metadata: run_metadata: 20 rows where experiment.library_selection = "other" and tissue_curation

20 rows where experiment.library_selection = "other" and tissue_curation_coarse = "Skeletal Element"

descending

Link	rowid ▼	run.accession	experiment.accession	sample.accession	study.accession	bioproject	study.title	study.alias	study.type	study.abstract	sample.alias	sample.attributes	experiment.title	experiment.alias	experiment.library_name	experiment.design_description	experiment.library_strategy	experiment.library_source	experiment.library_selection	experiment.library_layout	experiment.platform	experiment.instrument_model	experiment.study_ref	run.filename	run.semantic_name	run.total_bases	run.total_spots	run.alias	run.read_lengths	run.base_counts	run.r1_length	run.r2_length	run.Acount	run.Ccount	run.Gcount	run.Tcount	run.Ncount	run.experiment	run.pool_member	submission.accession	submission.srasource	submission.bioprojectsource	seqdetective.judgement.mate1	seqdetective.judgement.mate2	seqdetective.judgement.reason	platform_family	instrument_generation	read_bias	selection_class	prep_kit	sc_or_bulk	tech_class	technology	submission.bioprojectsource.country	earliest_date	devstage_curation	devstage_curation_coarse	tissue_curation	tissue_curation_coarse
30210	30210	SRR27722348	SRX23388314	SRS20249507	SRP485828	PRJNA1068830	skeletal toxicity studies of polystyrene nanoplastic in zebrafish	PRJNA1068830	Other	Employing standard polystyrene NPs as the representative the investigation of the bone loss in the caudal fin from environmentally realistic concentration of NPs was assessed in zebrafish.	2 F5 NPs	isolate:b1 F5\|host:male\|collection date:2022 09 06\|geo loc name:China:qingdao\|tissue:b1\|BioSampleModel:Invertebrate	skeletal toxicity studies of polystyrene nanoplastic in zebrafish	2 F5 NPs	2 F5 NPs	bone	RNA-Seq	TRANSCRIPTOMIC	other	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP485828	L1EGI0701134_L1EGI0701134--WT_M5.R1.raw.fastq.gz L1EGI0701134_L1EGI0701134--WT_M5.R2.raw.fastq.gz	fastq fastq	6858985646.0	22711873.0	L1EGI0701134 L1EGI0701134 WT M5.R1.raw.fastq.gz	0:151 1:151	A:1775374486;C:1607590004;G:1736749854;T:1739241353;N:29949	151	151	1775374486	1607590004	1736749854	1739241353	29949	SRX23388314	SRS20249507	SRA1791477	zhejiang university\|the college of animal science	zhejiang university	B	B	biological fallback assumption	illumina	hiseq_era	unknown	other	unknown	bulk	unknown	unknown	China	2024-01-25	Undetermined	Undetermined	Bone or Cartilage	Skeletal Element
30211	30211	SRR27722349	SRX23388313	SRS20249506	SRP485828	PRJNA1068830	skeletal toxicity studies of polystyrene nanoplastic in zebrafish	PRJNA1068830	Other	Employing standard polystyrene NPs as the representative the investigation of the bone loss in the caudal fin from environmentally realistic concentration of NPs was assessed in zebrafish.	2 F4 NPs	isolate:b1 F4\|host:male\|collection date:2022 09 06\|geo loc name:China:qingdao\|tissue:b1\|BioSampleModel:Invertebrate	skeletal toxicity studies of polystyrene nanoplastic in zebrafish	2 F4 NPs	2 F4 NPs	bone	RNA-Seq	TRANSCRIPTOMIC	other	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP485828	L1EGI0701133--WT_M4.R1.raw.fastq.gz L1EGI0701133--WT_M4.R2.raw.fastq.gz	fastq fastq	8367706978.0	27707639.0	L1EGI0701133 WT M4.R1.raw.fastq.gz	0:151 1:151	A:2190978299;C:1972956945;G:2068607164;T:2135130434;N:34136	151	151	2190978299	1972956945	2068607164	2135130434	34136	SRX23388313	SRS20249506	SRA1791477	zhejiang university\|the college of animal science	zhejiang university	B	B	biological fallback assumption	illumina	hiseq_era	unknown	other	unknown	bulk	unknown	unknown	China	2024-01-25	Undetermined	Undetermined	Bone or Cartilage	Skeletal Element
