell line:ZMEL INV GFP|cell type:Zebrafish melanoma InVivoMetINV M INV Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL INV GFP|cell type:Zebrafish melanoma GSM4632817 GSM4632817: InVivoMetINV M INV; Danio rerio; RNA Seq GSM4632817   1 none provided by the submitter GEO Accession:GSM4632817 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04345A_S12_L003_R1_001.fastq.gz BS04345A_S12_L003_R2_001.fastq.gz fastq fastq 1599047268.0 19036277.0 GSM4632817 r12 0:28 1:56 A:422591738;C:374647507;G:388624247;T:412841282;N:342494 28 56     422591738 374647507 388624247 412841282 342494 SRX8598386 SRS6888921 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00792 0.93847 0.00277 0.11563 0.99176 0.82002 0.35096 0.50581 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59953 59953 SRR12070750 SRX8598386 SRS6888921 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVivoMetINV M INV GSM4632817   tissue:Zebrafish melanoma cell line|cell line:ZMEL INV GFP|cell type:Zebrafish melanoma InVivoMetINV M INV Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL INV GFP|cell type:Zebrafish melanoma GSM4632817 GSM4632817: InVivoMetINV M INV; Danio rerio; RNA Seq GSM4632817   1 none provided by the submitter GEO Accession:GSM4632817 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04342A_S9_L002_R1_001.fastq.gz BS04342A_S9_L002_R2_001.fastq.gz fastq fastq 1637408220.0 19492955.0 GSM4632817 r2 0:28 1:56 A:433127114;C:383962557;G:397986381;T:422316484;N:15684 28 56     433127114 383962557 397986381 422316484 15684 SRX8598386 SRS6888921 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00767 0.93867 0.00253 0.11208 0.99111 0.81698 0.32753 0.50509 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59954 59954 SRR12070751 SRX8598386 SRS6888921 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVivoMetINV M INV GSM4632817   tissue:Zebrafish melanoma cell line|cell line:ZMEL INV GFP|cell type:Zebrafish melanoma InVivoMetINV M INV Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL INV GFP|cell type:Zebrafish melanoma GSM4632817 GSM4632817: InVivoMetINV M INV; Danio rerio; RNA Seq GSM4632817   1 none provided by the submitter GEO Accession:GSM4632817 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04342A_S9_L003_R2_001.fastq.gz BS04342A_S9_L003_R1_001.fastq.gz fastq fastq 1454953500.0 17320875.0 GSM4632817 r3 0:28 1:56 A:384630086;C:340966807;G:353544305;T:375497751;N:314551 28 56     384630086 340966807 353544305 375497751 314551 SRX8598386 SRS6888921 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.0077 0.93759 0.00253 0.11302 0.99095 0.81822 0.29674 0.49459 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59955 59955 SRR12070752 SRX8598386 SRS6888921 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVivoMetINV M INV GSM4632817   tissue:Zebrafish melanoma cell line|cell line:ZMEL INV GFP|cell type:Zebrafish melanoma InVivoMetINV M INV Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL INV GFP|cell type:Zebrafish melanoma GSM4632817 GSM4632817: InVivoMetINV M INV; Danio rerio; RNA Seq GSM4632817   1 none provided by the submitter GEO Accession:GSM4632817 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04343A_S10_L001_R1_001.fastq.gz BS04343A_S10_L001_R2_001.fastq.gz fastq fastq 1330683396.0 15841469.0 GSM4632817 r4 0:28 1:56 A:351527254;C:311574797;G:323813225;T:343363405;N:404715 28 56     351527254 311574797 323813225 343363405 404715 SRX8598386 SRS6888921 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00781 0.93894 0.00261 0.1119 0.99078 0.82309 0.31149 0.51425 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59956 59956 SRR12070753 SRX8598386 SRS6888921 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVivoMetINV M INV GSM4632817   tissue:Zebrafish melanoma cell line|cell line:ZMEL INV GFP|cell type:Zebrafish melanoma InVivoMetINV M INV Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL INV GFP|cell type:Zebrafish