metadata: run_metadata: 256 rows where experiment.library_source = "TRANSCRIPTOMIC", experiment.library_strategy = "AMPLICON" and tissue_curation

256 rows where experiment.library_source = "TRANSCRIPTOMIC", experiment.library_strategy = "AMPLICON" and tissue_curation_coarse = "All anatomical structures"

descending

Link	rowid ▼	run.accession	experiment.accession	sample.accession	study.accession	bioproject	study.title	study.alias	study.type	study.abstract	sample.alias	sample.attributes	experiment.title	experiment.alias	experiment.library_name	experiment.design_description	experiment.library_strategy	experiment.library_source	experiment.library_selection	experiment.library_layout	experiment.platform	experiment.instrument_model	experiment.spot_descriptor	experiment.study_ref	run.filename	run.semantic_name	run.total_bases	run.total_spots	run.alias	run.read_lengths	run.base_counts	run.r1_length	run.r2_length	run.Acount	run.Ccount	run.Gcount	run.Tcount	run.Ncount	run.experiment	run.pool_member	submission.accession	submission.srasource	submission.bioprojectsource	seqdetective.n_mates	seqdetective.mapping_rate.mate1	seqdetective.mapping_rate.mate2	seqdetective.nofeature_rate.mate1	seqdetective.nofeature_rate.mate2	seqdetective.sparsity.mate1	seqdetective.sparsity.mate2	seqdetective.pos_strand_rate.mate1	seqdetective.pos_strand_rate.mate2	seqdetective.readlen.mate1	seqdetective.readlen.mate2	seqdetective.judgement.mate1	seqdetective.judgement.mate2	seqdetective.judgement.reason	platform_family	instrument_generation	read_bias	selection_class	prep_kit	sc_or_bulk	tech_class	technology	submission.bioprojectsource.country	earliest_date	devstage_curation	devstage_curation_coarse	tissue_curation	tissue_curation_coarse
40376	40376	SRR3166964	SRX1583817	SRS1295580	SRP070056	PRJNA309588	Analysis of the T cell response in Zebrafish	PRJNA309588	Other	Our understanding of T cell receptor TCR repertoire diversity and response tochallenge is still incomplete. For example TCR clones shared by different individuals withminimal alteration to germline gene sequences public clones are detectable in all vertebrates but their significance is unknown. We exploited the experimental advantages offered by thezebrafish to analyze the complete TCR repertoire and its response to self and foreign antigens.We found that cross reactive public TCRs dominate the T cell response endowing the TCRrepertoire with the ability to cope with diverse antigenic challenges. These features of vertebratepublic TCRs provide a mechanism for the rapid generation of protective T cell immunityallowing a short temporal window for the development of more specific private T cell responses.	TCRA library 28d Calm4	breed:AB\|chain:alpha\|index:26\|sex:male\|time point:28d\|tissue:whole fish\|age:1y\|BioSampleModel:Model organism or animal	TCRa sequencing of zebrafish: whole zebrafish: Sample TCRA library 28d Calm4	116 28d Calm4 alpha	116 28d Calm4 alpha	five prime RACE amplification of TCRa transcript	AMPLICON	TRANSCRIPTOMIC	RACE	PAIRED	ILLUMINA	Illumina HiSeq 2000	<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>300</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>151</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>	SRP070056	read1_116_28d_Calm4_alpha.fq.gz read2_116_28d_Calm4_alpha.fq.gz	fastq fastq	12052440600.0	40174802.0	116 28d Calm4 alpha files	0:150 1:150	A:3274476247;C:2324807837;G:3578878507;T:2848354560;N:25923449	150	150	3274476247	2324807837	3578878507	2848354560	25923449	SRX1583817	SRS1295580	SRA353254	SRA	Bar-Ilan University	2	0.00096	0.22917	0.00017	0.19822	0.99906	0.99762	0.35172	0.6189	150	150	T	B	mate1 technical by mapping diff	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	Israel	2017-02-12	Undetermined	Undetermined	Whole Organism	All anatomical structures
40377	40377	SRR3166963	SRX1583816	SRS1295581	SRP070056	PRJNA309588	Analysis of the T cell response in Zebrafish	PRJNA309588	Other	Our understanding of T cell receptor TCR repertoire diversity and response tochallenge is still incomplete. For example TCR clones shared by different individuals withminimal alteration to germline gene sequences public clones are detectable in all vertebrates but their significance is unknown. We exploited the experimental advantages offered by thezebrafish to analyze the complete TCR repertoire and its response to self and foreign antigens.We found that cross reactive public TCRs dominate the T cell response endowing the TCRrepertoire with the ability to cope with diverse antigenic challenges. These features of vertebratepublic TCRs provide a mechanism for the rapid generation of protective T cell immunityallowing a short temporal window for the development of more specific private T cell responses.	TCRA library 28d Calm2	breed:AB\|chain:alpha\|index:25\|sex:male\|time point:28d\|tissue:whole fish\|age:1y\|BioSampleModel:Model organism or animal	TCRa sequencing of zebrafish: whole zebrafish: Sample TCRA library 28d Calm2	114 28d Calm2 alpha	114 28d Calm2 alpha	five prime RACE amplification of TCRa transcript	AMPLICON	TRANSCRIPTOMIC	RACE	PAIRED	ILLUMINA	Illumina HiSeq 2000	<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>300</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>151</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>	SRP070056	read1_114_28d_Calm2_alpha.fq.gz read2_114_28d_Calm2_alpha.fq.gz	fastq fastq	4957122900.0	16523743.0	114 28d Calm2 alpha files	0:150 1:150	A:1398510544;C:988027281;G:1244120221;T:1316350204;N:10114650	150	150	1398510544	988027281	1244120221	1316350204	10114650	SRX1583816	SRS1295581	SRA353254	SRA	Bar-Ilan University	2	0.00167	0.03332	0.00146	0.028	0.99967	0.99896	0.15789	0.60731	150	150	T	T	mates < 9% mapping rate	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	Israel	2017-02-12	Undetermined	Undetermined	Whole Organism	All anatomical structures
40378	40378	SRR3166962	SRX1583815	SRS1295582	SRP070056	PRJNA309588	Analysis of the T cell response in Zebrafish	PRJNA309588	Other	Our understanding of T cell receptor TCR repertoire diversity and response tochallenge is still incomplete. For example TCR clones shared by different individuals withminimal alteration to germline gene sequences public clones are detectable in all vertebrates but their significance is unknown. We exploited the experimental advantages offered by thezebrafish to analyze the complete TCR repertoire and its response to self and foreign antigens.We found that cross reactive public TCRs dominate the T cell response endowing the TCRrepertoire with the ability to cope with diverse antigenic challenges. These features of vertebratepublic TCRs provide a mechanism for the rapid generation of protective T cell immunityallowing a short temporal window for the development of more specific private T cell responses.	TCRA library 28d KLH6	breed:AB\|chain:alpha\|index:21\|sex:male\|time point:28d\|tissue:whole fish\|age:1y\|BioSampleModel:Model organism or animal	TCRa sequencing of zebrafish: whole zebrafish: Sample TCRA library 28d KLH6	110 28d KLH6 alpha	110 28d KLH6 alpha	five prime RACE amplification of TCRa transcript	AMPLICON	TRANSCRIPTOMIC	RACE	PAIRED	ILLUMINA	Illumina HiSeq 2000	<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>300</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>151</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>	SRP070056	read1_110_28d_KLH6_alpha.fq.gz read2_110_28d_KLH6_alpha.fq.gz	fastq fastq	6270530700.0	20901769.0	110 28d KLH6 alpha files	0:150 1:150	A:1802311183;C:1236560108;G:1561615962;T:1659163742;N:10879705	150	150	1802311183	1236560108	1561615962	1659163742	10879705	SRX1583815	SRS1295582	SRA353254	SRA	Bar-Ilan University	2	0.00179	0.13512	0.00073	0.11592	0.99967	0.99855	0.21568	0.87835	150	150	T	B	mate1 technical by mapping diff	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	Israel	2017-02-12	Undetermined	Undetermined	Whole Organism	All anatomical structures
40379	40379	SRR3166961	SRX1583814	SRS1295583	SRP070056	PRJNA309588	Analysis of the T cell response in Zebrafish	PRJNA309588	Other	Our understanding of T cell receptor TCR repertoire diversity and response tochallenge is still incomplete. For example TCR clones shared by different individuals withminimal alteration to germline gene sequences public clones are detectable in all vertebrates but their significance is unknown. We exploited the experimental advantages offered by thezebrafish to analyze the complete TCR repertoire and its response to self and foreign antigens.We found that cross reactive public TCRs dominate the T cell response endowing the TCRrepertoire with the ability to cope with diverse antigenic challenges. These features of vertebratepublic TCRs provide a mechanism for the rapid generation of protective T cell immunityallowing a short temporal window for the development of more specific private T cell responses.	TCRA library 28d PHA6	breed:AB\|chain:alpha\|index:32\|sex:male\|time point:28d\|tissue:whole fish\|age:1y\|BioSampleModel:Model organism or animal	TCRa sequencing of zebrafish: whole zebrafish: Sample TCRA library 28d PHA6	102 28d PHA6 alpha	102 28d PHA6 alpha	five prime RACE amplification of TCRa transcript	AMPLICON	TRANSCRIPTOMIC	RACE	PAIRED	ILLUMINA	Illumina HiSeq 2000	<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>300</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>151</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>	SRP070056	read1_102_28d_PHA6_alpha.fq.gz read2_102_28d_PHA6_alpha.fq.gz	fastq fastq	10067723700.0	33559079.0	102 28d PHA6 alpha files	0:150 1:150	A:2803515995;C:2027880463;G:2649055724;T:2566963260;N:20308258	150	150	2803515995	2027880463	2649055724	2566963260	20308258	SRX1583814	SRS1295583	SRA353254	SRA	Bar-Ilan University	2	0.00158	0.04576	0.00056	0.03839	0.99922	0.99831	0.3246	0.40078	150	150	T	T	mates < 9% mapping rate	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	Israel	2016-02-14	Undetermined	Undetermined	Whole Organism	All anatomical structures
40380	40380	SRR3166960	SRX1583813	SRS1295584	SRP070056	PRJNA309588	Analysis of the T cell response in Zebrafish	PRJNA309588	Other	Our understanding of T cell receptor TCR repertoire diversity and response tochallenge is still incomplete. For example TCR clones shared by different individuals withminimal alteration to germline gene sequences public clones are detectable in all vertebrates but their significance is unknown. We exploited the experimental advantages offered by thezebrafish to analyze the complete TCR repertoire and its response to self and foreign antigens.We found that cross reactive public TCRs dominate the T cell response endowing the TCRrepertoire with the ability to cope with diverse antigenic challenges. These features of vertebratepublic TCRs provide a mechanism for the rapid generation of protective T cell immunityallowing a short temporal window for the development of more specific private T cell responses.	TCRA library 7d KLH2	breed:AB\|chain:alpha\|index:34\|sex:male\|time point:7d\|tissue:whole fish\|age:1y\|BioSampleModel:Model organism or animal	TCRa sequencing of zebrafish: whole zebrafish: Sample TCRA library 7d KLH2	16 7d KLH2 alpha	16 7d KLH2 alpha	five prime RACE amplification of TCRa transcript	AMPLICON	TRANSCRIPTOMIC	RACE	PAIRED	ILLUMINA	Illumina HiSeq 2000	<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>300</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>151</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>	SRP070056	read1_16_7d_KLH2_alpha.fq.gz read2_16_7d_KLH2_alpha.fq.gz	fastq fastq	2783317500.0	9277725.0	16 7d KLH2 alpha files	0:150 1:150	A:761370556;C:556705024;G:719835894;T:727504605;N:17901421	150	150	761370556	556705024	719835894	727504605	17901421	SRX1583813	SRS1295584	SRA353254	SRA	Bar-Ilan University	2	0.00143	0.13658	0.0008	0.11879	0.99935	0.99876	0.25409	0.87567	150	150	T	B	mate1 technical by mapping diff	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	Israel	2016-02-14	Undetermined	Undetermined	Whole Organism	All anatomical structures
40381	40381	SRR3166959	SRX1583812	SRS1295585	SRP070056	PRJNA309588	Analysis of the T cell response in Zebrafish	PRJNA309588	Other	Our understanding of T cell receptor TCR repertoire diversity and response tochallenge is still incomplete. For example TCR clones shared by different individuals withminimal alteration to germline gene sequences public clones are detectable in all vertebrates but their significance is unknown. We exploited the experimental advantages offered by thezebrafish to analyze the complete TCR repertoire and its response to self and foreign antigens.We found that cross reactive public TCRs dominate the T cell response endowing the TCRrepertoire with the ability to cope with diverse antigenic challenges. These features of vertebratepublic TCRs provide a mechanism for the rapid generation of protective T cell immunityallowing a short temporal window for the development of more specific private T cell responses.	TCRA library 21d KLH6	breed:AB\|chain:alpha\|index:24\|sex:male\|time point:21d\|tissue:whole fish\|age:1y\|BioSampleModel:Model organism or animal	TCRa sequencing of zebrafish: whole zebrafish: Sample TCRA library 21d KLH6	78 21d KLH6 alpha	78 21d KLH6 alpha	five prime RACE amplification of TCRa transcript	AMPLICON	TRANSCRIPTOMIC	RACE	PAIRED	ILLUMINA	Illumina HiSeq 2000	<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>300</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>151</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>	SRP070056	read1_78_21d_KLH6_alpha.fq.gz read2_78_21d_KLH6_alpha.fq.gz	fastq fastq	7720614900.0	25735383.0	78 21d KLH6 alpha files	0:150 1:150	A:2163229607;C:1591913203;G:1963558161;T:1998596363;N:3317566	150	150	2163229607	1591913203	1963558161	1998596363	3317566	SRX1583812	SRS1295585	SRA353254	SRA	Bar-Ilan University	2	0.00105	0.04913	0.00036	0.04186	0.99937	0.99835	0.14393	0.4819	150	150	T	T	mates < 9% mapping rate	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	Israel	2017-02-12	Undetermined	Undetermined	Whole Organism	All anatomical structures
40382	40382	SRR3166958	SRX1583811	SRS1295586	SRP070056	PRJNA309588	Analysis of the T cell response in Zebrafish	PRJNA309588	Other	Our understanding of T cell receptor TCR repertoire diversity and response tochallenge is still incomplete. For example TCR clones shared by different individuals withminimal alteration to germline gene sequences public clones are detectable in all vertebrates but their significance is unknown. We exploited the experimental advantages offered by thezebrafish to analyze the complete TCR repertoire and its response to self and foreign antigens.We found that cross reactive public TCRs dominate the T cell response endowing the TCRrepertoire with the ability to cope with diverse antigenic challenges. These features of vertebratepublic TCRs provide a mechanism for the rapid generation of protective T cell immunityallowing a short temporal window for the development of more specific private T cell responses.	TCRA library 7d Calm6	breed:AB\|chain:alpha\|index:33\|sex:male\|time point:7d\|tissue:whole fish\|age:1y\|BioSampleModel:Model organism or animal	TCRa sequencing of zebrafish: whole zebrafish: Sample TCRA library 7d Calm6	27 7d Calm6 alpha	27 7d Calm6 alpha	five prime RACE amplification of TCRa transcript	AMPLICON	TRANSCRIPTOMIC	RACE	PAIRED	ILLUMINA	Illumina HiSeq 2000	<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>300</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>151</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>	SRP070056	read1_27_7d_Calm6_alpha.fq.gz read2_27_7d_Calm6_alpha.fq.gz	fastq fastq	4337226600.0	14457422.0	27 7d Calm6 alpha files	0:150 1:150	A:1174401516;C:871068073;G:1145864920;T:1118174763;N:27717328	150	150	1174401516	871068073	1145864920	1118174763	27717328	SRX1583811	SRS1295586	SRA353254	SRA	Bar-Ilan University	2	0.002	0.032	0.0007	0.02494	0.99924	0.99912	0.38	0.38606	150	150	T	T	mates < 9% mapping rate	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	Israel	2016-02-14	Undetermined	Undetermined	Whole Organism	All anatomical structures
