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run_metadata

8 rows where experiment.library_source = "METATRANSCRIPTOMIC" and experiment.platform = "DNBSEQ"

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tissue_curation_coarse 1

tissue_curation 1

technology 1

experiment.platform 1

  • DNBSEQ · 8 ✖

experiment.library_strategy 1

experiment.library_source 1

  • METATRANSCRIPTOMIC · 8 ✖

experiment.library_selection 1

experiment.library_layout 1

devstage_curation_coarse 1

devstage_curation 1

Link rowid ▼ run.accession experiment.accession sample.accession study.accession bioproject study.title study.alias study.type study.abstract study.attributes study.PMIDs sample.description sample.title sample.alias sample.centername sample.attributes GEOsample.title GEOsample.dataprocessing GEOsample.source GEOsample.treatmentprotocol GEOsample.extractprotocol GEOsample.growthprotocol GEOsample.characteristics GEOsample.accession experiment.title experiment.alias experiment.library_name experiment.design_description experiment.library_construction_protocol experiment.attributes experiment.library_strategy experiment.library_source experiment.library_selection experiment.library_layout experiment.platform experiment.instrument_model experiment.spot_descriptor experiment.study_ref run.title run.attributes run.filename run.semantic_name run.total_bases run.total_spots run.alias run.read_lengths run.base_counts run.r1_length run.r2_length run.r3_length run.r4_length run.Acount run.Ccount run.Gcount run.Tcount run.Ncount run.experiment run.pool_member submission.accession submission.srasource submission.bioprojectsource seqdetective.n_mates seqdetective.mapping_rate.mate1 seqdetective.mapping_rate.mate2 seqdetective.nofeature_rate.mate1 seqdetective.nofeature_rate.mate2 seqdetective.sparsity.mate1 seqdetective.sparsity.mate2 seqdetective.pos_strand_rate.mate1 seqdetective.pos_strand_rate.mate2 seqdetective.readlen.mate1 seqdetective.readlen.mate2 seqdetective.judgement.mate1 seqdetective.judgement.mate2 seqdetective.judgement.reason platform_family instrument_generation read_bias selection_class prep_kit sc_or_bulk tech_class technology tech_variant submission.bioprojectsource.country earliest_date devstage_curation devstage_curation_coarse tissue_curation tissue_curation_coarse
35452 35452 SRR32815440 SRX28098911 SRS24455832 SRP572346 PRJNA1240620 The mechanism of maternal inheritance of glycolipid metabolism disorder in a zebrafish model of type 2 diabetes PRJNA1240620 Other           T4Danio rerio   strain:T4|age:96hpf|collection date:2023 12 20|geo loc name:China: Xiangyang|sex:missing|tissue:Tissue of juvenile fish|replicate:T4|BioSampleModel:Model organism or animal                 T4 T4 T4 T4     RNA-Seq METATRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP572346     T4_1.fq.gz T4_2.fq.gz fastq fastq 6608651700.0 22028839.0 T4 1.fq.gz 0:150 1:150 A:1815401801;C:1489859310;G:1499379699;T:1804010890;N:0 150 150     1815401801 1489859310 1499379699 1804010890 0 SRX28098911 SRS24455832 SRA2098321 Wuhan University of Science and Technology|School of Medicine Wuhan University of Science and Technology                       B B biological fallback assumption bgi bgi unknown cdna_unspecified unknown bulk unknown unknown   China 2025-03-22 Larval Larval Undetermined Undetermined