melanoma GSM4632817 GSM4632817: InVivoMetINV M INV; Danio rerio; RNA Seq GSM4632817   1 none provided by the submitter GEO Accession:GSM4632817 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04343A_S10_L002_R1_001.fastq.gz BS04343A_S10_L002_R2_001.fastq.gz fastq fastq 1434882708.0 17081937.0 GSM4632817 r5 0:28 1:56 A:379181752;C:336282793;G:349499020;T:369905318;N:13825 28 56     379181752 336282793 349499020 369905318 13825 SRX8598386 SRS6888921 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00789 0.93984 0.00271 0.11269 0.99105 0.82256 0.28137 0.49977 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59957 59957 SRR12070754 SRX8598386 SRS6888921 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVivoMetINV M INV GSM4632817   tissue:Zebrafish melanoma cell line|cell line:ZMEL INV GFP|cell type:Zebrafish melanoma InVivoMetINV M INV Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL INV GFP|cell type:Zebrafish melanoma GSM4632817 GSM4632817: InVivoMetINV M INV; Danio rerio; RNA Seq GSM4632817   1 none provided by the submitter GEO Accession:GSM4632817 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04343A_S10_L003_R1_001.fastq.gz BS04343A_S10_L003_R2_001.fastq.gz fastq fastq 1273958532.0 15166173.0 GSM4632817 r6 0:28 1:56 A:336271453;C:298381900;G:310426744;T:328605802;N:272633 28 56     336271453 298381900 310426744 328605802 272633 SRX8598386 SRS6888921 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00749 0.93963 0.00247 0.11162 0.99147 0.82463 0.33193 0.50844 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59958 59958 SRR12070755 SRX8598386 SRS6888921 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVivoMetINV M INV GSM4632817   tissue:Zebrafish melanoma cell line|cell line:ZMEL INV GFP|cell type:Zebrafish melanoma InVivoMetINV M INV Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL INV GFP|cell type:Zebrafish melanoma GSM4632817 GSM4632817: InVivoMetINV M INV; Danio rerio; RNA Seq GSM4632817   1 none provided by the submitter GEO Accession:GSM4632817 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04344A_S11_L001_R2_001.fastq.gz BS04344A_S11_L001_R1_001.fastq.gz fastq fastq 1731535764.0 20613521.0 GSM4632817 r7 0:28 1:56 A:457782608;C:405667922;G:420736879;T:446815219;N:533136 28 56     457782608 405667922 420736879 446815219 533136 SRX8598386 SRS6888921 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00744 0.93716 0.00248 0.11446 0.99109 0.82022 0.33439 0.51744 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59959 59959 SRR12070756 SRX8598386 SRS6888921 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVivoMetINV M INV GSM4632817   tissue:Zebrafish melanoma cell line|cell line:ZMEL INV GFP|cell type:Zebrafish melanoma InVivoMetINV M INV Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL INV GFP|cell type:Zebrafish melanoma GSM4632817 GSM4632817: InVivoMetINV M INV; Danio rerio; RNA Seq GSM4632817   1 none provided by the submitter GEO Accession:GSM4632817 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04344A_S11_L002_R1_001.fastq.gz BS04344A_S11_L002_R2_001.fastq.gz fastq fastq 1867377288.0 22230682.0 GSM4632817 r8 0:28 1:56 A:493763805;C:437884549;G:454178873;T:481532947;N:17114 28 56     493763805 437884549 454178873 481532947 17114 SRX8598386 SRS6888921 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00772 0.9391 0.00269 0.11476 0.99186 0.82073 0.31419 0.50848 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59960 59960 SRR12070757 SRX8598386 SRS6888921 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVivoMetINV M INV GSM4632817   tissue:Zebrafish melanoma cell line|cell line:ZMEL INV GFP|cell type:Zebrafish melanoma InVivoMetINV M INV Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL INV GFP|cell type:Zebrafish melanoma GSM4632817 GSM4632817: InVivoMetINV M INV; Danio rerio; RNA Seq GSM4632817   1 none provided by the submitter GEO Accession:GSM4632817 