40383	40383	SRR3166957	SRX1583810	SRS1295587	SRP070056	PRJNA309588	Analysis of the T cell response in Zebrafish	PRJNA309588	Other	Our understanding of T cell receptor TCR repertoire diversity and response tochallenge is still incomplete. For example TCR clones shared by different individuals withminimal alteration to germline gene sequences public clones are detectable in all vertebrates but their significance is unknown. We exploited the experimental advantages offered by thezebrafish to analyze the complete TCR repertoire and its response to self and foreign antigens.We found that cross reactive public TCRs dominate the T cell response endowing the TCRrepertoire with the ability to cope with diverse antigenic challenges. These features of vertebratepublic TCRs provide a mechanism for the rapid generation of protective T cell immunityallowing a short temporal window for the development of more specific private T cell responses.	TCRA library 7d PHA7	breed:AB\|chain:alpha\|index:36\|sex:male\|time point:7d\|tissue:whole fish\|age:1y\|BioSampleModel:Model organism or animal	TCRa sequencing of zebrafish: whole zebrafish: Sample TCRA library 7d PHA7	14 7d PHA7 alpha	14 7d PHA7 alpha	five prime RACE amplification of TCRa transcript	AMPLICON	TRANSCRIPTOMIC	RACE	PAIRED	ILLUMINA	Illumina HiSeq 2000	<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>300</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>151</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>	SRP070056	read1_14_7d_PHA7_alpha.fq.gz read2_14_7d_PHA7_alpha.fq.gz	fastq fastq	3401366100.0	11337887.0	14 7d PHA7 alpha files										SRX1583810	SRS1295587	SRA353254	SRA	Bar-Ilan University	2	0.00357	0.02242	0.00202	0.01952	0.99902	0.99811	0.35016	0.5424	150	150	T	T	mates < 9% mapping rate	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	Israel	2017-02-12	Undetermined	Undetermined	Whole Organism	All anatomical structures
40384	40384	SRR3166956	SRX1583809	SRS1295588	SRP070056	PRJNA309588	Analysis of the T cell response in Zebrafish	PRJNA309588	Other	Our understanding of T cell receptor TCR repertoire diversity and response tochallenge is still incomplete. For example TCR clones shared by different individuals withminimal alteration to germline gene sequences public clones are detectable in all vertebrates but their significance is unknown. We exploited the experimental advantages offered by thezebrafish to analyze the complete TCR repertoire and its response to self and foreign antigens.We found that cross reactive public TCRs dominate the T cell response endowing the TCRrepertoire with the ability to cope with diverse antigenic challenges. These features of vertebratepublic TCRs provide a mechanism for the rapid generation of protective T cell immunityallowing a short temporal window for the development of more specific private T cell responses.	TCRA library 7d PHA3	breed:AB\|chain:alpha\|index:35\|sex:male\|time point:7d\|tissue:whole fish\|age:1y\|BioSampleModel:Model organism or animal	TCRa sequencing of zebrafish: whole zebrafish: Sample TCRA library 7d PHA3	10 7d PHA3 alpha	10 7d PHA3 alpha	five prime RACE amplification of TCRa transcript	AMPLICON	TRANSCRIPTOMIC	RACE	PAIRED	ILLUMINA	Illumina HiSeq 2000	<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>300</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>151</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>	SRP070056	read2_10_7d_PHA3_alpha.fq.gz read1_10_7d_PHA3_alpha.fq.gz	fastq fastq	4293459300.0	14311531.0	10 7d PHA3 alpha files	0:150 1:150	A:1208054755;C:855800391;G:1072212534;T:1129932131;N:27459489	150	150	1208054755	855800391	1072212534	1129932131	27459489	SRX1583809	SRS1295588	SRA353254	SRA	Bar-Ilan University	2	0.00174	0.05155	0.0009	0.0472	0.99937	0.9989	0.2256	0.60714	150	150	T	T	mates < 9% mapping rate	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	Israel	2017-02-12	Undetermined	Undetermined	Whole Organism	All anatomical structures
40385	40385	SRR3166955	SRX1583808	SRS1295589	SRP070056	PRJNA309588	Analysis of the T cell response in Zebrafish	PRJNA309588	Other	Our understanding of T cell receptor TCR repertoire diversity and response tochallenge is still incomplete. For example TCR clones shared by different individuals withminimal alteration to germline gene sequences public clones are detectable in all vertebrates but their significance is unknown. We exploited the experimental advantages offered by thezebrafish to analyze the complete TCR repertoire and its response to self and foreign antigens.We found that cross reactive public TCRs dominate the T cell response endowing the TCRrepertoire with the ability to cope with diverse antigenic challenges. These features of vertebratepublic TCRs provide a mechanism for the rapid generation of protective T cell immunityallowing a short temporal window for the development of more specific private T cell responses.	TCRB library 28d Calm7	breed:AB\|chain:beta\|index:56\|sex:male\|time point:28d\|tissue:whole fish\|age:1y\|BioSampleModel:Model organism or animal	TCRb sequencing of zebrafish: whole zebrafish: Sample TCRB library 28d Calm7	119 28d Calm7 beta	119 28d Calm7 beta	five prime RACE amplification of TCRb transcript	AMPLICON	TRANSCRIPTOMIC	RACE	PAIRED	ILLUMINA	Illumina HiSeq 2000	<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>300</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>151</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>	SRP070056	read1_119_28d_Calm7_beta.fq.gz read2_119_28d_Calm7_beta.fq.gz	fastq fastq	3494941800.0	11649806.0	119 28d Calm7 beta files	0:150 1:150	A:1262121526;C:602497563;G:790544892;T:738346792;N:101431027	150	150	1262121526	602497563	790544892	738346792	101431027	SRX1583808	SRS1295589	SRA353254	SRA	Bar-Ilan University	2	3e-05	0.00179	0.0	7e-05	0.99997	0.99831	0.0	0.42009	150	150	T	T	mates < 9% mapping rate	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	Israel	2017-02-12	Undetermined	Undetermined	Whole Organism	All anatomical structures
40386	40386	SRR3166954	SRX1583807	SRS1295590	SRP070056	PRJNA309588	Analysis of the T cell response in Zebrafish	PRJNA309588	Other	Our understanding of T cell receptor TCR repertoire diversity and response tochallenge is still incomplete. For example TCR clones shared by different individuals withminimal alteration to germline gene sequences public clones are detectable in all vertebrates but their significance is unknown. We exploited the experimental advantages offered by thezebrafish to analyze the complete TCR repertoire and its response to self and foreign antigens.We found that cross reactive public TCRs dominate the T cell response endowing the TCRrepertoire with the ability to cope with diverse antigenic challenges. These features of vertebratepublic TCRs provide a mechanism for the rapid generation of protective T cell immunityallowing a short temporal window for the development of more specific private T cell responses.	TCRB library 28d Calm5	breed:AB\|chain:beta\|index:55\|sex:male\|time point:28d\|tissue:whole fish\|age:1y\|BioSampleModel:Model organism or animal	TCRb sequencing of zebrafish: whole zebrafish: Sample TCRB library 28d Calm5	117 28d Calm5 beta	117 28d Calm5 beta	five prime RACE amplification of TCRb transcript	AMPLICON	TRANSCRIPTOMIC	RACE	PAIRED	ILLUMINA	Illumina HiSeq 2000	<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>300</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>151</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>	SRP070056	read2_117_28d_Calm5_beta.fq.gz read1_117_28d_Calm5_beta.fq.gz	fastq fastq	2950876200.0	9836254.0	117 28d Calm5 beta files	0:150 1:150	A:1025845698;C:505599350;G:688977765;T:634738210;N:95715177	150	150	1025845698	505599350	688977765	634738210	95715177	SRX1583807	SRS1295590	SRA353254	SRA	Bar-Ilan University	2	0.0	0.00023	0.0	0.0	1.0	0.99987		0.07692	150	150	T	T	mates < 9% mapping rate	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	Israel	2016-03-02	Undetermined	Undetermined	Whole Organism	All anatomical structures
40387	40387	SRR3166953	SRX1583806	SRS1295591	SRP070056	PRJNA309588	Analysis of the T cell response in Zebrafish	PRJNA309588	Other	Our understanding of T cell receptor TCR repertoire diversity and response tochallenge is still incomplete. For example TCR clones shared by different individuals withminimal alteration to germline gene sequences public clones are detectable in all vertebrates but their significance is unknown. We exploited the experimental advantages offered by thezebrafish to analyze the complete TCR repertoire and its response to self and foreign antigens.We found that cross reactive public TCRs dominate the T cell response endowing the TCRrepertoire with the ability to cope with diverse antigenic challenges. These features of vertebratepublic TCRs provide a mechanism for the rapid generation of protective T cell immunityallowing a short temporal window for the development of more specific private T cell responses.	TCRB library 28d Calm3	breed:AB\|chain:beta\|index:54\|sex:male\|time point:28d\|tissue:whole fish\|age:1y\|BioSampleModel:Model organism or animal	TCRb sequencing of zebrafish: whole zebrafish: Sample TCRB library 28d Calm3	115 28d Calm3 beta	115 28d Calm3 beta	five prime RACE amplification of TCRb transcript	AMPLICON	TRANSCRIPTOMIC	RACE	PAIRED	ILLUMINA	Illumina HiSeq 2000	<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>300</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>151</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>	SRP070056	read1_115_28d_Calm3_beta.fq.gz read2_115_28d_Calm3_beta.fq.gz	fastq fastq	1913218200.0	6377394.0	115 28d Calm3 beta files	0:150 1:150	A:637646003;C:349779874;G:435732113;T:430619528;N:59440682	150	150	637646003	349779874	435732113	430619528	59440682	SRX1583806	SRS1295591	SRA353254	SRA	Bar-Ilan University	2	0.0	0.02438	0.0	0.00184	1.0	0.99908		0.01511	150	150	T	T	mates < 9% mapping rate	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	Israel	2017-02-12	Undetermined	Undetermined	Whole Organism	All anatomical structures
40388	40388	SRR3166952	SRX1583805	SRS1295592	SRP070056	PRJNA309588	Analysis of the T cell response in Zebrafish	PRJNA309588	Other	Our understanding of T cell receptor TCR repertoire diversity and response tochallenge is still incomplete. For example TCR clones shared by different individuals withminimal alteration to germline gene sequences public clones are detectable in all vertebrates but their significance is unknown. We exploited the experimental advantages offered by thezebrafish to analyze the complete TCR repertoire and its response to self and foreign antigens.We found that cross reactive public TCRs dominate the T cell response endowing the TCRrepertoire with the ability to cope with diverse antigenic challenges. These features of vertebratepublic TCRs provide a mechanism for the rapid generation of protective T cell immunityallowing a short temporal window for the development of more specific private T cell responses.	TCRB library 28d KLH6	breed:AB\|chain:beta\|index:27\|sex:male\|time point:28d\|tissue:whole fish\|age:1y\|BioSampleModel:Model organism or animal	TCRb sequencing of zebrafish: whole zebrafish: Sample TCRB library 28d KLH6	110 28d KLH6 beta	110 28d KLH6 beta	five prime RACE amplification of TCRb transcript	AMPLICON	TRANSCRIPTOMIC	RACE	PAIRED	ILLUMINA	Illumina HiSeq 2000	<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>300</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>151</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>	SRP070056	read1_110_28d_KLH6_beta.fq.gz read2_110_28d_KLH6_beta.fq.gz	fastq fastq	2689206600.0	8964022.0	110 28d KLH6 beta files	0:150 1:150	A:807762783;C:503825062;G:585283183;T:703818890;N:88516682	150	150	807762783	503825062	585283183	703818890	88516682	SRX1583805	SRS1295592	SRA353254	SRA	Bar-Ilan University	2	0.00014	0.3078	0.0	0.02202	0.99975	0.99095	0.38888	0.10297	150	150	T	B	mate1 technical by mapping diff	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	Israel	2017-02-12	Undetermined	Undetermined	Whole Organism	All anatomical structures
40389	40389	SRR3166951	SRX1583804	SRS1295593	SRP070056	PRJNA309588	Analysis of the T cell response in Zebrafish	PRJNA309588	Other	Our understanding of T cell receptor TCR repertoire diversity and response tochallenge is still incomplete. For example TCR clones shared by different individuals withminimal alteration to germline gene sequences public clones are detectable in all vertebrates but their significance is unknown. We exploited the experimental advantages offered by thezebrafish to analyze the complete TCR repertoire and its response to self and foreign antigens.We found that cross reactive public TCRs dominate the T cell response endowing the TCRrepertoire with the ability to cope with diverse antigenic challenges. These features of vertebratepublic TCRs provide a mechanism for the rapid generation of protective T cell immunityallowing a short temporal window for the development of more specific private T cell responses.	TCRB library 28d KLH2	breed:AB\|chain:beta\|index:23\|sex:male\|time point:28d\|tissue:whole fish\|age:1y\|BioSampleModel:Model organism or animal	TCRb sequencing of zebrafish: whole zebrafish: Sample TCRB library 28d KLH2	106 28d KLH2 beta	106 28d KLH2 beta	five prime RACE amplification of TCRb transcript	AMPLICON	TRANSCRIPTOMIC	RACE	PAIRED	ILLUMINA	Illumina HiSeq 2000	<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>300</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>151</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>	SRP070056	read2_106_28d_KLH2_beta.fq.gz read1_106_28d_KLH2_beta.fq.gz	fastq fastq	2795086200.0	9316954.0	106 28d KLH2 beta files	0:150 1:150	A:897420089;C:470460508;G:621809014;T:712999451;N:92397138	150	150	897420089	470460508	621809014	712999451	92397138	SRX1583804	SRS1295593	SRA353254	SRA	Bar-Ilan University	2	0.0	0.05106	0.0	0.00859	1.0	0.99943		0.01388	150	150	T	T	mates < 9% mapping rate	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	Israel	2016-03-02	Undetermined	Undetermined	Whole Organism	All anatomical structures