30212	30212	SRR27722350	SRX23388312	SRS20249505	SRP485828	PRJNA1068830	skeletal toxicity studies of polystyrene nanoplastic in zebrafish	PRJNA1068830	Other	Employing standard polystyrene NPs as the representative the investigation of the bone loss in the caudal fin from environmentally realistic concentration of NPs was assessed in zebrafish.	2 F3 NPs	isolate:b1 F3\|host:male\|collection date:2022 09 06\|geo loc name:China:qingdao\|tissue:b1\|BioSampleModel:Invertebrate	skeletal toxicity studies of polystyrene nanoplastic in zebrafish	2 F3 NPs	2 F3 NPs	bone	RNA-Seq	TRANSCRIPTOMIC	other	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP485828	L1EGI0701132--WT_M3.R1.raw.fastq.gz L1EGI0701132--WT_M3.R2.raw.fastq.gz	fastq fastq	8356526334.0	27670617.0	L1EGI0701132 WT M3.R1.raw.fastq.gz	0:151 1:151	A:2162579680;C:1984443655;G:2083109306;T:2126359754;N:33939	151	151	2162579680	1984443655	2083109306	2126359754	33939	SRX23388312	SRS20249505	SRA1791477	zhejiang university\|the college of animal science	zhejiang university	B	B	biological fallback assumption	illumina	hiseq_era	unknown	other	unknown	bulk	unknown	unknown	China	2024-01-25	Undetermined	Undetermined	Bone or Cartilage	Skeletal Element
30213	30213	SRR27722351	SRX23388311	SRS20249504	SRP485828	PRJNA1068830	skeletal toxicity studies of polystyrene nanoplastic in zebrafish	PRJNA1068830	Other	Employing standard polystyrene NPs as the representative the investigation of the bone loss in the caudal fin from environmentally realistic concentration of NPs was assessed in zebrafish.	2 F2 NPs	isolate:b1 F2\|host:male\|collection date:2022 09 06\|geo loc name:China:qingdao\|tissue:b1\|BioSampleModel:Invertebrate	skeletal toxicity studies of polystyrene nanoplastic in zebrafish	2 F2 NPs	2 F2 NPs	bone	RNA-Seq	TRANSCRIPTOMIC	other	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP485828	L1EGI0701131--WT_M2.R1.raw.fastq.gz L1EGI0701131--WT_M2.R2.raw.fastq.gz	fastq fastq	8143546874.0	26965387.0	L1EGI0701131 WT M2.R1.raw.fastq.gz	0:151 1:151	A:2114633540;C:1938964033;G:2015877300;T:2074038855;N:33146	151	151	2114633540	1938964033	2015877300	2074038855	33146	SRX23388311	SRS20249504	SRA1791477	zhejiang university\|the college of animal science	zhejiang university	B	B	biological fallback assumption	illumina	hiseq_era	unknown	other	unknown	bulk	unknown	unknown	China	2024-01-25	Undetermined	Undetermined	Bone or Cartilage	Skeletal Element
30214	30214	SRR27722352	SRX23388310	SRS20249503	SRP485828	PRJNA1068830	skeletal toxicity studies of polystyrene nanoplastic in zebrafish	PRJNA1068830	Other	Employing standard polystyrene NPs as the representative the investigation of the bone loss in the caudal fin from environmentally realistic concentration of NPs was assessed in zebrafish.	2 F1 NPs	isolate:b1 F1\|host:male\|collection date:2022 09 06\|geo loc name:China:qingdao\|tissue:b1\|BioSampleModel:Invertebrate	skeletal toxicity studies of polystyrene nanoplastic in zebrafish	2 F1 NPs	2 F1 NPs	bone	RNA-Seq	TRANSCRIPTOMIC	other	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP485828	L1EGI0701130--WT_M1.R1.raw.fastq.gz L1EGI0701130--WT_M1.R2.raw.fastq.gz	fastq fastq	9004594174.0	29816537.0	L1EGI0701130 WT M1.R1.raw.fastq.gz	0:151 1:151	A:2356139884;C:2114457727;G:2228436842;T:2305522562;N:37159	151	151	2356139884	2114457727	2228436842	2305522562	37159	SRX23388310	SRS20249503	SRA1791477	zhejiang university\|the college of animal science	zhejiang university	B	B	biological fallback assumption	illumina	hiseq_era	unknown	other	unknown	bulk	unknown	unknown	China	2024-01-25	Undetermined	Undetermined	Bone or Cartilage	Skeletal Element