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04344A_S11_L003_R1_001.fastq.gz BS04344A_S11_L003_R2_001.fastq.gz fastq fastq 1656307800.0 19717950.0 GSM4632817 r9 0:28 1:56 A:437659373;C:388059609;G:402815347;T:427415299;N:358172 28 56     437659373 388059609 402815347 427415299 358172 SRX8598386 SRS6888921 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00789 0.93802 0.00267 0.11398 0.9906 0.82047 0.33804 0.50558 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59961 59961 SRR12070734 SRX8598385 SRS6888920 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVivoPrimaryPRO P PRO GSM4632816   tissue:Zebrafish melanoma cell line|cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma InVivoPrimaryPRO P PRO Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma GSM4632816 GSM4632816: InVivoPrimaryPRO P PRO; Danio rerio; RNA Seq GSM4632816   1 none provided by the submitter GEO Accession:GSM4632816 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04338A_S5_L001_R1_001.fastq.gz BS04338A_S5_L001_R2_001.fastq.gz fastq fastq 1311615732.0 15614473.0 GSM4632816 r1 0:28 1:56 A:347527688;C:309974348;G:318631698;T:335079961;N:402037 28 56     347527688 309974348 318631698 335079961 402037 SRX8598385 SRS6888920 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00763 0.9593 0.00208 0.09378 0.98898 0.83349 0.37416 0.49313 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59962 59962 SRR12070735 SRX8598385 SRS6888920 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVivoPrimaryPRO P PRO GSM4632816   tissue:Zebrafish melanoma cell line|cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma InVivoPrimaryPRO P PRO Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma GSM4632816 GSM4632816: InVivoPrimaryPRO P PRO; Danio rerio; RNA Seq GSM4632816   1 none provided by the submitter GEO Accession:GSM4632816 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04341A_S8_L001_R1_001.fastq.gz BS04341A_S8_L001_R2_001.fastq.gz fastq fastq 1270200708.0 15121437.0 GSM4632816 r10 0:28 1:56 A:336795256;C:300398767;G:308213240;T:324405364;N:388081 28 56     336795256 300398767 308213240 324405364 388081 SRX8598385 SRS6888920 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00751 0.95963 0.00207 0.09447 0.98916 0.8314 0.35762 0.50828 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59963 59963 SRR12070736 SRX8598385 SRS6888920 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVivoPrimaryPRO P PRO GSM4632816   tissue:Zebrafish melanoma cell line|cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma InVivoPrimaryPRO P PRO Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma GSM4632816 GSM4632816: InVivoPrimaryPRO P PRO; Danio rerio; RNA Seq GSM4632816   1 none provided by the submitter GEO Accession:GSM4632816 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04341A_S8_L002_R1_001.fastq.gz BS04341A_S8_L002_R2_001.fastq.gz fastq fastq 1223950224.0 14570836.0 GSM4632816 r11 0:28 1:56 A:324608418;C:289680517;G:297297131;T:312352549;N:11609 28 56     324608418 289680517 297297131 312352549 11609 SRX8598385 SRS6888920 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00708 0.9598 0.002 0.09294 0.99022 0.83213 0.33884 0.50951 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59964 59964 SRR12070737 SRX8598385 SRS6888920 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVivoPrimaryPRO P PRO GSM4632816   tissue:Zebrafish melanoma cell line|cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma InVivoPrimaryPRO P PRO Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma GSM4632816 GSM4632816: InVivoPrimaryPRO P PRO; Danio rerio; RNA Seq GSM4632816   1 none provided by the submitter GEO Accession:GSM4632816 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04341A_S8_L003_R1_001.fastq.gz BS04341A_S8_L003_R2_001.fastq.gz fastq fastq 1323924336.0 15761004.0 GSM4632816 r12 0:28 1:56 A:350797522;C:313234163;G:321554860;T:338054592;N:283199 