40390	40390	SRR3166950	SRX1583803	SRS1295594	SRP070056	PRJNA309588	Analysis of the T cell response in Zebrafish	PRJNA309588	Other	Our understanding of T cell receptor TCR repertoire diversity and response tochallenge is still incomplete. For example TCR clones shared by different individuals withminimal alteration to germline gene sequences public clones are detectable in all vertebrates but their significance is unknown. We exploited the experimental advantages offered by thezebrafish to analyze the complete TCR repertoire and its response to self and foreign antigens.We found that cross reactive public TCRs dominate the T cell response endowing the TCRrepertoire with the ability to cope with diverse antigenic challenges. These features of vertebratepublic TCRs provide a mechanism for the rapid generation of protective T cell immunityallowing a short temporal window for the development of more specific private T cell responses.	TCRB library 28d KLH1	breed:AB\|chain:beta\|index:22\|sex:male\|time point:28d\|tissue:whole fish\|age:1y\|BioSampleModel:Model organism or animal	TCRb sequencing of zebrafish: whole zebrafish: Sample TCRB library 28d KLH1	105 28d KLH1 beta	105 28d KLH1 beta	five prime RACE amplification of TCRb transcript	AMPLICON	TRANSCRIPTOMIC	RACE	PAIRED	ILLUMINA	Illumina HiSeq 2000	<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>300</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>151</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>	SRP070056	read1_105_28d_KLH1_beta.fq.gz read2_105_28d_KLH1_beta.fq.gz	fastq fastq	1768628700.0	5895429.0	105 28d KLH1 beta files	0:150 1:150	A:486366963;C:366398128;G:389871583;T:478235213;N:47756813	150	150	486366963	366398128	389871583	478235213	47756813	SRX1583803	SRS1295594	SRA353254	SRA	Bar-Ilan University	2	4e-05	0.09054	3e-05	0.01597	1.0	0.99931		0.00767	150	150	T	B	mate1 technical by mapping diff	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	Israel	2017-02-12	Undetermined	Undetermined	Whole Organism	All anatomical structures
40391	40391	SRR3166949	SRX1583802	SRS1295595	SRP070056	PRJNA309588	Analysis of the T cell response in Zebrafish	PRJNA309588	Other	Our understanding of T cell receptor TCR repertoire diversity and response tochallenge is still incomplete. For example TCR clones shared by different individuals withminimal alteration to germline gene sequences public clones are detectable in all vertebrates but their significance is unknown. We exploited the experimental advantages offered by thezebrafish to analyze the complete TCR repertoire and its response to self and foreign antigens.We found that cross reactive public TCRs dominate the T cell response endowing the TCRrepertoire with the ability to cope with diverse antigenic challenges. These features of vertebratepublic TCRs provide a mechanism for the rapid generation of protective T cell immunityallowing a short temporal window for the development of more specific private T cell responses.	TCRB library 28d PHA7	breed:AB\|chain:beta\|index:30\|sex:male\|time point:28d\|tissue:whole fish\|age:1y\|BioSampleModel:Model organism or animal	TCRb sequencing of zebrafish: whole zebrafish: Sample TCRB library 28d PHA7	103 28d PHA7 beta	103 28d PHA7 beta	five prime RACE amplification of TCRb transcript	AMPLICON	TRANSCRIPTOMIC	RACE	PAIRED	ILLUMINA	Illumina HiSeq 2000	<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>300</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>151</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>	SRP070056	read1_103_28d_PHA7_beta.fq.gz read2_103_28d_PHA7_beta.fq.gz	fastq fastq	2234344500.0	7447815.0	103 28d PHA7 beta files	0:150 1:150	A:628358242;C:462371909;G:526170885;T:548473987;N:68969477	150	150	628358242	462371909	526170885	548473987	68969477	SRX1583802	SRS1295595	SRA353254	SRA	Bar-Ilan University	2	0.00104	0.68691	5e-05	0.01999	0.99894	0.97281	0.23076	0.44172	150	150	T	B	mate1 technical by mapping diff	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	Israel	2016-03-02	Undetermined	Undetermined	Whole Organism	All anatomical structures
40392	40392	SRR3166948	SRX1583801	SRS1295596	SRP070056	PRJNA309588	Analysis of the T cell response in Zebrafish	PRJNA309588	Other	Our understanding of T cell receptor TCR repertoire diversity and response tochallenge is still incomplete. For example TCR clones shared by different individuals withminimal alteration to germline gene sequences public clones are detectable in all vertebrates but their significance is unknown. We exploited the experimental advantages offered by thezebrafish to analyze the complete TCR repertoire and its response to self and foreign antigens.We found that cross reactive public TCRs dominate the T cell response endowing the TCRrepertoire with the ability to cope with diverse antigenic challenges. These features of vertebratepublic TCRs provide a mechanism for the rapid generation of protective T cell immunityallowing a short temporal window for the development of more specific private T cell responses.	TCRB library 28d PHA5	breed:AB\|chain:beta\|index:29\|sex:male\|time point:28d\|tissue:whole fish\|age:1y\|BioSampleModel:Model organism or animal	TCRb sequencing of zebrafish: whole zebrafish: Sample TCRB library 28d PHA5	101 28d PHA5 beta	101 28d PHA5 beta	five prime RACE amplification of TCRb transcript	AMPLICON	TRANSCRIPTOMIC	RACE	PAIRED	ILLUMINA	Illumina HiSeq 2000	<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>300</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>151</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>	SRP070056	read1_101_28d_PHA5_beta.fq.gz read2_101_28d_PHA5_beta.fq.gz	fastq fastq	1356278400.0	4520928.0	101 28d PHA5 beta files	0:150 1:150	A:372190640;C:278464953;G:294268430;T:378226253;N:33128124	150	150	372190640	278464953	294268430	378226253	33128124	SRX1583801	SRS1295596	SRA353254	SRA	Bar-Ilan University	2	0.00254	0.10913	0.0001	0.01715	0.99995	0.99904	0.01106	0.01084	150	150	T	B	mate1 technical by mapping diff	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	Israel	2017-02-12	Undetermined	Undetermined	Whole Organism	All anatomical structures
40393	40393	SRR3166947	SRX1583800	SRS1295597	SRP070056	PRJNA309588	Analysis of the T cell response in Zebrafish	PRJNA309588	Other	Our understanding of T cell receptor TCR repertoire diversity and response tochallenge is still incomplete. For example TCR clones shared by different individuals withminimal alteration to germline gene sequences public clones are detectable in all vertebrates but their significance is unknown. We exploited the experimental advantages offered by thezebrafish to analyze the complete TCR repertoire and its response to self and foreign antigens.We found that cross reactive public TCRs dominate the T cell response endowing the TCRrepertoire with the ability to cope with diverse antigenic challenges. These features of vertebratepublic TCRs provide a mechanism for the rapid generation of protective T cell immunityallowing a short temporal window for the development of more specific private T cell responses.	TCRB library 28d PHA2	breed:AB\|chain:beta\|index:28\|sex:male\|time point:28d\|tissue:whole fish\|age:1y\|BioSampleModel:Model organism or animal	TCRb sequencing of zebrafish: whole zebrafish: Sample TCRB library 28d PHA2	98 28d PHA2 beta	98 28d PHA2 beta	five prime RACE amplification of TCRb transcript	AMPLICON	TRANSCRIPTOMIC	RACE	PAIRED	ILLUMINA	Illumina HiSeq 2000	<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>300</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>151</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>	SRP070056	read2_98_28d_PHA2_beta.fq.gz read1_98_28d_PHA2_beta.fq.gz	fastq fastq	4533755400.0	15112518.0	98 28d PHA2 beta files	0:150 1:150	A:1508096116;C:749853448;G:1051562277;T:1142392486;N:81851073	150	150	1508096116	749853448	1051562277	1142392486	81851073	SRX1583800	SRS1295597	SRA353254	SRA	Bar-Ilan University	2	0.0	0.33493	0.0	0.02388	1.0	0.99758		0.15819	150	150	T	B	mate1 technical by mapping diff	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	Israel	2017-02-12	Undetermined	Undetermined	Whole Organism	All anatomical structures
40394	40394	SRR3166946	SRX1583799	SRS1295598	SRP070056	PRJNA309588	Analysis of the T cell response in Zebrafish	PRJNA309588	Other	Our understanding of T cell receptor TCR repertoire diversity and response tochallenge is still incomplete. For example TCR clones shared by different individuals withminimal alteration to germline gene sequences public clones are detectable in all vertebrates but their significance is unknown. We exploited the experimental advantages offered by thezebrafish to analyze the complete TCR repertoire and its response to self and foreign antigens.We found that cross reactive public TCRs dominate the T cell response endowing the TCRrepertoire with the ability to cope with diverse antigenic challenges. These features of vertebratepublic TCRs provide a mechanism for the rapid generation of protective T cell immunityallowing a short temporal window for the development of more specific private T cell responses.	TCRB library 28d IFA 5	breed:AB\|chain:beta\|index:11\|sex:male\|time point:28d\|tissue:whole fish\|age:1y\|BioSampleModel:Model organism or animal	TCRb sequencing of zebrafish: whole zebrafish: Sample TCRB library 28d IFA 5	93 28d IFA 5 beta	93 28d IFA 5 beta	five prime RACE amplification of TCRb transcript	AMPLICON	TRANSCRIPTOMIC	RACE	PAIRED	ILLUMINA	Illumina HiSeq 2000	<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>300</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>151</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>	SRP070056	read1_93_28d_IFA_5_beta.fq.gz read2_93_28d_IFA_5_beta.fq.gz	fastq fastq	1526394600.0	5087982.0	93 28d IFA 5 beta files	0:150 1:150	A:431910708;C:323148774;G:334806769;T:417586287;N:18942062	150	150	431910708	323148774	334806769	417586287	18942062	SRX1583799	SRS1295598	SRA353254	SRA	Bar-Ilan University	2	0.00039	0.31457	0.00015	0.00771	0.99963	0.98468	0.28947	0.16209	150	150	T	B	mate1 technical by mapping diff	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	Israel	2017-02-12	Undetermined	Undetermined	Whole Organism	All anatomical structures
40395	40395	SRR3166945	SRX1583798	SRS1295599	SRP070056	PRJNA309588	Analysis of the T cell response in Zebrafish	PRJNA309588	Other	Our understanding of T cell receptor TCR repertoire diversity and response tochallenge is still incomplete. For example TCR clones shared by different individuals withminimal alteration to germline gene sequences public clones are detectable in all vertebrates but their significance is unknown. We exploited the experimental advantages offered by thezebrafish to analyze the complete TCR repertoire and its response to self and foreign antigens.We found that cross reactive public TCRs dominate the T cell response endowing the TCRrepertoire with the ability to cope with diverse antigenic challenges. These features of vertebratepublic TCRs provide a mechanism for the rapid generation of protective T cell immunityallowing a short temporal window for the development of more specific private T cell responses.	TCRB library 28d IFA 2	breed:AB\|chain:beta\|index:10\|sex:male\|time point:28d\|tissue:whole fish\|age:1y\|BioSampleModel:Model organism or animal	TCRb sequencing of zebrafish: whole zebrafish: Sample TCRB library 28d IFA 2	90 28d IFA 2 beta	90 28d IFA 2 beta	five prime RACE amplification of TCRb transcript	AMPLICON	TRANSCRIPTOMIC	RACE	PAIRED	ILLUMINA	Illumina HiSeq 2000	<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>300</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>151</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>	SRP070056	read1_90_28d_IFA_2_beta.fq.gz read2_90_28d_IFA_2_beta.fq.gz	fastq fastq	2345298300.0	7817661.0	90 28d IFA 2 beta files	0:150 1:150	A:753823005;C:419081900;G:516233583;T:613533931;N:42625881	150	150	753823005	419081900	516233583	613533931	42625881	SRX1583798	SRS1295599	SRA353254	SRA	Bar-Ilan University	2	0.00015	0.38592	3e-05	0.00508	0.99985	0.99385	0.33333	0.06202	150	150	T	B	mate1 technical by mapping diff	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	Israel	2017-02-12	Undetermined	Undetermined	Whole Organism	All anatomical structures
40396	40396	SRR3166944	SRX1583797	SRS1295600	SRP070056	PRJNA309588	Analysis of the T cell response in Zebrafish	PRJNA309588	Other	Our understanding of T cell receptor TCR repertoire diversity and response tochallenge is still incomplete. For example TCR clones shared by different individuals withminimal alteration to germline gene sequences public clones are detectable in all vertebrates but their significance is unknown. We exploited the experimental advantages offered by thezebrafish to analyze the complete TCR repertoire and its response to self and foreign antigens.We found that cross reactive public TCRs dominate the T cell response endowing the TCRrepertoire with the ability to cope with diverse antigenic challenges. These features of vertebratepublic TCRs provide a mechanism for the rapid generation of protective T cell immunityallowing a short temporal window for the development of more specific private T cell responses.	TCRB library 28d IFA 1	breed:AB\|chain:beta\|index:28\|sex:male\|time point:28d\|tissue:whole fish\|age:1y\|BioSampleModel:Model organism or animal	TCRb sequencing of zebrafish: whole zebrafish: Sample TCRB library 28d IFA 1	89 28d IFA 1 beta	89 28d IFA 1 beta	five prime RACE amplification of TCRb transcript	AMPLICON	TRANSCRIPTOMIC	RACE	PAIRED	ILLUMINA	Illumina HiSeq 2000	<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>300</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>151</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>	SRP070056	read1_89_28d_IFA_1_beta.fq.gz read2_89_28d_IFA_1_beta.fq.gz	fastq fastq	2029349400.0	6764498.0	89 28d IFA 1 beta files	0:150 1:150	A:714287901;C:360307311;G:472841677;T:446872160;N:35040351	150	150	714287901	360307311	472841677	446872160	35040351	SRX1583797	SRS1295600	SRA353254	SRA	Bar-Ilan University	2	0.0	0.06313	0.0	0.01031	1.0	0.99703		0.15591	150	150	T	T	mates < 9% mapping rate	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	Israel	2017-02-12	Undetermined	Undetermined	Whole Organism	All anatomical structures
40397	40397	SRR3166943	SRX1583796	SRS1295601	SRP070056	PRJNA309588	Analysis of the T cell response in Zebrafish	PRJNA309588	Other	Our understanding of T cell receptor TCR repertoire diversity and response tochallenge is still incomplete. For example TCR clones shared by different individuals withminimal alteration to germline gene sequences public clones are detectable in all vertebrates but their significance is unknown. We exploited the experimental advantages offered by thezebrafish to analyze the complete TCR repertoire and its response to self and foreign antigens.We found that cross reactive public TCRs dominate the T cell response endowing the TCRrepertoire with the ability to cope with diverse antigenic challenges. These features of vertebratepublic TCRs provide a mechanism for the rapid generation of protective T cell immunityallowing a short temporal window for the development of more specific private T cell responses.	TCRB library 21d Calm6	breed:AB\|chain:beta\|index:44\|sex:male\|time point:21d\|tissue:whole fish\|age:1y\|BioSampleModel:Model organism or animal	TCRb sequencing of zebrafish: whole zebrafish: Sample TCRB library 21d Calm6	86 21d Calm6 beta	86 21d Calm6 beta	five prime RACE amplification of TCRb transcript	AMPLICON	TRANSCRIPTOMIC	RACE	PAIRED	ILLUMINA	Illumina HiSeq 2000	<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>300</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>151</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>	SRP070056	read2_86_21d_Calm6_beta.fq.gz read1_86_21d_Calm6_beta.fq.gz	fastq fastq	2610499200.0	8701664.0	86 21d Calm6 beta files	0:150 1:150	A:764524163;C:544491001;G:601533912;T:654396223;N:45553901	150	150	764524163	544491001	601533912	654396223	45553901	SRX1583796	SRS1295601	SRA353254	SRA	Bar-Ilan University	2	0.00108	0.63356	0.00012	0.12284	0.99837	0.96193	0.21768	0.38237	150	150	T	B	mate1 technical by mapping diff	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	Israel	2016-03-02	Undetermined	Undetermined	Whole Organism	All anatomical structures