35453 35453 SRR32815441 SRX28098910 SRS24455831 SRP572346 PRJNA1240620 The mechanism of maternal inheritance of glycolipid metabolism disorder in a zebrafish model of type 2 diabetes PRJNA1240620 Other           T3Danio rerio   strain:T3|age:96hpf|collection date:2023 12 20|geo loc name:China: Xiangyang|sex:missing|tissue:Tissue of juvenile fish|replicate:T3|BioSampleModel:Model organism or animal                 T3 T3 T3 T3     RNA-Seq METATRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP572346     T3_1.fq.gz T3_2.fq.gz fastq fastq 6656167200.0 22187224.0 T3 1.fq.gz 0:150 1:150 A:1840552276;C:1489247530;G:1499297584;T:1827069810;N:0 150 150     1840552276 1489247530 1499297584 1827069810 0 SRX28098910 SRS24455831 SRA2098321 Wuhan University of Science and Technology|School of Medicine Wuhan University of Science and Technology                       B B biological fallback assumption bgi bgi unknown cdna_unspecified unknown bulk unknown unknown   China 2025-03-22 Larval Larval Undetermined Undetermined
35454 35454 SRR32815442 SRX28098909 SRS24455830 SRP572346 PRJNA1240620 The mechanism of maternal inheritance of glycolipid metabolism disorder in a zebrafish model of type 2 diabetes PRJNA1240620 Other           T2Danio rerio   strain:T2|age:96hpf|collection date:2023 12 20|geo loc name:China: Xiangyang|sex:missing|tissue:Tissue of juvenile fish|replicate:T2|BioSampleModel:Model organism or animal                 T2 T2 T2 T2     RNA-Seq METATRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP572346     T2_1.fq.gz T2_2.fq.gz fastq fastq 6622204800.0 22074016.0 T2 1.fq.gz 0:150 1:150 A:1834396150;C:1480094606;G:1490046882;T:1817667162;N:0 150 150     1834396150 1480094606 1490046882 1817667162 0 SRX28098909 SRS24455830 SRA2098321 Wuhan University of Science and Technology|School of Medicine Wuhan University of Science and Technology                       B B biological fallback assumption bgi bgi unknown cdna_unspecified unknown bulk unknown unknown   China 2025-03-22 Larval Larval Undetermined Undetermined
35455 35455 SRR32815443 SRX28098908 SRS24455829 SRP572346 PRJNA1240620 The mechanism of maternal inheritance of glycolipid metabolism disorder in a zebrafish model of type 2 diabetes PRJNA1240620 Other           T1Danio rerio   strain:T1|age:96hpf|collection date:2023 12 20|geo loc name:China: Xiangyang|sex:missing|tissue:Tissue of juvenile fish|replicate:T1|BioSampleModel:Model organism or animal                 T1 T1 T1 T1     RNA-Seq METATRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP572346     T1_1.fq.gz T1_2.fq.gz fastq fastq 6626122500.0 22087075.0 T1 1.fq.gz 0:150 1:150 A:1833541012;C:1481665295;G:1491851279;T:1819064914;N:0 150 150     1833541012 1481665295 1491851279 1819064914 0 SRX28098908 SRS24455829 SRA2098321 Wuhan University of Science and Technology|School of Medicine Wuhan University of Science and Technology                       B B biological fallback assumption bgi bgi unknown cdna_unspecified unknown bulk unknown unknown   China 2025-03-22 Larval Larval Undetermined Undetermined
35456 35456 SRR32815444 SRX28098907 SRS24455828 SRP572346 PRJNA1240620 The mechanism of maternal inheritance of glycolipid metabolism disorder in a zebrafish model of type 2 diabetes PRJNA1240620 Other           Q4Danio rerio   strain:Q4|age:96hpf|collection date:2023 12 20|geo loc name:China: Xiangyang|sex:missing|tissue:Tissue of juvenile fish|replicate:Q4|BioSampleModel:Model organism or animal                 Q4 Q4 Q4 Q4     RNA-Seq METATRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP572346     Q4_1.fq.gz Q4_2.fq.gz fastq fastq 6646083600.0 22153612.0 Q4 1.fq.gz 0:150 1:150 A:1823086981;C:1499930776;G:1510718905;T:1812346938;N:0 150 150     1823086981 1499930776 1510718905 1812346938 0 SRX28098907 SRS24455828 SRA2098321 Wuhan University of Science and Technology|School of Medicine Wuhan University of Science and Technology                       B B biological fallback assumption bgi bgi unknown cdna_unspecified unknown bulk unknown unknown   China 2025-03-22 Larval Larval Undetermined Undetermined