28 56     350797522 313234163 321554860 338054592 283199 SRX8598385 SRS6888920 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00709 0.96024 0.00195 0.09291 0.98959 0.83017 0.35889 0.49735 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59965 59965 SRR12070738 SRX8598385 SRS6888920 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVivoPrimaryPRO P PRO GSM4632816   tissue:Zebrafish melanoma cell line|cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma InVivoPrimaryPRO P PRO Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma GSM4632816 GSM4632816: InVivoPrimaryPRO P PRO; Danio rerio; RNA Seq GSM4632816   1 none provided by the submitter GEO Accession:GSM4632816 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04338A_S5_L002_R1_001.fastq.gz BS04338A_S5_L002_R2_001.fastq.gz fastq fastq 1264110708.0 15048937.0 GSM4632816 r2 0:28 1:56 A:335066695;C:299007377;G:307338186;T:322686294;N:12156 28 56     335066695 299007377 307338186 322686294 12156 SRX8598385 SRS6888920 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00728 0.95973 0.00208 0.09402 0.98979 0.83445 0.35513 0.50088 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59966 59966 SRR12070739 SRX8598385 SRS6888920 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVivoPrimaryPRO P PRO GSM4632816   tissue:Zebrafish melanoma cell line|cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma InVivoPrimaryPRO P PRO Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma GSM4632816 GSM4632816: InVivoPrimaryPRO P PRO; Danio rerio; RNA Seq GSM4632816   1 none provided by the submitter GEO Accession:GSM4632816 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04338A_S5_L003_R1_001.fastq.gz BS04338A_S5_L003_R2_001.fastq.gz fastq fastq 1366680756.0 16270009.0 GSM4632816 r3 0:28 1:56 A:361843580;C:323086539;G:332361489;T:349096569;N:292579 28 56     361843580 323086539 332361489 349096569 292579 SRX8598385 SRS6888920 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00734 0.95892 0.00218 0.09311 0.98953 0.83289 0.34964 0.50977 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59967 59967 SRR12070740 SRX8598385 SRS6888920 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVivoPrimaryPRO P PRO GSM4632816   tissue:Zebrafish melanoma cell line|cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma InVivoPrimaryPRO P PRO Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma GSM4632816 GSM4632816: InVivoPrimaryPRO P PRO; Danio rerio; RNA Seq GSM4632816   1 none provided by the submitter GEO Accession:GSM4632816 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04339A_S6_L001_R1_001.fastq.gz BS04339A_S6_L001_R2_001.fastq.gz fastq fastq 1352025864.0 16095546.0 GSM4632816 r4 0:28 1:56 A:358402959;C:319694946;G:328088223;T:345424374;N:415362 28 56     358402959 319694946 328088223 345424374 415362 SRX8598385 SRS6888920 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00697 0.95973 0.00205 0.09369 0.99011 0.83021 0.36909 0.50458 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59968 59968 SRR12070741 SRX8598385 SRS6888920 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVivoPrimaryPRO P PRO GSM4632816   tissue:Zebrafish melanoma cell line|cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma InVivoPrimaryPRO P PRO Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma GSM4632816 GSM4632816: InVivoPrimaryPRO P PRO; Danio rerio; RNA Seq GSM4632816   1 none provided by the submitter GEO Accession:GSM4632816 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04339A_S6_L002_R1_001.fastq.gz BS04339A_S6_L002_R2_001.fastq.gz fastq fastq 1304090760.0 15524890.0 GSM4632816 r5 0:28 1:56 A:345766968;C:308548061;G:316769693;T:332994324;N:11714 28 56     345766968 308548061 316769693 332994324 11714 SRX8598385 SRS6888920 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00717 0.95656 0.00217 0.09379 0.99015 0.83169 0.36105 0.51476 