30215	30215	SRR27722353	SRX23388309	SRS20249502	SRP485828	PRJNA1068830	skeletal toxicity studies of polystyrene nanoplastic in zebrafish	PRJNA1068830	Other	Employing standard polystyrene NPs as the representative the investigation of the bone loss in the caudal fin from environmentally realistic concentration of NPs was assessed in zebrafish.	1 F5 WT	isolate:b1 F5\|host:female\|collection date:2022 09 06\|geo loc name:China:qingdao\|tissue:b1\|BioSampleModel:Invertebrate	skeletal toxicity studies of polystyrene nanoplastic in zebrafish	1 F5 WT	1 F5 WT	bone	RNA-Seq	TRANSCRIPTOMIC	other	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP485828	L1EGI0701128--WT_F5.R1.raw.fastq.gz L1EGI0701128--WT_F5.R2.raw.fastq.gz	fastq fastq	9595399794.0	31772847.0	L1EGI0701128 WT F5.R1.raw.fastq.gz	0:151 1:151	A:2471647902;C:2293433569;G:2400056012;T:2430223486;N:38825	151	151	2471647902	2293433569	2400056012	2430223486	38825	SRX23388309	SRS20249502	SRA1791477	zhejiang university\|the college of animal science	zhejiang university	B	B	biological fallback assumption	illumina	hiseq_era	unknown	other	unknown	bulk	unknown	unknown	China	2024-01-25	Undetermined	Undetermined	Bone or Cartilage	Skeletal Element
30216	30216	SRR27722354	SRX23388308	SRS20249501	SRP485828	PRJNA1068830	skeletal toxicity studies of polystyrene nanoplastic in zebrafish	PRJNA1068830	Other	Employing standard polystyrene NPs as the representative the investigation of the bone loss in the caudal fin from environmentally realistic concentration of NPs was assessed in zebrafish.	1 F4 WT	isolate:b1 F4\|host:female\|collection date:2022 09 06\|geo loc name:China:qingdao\|tissue:b1\|BioSampleModel:Invertebrate	skeletal toxicity studies of polystyrene nanoplastic in zebrafish	1 F4 WT	1 F4 WT	bone	RNA-Seq	TRANSCRIPTOMIC	other	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP485828	L1EGI0701127--WT_F4.R1.raw.fastq.gz L1EGI0701127--WT_F4.R2.raw.fastq.gz	fastq fastq	7628679456.0	25260528.0	L1EGI0701127 WT F4.R1.raw.fastq.gz	0:151 1:151	A:2006324404;C:1789150133;G:1873940582;T:1959232617;N:31720	151	151	2006324404	1789150133	1873940582	1959232617	31720	SRX23388308	SRS20249501	SRA1791477	zhejiang university\|the college of animal science	zhejiang university	B	B	biological fallback assumption	illumina	hiseq_era	unknown	other	unknown	bulk	unknown	unknown	China	2024-01-25	Undetermined	Undetermined	Bone or Cartilage	Skeletal Element
30217	30217	SRR27722355	SRX23388307	SRS20249500	SRP485828	PRJNA1068830	skeletal toxicity studies of polystyrene nanoplastic in zebrafish	PRJNA1068830	Other	Employing standard polystyrene NPs as the representative the investigation of the bone loss in the caudal fin from environmentally realistic concentration of NPs was assessed in zebrafish.	