40398	40398	SRR3166942	SRX1583795	SRS1295602	SRP070056	PRJNA309588	Analysis of the T cell response in Zebrafish	PRJNA309588	Other	Our understanding of T cell receptor TCR repertoire diversity and response tochallenge is still incomplete. For example TCR clones shared by different individuals withminimal alteration to germline gene sequences public clones are detectable in all vertebrates but their significance is unknown. We exploited the experimental advantages offered by thezebrafish to analyze the complete TCR repertoire and its response to self and foreign antigens.We found that cross reactive public TCRs dominate the T cell response endowing the TCRrepertoire with the ability to cope with diverse antigenic challenges. These features of vertebratepublic TCRs provide a mechanism for the rapid generation of protective T cell immunityallowing a short temporal window for the development of more specific private T cell responses.	TCRB library 21d Calm5	breed:AB\|chain:beta\|index:43\|sex:male\|time point:21d\|tissue:whole fish\|age:1y\|BioSampleModel:Model organism or animal	TCRb sequencing of zebrafish: whole zebrafish: Sample TCRB library 21d Calm5	85 21d Calm5 beta	85 21d Calm5 beta	five prime RACE amplification of TCRb transcript	AMPLICON	TRANSCRIPTOMIC	RACE	PAIRED	ILLUMINA	Illumina HiSeq 2000	<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>300</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>151</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>	SRP070056	read1_85_21d_Calm5_beta.fq.gz read2_85_21d_Calm5_beta.fq.gz	fastq fastq	2700056100.0	9000187.0	85 21d Calm5 beta files	0:150 1:150	A:755011216;C:593419169;G:623123170;T:688658373;N:39844172	150	150	755011216	593419169	623123170	688658373	39844172	SRX1583795	SRS1295602	SRA353254	SRA	Bar-Ilan University	2	0.00244	0.68155	0.00026	0.01492	0.99766	0.96597	0.24863	0.31823	150	150	T	B	mate1 technical by mapping diff	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	Israel	2017-02-12	Undetermined	Undetermined	Whole Organism	All anatomical structures
40399	40399	SRR3166941	SRX1583794	SRS1295603	SRP070056	PRJNA309588	Analysis of the T cell response in Zebrafish	PRJNA309588	Other	Our understanding of T cell receptor TCR repertoire diversity and response tochallenge is still incomplete. For example TCR clones shared by different individuals withminimal alteration to germline gene sequences public clones are detectable in all vertebrates but their significance is unknown. We exploited the experimental advantages offered by thezebrafish to analyze the complete TCR repertoire and its response to self and foreign antigens.We found that cross reactive public TCRs dominate the T cell response endowing the TCRrepertoire with the ability to cope with diverse antigenic challenges. These features of vertebratepublic TCRs provide a mechanism for the rapid generation of protective T cell immunityallowing a short temporal window for the development of more specific private T cell responses.	TCRB library 21d Calm1	breed:AB\|chain:beta\|index:42\|sex:male\|time point:21d\|tissue:whole fish\|age:1y\|BioSampleModel:Model organism or animal	TCRb sequencing of zebrafish: whole zebrafish: Sample TCRB library 21d Calm1	81 21d Calm1 beta	81 21d Calm1 beta	five prime RACE amplification of TCRb transcript	AMPLICON	TRANSCRIPTOMIC	RACE	PAIRED	ILLUMINA	Illumina HiSeq 2000	<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>300</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>151</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>	SRP070056	read1_81_21d_Calm1_beta.fq.gz read2_81_21d_Calm1_beta.fq.gz	fastq fastq	2296683900.0	7655613.0	81 21d Calm1 beta files	0:150 1:150	A:776751441;C:430253074;G:528909259;T:525320137;N:35449989	150	150	776751441	430253074	528909259	525320137	35449989	SRX1583794	SRS1295603	SRA353254	SRA	Bar-Ilan University	2	2e-05	0.0464	0.0	0.00091	0.99997	0.99882	0.0	0.0134	150	150	T	T	mates < 9% mapping rate	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	Israel	2016-03-02	Undetermined	Undetermined	Whole Organism	All anatomical structures
40400	40400	SRR3166940	SRX1583793	SRS1295604	SRP070056	PRJNA309588	Analysis of the T cell response in Zebrafish	PRJNA309588	Other	Our understanding of T cell receptor TCR repertoire diversity and response tochallenge is still incomplete. For example TCR clones shared by different individuals withminimal alteration to germline gene sequences public clones are detectable in all vertebrates but their significance is unknown. We exploited the experimental advantages offered by thezebrafish to analyze the complete TCR repertoire and its response to self and foreign antigens.We found that cross reactive public TCRs dominate the T cell response endowing the TCRrepertoire with the ability to cope with diverse antigenic challenges. These features of vertebratepublic TCRs provide a mechanism for the rapid generation of protective T cell immunityallowing a short temporal window for the development of more specific private T cell responses.	TCRB library 21d KLH6	breed:AB\|chain:beta\|index:50\|sex:male\|time point:21d\|tissue:whole fish\|age:1y\|BioSampleModel:Model organism or animal	TCRb sequencing of zebrafish: whole zebrafish: Sample TCRB library 21d KLH6	78 21d KLH6 beta	78 21d KLH6 beta	five prime RACE amplification of TCRb transcript	AMPLICON	TRANSCRIPTOMIC	RACE	PAIRED	ILLUMINA	Illumina HiSeq 2000	<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>300</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>151</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>	SRP070056	read1_78_21d_KLH6_beta.fq.gz read2_78_21d_KLH6_beta.fq.gz	fastq fastq	1500221100.0	5000737.0	78 21d KLH6 beta files	0:150 1:150	A:435807096;C:294707078;G:337922064;T:361615328;N:70169534	150	150	435807096	294707078	337922064	361615328	70169534	SRX1583793	SRS1295604	SRA353254	SRA	Bar-Ilan University	2	5e-05	0.37212	3e-05	0.03128	0.99997	0.99358	0.0	0.11962	150	150	T	B	mate1 technical by mapping diff	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	Israel	2017-02-12	Undetermined	Undetermined	Whole Organism	All anatomical structures
40401	40401	SRR3166939	SRX1583792	SRS1295605	SRP070056	PRJNA309588	Analysis of the T cell response in Zebrafish	PRJNA309588	Other	Our understanding of T cell receptor TCR repertoire diversity and response tochallenge is still incomplete. For example TCR clones shared by different individuals withminimal alteration to germline gene sequences public clones are detectable in all vertebrates but their significance is unknown. We exploited the experimental advantages offered by thezebrafish to analyze the complete TCR repertoire and its response to self and foreign antigens.We found that cross reactive public TCRs dominate the T cell response endowing the TCRrepertoire with the ability to cope with diverse antigenic challenges. These features of vertebratepublic TCRs provide a mechanism for the rapid generation of protective T cell immunityallowing a short temporal window for the development of more specific private T cell responses.	TCRB library 21d KLH5	breed:AB\|chain:beta\|index:49\|sex:male\|time point:21d\|tissue:whole fish\|age:1y\|BioSampleModel:Model organism or animal	TCRb sequencing of zebrafish: whole zebrafish: Sample TCRB library 21d KLH5	77 21d KLH5 beta	77 21d KLH5 beta	five prime RACE amplification of TCRb transcript	AMPLICON	TRANSCRIPTOMIC	RACE	PAIRED	ILLUMINA	Illumina HiSeq 2000	<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>300</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>151</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>	SRP070056	read1_77_21d_KLH5_beta.fq.gz read2_77_21d_KLH5_beta.fq.gz	fastq fastq	2106732600.0	7022442.0	77 21d KLH5 beta files	0:150 1:150	A:696373936;C:376059887;G:465978414;T:465485185;N:102835178	150	150	696373936	376059887	465978414	465485185	102835178	SRX1583792	SRS1295605	SRA353254	SRA	Bar-Ilan University	2	0.0	0.04625	0.0	0.00381	1.0	0.99979		0.00123	150	150	T	T	mates < 9% mapping rate	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	Israel	2017-02-12	Undetermined	Undetermined	Whole Organism	All anatomical structures
40402	40402	SRR3166938	SRX1583791	SRS1295606	SRP070056	PRJNA309588	Analysis of the T cell response in Zebrafish	PRJNA309588	Other	Our understanding of T cell receptor TCR repertoire diversity and response tochallenge is still incomplete. For example TCR clones shared by different individuals withminimal alteration to germline gene sequences public clones are detectable in all vertebrates but their significance is unknown. We exploited the experimental advantages offered by thezebrafish to analyze the complete TCR repertoire and its response to self and foreign antigens.We found that cross reactive public TCRs dominate the T cell response endowing the TCRrepertoire with the ability to cope with diverse antigenic challenges. These features of vertebratepublic TCRs provide a mechanism for the rapid generation of protective T cell immunityallowing a short temporal window for the development of more specific private T cell responses.	TCRB library 21d KLH1	breed:AB\|chain:beta\|index:48\|sex:male\|time point:21d\|tissue:whole fish\|age:1y\|BioSampleModel:Model organism or animal	TCRb sequencing of zebrafish: whole zebrafish: Sample TCRB library 21d KLH1	73 21d KLH1 beta	73 21d KLH1 beta	five prime RACE amplification of TCRb transcript	AMPLICON	TRANSCRIPTOMIC	RACE	PAIRED	ILLUMINA	Illumina HiSeq 2000	<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>300</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>151</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>	SRP070056	read2_73_21d_KLH1_beta.fq.gz read1_73_21d_KLH1_beta.fq.gz	fastq fastq	3554391900.0	11847973.0	73 21d KLH1 beta files	0:150 1:150	A:1312477977;C:598886813;G:787337227;T:686894043;N:168795840	150	150	1312477977	598886813	787337227	686894043	168795840	SRX1583791	SRS1295606	SRA353254	SRA	Bar-Ilan University	2	6e-05	0.00136	5e-05	0.00019	1.0	0.99983		0.0303	150	150	T	T	mates < 9% mapping rate	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	Israel	2017-02-12	Undetermined	Undetermined	Whole Organism	All anatomical structures
40403	40403	SRR3166937	SRX1583790	SRS1295607	SRP070056	PRJNA309588	Analysis of the T cell response in Zebrafish	PRJNA309588	Other	Our understanding of T cell receptor TCR repertoire diversity and response tochallenge is still incomplete. For example TCR clones shared by different individuals withminimal alteration to germline gene sequences public clones are detectable in all vertebrates but their significance is unknown. We exploited the experimental advantages offered by thezebrafish to analyze the complete TCR repertoire and its response to self and foreign antigens.We found that cross reactive public TCRs dominate the T cell response endowing the TCRrepertoire with the ability to cope with diverse antigenic challenges. These features of vertebratepublic TCRs provide a mechanism for the rapid generation of protective T cell immunityallowing a short temporal window for the development of more specific private T cell responses.	TCRB library 21d PHA6	breed:AB\|chain:beta\|index:53\|sex:male\|time point:21d\|tissue:whole fish\|age:1y\|BioSampleModel:Model organism or animal	TCRb sequencing of zebrafish: whole zebrafish: Sample TCRB library 21d PHA6	70 21d PHA6 beta	70 21d PHA6 beta	five prime RACE amplification of TCRb transcript	AMPLICON	TRANSCRIPTOMIC	RACE	PAIRED	ILLUMINA	Illumina HiSeq 2000	<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>300</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>151</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>	SRP070056	read2_70_21d_PHA6_beta.fq.gz read1_70_21d_PHA6_beta.fq.gz	fastq fastq	4238076900.0	14126923.0	70 21d PHA6 beta files	0:150 1:150	A:1519543327;C:710498920;G:932091678;T:844220454;N:231722521	150	150	1519543327	710498920	932091678	844220454	231722521	SRX1583790	SRS1295607	SRA353254	SRA	Bar-Ilan University	2	0.00023	0.00772	7e-05	0.00068	0.99991	0.99851	0.25	0.08615	150	150	T	T	mates < 9% mapping rate	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	Israel	2017-02-12	Undetermined	Undetermined	Whole Organism	All anatomical structures
40404	40404	SRR3166936	SRX1583789	SRS1295608	SRP070056	PRJNA309588	Analysis of the T cell response in Zebrafish	PRJNA309588	Other	Our understanding of T cell receptor TCR repertoire diversity and response tochallenge is still incomplete. For example TCR clones shared by different individuals withminimal alteration to germline gene sequences public clones are detectable in all vertebrates but their significance is unknown. We exploited the experimental advantages offered by thezebrafish to analyze the complete TCR repertoire and its response to self and foreign antigens.We found that cross reactive public TCRs dominate the T cell response endowing the TCRrepertoire with the ability to cope with diverse antigenic challenges. These features of vertebratepublic TCRs provide a mechanism for the rapid generation of protective T cell immunityallowing a short temporal window for the development of more specific private T cell responses.	TCRB library 21d PHA4	breed:AB\|chain:beta\|index:52\|sex:male\|time point:21d\|tissue:whole fish\|age:1y\|BioSampleModel:Model organism or animal	TCRb sequencing of zebrafish: whole zebrafish: Sample TCRB library 21d PHA4	68 21d PHA4 beta	68 21d PHA4 beta	five prime RACE amplification of TCRb transcript	AMPLICON	TRANSCRIPTOMIC	RACE	PAIRED	ILLUMINA	Illumina HiSeq 2000	<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>300</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>151</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>	SRP070056	read1_68_21d_PHA4_beta.fq.gz read2_68_21d_PHA4_beta.fq.gz	fastq fastq	2030511600.0	6768372.0	68 21d PHA4 beta files	0:150 1:150	A:659873688;C:307551211;G:388669539;T:566328083;N:108089079	150	150	659873688	307551211	388669539	566328083	108089079	SRX1583789	SRS1295608	SRA353254	SRA	Bar-Ilan University	2	0.00029	0.24246	3e-05	0.05929	0.99971	0.99214	0.4	0.16492	150	150	T	B	mate1 technical by mapping diff	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	Israel	2017-02-12	Undetermined	Undetermined	Whole Organism	All anatomical structures
40405	40405	SRR3166935	SRX1583788	SRS1295609	SRP070056	PRJNA309588	Analysis of the T cell response in Zebrafish	PRJNA309588	Other	Our understanding of T cell receptor TCR repertoire diversity and response tochallenge is still incomplete. For example TCR clones shared by different individuals withminimal alteration to germline gene sequences public clones are detectable in all vertebrates but their significance is unknown. We exploited the experimental advantages offered by thezebrafish to analyze the complete TCR repertoire and its response to self and foreign antigens.We found that cross reactive public TCRs dominate the T cell response endowing the TCRrepertoire with the ability to cope with diverse antigenic challenges. These features of vertebratepublic TCRs provide a mechanism for the rapid generation of protective T cell immunityallowing a short temporal window for the development of more specific private T cell responses.	TCRB library 21d PHA1	breed:AB\|chain:beta\|index:51\|sex:male\|time point:21d\|tissue:whole fish\|age:1y\|BioSampleModel:Model organism or animal	TCRb sequencing of zebrafish: whole zebrafish: Sample TCRB library 21d PHA1	65 21d PHA1 beta	65 21d PHA1 beta	five prime RACE amplification of TCRb transcript	AMPLICON	TRANSCRIPTOMIC	RACE	PAIRED	ILLUMINA	Illumina HiSeq 2000	<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>300</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>151</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>	SRP070056	read1_65_21d_PHA1_beta.fq.gz read2_65_21d_PHA1_beta.fq.gz	fastq fastq	930240600.0	3100802.0	65 21d PHA1 beta files	0:150 1:150	A:259486434;C:184043790;G:197463162;T:250422190;N:38825024	150	150	259486434	184043790	197463162	250422190	38825024	SRX1583788	SRS1295609	SRA353254	SRA	Bar-Ilan University	2	0.00012	0.14868	0.0	0.02051	0.99963	0.99111	0.36842	0.258	150	150	T	B	mate1 technical by mapping diff	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	Israel	2017-02-12	Undetermined	Undetermined	Whole Organism	All anatomical structures