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59969 59969 SRR12070742 SRX8598385 SRS6888920 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVivoPrimaryPRO P PRO GSM4632816   tissue:Zebrafish melanoma cell line|cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma InVivoPrimaryPRO P PRO Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma GSM4632816 GSM4632816: InVivoPrimaryPRO P PRO; Danio rerio; RNA Seq GSM4632816   1 none provided by the submitter GEO Accession:GSM4632816 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04339A_S6_L003_R1_001.fastq.gz BS04339A_S6_L003_R2_001.fastq.gz fastq fastq 1406407128.0 16742942.0 GSM4632816 r6 0:28 1:56 A:372572183;C:332639156;G:341683559;T:359207654;N:304576 28 56     372572183 332639156 341683559 359207654 304576 SRX8598385 SRS6888920 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00749 0.95928 0.00212 0.09425 0.98977 0.83055 0.36094 0.48857 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59970 59970 SRR12070743 SRX8598385 SRS6888920 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVivoPrimaryPRO P PRO GSM4632816   tissue:Zebrafish melanoma cell line|cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma InVivoPrimaryPRO P PRO Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma GSM4632816 GSM4632816: InVivoPrimaryPRO P PRO; Danio rerio; RNA Seq GSM4632816   1 none provided by the submitter GEO Accession:GSM4632816 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04340A_S7_L001_R1_001.fastq.gz BS04340A_S7_L001_R2_001.fastq.gz fastq fastq 1188179244.0 14144991.0 GSM4632816 r7 0:28 1:56 A:314940110;C:280828061;G:288608958;T:303432761;N:369354 28 56     314940110 280828061 288608958 303432761 369354 SRX8598385 SRS6888920 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00707 0.95938 0.00201 0.09367 0.99011 0.83291 0.35403 0.49692 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59971 59971 SRR12070744 SRX8598385 SRS6888920 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVivoPrimaryPRO P PRO GSM4632816   tissue:Zebrafish melanoma cell line|cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma InVivoPrimaryPRO P PRO Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma GSM4632816 GSM4632816: InVivoPrimaryPRO P PRO; Danio rerio; RNA Seq GSM4632816   1 none provided by the submitter GEO Accession:GSM4632816 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04340A_S7_L002_R1_001.fastq.gz BS04340A_S7_L002_R2_001.fastq.gz fastq fastq 1147566504.0 13661506.0 GSM4632816 r8 0:28 1:56 A:304311650;C:271427834;G:278942780;T:292873193;N:11047 28 56     304311650 271427834 278942780 292873193 11047 SRX8598385 SRS6888920 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00704 0.95991 0.00205 0.09331 0.98961 0.83224 0.36067 0.4913 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59972 59972 SRR12070745 SRX8598385 SRS6888920 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVivoPrimaryPRO P PRO GSM4632816   tissue:Zebrafish melanoma cell line|cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma InVivoPrimaryPRO P PRO Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL PRO TdTomato|cell type:Zebrafish melanoma GSM4632816 GSM4632816: InVivoPrimaryPRO P PRO; Danio rerio; RNA Seq GSM4632816   1 none provided by the submitter GEO Accession:GSM4632816 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04340A_S7_L003_R1_001.fastq.gz BS04340A_S7_L003_R2_001.fastq.gz fastq fastq 1241074716.0 14774699.0 GSM4632816 r9 0:28 1:56 A:328745456;C:293441665;G:301717606;T:316896776;N:273213 28 56     328745456 293441665 301717606 316896776 273213 SRX8598385 SRS6888920 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00738 0.95893 0.00217 0.0938 0.98963 0.83366 0.37411 0.51458 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59973 59973 SRR12070722 SRX8598384 SRS6888919 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVivoPrimaryINV P INV GSM4632815   tissue:Zebrafish melanoma