35457 35457 SRR32815445 SRX28098906 SRS24455827 SRP572346 PRJNA1240620 The mechanism of maternal inheritance of glycolipid metabolism disorder in a zebrafish model of type 2 diabetes PRJNA1240620 Other           Q3Danio rerio   strain:Q3|age:96hpf|collection date:2023 12 20|geo loc name:China: Xiangyang|sex:missing|tissue:Tissue of juvenile fish|replicate:Q3|BioSampleModel:Model organism or animal                 Q3 Q3 Q3 Q3     RNA-Seq METATRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP572346     Q3_1.fq.gz Q3_2.fq.gz fastq fastq 6683275200.0 22277584.0 Q3 1.fq.gz 0:150 1:150 A:1838068171;C:1503920885;G:1514577234;T:1826708910;N:0 150 150     1838068171 1503920885 1514577234 1826708910 0 SRX28098906 SRS24455827 SRA2098321 Wuhan University of Science and Technology|School of Medicine Wuhan University of Science and Technology                       B B biological fallback assumption bgi bgi unknown cdna_unspecified unknown bulk unknown unknown   China 2025-03-22 Larval Larval Undetermined Undetermined
35458 35458 SRR32815446 SRX28098905 SRS24455826 SRP572346 PRJNA1240620 The mechanism of maternal inheritance of glycolipid metabolism disorder in a zebrafish model of type 2 diabetes PRJNA1240620 Other           Q2Danio rerio   strain:Q2|age:96hpf|collection date:2023 12 20|geo loc name:China: Xiangyang|sex:missing|tissue:Tissue of juvenile fish|replicate:Q2|BioSampleModel:Model organism or animal                 Q2 Q2 Q2 Q2     RNA-Seq METATRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP572346     Q2_1.fq.gz Q2_2.fq.gz fastq fastq 6612253800.0 22040846.0 Q2 1.fq.gz 0:150 1:150 A:1821750297;C:1484945478;G:1495582042;T:1809975983;N:0 150 150     1821750297 1484945478 1495582042 1809975983 0 SRX28098905 SRS24455826 SRA2098321 Wuhan University of Science and Technology|School of Medicine Wuhan University of Science and Technology                       B B biological fallback assumption bgi bgi unknown cdna_unspecified unknown bulk unknown unknown   China 2025-03-22 Larval Larval Undetermined Undetermined
35459 35459 SRR32815447 SRX28098904 SRS24455825 SRP572346 PRJNA1240620 The mechanism of maternal inheritance of glycolipid metabolism disorder in a zebrafish model of type 2 diabetes PRJNA1240620 Other           Q1Danio rerio   strain:Q1|age:96hpf|collection date:2023 12 20|geo loc name:China: Xiangyang|sex:missing|tissue:Tissue of juvenile fish|replicate:Q1|BioSampleModel:Model organism or animal                 Q1 Q1 Q1 Q1     RNA-Seq METATRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP572346     Q1_1.fq.gz Q1_2.fq.gz fastq fastq 6725919900.0 22419733.0 Q1 1.fq.gz 0:150 1:150 A:1845653740;C:1518697545;G:1530630124;T:1830938491;N:0 150 150     1845653740 1518697545 1530630124 1830938491 0 SRX28098904 SRS24455825 SRA2098321 Wuhan University of Science and Technology|School of Medicine Wuhan University of Science and Technology                       B B biological fallback assumption bgi bgi unknown cdna_unspecified unknown bulk unknown unknown   China 2025-03-22 Larval Larval Undetermined Undetermined

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;