40406	40406	SRR3166934	SRX1583787	SRS1295610	SRP070056	PRJNA309588	Analysis of the T cell response in Zebrafish	PRJNA309588	Other	Our understanding of T cell receptor TCR repertoire diversity and response tochallenge is still incomplete. For example TCR clones shared by different individuals withminimal alteration to germline gene sequences public clones are detectable in all vertebrates but their significance is unknown. We exploited the experimental advantages offered by thezebrafish to analyze the complete TCR repertoire and its response to self and foreign antigens.We found that cross reactive public TCRs dominate the T cell response endowing the TCRrepertoire with the ability to cope with diverse antigenic challenges. These features of vertebratepublic TCRs provide a mechanism for the rapid generation of protective T cell immunityallowing a short temporal window for the development of more specific private T cell responses.	TCRB library 21d IFA 8	breed:AB\|chain:beta\|index:47\|sex:male\|time point:21d\|tissue:whole fish\|age:1y\|BioSampleModel:Model organism or animal	TCRb sequencing of zebrafish: whole zebrafish: Sample TCRB library 21d IFA 8	64 21d IFA 8 beta	64 21d IFA 8 beta	five prime RACE amplification of TCRb transcript	AMPLICON	TRANSCRIPTOMIC	RACE	PAIRED	ILLUMINA	Illumina HiSeq 2000	<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>300</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>151</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>	SRP070056	read1_64_21d_IFA_8_beta.fq.gz read2_64_21d_IFA_8_beta.fq.gz	fastq fastq	1461868800.0	4872896.0	64 21d IFA 8 beta files	0:150 1:150	A:462418747;C:247121586;G:284662907;T:394116911;N:73548649	150	150	462418747	247121586	284662907	394116911	73548649	SRX1583787	SRS1295610	SRA353254	SRA	Bar-Ilan University	2	0.0001	0.17532	0.0	0.04988	0.99983	0.99843	0.25	0.01908	150	150	T	B	mate1 technical by mapping diff	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	Israel	2017-02-12	Undetermined	Undetermined	Whole Organism	All anatomical structures
40407	40407	SRR3166933	SRX1583786	SRS1295611	SRP070056	PRJNA309588	Analysis of the T cell response in Zebrafish	PRJNA309588	Other	Our understanding of T cell receptor TCR repertoire diversity and response tochallenge is still incomplete. For example TCR clones shared by different individuals withminimal alteration to germline gene sequences public clones are detectable in all vertebrates but their significance is unknown. We exploited the experimental advantages offered by thezebrafish to analyze the complete TCR repertoire and its response to self and foreign antigens.We found that cross reactive public TCRs dominate the T cell response endowing the TCRrepertoire with the ability to cope with diverse antigenic challenges. These features of vertebratepublic TCRs provide a mechanism for the rapid generation of protective T cell immunityallowing a short temporal window for the development of more specific private T cell responses.	TCRB library 21d IFA 4	breed:AB\|chain:beta\|index:46\|sex:male\|time point:21d\|tissue:whole fish\|age:1y\|BioSampleModel:Model organism or animal	TCRb sequencing of zebrafish: whole zebrafish: Sample TCRB library 21d IFA 4	60 21d IFA 4 beta	60 21d IFA 4 beta	five prime RACE amplification of TCRb transcript	AMPLICON	TRANSCRIPTOMIC	RACE	PAIRED	ILLUMINA	Illumina HiSeq 2000	<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>300</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>151</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>	SRP070056	read2_60_21d_IFA_4_beta.fq.gz read1_60_21d_IFA_4_beta.fq.gz	fastq fastq	4128399900.0	13761333.0	60 21d IFA 4 beta files	0:150 1:150	A:1332478795;C:800389451;G:937176538;T:950735272;N:107619844	150	150	1332478795	800389451	937176538	950735272	107619844	SRX1583786	SRS1295611	SRA353254	SRA	Bar-Ilan University	2	0.00043	0.19668	5e-05	0.00597	0.99953	0.9782	0.2647	0.35656	150	150	T	B	mate1 technical by mapping diff	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	Israel	2017-02-12	Undetermined	Undetermined	Whole Organism	All anatomical structures
40408	40408	SRR3166932	SRX1583785	SRS1295612	SRP070056	PRJNA309588	Analysis of the T cell response in Zebrafish	PRJNA309588	Other	Our understanding of T cell receptor TCR repertoire diversity and response tochallenge is still incomplete. For example TCR clones shared by different individuals withminimal alteration to germline gene sequences public clones are detectable in all vertebrates but their significance is unknown. We exploited the experimental advantages offered by thezebrafish to analyze the complete TCR repertoire and its response to self and foreign antigens.We found that cross reactive public TCRs dominate the T cell response endowing the TCRrepertoire with the ability to cope with diverse antigenic challenges. These features of vertebratepublic TCRs provide a mechanism for the rapid generation of protective T cell immunityallowing a short temporal window for the development of more specific private T cell responses.	TCRB library 21d IFA 2	breed:AB\|chain:beta\|index:45\|sex:male\|time point:21d\|tissue:whole fish\|age:1y\|BioSampleModel:Model organism or animal	TCRb sequencing of zebrafish: whole zebrafish: Sample TCRB library 21d IFA 2	58 21d IFA 2 beta	58 21d IFA 2 beta	five prime RACE amplification of TCRb transcript	AMPLICON	TRANSCRIPTOMIC	RACE	PAIRED	ILLUMINA	Illumina HiSeq 2000	<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>300</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>151</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>	SRP070056	read2_58_21d_IFA_2_beta.fq.gz read1_58_21d_IFA_2_beta.fq.gz	fastq fastq	5035078800.0	16783596.0	58 21d IFA 2 beta files	0:150 1:150	A:1714919930;C:839542402;G:1121993893;T:1220614755;N:138007820	150	150	1714919930	839542402	1121993893	1220614755	138007820	SRX1583785	SRS1295612	SRA353254	SRA	Bar-Ilan University	2	0.0	0.17551	0.0	0.00318	1.0	0.99833		0.10802	150	150	T	B	mate1 technical by mapping diff	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	Israel	2016-03-02	Undetermined	Undetermined	Whole Organism	All anatomical structures
40409	40409	SRR3166931	SRX1583784	SRS1295613	SRP070056	PRJNA309588	Analysis of the T cell response in Zebrafish	PRJNA309588	Other	Our understanding of T cell receptor TCR repertoire diversity and response tochallenge is still incomplete. For example TCR clones shared by different individuals withminimal alteration to germline gene sequences public clones are detectable in all vertebrates but their significance is unknown. We exploited the experimental advantages offered by thezebrafish to analyze the complete TCR repertoire and its response to self and foreign antigens.We found that cross reactive public TCRs dominate the T cell response endowing the TCRrepertoire with the ability to cope with diverse antigenic challenges. These features of vertebratepublic TCRs provide a mechanism for the rapid generation of protective T cell immunityallowing a short temporal window for the development of more specific private T cell responses.	TCRB library 14d Calm6	breed:AB\|chain:beta\|index:37\|sex:male\|time point:14d\|tissue:whole fish\|age:1y\|BioSampleModel:Model organism or animal	TCRb sequencing of zebrafish: whole zebrafish: Sample TCRB library 14d Calm6	55 14d Calm6 beta	55 14d Calm6 beta	five prime RACE amplification of TCRb transcript	AMPLICON	TRANSCRIPTOMIC	RACE	PAIRED	ILLUMINA	Illumina HiSeq 2000	<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>300</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>151</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>	SRP070056	read1_55_14d_Calm6_beta.fq.gz read2_55_14d_Calm6_beta.fq.gz	fastq fastq	1028012700.0	3426709.0	55 14d Calm6 beta files	0:150 1:150	A:295958360;C:207583542;G:216651025;T:284035600;N:23784173	150	150	295958360	207583542	216651025	284035600	23784173	SRX1583784	SRS1295613	SRA353254	SRA	Bar-Ilan University	2	5e-05	0.16498	0.0	0.01748	0.99989	0.99253	0.33333	0.12385	150	150	T	B	mate1 technical by mapping diff	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	Israel	2016-03-02	Undetermined	Undetermined	Whole Organism	All anatomical structures
40410	40410	SRR3166930	SRX1583783	SRS1295614	SRP070056	PRJNA309588	Analysis of the T cell response in Zebrafish	PRJNA309588	Other	Our understanding of T cell receptor TCR repertoire diversity and response tochallenge is still incomplete. For example TCR clones shared by different individuals withminimal alteration to germline gene sequences public clones are detectable in all vertebrates but their significance is unknown. We exploited the experimental advantages offered by thezebrafish to analyze the complete TCR repertoire and its response to self and foreign antigens.We found that cross reactive public TCRs dominate the T cell response endowing the TCRrepertoire with the ability to cope with diverse antigenic challenges. These features of vertebratepublic TCRs provide a mechanism for the rapid generation of protective T cell immunityallowing a short temporal window for the development of more specific private T cell responses.	TCRB library Naive6	breed:AB\|chain:beta\|index:31\|sex:male\|tissue:whole fish\|age:1y\|BioSampleModel:Model organism or animal	TCRb sequencing of zebrafish: whole zebrafish: Sample TCRB library Naive6	126 Naive6 beta	126 Naive6 beta	five prime RACE amplification of TCRb transcript	AMPLICON	TRANSCRIPTOMIC	RACE	PAIRED	ILLUMINA	Illumina HiSeq 2000	<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>300</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>151</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>	SRP070056	read2_126_Naive6_beta.fq.gz read1_126_Naive6_beta.fq.gz	fastq fastq	1984909800.0	6616366.0	126 Naive6 beta files	0:150 1:150	A:574002364;C:411972224;G:452963561;T:493883048;N:52088603	150	150	574002364	411972224	452963561	493883048	52088603	SRX1583783	SRS1295614	SRA353254	SRA	Bar-Ilan University	2	0.0007	0.73767	5e-05	0.01562	0.99928	0.9754	0.16	0.44061	150	150	T	B	mate1 technical by mapping diff	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	Israel	2017-02-12	Undetermined	Undetermined	Whole Organism	All anatomical structures
40411	40411	SRR3166929	SRX1583782	SRS1295615	SRP070056	PRJNA309588	Analysis of the T cell response in Zebrafish	PRJNA309588	Other	Our understanding of T cell receptor TCR repertoire diversity and response tochallenge is still incomplete. For example TCR clones shared by different individuals withminimal alteration to germline gene sequences public clones are detectable in all vertebrates but their significance is unknown. We exploited the experimental advantages offered by thezebrafish to analyze the complete TCR repertoire and its response to self and foreign antigens.We found that cross reactive public TCRs dominate the T cell response endowing the TCRrepertoire with the ability to cope with diverse antigenic challenges. These features of vertebratepublic TCRs provide a mechanism for the rapid generation of protective T cell immunityallowing a short temporal window for the development of more specific private T cell responses.	TCRB library 14d IFA1	breed:AB\|chain:beta\|index:38\|sex:male\|time point:14d\|tissue:whole fish\|age:1y\|BioSampleModel:Model organism or animal	TCRb sequencing of zebrafish: whole zebrafish: Sample TCRB library 14d IFA1	36 14d IFA1 beta	36 14d IFA1 beta	five prime RACE amplification of TCRb transcript	AMPLICON	TRANSCRIPTOMIC	RACE	PAIRED	ILLUMINA	Illumina HiSeq 2000	<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>300</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>151</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>	SRP070056	read2_36_14d_IFA1_beta.fq.gz read1_36_14d_IFA1_beta.fq.gz	fastq fastq	2641709400.0	8805698.0	36 14d IFA1 beta files	0:150 1:150	A:828430279;C:516389015;G:603137557;T:652458512;N:41294037	150	150	828430279	516389015	603137557	652458512	41294037	SRX1583782	SRS1295615	SRA353254	SRA	Bar-Ilan University	2	6e-05	0.17777	1e-05	0.00441	0.99991	0.99243	0.5	0.07212	150	150	T	B	mate1 technical by mapping diff	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	Israel	2017-02-12	Undetermined	Undetermined	Whole Organism	All anatomical structures
40412	40412	SRR3166928	SRX1583781	SRS1295616	SRP070056	PRJNA309588	Analysis of the T cell response in Zebrafish	PRJNA309588	Other	Our understanding of T cell receptor TCR repertoire diversity and response tochallenge is still incomplete. For example TCR clones shared by different individuals withminimal alteration to germline gene sequences public clones are detectable in all vertebrates but their significance is unknown. We exploited the experimental advantages offered by thezebrafish to analyze the complete TCR repertoire and its response to self and foreign antigens.We found that cross reactive public TCRs dominate the T cell response endowing the TCRrepertoire with the ability to cope with diverse antigenic challenges. These features of vertebratepublic TCRs provide a mechanism for the rapid generation of protective T cell immunityallowing a short temporal window for the development of more specific private T cell responses.	TCRB library 14d PHA7	breed:AB\|chain:beta\|index:41\|sex:male\|time point:14d\|tissue:whole fish\|age:1y\|BioSampleModel:Model organism or animal	TCRb sequencing of zebrafish: whole zebrafish: Sample TCRB library 14d PHA7	35 14d PHA7 beta	35 14d PHA7 beta	five prime RACE amplification of TCRb transcript	AMPLICON	TRANSCRIPTOMIC	RACE	PAIRED	ILLUMINA	Illumina HiSeq 2000	<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>300</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>151</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>	SRP070056	read2_35_14d_PHA7_beta.fq.gz read1_35_14d_PHA7_beta.fq.gz	fastq fastq	2481744900.0	8272483.0	35 14d PHA7 beta files	0:150 1:150	A:684148801;C:534638425;G:555073374;T:671216692;N:36667608	150	150	684148801	534638425	555073374	671216692	36667608	SRX1583781	SRS1295616	SRA353254	SRA	Bar-Ilan University	2	0.00054	0.3447	8e-05	0.03511	0.9991	0.97049	0.29411	0.37357	150	150	T	B	mate1 technical by mapping diff	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	Israel	2017-02-12	Undetermined	Undetermined	Whole Organism	All anatomical structures