cell line|cell line:ZMEL INV GFP|cell type:Zebrafish melanoma InVivoPrimaryINV P INV Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL INV GFP|cell type:Zebrafish melanoma GSM4632815 GSM4632815: InVivoPrimaryINV P INV; Danio rerio; RNA Seq GSM4632815   1 none provided by the submitter GEO Accession:GSM4632815 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04334A_S1_L001_R1_001.fastq.gz BS04334A_S1_L001_R2_001.fastq.gz fastq fastq 1400490924.0 16672511.0 GSM4632815 r1 0:28 1:56 A:370795902;C:327161529;G:339773205;T:362324702;N:435586 28 56     370795902 327161529 339773205 362324702 435586 SRX8598384 SRS6888919 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00787 0.95084 0.00277 0.1197 0.9904 0.81889 0.33333 0.49641 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59974 59974 SRR12070723 SRX8598384 SRS6888919 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVivoPrimaryINV P INV GSM4632815   tissue:Zebrafish melanoma cell line|cell line:ZMEL INV GFP|cell type:Zebrafish melanoma InVivoPrimaryINV P INV Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL INV GFP|cell type:Zebrafish melanoma GSM4632815 GSM4632815: InVivoPrimaryINV P INV; Danio rerio; RNA Seq GSM4632815   1 none provided by the submitter GEO Accession:GSM4632815 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04337A_S4_L001_R1_001.fastq.gz BS04337A_S4_L001_R2_001.fastq.gz fastq fastq 1210463352.0 14410278.0 GSM4632815 r10 0:28 1:56 A:320796223;C:282744567;G:293319961;T:313229529;N:373072 28 56     320796223 282744567 293319961 313229529 373072 SRX8598384 SRS6888919 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.0078 0.95544 0.00272 0.11916 0.99044 0.82069 0.32851 0.493 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59975 59975 SRR12070724 SRX8598384 SRS6888919 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVivoPrimaryINV P INV GSM4632815   tissue:Zebrafish melanoma cell line|cell line:ZMEL INV GFP|cell type:Zebrafish melanoma InVivoPrimaryINV P INV Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL INV GFP|cell type:Zebrafish melanoma GSM4632815 GSM4632815: InVivoPrimaryINV P INV; Danio rerio; RNA Seq GSM4632815   1 none provided by the submitter GEO Accession:GSM4632815 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04337A_S4_L002_R1_001.fastq.gz BS04337A_S4_L002_R2_001.fastq.gz fastq fastq 1338772176.0 15937764.0 GSM4632815 r11 0:28 1:56 A:354800086;C:313048225;G:324772317;T:346138940;N:12608 28 56     354800086 313048225 324772317 346138940 12608 SRX8598384 SRS6888919 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00803 0.95217 0.00257 0.11937 0.98987 0.81842 0.32183 0.49682 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59976 59976 SRR12070725 SRX8598384 SRS6888919 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVivoPrimaryINV P INV GSM4632815   tissue:Zebrafish melanoma cell line|cell line:ZMEL INV GFP|cell type:Zebrafish melanoma InVivoPrimaryINV P INV Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL INV GFP|cell type:Zebrafish melanoma GSM4632815 GSM4632815: InVivoPrimaryINV P INV; Danio rerio; RNA Seq GSM4632815   1 none provided by the submitter GEO Accession:GSM4632815 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04337A_S4_L003_R1_001.fastq.gz BS04337A_S4_L003_R2_001.fastq.gz fastq fastq 1317319584.0 15682376.0 GSM4632815 r12 0:28 1:56 A:348818109;C:307862457;G:319580031;T:340778334;N:280653 28 56     348818109 307862457 319580031 340778334 280653 SRX8598384 SRS6888919 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00807 0.94993 0.00281 0.11973 0.99022 0.81893 0.32167 0.4902 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59977 59977 SRR12070726 SRX8598384 SRS6888919 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVivoPrimaryINV P INV GSM4632815   tissue:Zebrafish melanoma cell line|cell line:ZMEL INV GFP|cell type:Zebrafish melanoma InVivoPrimaryINV P