40413	40413	SRR3166927	SRX1583780	SRS1295617	SRP070056	PRJNA309588	Analysis of the T cell response in Zebrafish	PRJNA309588	Other	Our understanding of T cell receptor TCR repertoire diversity and response tochallenge is still incomplete. For example TCR clones shared by different individuals withminimal alteration to germline gene sequences public clones are detectable in all vertebrates but their significance is unknown. We exploited the experimental advantages offered by thezebrafish to analyze the complete TCR repertoire and its response to self and foreign antigens.We found that cross reactive public TCRs dominate the T cell response endowing the TCRrepertoire with the ability to cope with diverse antigenic challenges. These features of vertebratepublic TCRs provide a mechanism for the rapid generation of protective T cell immunityallowing a short temporal window for the development of more specific private T cell responses.	TCRB library 14d PHA6	breed:AB\|chain:beta\|index:40\|sex:male\|time point:14d\|tissue:whole fish\|age:1y\|BioSampleModel:Model organism or animal	TCRb sequencing of zebrafish: whole zebrafish: Sample TCRB library 14d PHA6	34 14d PHA6 beta	34 14d PHA6 beta	five prime RACE amplification of TCRb transcript	AMPLICON	TRANSCRIPTOMIC	RACE	PAIRED	ILLUMINA	Illumina HiSeq 2000	<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>300</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>151</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>	SRP070056	read1_34_14d_PHA6_beta.fq.gz read2_34_14d_PHA6_beta.fq.gz	fastq fastq	2149899000.0	7166330.0	34 14d PHA6 beta files	0:150 1:150	A:603640552;C:452244383;G:474826068;T:587177894;N:32010103	150	150	603640552	452244383	474826068	587177894	32010103	SRX1583780	SRS1295617	SRA353254	SRA	Bar-Ilan University	2	4e-05	0.16994	0.0	0.14727	0.99991	0.99342	0.0	0.31047	150	150	T	B	mate1 technical by mapping diff	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	Israel	2016-03-02	Undetermined	Undetermined	Whole Organism	All anatomical structures
40414	40414	SRR3166926	SRX1583779	SRS1295618	SRP070056	PRJNA309588	Analysis of the T cell response in Zebrafish	PRJNA309588	Other	Our understanding of T cell receptor TCR repertoire diversity and response tochallenge is still incomplete. For example TCR clones shared by different individuals withminimal alteration to germline gene sequences public clones are detectable in all vertebrates but their significance is unknown. We exploited the experimental advantages offered by thezebrafish to analyze the complete TCR repertoire and its response to self and foreign antigens.We found that cross reactive public TCRs dominate the T cell response endowing the TCRrepertoire with the ability to cope with diverse antigenic challenges. These features of vertebratepublic TCRs provide a mechanism for the rapid generation of protective T cell immunityallowing a short temporal window for the development of more specific private T cell responses.	TCRB library 14d PHA5	breed:AB\|chain:beta\|index:39\|sex:male\|time point:14d\|tissue:whole fish\|age:1y\|BioSampleModel:Model organism or animal	TCRb sequencing of zebrafish: whole zebrafish: Sample TCRB library 14d PHA5	33 14d PHA5 beta	33 14d PHA5 beta	five prime RACE amplification of TCRb transcript	AMPLICON	TRANSCRIPTOMIC	RACE	PAIRED	ILLUMINA	Illumina HiSeq 2000	<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>300</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>151</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>	SRP070056	read1_33_14d_PHA5_beta.fq.gz read2_33_14d_PHA5_beta.fq.gz	fastq fastq	4781329500.0	15937765.0	33 14d PHA5 beta files	0:150 1:150	A:1564269921;C:790001191;G:1015752339;T:1331170138;N:80135911	150	150	1564269921	790001191	1015752339	1331170138	80135911	SRX1583779	SRS1295618	SRA353254	SRA	Bar-Ilan University	2	0.00034	0.20127	0.00018	0.00887	0.99989	0.99567	0.05263	0.08667	150	150	T	B	mate1 technical by mapping diff	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	Israel	2016-03-02	Undetermined	Undetermined	Whole Organism	All anatomical structures
42968	42968	SRR5892584	SRX3058354	SRS2404188	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	MF	breed:TU\|isolation source:lab\|collection date:2017 01 27\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:MF REF DMSO 3\|BioSampleModel:Invertebrate	MF DMSO 3	40	40	solvent control for MF treatments replication 3	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	MF-DMSO-3.gz	fastq	125472592.0	1204687.0	MF DMSO 3.gz	0:104.15	A:29674919;C:33269421;G:33090427;T:29437825;N:0	104		29674919	33269421	33090427	29437825	0	SRX3058354	SRS2404188	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.96782		0.00028		0.97096		0.44758		89		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
42969	42969	SRR5892585	SRX3058353	SRS2404188	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	MF	breed:TU\|isolation source:lab\|collection date:2017 01 27\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:MF REF DMSO 3\|BioSampleModel:Invertebrate	MF DMSO 2	39	39	solvent control for MF treatments replication 2	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	MF-DMSO-2.gz	fastq	99884913.0	971141.0	MF DMSO 2.gz	0:102.85	A:23598949;C:26322425;G:26544412;T:23419127;N:0	102		23598949	26322425	26544412	23419127	0	SRX3058353	SRS2404188	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.97296		0.00027		0.97092		0.46658		95		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
42970	42970	SRR5892586	SRX3058352	SRS2404189	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	DMSO	breed:TU\|isolation source:lab\|collection date:2016 11 07\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:DMSO 1 batchA\|BioSampleModel:Invertebrate	DMSO batchD 2	71	71	embryo post 8 32hpf solvent control exposurereplication 2 in forth batch	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	DMSO-batch4-2.gz	fastq	121679118.0	1146532.0	DMSO batchD 2.gz	0:106.13	A:28957172;C:31903260;G:31955173;T:28863513;N:0	106		28957172	31903260	31955173	28863513	0	SRX3058352	SRS2404189	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.94833		0.0003		0.97019		0.46856		99		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
42971	42971	SRR5892587	SRX3058351	SRS2404189	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	DMSO	breed:TU\|isolation source:lab\|collection date:2016 11 07\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:DMSO 1 batchA\|BioSampleModel:Invertebrate	DMSO batchE 1	73	73	embryo post 8 32hpf solvent control exposurereplication 1 in fifth batch	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	DMSO-batch5-1.gz	fastq	123397953.0	1167071.0	DMSO batchE 1.gz	0:105.73	A:28979230;C:32683758;G:32531951;T:29203014;N:0	105		28979230	32683758	32531951	29203014	0	SRX3058351	SRS2404189	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.95859		0.00022		0.97072		0.45965		53		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
42972	42972	SRR5892588	SRX3058350	SRS2404188	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	MF	breed:TU\|isolation source:lab\|collection date:2017 01 27\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:MF REF DMSO 3\|BioSampleModel:Invertebrate	MF REF2	32	32	embryo post 8 32hpf 2 REF MFexposure	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	MF-REF2.gz	fastq	118386968.0	1138153.0	MF REF2.gz	0:104.02	A:27897906;C:31473696;G:31180817;T:27834549;N:0	104		27897906	31473696	31180817	27834549	0	SRX3058350	SRS2404188	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.97077		0.00031		0.97078		0.4628		98		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
42973	42973	SRR5892589	SRX3058349	SRS2404188	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	MF	breed:TU\|isolation source:lab\|collection date:2017 01 27\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:MF REF DMSO 3\|BioSampleModel:Invertebrate	MF REF10	31	31	embryo post 8 32hpf 10 REF MF exposure	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	MF-REF10.gz	fastq	102454725.0	1000173.0	MF REF10.gz	0:102.44	A:24358570;C:27069059;G:26881004;T:24146092;N:0	102		24358570	27069059	26881004	24146092	0	SRX3058349	SRS2404188	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.97646		0.00032		0.97096		0.44494		99		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
42974	42974	SRR5892590	SRX3058348	SRS2404188	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	MF	breed:TU\|isolation source:lab\|collection date:2017 01 27\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:MF REF DMSO 3\|BioSampleModel:Invertebrate	MF REF0.08	34	34	embryo post 8 32hpf 0.08 REF MF exposure	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	MF-REF0.08.gz	fastq	120057844.0	1117682.0	MF REF0.08.gz	0:107.42	A:28224691;C:31792991;G:31542256;T:28497906;N:0	107		28224691	31792991	31542256	28497906	0	SRX3058348	SRS2404188	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.95452		0.0002		0.97114		0.45435		99		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
42975	42975	SRR5892591	SRX3058347	SRS2404188	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	MF	breed:TU\|isolation source:lab\|collection date:2017 01 27\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:MF REF DMSO 3\|BioSampleModel:Invertebrate	MF REF0.4	33	33	embryo post 8 32hpf 0.4 REF MF exposure	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	MF-REF0.4.gz	fastq	180105044.0	1745166.0	MF REF0.4.gz	0:103.20	A:42458831;C:47872884;G:47284824;T:42488505;N:0	103		42458831	47872884	47284824	42488505	0	SRX3058347	SRS2404188	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.97346		0.0003		0.97076		0.4492		99		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
42976	42976	SRR5892592	SRX3058346	SRS2404188	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	MF	breed:TU\|isolation source:lab\|collection date:2017 01 27\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:MF REF DMSO 3\|BioSampleModel:Invertebrate	MF REF0.0032	36	36	embryo post 8 32hpf 0.0032 REF MF exposure	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	MF-REF0.0032.gz	fastq	118651783.0	1150496.0	MF REF0.0032.gz	0:103.13	A:28100611;C:31226792;G:31323929;T:28000451;N:0	103		28100611	31226792	31323929	28000451	0	SRX3058346	SRS2404188	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.97372		0.00029		0.97076		0.44374		209		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
42977	42977	SRR5892593	SRX3058345	SRS2404188	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	MF	breed:TU\|isolation source:lab\|collection date:2017 01 27\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:MF REF DMSO 3\|BioSampleModel:Invertebrate	MF REF0.016	35	35	embryo post 8 32hpf 0.016 REF MF exposure	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	MF-REF0.016.gz	fastq	120264407.0	1144665.0	MF REF0.016.gz	0:105.07	A:28327111;C:31914661;G:31543876;T:28478759;N:0	105		28327111	31914661	31543876	28478759	0	SRX3058345	SRS2404188	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.96809		0.00037		0.97021		0.476		95		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
42978	42978	SRR5892594	SRX3058344	SRS2404188	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	MF	breed:TU\|isolation source:lab\|collection date:2017 01 27\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:MF REF DMSO 3\|BioSampleModel:Invertebrate	MF DMSO 1	38	38	solvent control for MF treatments replication 1	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	MF-DMSO-1.gz	fastq	112685903.0	1086206.0	MF DMSO 1.gz	0:103.74	A:26477784;C:30135462;G:29566470;T:26506187;N:0	103		26477784	30135462	29566470	26506187	0	SRX3058344	SRS2404188	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.96856		0.00033		0.97053		0.47169		99		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
42979	42979	SRR5892595	SRX3058343	SRS2404188	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	MF	breed:TU\|isolation source:lab\|collection date:2017 01 27\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:MF REF DMSO 3\|BioSampleModel:Invertebrate	MF REF0.00064	37	37	embryo post 8 32hpf 0.00064 REF MF exposure	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	MF-REF0.00064.gz	fastq	138041498.0	1329985.0	MF REF0.00064.gz	0:103.79	A:32831449;C:36507596;G:36517879;T:32184574;N:0	103		32831449	36507596	36517879	32184574	0	SRX3058343	SRS2404188	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.9711		0.00032		0.97037		0.45908		99		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
42980	42980	SRR5892596	SRX3058342	SRS2404190	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	BPA	breed:TU\|isolation source:lab\|collection date:2017 01 13\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:BPA 10 1 batchA\|BioSampleModel:Invertebrate	BPA batchA DMSO 3	14	14	solvent control for BPA treatments replication 3	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	BPA-batch1-DMSO-3.gz	fastq	128677198.0	1267014.0	BPA batchA DMSO 3.gz	0:101.56	A:30121409;C:34158183;G:33947254;T:30450352;N:0	101		30121409	34158183	33947254	30450352	0	SRX3058342	SRS2404190	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.9747		0.00038		0.96997		0.45436		39		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
42981	42981	SRR5892597	SRX3058341	SRS2404190	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	BPA	breed:TU\|isolation source:lab\|collection date:2017 01 13\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:BPA 10 1 batchA\|BioSampleModel:Invertebrate	BPA batchA DMSO 2	13	13	solvent control for BPA treatments replication 2	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	BPA-batch1-DMSO-2.gz	fastq	139753534.0	1344733.0	BPA batchA DMSO 2.gz	0:103.93	A:32634342;C:37124460;G:36974717;T:33020015;N:0	103		32634342	37124460	36974717	33020015	0	SRX3058341	SRS2404190	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.96389		0.0003		0.97061		0.4625		130		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
42982	42982	SRR5892598	SRX3058340	SRS2404190	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	BPA	breed:TU\|isolation source:lab\|collection date:2017 01 13\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:BPA 10 1 batchA\|BioSampleModel:Invertebrate	BPA batchA DMSO 1	12	12	solvent control for BPA treatments replication 1	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	BPA-batch1-DMSO-1.gz	fastq	87146396.0	838028.0	BPA batchA DMSO 1.gz	0:103.99	A:20425737;C:23194839;G:22979017;T:20546803;N:0	103		20425737	23194839	22979017	20546803	0	SRX3058340	SRS2404190	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.96674		0.00031		0.97023		0.45374		293		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
42983	42983	SRR5892599	SRX3058339	SRS2404190	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	BPA	breed:TU\|isolation source:lab\|collection date:2017 01 13\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:BPA 10 1 batchA\|BioSampleModel:Invertebrate	BPA batchA 0.00001米收	11	11	embryo post 8 32hpf 0.00001米收 BPA exposure	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	BPA-batch1-0.00001.gz	fastq	181136622.0	1697148.0	BPA batchA 0.00001.gz	0:106.73	A:42674421;C:48091657;G:47628809;T:42741735;N:0	106		42674421	48091657	47628809	42741735	0	SRX3058339	SRS2404190	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.94555		0.00034		0.96995		0.46606		127		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
42984	42984	SRR5892600	SRX3058338	SRS2404190	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	BPA	breed:TU\|isolation source:lab\|collection date:2017 01 13\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:BPA 10 1 batchA\|BioSampleModel:Invertebrate	BPA batchB DMSO 1	18	18	solvent control for BPA treatments replication 1 of second batch	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	BPA-batch2-DMSO-1.gz	fastq	190360408.0	1826565.0	BPA batchB DMSO 1.gz	0:104.22	A:45053834;C:50530050;G:49994950;T:44781574;N:0	104		45053834	50530050	49994950	44781574	0	SRX3058338	SRS2404190	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.95851		0.0005		0.97064		0.48533		98		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
42985	42985	SRR5892601	SRX3058337	SRS2404190	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	BPA	breed:TU\|isolation source:lab\|collection date:2017 01 13\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:BPA 10 1 batchA\|BioSampleModel:Invertebrate	BPA batchB 10米收 3	17	17	embryo post 8 32hpf 10米收 BPA exposure replication 3 of second batch	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	BPA-batch2-10-3.gz	fastq	129958171.0	1234884.0	BPA batchB 10 3.gz	0:105.24	A:30593687;C:34649249;G:33959196;T:30756039;N:0	105		30593687	34649249	33959196	30756039	0	SRX3058337	SRS2404190	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.95837		0.00038		0.97021		0.43259		90		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
42986	42986	SRR5892602	SRX3058336	SRS2404190	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	BPA	breed:TU\|isolation source:lab\|collection date:2017 01 13\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:BPA 10 1 batchA\|BioSampleModel:Invertebrate	BPA batchB 10米收 2	16	16	embryo post 8 32hpf 10米收 BPA exposure replication 2 of second batch	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	BPA-batch2-10-2.gz	fastq	111526287.0	1065508.0	BPA batchB 10 2.gz										SRX3058336	SRS2404190	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.95874		0.00036		0.97088		0.47485		91		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
42987	42987	SRR5892603	SRX3058335	SRS2404190	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	BPA	breed:TU\|isolation source:lab\|collection date:2017 01 13\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:BPA 10 1 batchA\|BioSampleModel:Invertebrate	BPA batchB 10米收 1	15	15	embryo post 8 32hpf 10米收 BPA exposure replication 1 of second batch	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	BPA-batch2-10-1.gz	fastq	148236004.0	1405950.0	BPA batchB 10 1.gz	0:105.43	A:34932381;C:39440691;G:38952209;T:34910723;N:0	105		34932381	39440691	38952209	34910723	0	SRX3058335	SRS2404190	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.94847		0.00039		0.97104		0.44543		147		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
42988	42988	SRR5892604	SRX3058334	SRS2404191	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	RW	breed:TU\|isolation source:lab\|collection date:2017 01 27\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:RW REF10\|BioSampleModel:Invertebrate	RW DMSO 1	58	58	solvent control for RW treatments replication 1	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	RW-DMSO-1.gz	fastq	90296522.0	881436.0	RW DMSO 1.gz	0:102.44	A:21245787;C:24001505;G:23627578;T:21421652;N:0	102		21245787	24001505	23627578	21421652	0	SRX3058334	SRS2404191	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.97259		0.00038		0.97059		0.46653		89		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
42989	42989	SRR5892605	SRX3058333	SRS2404191	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	RW	breed:TU\|isolation source:lab\|collection date:2017 01 27\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:RW REF10\|BioSampleModel:Invertebrate	RW REF0.00064	57	57	embryo post 8 32hpf 0.00064 REF RW exposure	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	RW-REF0.00064.gz	fastq	119148594.0	1136559.0	RW REF0.00064.gz	0:104.83	A:28408032;C:31308813;G:31437438;T:27994311;N:0	104		28408032	31308813	31437438	27994311	0	SRX3058333	SRS2404191	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.96623		0.00038		0.97041		0.46244		99		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
42990	42990	SRR5892606	SRX3058332	SRS2404190	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	BPA	breed:TU\|isolation source:lab\|collection date:2017 01 13\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:BPA 10 1 batchA\|BioSampleModel:Invertebrate	BPA batchB DMSO 3	20	20	solvent control for BPA treatments replication 3 of second batch	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	BPA-batch2-DMSO-3.gz	fastq	132185040.0	1292999.0	BPA batchB DMSO 3.gz	0:102.23	A:31141243;C:35151786;G:34801554;T:31090457;N:0	102		31141243	35151786	34801554	31090457	0	SRX3058332	SRS2404190	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.96648		0.00044		0.9712		0.46006		89		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
42991	42991	SRR5892607	SRX3058331	SRS2404190	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	BPA	breed:TU\|isolation source:lab\|collection date:2017 01 13\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:BPA 10 1 batchA\|BioSampleModel:Invertebrate	BPA batchB DMSO 2	19	19	solvent control for BPA treatments replication 2 of second batch	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	BPA-batch2-DMSO-2.gz	fastq	198715047.0	1945773.0	BPA batchB DMSO 2.gz	0:102.13	A:46860862;C:52753060;G:52418957;T:46682168;N:0	102		46860862	52753060	52418957	46682168	0	SRX3058331	SRS2404190	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.96434		0.00054		0.97102		0.48108		89		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
42992	42992	SRR5892608	SRX3058330	SRS2404191	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	RW	breed:TU\|isolation source:lab\|collection date:2017 01 27\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:RW REF10\|BioSampleModel:Invertebrate	RW REF0.08	54	54	embryo post 8 32hpf 0.08 REF RW exposure	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	RW-REF0.08.gz	fastq	127136654.0	1214911.0	RW REF0.08.gz	0:104.65	A:30233425;C:33478062;G:33472258;T:29952909;N:0	104		30233425	33478062	33472258	29952909	0	SRX3058330	SRS2404191	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.96691		0.0003		0.97055		0.46819		99		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
42993	42993	SRR5892609	SRX3058329	SRS2404191	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	RW	breed:TU\|isolation source:lab\|collection date:2017 01 27\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:RW REF10\|BioSampleModel:Invertebrate	RW REF0.4	53	53	embryo post 8 32hpf 0.4 REF RW exposure	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	RW-REF0.4.gz	fastq	129289322.0	1244319.0	RW REF0.4.gz	0:103.90	A:30777918;C:34167997;G:33984655;T:30358752;N:0	103		30777918	34167997	33984655	30358752	0	SRX3058329	SRS2404191	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.97109		0.00047		0.97068		0.45379		99		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
42994	42994	SRR5892610	SRX3058328	SRS2404191	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	RW	breed:TU\|isolation source:lab\|collection date:2017 01 27\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:RW REF10\|BioSampleModel:Invertebrate	RW REF2	52	52	embryo post 8 32hpf 2 REF RW exposure	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	RW-REF2.gz	fastq	135626205.0	1336064.0	RW REF2.gz	0:101.51	A:31940807;C:35945322;G:35661876;T:32078200;N:0	101		31940807	35945322	35661876	32078200	0	SRX3058328	SRS2404191	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.97398		0.00037		0.971		0.44795		101		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
42995	42995	SRR5892611	SRX3058327	SRS2404191	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	RW	breed:TU\|isolation source:lab\|collection date:2017 01 27\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:RW REF10\|BioSampleModel:Invertebrate	RW REF10	51	51	embryo post 8 32hpf 10 REF RW exposure	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	RW-REF10.gz	fastq	114472762.0	1101957.0	RW REF10.gz	0:103.88	A:27165344;C:30313463;G:29951959;T:27041996;N:0	103		27165344	30313463	29951959	27041996	0	SRX3058327	SRS2404191	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.96908		0.0003		0.9709		0.47528		94		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
42996	42996	SRR5892612	SRX3058326	SRS2404191	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	RW	breed:TU\|isolation source:lab\|collection date:2017 01 27\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:RW REF10\|BioSampleModel:Invertebrate	RW REF0.0032	56	56	embryo post 8 32hpf 0.0032 REF RW exposure	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	RW-REF0.0032.gz	fastq	132020159.0	1278212.0	RW REF0.0032.gz	0:103.29	A:31188115;C:34954540;G:34762155;T:31115349;N:0	103		31188115	34954540	34762155	31115349	0	SRX3058326	SRS2404191	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.96987		0.00023		0.97128		0.4595		99		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
42997	42997	SRR5892613	SRX3058325	SRS2404189	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	DMSO	breed:TU\|isolation source:lab\|collection date:2016 11 07\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:DMSO 1 batchA\|BioSampleModel:Invertebrate	DMSO batchE 3	75	75	embryo post 8 32hpf solvent control exposurereplication 3 in fifth batch	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	DMSO-batch5-3.gz	fastq	134422048.0	1283130.0	DMSO batchE 3.gz	0:104.76	A:32023899;C:35569650;G:34994035;T:31834464;N:0	104		32023899	35569650	34994035	31834464	0	SRX3058325	SRS2404189	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.96792		0.00025		0.97023		0.47309		98		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
42998	42998	SRR5892614	SRX3058324	SRS2404191	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	RW	breed:TU\|isolation source:lab\|collection date:2017 01 27\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:RW REF10\|BioSampleModel:Invertebrate	RW REF0.016	55	55	embryo post 8 32hpf 0.016 REF RW exposure	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	RW-REF0.016.gz	fastq	89401238.0	882005.0	RW REF0.016.gz	0:101.36	A:21088292;C:23716541;G:23507120;T:21089285;N:0	101		21088292	23716541	23507120	21089285	0	SRX3058324	SRS2404191	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.97867		0.00029		0.97149		0.45787		98		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
42999	42999	SRR5892615	SRX3058323	SRS2404190	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	BPA	breed:TU\|isolation source:lab\|collection date:2017 01 13\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:BPA 10 1 batchA\|BioSampleModel:Invertebrate	BPA batchA 10米收 2	2	2	embryo post 8 32hpf 10米收 BPA exposure replication 2	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	BPA-batch1-10-2.gz	fastq	80529137.0	762390.0	BPA batchA 10 2.gz	0:105.63	A:18846226;C:21468380;G:21127663;T:19086868;N:0	105		18846226	21468380	21127663	19086868	0	SRX3058323	SRS2404190	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.96077		0.00029		0.97017		0.46214		127		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
43000	43000	SRR5892811	SRX3058322	SRS2404190	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	BPA	breed:TU\|isolation source:lab\|collection date:2017 01 13\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:BPA 10 1 batchA\|BioSampleModel:Invertebrate	BPA batchA 10米收 1	1	1	embryo post 8 32hpf 10米收 BPA exposure replication 1	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	BPA-batch1-10-1.gz	fastq	73829118.0	703769.0	BPA batchA 10 1	0:104.91	A:17327831;C:19655363;G:19439000;T:17406924;N:0	104		17327831	19655363	19439000	17406924	0	SRX3058322	SRS2404190	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.95952		0.00034		0.97005		0.44908		107		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
43001	43001	SRR5892616	SRX3058321	SRS2404190	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	BPA	breed:TU\|isolation source:lab\|collection date:2017 01 13\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:BPA 10 1 batchA\|BioSampleModel:Invertebrate	BPA batchA 1米收	4	4	embryo post 8 32hpf 1米收 BPA exposure	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	BPA-batch1-1.gz	fastq	78363051.0	736886.0	BPA batchA 1.gz	0:106.34	A:18388411;C:20802214;G:20646949;T:18525477;N:0	106		18388411	20802214	20646949	18525477	0	SRX3058321	SRS2404190	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.95116		0.00033		0.9707		0.4582		62		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
43002	43002	SRR5892617	SRX3058320	SRS2404190	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	BPA	breed:TU\|isolation source:lab\|collection date:2017 01 13\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:BPA 10 1 batchA\|BioSampleModel:Invertebrate	BPA batchA 10米收 3	3	3	embryo post 8 32hpf 10米收 BPA exposure replication 3	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	BPA-batch1-10-3.gz	fastq	80165508.0	756264.0	BPA batchA 10 3.gz	0:106.00	A:18721565;C:21425571;G:21071998;T:18946374;N:0	106		18721565	21425571	21071998	18946374	0	SRX3058320	SRS2404190	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.95754		0.0004		0.97011		0.43712		84		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
43003	43003	SRR5892618	SRX3058319	SRS2404190	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	BPA	breed:TU\|isolation source:lab\|collection date:2017 01 13\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:BPA 10 1 batchA\|BioSampleModel:Invertebrate	BPA batchA 0.1米收 2	6	6	embryo post 8 32hpf 0.1米收 BPA exposure replication 2	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	BPA-batch1-0.1-2.gz	fastq	179856447.0	1717239.0	BPA batchA 0.1 2.gz	0:104.74	A:42432781;C:47571274;G:47195620;T:42656772;N:0	104		42432781	47571274	47195620	42656772	0	SRX3058319	SRS2404190	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.95824		0.00044		0.97053		0.49329		180		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
43004	43004	SRR5892619	SRX3058318	SRS2404190	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	BPA	breed:TU\|isolation source:lab\|collection date:2017 01 13\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:BPA 10 1 batchA\|BioSampleModel:Invertebrate	BPA batchA 0.1米收 1	5	5	embryo post 8 32hpf 0.1米收 BPA exposure replication 1	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	BPA-batch1-0.1-1.gz	fastq	61360908.0	585502.0	BPA batchA 0.1 1.gz	0:104.80	A:14340320;C:16321670;G:16194989;T:14503929;N:0	104		14340320	16321670	16194989	14503929	0	SRX3058318	SRS2404190	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.96519		0.0002		0.97074		0.48732		45		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
43005	43005	SRR5892620	SRX3058317	SRS2404190	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	BPA	breed:TU\|isolation source:lab\|collection date:2017 01 13\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:BPA 10 1 batchA\|BioSampleModel:Invertebrate	BPA batchA 0.01米收	8	8	embryo post 8 32hpf 0.01米收 BPA exposure	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	BPA-batch1-0.01.gz	fastq	65748354.0	627138.0	BPA batchA 0.01.gz	0:104.84	A:15364594;C:17538856;G:17342236;T:15502668;N:0	104		15364594	17538856	17342236	15502668	0	SRX3058317	SRS2404190	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.9598		0.00022		0.97112		0.44717		138		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
43006	43006	SRR5892621	SRX3058316	SRS2404190	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	BPA	breed:TU\|isolation source:lab\|collection date:2017 01 13\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:BPA 10 1 batchA\|BioSampleModel:Invertebrate	BPA batchA 0.1米收 3	7	7	embryo post 8 32hpf 0.1米收 BPA exposure replication 3	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	BPA-batch1-0.1-3.gz	fastq	266147560.0	2552789.0	BPA batchA 0.1 3.gz	0:104.26	A:62870702;C:70586109;G:69904862;T:62785887;N:0	104		62870702	70586109	69904862	62785887	0	SRX3058316	SRS2404190	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.96039		0.00038		0.97096		0.45805		99		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
43007	43007	SRR5892622	SRX3058315	SRS2404189	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	DMSO	breed:TU\|isolation source:lab\|collection date:2016 11 07\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:DMSO 1 batchA\|BioSampleModel:Invertebrate	DMSO batchC 3	69	69	embryo post 8 32hpf solvent control exposurereplication 3 in third batch	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	DMSO-batch3-3.gz	fastq	229568543.0	2215642.0	DMSO batchC 3.gz	0:103.61	A:54491696;C:60494539;G:60307399;T:54274909;N:0	103		54491696	60494539	60307399	54274909	0	SRX3058315	SRS2404189	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.96381		0.00039		0.96909		0.46232		99		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