INV Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL INV GFP|cell type:Zebrafish melanoma GSM4632815 GSM4632815: InVivoPrimaryINV P INV; Danio rerio; RNA Seq GSM4632815   1 none provided by the submitter GEO Accession:GSM4632815 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04334A_S1_L002_R1_001.fastq.gz BS04334A_S1_L002_R2_001.fastq.gz fastq fastq 1546148520.0 18406530.0 GSM4632815 r2 0:28 1:56 A:409479170;C:361530673;G:375471276;T:399652828;N:14573 28 56     409479170 361530673 375471276 399652828 14573 SRX8598384 SRS6888919 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00794 0.95104 0.00291 0.11944 0.99074 0.81789 0.31656 0.47492 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59978 59978 SRR12070727 SRX8598384 SRS6888919 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVivoPrimaryINV P INV GSM4632815   tissue:Zebrafish melanoma cell line|cell line:ZMEL INV GFP|cell type:Zebrafish melanoma InVivoPrimaryINV P INV Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL INV GFP|cell type:Zebrafish melanoma GSM4632815 GSM4632815: InVivoPrimaryINV P INV; Danio rerio; RNA Seq GSM4632815   1 none provided by the submitter GEO Accession:GSM4632815 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04334A_S1_L003_R1_001.fastq.gz BS04334A_S1_L003_R2_001.fastq.gz fastq fastq 1525047552.0 18155328.0 GSM4632815 r3 0:28 1:56 A:403506761;C:356422354;G:370392628;T:394395917;N:329892 28 56     403506761 356422354 370392628 394395917 329892 SRX8598384 SRS6888919 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00792 0.94984 0.00274 0.11839 0.99042 0.81846 0.33841 0.49505 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59979 59979 SRR12070728 SRX8598384 SRS6888919 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVivoPrimaryINV P INV GSM4632815   tissue:Zebrafish melanoma cell line|cell line:ZMEL INV GFP|cell type:Zebrafish melanoma InVivoPrimaryINV P INV Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL INV GFP|cell type:Zebrafish melanoma GSM4632815 GSM4632815: InVivoPrimaryINV P INV; Danio rerio; RNA Seq GSM4632815   1 none provided by the submitter GEO Accession:GSM4632815 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04335A_S2_L001_R1_001.fastq.gz BS04335A_S2_L001_R2_001.fastq.gz fastq fastq 1415856792.0 16855438.0 GSM4632815 r4 0:28 1:56 A:374829638;C:330746758;G:343674111;T:366168570;N:437715 28 56     374829638 330746758 343674111 366168570 437715 SRX8598384 SRS6888919 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00771 0.94973 0.00262 0.1191 0.99032 0.81909 0.29399 0.50598 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59980 59980 SRR12070729 SRX8598384 SRS6888919 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVivoPrimaryINV P INV GSM4632815   tissue:Zebrafish melanoma cell line|cell line:ZMEL INV GFP|cell type:Zebrafish melanoma InVivoPrimaryINV P INV Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL INV GFP|cell type:Zebrafish melanoma GSM4632815 GSM4632815: InVivoPrimaryINV P INV; Danio rerio; RNA Seq GSM4632815   1 none provided by the submitter GEO Accession:GSM4632815 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04335A_S2_L002_R1_001.fastq.gz BS04335A_S2_L002_R2_001.fastq.gz fastq fastq 1566708696.0 18651294.0 GSM4632815 r5 0:28 1:56 A:414884615;C:366309114;G:380613229;T:404886588;N:15150 28 56     414884615 366309114 380613229 404886588 15150 SRX8598384 SRS6888919 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00801 0.95055 0.00274 0.11743 0.99013 0.81862 0.3227 0.48028 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59981 59981 SRR12070730 SRX8598384 SRS6888919 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVivoPrimaryINV P INV GSM4632815   tissue:Zebrafish melanoma cell line|cell line:ZMEL INV GFP|cell type:Zebrafish melanoma InVivoPrimaryINV P INV Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL INV GFP|cell type:Zebrafish melanoma GSM4632815 GSM4632815: InVivoPrimaryINV P INV; Danio rerio; RNA Seq GSM4632815   1 none provided by the submitter GEO Accession:GSM4632815 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04335A_S2_L003_R1_001.fastq.gz BS04335A_S2_L003_R2_001.fastq.gz fastq fastq 1545433596.0 18398019.0 GSM4632815 r6 0:28 1:56 A:408845990;C:361118232;G:375585275;T:399550646;N:333453 28 56     408845990 361118232 375585275 399550646 333453 SRX8598384 SRS6888919 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00755 0.9505 0.00271 0.11954 0.99052 0.81953 0.33586 0.49085 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59982 59982 SRR12070731 SRX8598384 SRS6888919 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVivoPrimaryINV P INV GSM4632815   tissue:Zebrafish melanoma cell line|cell line:ZMEL INV GFP|cell type:Zebrafish melanoma InVivoPrimaryINV P INV Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL INV GFP|cell type:Zebrafish melanoma GSM4632815 GSM4632815: InVivoPrimaryINV P INV; Danio rerio; RNA Seq GSM4632815   1 none provided by the submitter GEO Accession:GSM4632815 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04336A_S3_L001_R1_001.fastq.gz BS04336A_S3_L001_R2_001.fastq.gz fastq fastq 1347360588.0 16040007.0 GSM4632815 r7 0:28 1:56 A:356615271;C:314650478;G:327125472;T:348559328;N:410039 28 56     356615271 314650478 327125472 348559328 410039 SRX8598384 SRS6888919 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00784 0.95096 0.00274 0.11988 0.99068 0.82077 0.31827 0.48835 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59983 59983 SRR12070732 SRX8598384 SRS6888919 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVivoPrimaryINV P INV GSM4632815   tissue:Zebrafish melanoma cell line|cell line:ZMEL INV GFP|cell type:Zebrafish melanoma InVivoPrimaryINV P INV Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL INV GFP|cell type:Zebrafish melanoma GSM4632815 GSM4632815: InVivoPrimaryINV P INV; Danio rerio; RNA Seq GSM4632815   1 none provided by the submitter GEO Accession:GSM4632815 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04336A_S3_L002_R1_001.fastq.gz BS04336A_S3_L002_R2_001.fastq.gz fastq fastq 1492901760.0 17772640.0 GSM4632815 r8 0:28 1:56 A:395238532;C:348983658;G:362818610;T:385847191;N:13769 28 56     395238532 348983658 362818610 385847191 13769 SRX8598384 SRS6888919 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00809 0.95035 0.00306 0.11747 0.99103 0.82059 0.33679 0.49389 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor
59984 59984 SRR12070733 SRX8598384 SRS6888919 SRP268341 PRJNA641144 Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] GSE152998 Transcriptome Analysis We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases parent bioproject:PRJNA636815 pubmed:34529939   InVivoPrimaryINV P INV GSM4632815   tissue:Zebrafish melanoma cell line|cell line:ZMEL INV GFP|cell type:Zebrafish melanoma InVivoPrimaryINV P INV Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv Zebrafish melanoma cell line   none provided by the submitter   cell line:ZMEL INV GFP|cell type:Zebrafish melanoma GSM4632815 GSM4632815: InVivoPrimaryINV P INV; Danio rerio; RNA Seq GSM4632815   1 none provided by the submitter GEO Accession:GSM4632815 RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA NextSeq 500   SRP268341     BS04336A_S3_L003_R1_001.fastq.gz BS04336A_S3_L003_R2_001.fastq.gz fastq fastq 1471487472.0 17517708.0 GSM4632815 r9 0:28 1:56 A:389163670;C:343823839;G:357702896;T:380486964;N:310103 28 56     389163670 343823839 357702896 380486964 310103 SRX8598384 SRS6888919 SRA1089858 GEO Memorial Sloan Kettering Cancer Center 2 0.00773 0.95013 0.00274 0.11963 0.99082 0.81982 0.29162 0.47444 28 56 T B sc-like readlen illumina nextseq unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   United States 2020-06-22 Undetermined Undetermined Cancer or Tumor Cancer or Tumor

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;