43008	43008	SRR5892623	SRX3058314	SRS2404190	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	BPA	breed:TU\|isolation source:lab\|collection date:2017 01 13\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:BPA 10 1 batchA\|BioSampleModel:Invertebrate	BPA batchA 0.001米收	9	9	embryo post 8 32hpf 0.001米收 BPA exposure	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	BPA-batch1-0.001.gz	fastq	107342639.0	1011191.0	BPA batchA 0.001.gz	0:106.15	A:25243607;C:28560404;G:28259900;T:25278728;N:0	106		25243607	28560404	28259900	25278728	0	SRX3058314	SRS2404190	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.95157		0.00018		0.97015		0.47508		97		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
43009	43009	SRR5892624	SRX3058313	SRS2404189	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	DMSO	breed:TU\|isolation source:lab\|collection date:2016 11 07\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:DMSO 1 batchA\|BioSampleModel:Invertebrate	DMSO batchF 1	76	76	embryo post 8 32hpf solvent control exposurereplication 1 in sixth batch	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	DMSO-batch6-1.gz	fastq	122524364.0	1140373.0	DMSO batchF 1.gz	0:107.44	A:29037400;C:32463628;G:32002009;T:29021327;N:0	107		29037400	32463628	32002009	29021327	0	SRX3058313	SRS2404189	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.93726		0.00028		0.96958		0.45888		94		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
43010	43010	SRR5892625	SRX3058312	SRS2404189	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	DMSO	breed:TU\|isolation source:lab\|collection date:2016 11 07\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:DMSO 1 batchA\|BioSampleModel:Invertebrate	DMSO batchD 1	70	70	embryo post 8 32hpf solvent control exposurereplication 1 in forth batch	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	DMSO-batch4-1.gz	fastq	74926719.0	693447.0	DMSO batchD 1.gz	0:108.05	A:17822945;C:19685470;G:19609716;T:17808588;N:0	108		17822945	19685470	19609716	17808588	0	SRX3058312	SRS2404189	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.93205		0.00032		0.97027		0.46463		90		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
43011	43011	SRR5892626	SRX3058311	SRS2404192	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	Eff2	breed:TU\|isolation source:lab\|collection date:2017 01 27\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:Eff2 REF DMSO 2\|BioSampleModel:Invertebrate	Eff2 DMSO 2	29	29	solvent control for Eff2 treatments replication 2	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	Eff2-DMSO-2.gz	fastq	130173677.0	1276939.0	Eff2 DMSO 2.gz	0:101.94	A:30800656;C:34461237;G:34302175;T:30609609;N:0	101		30800656	34461237	34302175	30609609	0	SRX3058311	SRS2404192	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.97312		0.00044		0.97102		0.46785		89		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
43012	43012	SRR5892627	SRX3058310	SRS2404192	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	Eff2	breed:TU\|isolation source:lab\|collection date:2017 01 27\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:Eff2 REF DMSO 2\|BioSampleModel:Invertebrate	Eff2 DMSO 3	30	30	solvent control for Eff2 treatments replication 3	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	Eff2-DMSO-3.gz	fastq	98823789.0	964906.0	Eff2 DMSO 3.gz	0:102.42	A:23307320;C:26100823;G:25991325;T:23424321;N:0	102		23307320	26100823	25991325	23424321	0	SRX3058310	SRS2404192	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.97592		0.00057		0.96976		0.47719		219		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
43013	43013	SRR5892628	SRX3058309	SRS2404190	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	BPA	breed:TU\|isolation source:lab\|collection date:2017 01 13\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:BPA 10 1 batchA\|BioSampleModel:Invertebrate	BPA batchA 0.0001米收	10	10	embryo post 8 32hpf 0.0001米收 BPA exposure	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	BPA-batch1-0.0001.gz	fastq	268069933.0	2570083.0	BPA batchA 0.0001.gz	0:104.30	A:62964064;C:71208232;G:70632425;T:63265212;N:0	104		62964064	71208232	70632425	63265212	0	SRX3058309	SRS2404190	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.95821		0.00028		0.97019		0.45389		55		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
43014	43014	SRR5892629	SRX3058308	SRS2404192	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	Eff2	breed:TU\|isolation source:lab\|collection date:2017 01 27\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:Eff2 REF DMSO 2\|BioSampleModel:Invertebrate	Eff2 REF0.4	23	23	embryo post 8 32hpf 0.4 REF Eff2 exposure	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	Eff2-REF0.4.gz	fastq	116602334.0	1111951.0	Eff2 REF0.4.gz	0:104.86	A:27578342;C:31122143;G:30463869;T:27437980;N:0	104		27578342	31122143	30463869	27437980	0	SRX3058308	SRS2404192	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.96298		0.00032		0.97086		0.47066		99		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
43015	43015	SRR5892630	SRX3058307	SRS2404192	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	Eff2	breed:TU\|isolation source:lab\|collection date:2017 01 27\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:Eff2 REF DMSO 2\|BioSampleModel:Invertebrate	Eff2 REF0.08	24	24	embryo post 8 32hpf 0.08 REF Eff2 exposure	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	Eff2-REF0.08.gz	fastq	117257335.0	1135362.0	Eff2 REF0.08.gz	0:103.28	A:27762486;C:30779147;G:30926101;T:27789601;N:0	103		27762486	30779147	30926101	27789601	0	SRX3058307	SRS2404192	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.96727		0.0003		0.97015		0.46445		99		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
43016	43016	SRR5892631	SRX3058306	SRS2404192	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	Eff2	breed:TU\|isolation source:lab\|collection date:2017 01 27\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:Eff2 REF DMSO 2\|BioSampleModel:Invertebrate	Eff2 REF10	21	21	embryo post 8 32hpf 10 REF Eff2 exposure	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	Eff2-REF10.gz	fastq	115465293.0	1111343.0	Eff2 REF10.gz	0:103.90	A:27473288;C:30244659;G:30506693;T:27240653;N:0	103		27473288	30244659	30506693	27240653	0	SRX3058306	SRS2404192	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.96992		0.00039		0.97051		0.47976		99		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
43017	43017	SRR5892632	SRX3058305	SRS2404192	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	Eff2	breed:TU\|isolation source:lab\|collection date:2017 01 27\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:Eff2 REF DMSO 2\|BioSampleModel:Invertebrate	Eff2 REF2	22	22	embryo post 8 32hpf 2 REF Eff2 exposure	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	Eff2-REF2.gz	fastq	120868058.0	1162567.0	Eff2 REF2.gz	0:103.97	A:28696636;C:32093659;G:31820629;T:28257134;N:0	103		28696636	32093659	31820629	28257134	0	SRX3058305	SRS2404192	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.97014		0.00042		0.97094		0.47389		182		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
43018	43018	SRR5892633	SRX3058304	SRS2404192	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	Eff2	breed:TU\|isolation source:lab\|collection date:2017 01 27\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:Eff2 REF DMSO 2\|BioSampleModel:Invertebrate	Eff2 REF0.00064	27	27	embryo post 8 32hpf 0.00064 REF Eff2 exposure	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	Eff2-REF0.00064.gz	fastq	139928274.0	1343610.0	Eff2 REF0.00064.gz	0:104.14	A:32900996;C:37559352;G:36386686;T:33081240;N:0	104		32900996	37559352	36386686	33081240	0	SRX3058304	SRS2404192	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.96704		0.00034		0.97068		0.46896		90		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
43019	43019	SRR5892634	SRX3058303	SRS2404192	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	Eff2	breed:TU\|isolation source:lab\|collection date:2017 01 27\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:Eff2 REF DMSO 2\|BioSampleModel:Invertebrate	Eff2 DMSO 1	28	28	solvent control for Eff2 treatments replication 1	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	Eff2-DMSO-1.gz	fastq	60761073.0	595809.0	Eff2 DMSO 1.gz	0:101.98	A:14285866;C:16118046;G:15995502;T:14361659;N:0	101		14285866	16118046	15995502	14361659	0	SRX3058303	SRS2404192	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.9804		0.00049		0.97053		0.45304		89		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
43020	43020	SRR5892635	SRX3058302	SRS2404192	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	Eff2	breed:TU\|isolation source:lab\|collection date:2017 01 27\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:Eff2 REF DMSO 2\|BioSampleModel:Invertebrate	Eff2 REF0.016	25	25	embryo post 8 32hpf 0.016 REF Eff2 exposure	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	Eff2-REF0.016.gz	fastq	150218876.0	1519616.0	Eff2 REF0.016.gz	0:98.85	A:35329654;C:39989538;G:39635993;T:35263691;N:0	98		35329654	39989538	39635993	35263691	0	SRX3058302	SRS2404192	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.978		0.00073		0.97116		0.45246		99		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
43021	43021	SRR5892636	SRX3058301	SRS2404192	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	Eff2	breed:TU\|isolation source:lab\|collection date:2017 01 27\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:Eff2 REF DMSO 2\|BioSampleModel:Invertebrate	Eff2 REF0.0032	26	26	embryo post 8 32hpf 0.0032 REF Eff2 exposure	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	Eff2-REF0.0032.gz	fastq	76364045.0	783876.0	Eff2 REF0.0032.gz	0:97.42	A:17887126;C:20254122;G:20251726;T:17971071;N:0	97		17887126	20254122	20251726	17971071	0	SRX3058301	SRS2404192	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.98075		0.00035		0.97153		0.42567		89		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
43022	43022	SRR5892637	SRX3058300	SRS2404193	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	DW	breed:TU\|isolation source:lab\|collection date:2017 01 27\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:DW REF DMSO 3\|BioSampleModel:Invertebrate	DW DMSO 2	49	49	solvent control for DW treatments replication 2	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	DW-DMSO-2.gz	fastq	98823789.0	964906.0	DW DMSO 2.gz	0:102.42	A:23307320;C:26100823;G:25991325;T:23424321;N:0	102		23307320	26100823	25991325	23424321	0	SRX3058300	SRS2404193	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.97592		0.00058		0.96974		0.47715		219		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
43023	43023	SRR5892638	SRX3058299	SRS2404193	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	DW	breed:TU\|isolation source:lab\|collection date:2017 01 27\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:DW REF DMSO 3\|BioSampleModel:Invertebrate	DW DMSO 3	50	50	solvent control for DW treatments replication 3	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	DW-DMSO-3.gz	fastq	98229102.0	950445.0	DW DMSO 3.gz	0:103.35	A:23324283;C:25872498;G:25849563;T:23182758;N:0	103		23324283	25872498	25849563	23182758	0	SRX3058299	SRS2404193	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.969		0.00029		0.97019		0.46904		89		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
43024	43024	SRR5892639	SRX3058298	SRS2404189	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	DMSO	breed:TU\|isolation source:lab\|collection date:2016 11 07\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:DMSO 1 batchA\|BioSampleModel:Invertebrate	DMSO batchB 2	65	65	embryo post 8 32hpf solvent control exposurereplication 2 in second batch	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	DMSO-batch2-2.gz	fastq	181332852.0	1769396.0	DMSO batchB 2.gz	0:102.48	A:43111149;C:47723124;G:47703716;T:42794863;N:0	102		43111149	47723124	47703716	42794863	0	SRX3058298	SRS2404189	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.96034		0.00047		0.96974		0.45533		196		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
43025	43025	SRR5892640	SRX3058297	SRS2404189	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	DMSO	breed:TU\|isolation source:lab\|collection date:2016 11 07\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:DMSO 1 batchA\|BioSampleModel:Invertebrate	DMSO batchB 3	66	66	embryo post 8 32hpf solvent control exposurereplication 3 in second batch	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	DMSO-batch2-3.gz	fastq	250009982.0	2396988.0	DMSO batchB 3.gz	0:104.30	A:59211578;C:66112203;G:65641188;T:59045013;N:0	104		59211578	66112203	65641188	59045013	0	SRX3058297	SRS2404189	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.95818		0.00057		0.96881		0.45554		99		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
43026	43026	SRR5892641	SRX3058296	SRS2404189	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	DMSO	breed:TU\|isolation source:lab\|collection date:2016 11 07\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:DMSO 1 batchA\|BioSampleModel:Invertebrate	DMSO batchA 3	63	63	embryo post 8 32hpf solvent control exposurereplication 3 in first batch	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	DMSO-batch1-3.gz	fastq	51761082.0	487084.0	DMSO batchA 3.gz	0:106.27	A:12262267;C:13621715;G:13587764;T:12289336;N:0	106		12262267	13621715	13587764	12289336	0	SRX3058296	SRS2404189	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.95092		0.0003		0.97017		0.46558		100		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
43027	43027	SRR5892642	SRX3058295	SRS2404189	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	DMSO	breed:TU\|isolation source:lab\|collection date:2016 11 07\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:DMSO 1 batchA\|BioSampleModel:Invertebrate	DMSO batchB 1	64	64	embryo post 8 32hpf solvent control exposurereplication 1 in second batch	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	DMSO-batch2-1.gz	fastq	137529705.0	1318658.0	DMSO batchB 1.gz	0:104.30	A:32525823;C:36223433;G:36304519;T:32475930;N:0	104		32525823	36223433	36304519	32475930	0	SRX3058295	SRS2404189	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.95767		0.00051		0.96978		0.45671		107		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
43028	43028	SRR5892643	SRX3058294	SRS2404189	SRP114766	PRJNA396480	Danio rerio Raw sequence reads	PRJNA396480	Other	A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test	DMSO	breed:TU\|isolation source:lab\|collection date:2016 11 07\|geo loc name:China\|tissue:embryos\|age:32hpf\|identified by:DMSO 1 batchA\|BioSampleModel:Invertebrate	DMSO batchA 1	61	61	embryo post 8 32hpf solvent control exposurereplication 1 in first batch	AMPLICON	TRANSCRIPTOMIC	PCR	SINGLE	ION_TORRENT	Ion Torrent Proton		SRP114766	DMSO-batch1-1.gz	fastq	54970926.0	518074.0	DMSO batchA 1.gz	0:106.11	A:13057581;C:14507897;G:14456016;T:12949432;N:0	106		13057581	14507897	14456016	12949432	0	SRX3058294	SRS2404189	SRA595054	Zebrafish embryo\|School of the environment	Zebrafish embryo	1	0.94528		0.00049		0.96932		0.46753		99		B		usable mapping rate	ion_torrent	ion_torrent	unknown	random_priming	unknown	bulk	unknown	unknown	Unknown	2017-08-03	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;