1 F3 WT	isolate:b1 F3\|host:female\|collection date:2022 09 06\|geo loc name:China:qingdao\|tissue:b1\|BioSampleModel:Invertebrate	skeletal toxicity studies of polystyrene nanoplastic in zebrafish	1 F3 WT	1 F3 WT	bone	RNA-Seq	TRANSCRIPTOMIC	other	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP485828	L1EGI0701126--WT_F3.R1.raw.fastq.gz L1EGI0701126--WT_F3.R2.raw.fastq.gz	fastq fastq	8853107954.0	29314927.0	L1EGI0701126 WT F3.R1.raw.fastq.gz	0:151 1:151	A:2281668777;C:2122390553;G:2205818678;T:2243193679;N:36267	151	151	2281668777	2122390553	2205818678	2243193679	36267	SRX23388307	SRS20249500	SRA1791477	zhejiang university\|the college of animal science	zhejiang university	B	B	biological fallback assumption	illumina	hiseq_era	unknown	other	unknown	bulk	unknown	unknown	China	2024-01-25	Undetermined	Undetermined	Bone or Cartilage	Skeletal Element
30218	30218	SRR27722356	SRX23388306	SRS20249499	SRP485828	PRJNA1068830	skeletal toxicity studies of polystyrene nanoplastic in zebrafish	PRJNA1068830	Other	Employing standard polystyrene NPs as the representative the investigation of the bone loss in the caudal fin from environmentally realistic concentration of NPs was assessed in zebrafish.	4 M5 NPs	isolate:b1 M5\|host:male\|collection date:2022 09 06\|geo loc name:China:qingdao\|tissue:b1\|BioSampleModel:Invertebrate	skeletal toxicity studies of polystyrene nanoplastic in zebrafish	4 M5 NPs	4 M5 NPs	bone	RNA-Seq	TRANSCRIPTOMIC	other	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP485828	L1EGI0701146--NPs_M5.R1.raw.fastq.gz L1EGI0701146--NPs_M5.R2.raw.fastq.gz	fastq fastq	7440341686.0	24636893.0	L1EGI0701146 NPs M5.R1.raw.fastq.gz	0:151 1:151	A:1926837197;C:1774447312;G:1865805171;T:1873221668;N:30338	151	151	1926837197	1774447312	1865805171	1873221668	30338	SRX23388306	SRS20249499	SRA1791477	zhejiang university\|the college of animal science	zhejiang university	B	B	biological fallback assumption	illumina	hiseq_era	unknown	other	unknown	bulk	unknown	unknown	China	2024-01-25	Undetermined	Undetermined	Bone or Cartilage	Skeletal Element
30219	30219	SRR27722357	SRX23388305	SRS20249498	SRP485828	PRJNA1068830	skeletal toxicity studies of polystyrene nanoplastic in zebrafish	PRJNA1068830	Other	Employing standard polystyrene NPs as the representative the investigation of the bone loss in the caudal fin from environmentally realistic concentration of NPs was assessed in zebrafish.	4 M4 NPs	isolate:b1 M4\|host:male\|collection date:2022 09 06\|geo loc name:China:qingdao\|tissue:b1\|BioSampleModel:Invertebrate	skeletal toxicity studies of polystyrene nanoplastic in zebrafish	4 M4 NPs	4 M4 NPs	bone	RNA-Seq	TRANSCRIPTOMIC	other	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP485828	L1EGI0701145_L1EGI0701145--NPs_M4.R1.raw.fastq.gz L1EGI0701145_L1EGI0701145--NPs_M4.R2.raw.fastq.gz	fastq fastq	7482324518.0	24775909.0	L1EGI0701145 L1EGI0701145 NPs M4.R1.raw.fastq.gz	0:151 1:151	A:2074937139;C:1646093888;G:1749156387;T:2012102736;N:34368	151	151	2074937139	1646093888	1749156387	2012102736	34368	SRX23388305	SRS20249498	SRA1791477	zhejiang university\|the college of animal science	zhejiang university	B	B	biological fallback assumption	illumina	hiseq_era	unknown	other	unknown	bulk	unknown	unknown	China	2024-01-25	Undetermined	Undetermined	Bone or Cartilage	Skeletal Element
30220	30220	SRR27722358	SRX23388304	SRS20249497	SRP485828	PRJNA1068830	skeletal toxicity studies of polystyrene nanoplastic in zebrafish	PRJNA1068830	Other	Employing standard polystyrene NPs as the representative the investigation of the bone loss in the caudal fin from environmentally realistic concentration of NPs was assessed in zebrafish.	4 M3 NPs	isolate:b1 M3\|host:male\|collection date:2022 09 06\|geo loc name:China:qingdao\|tissue:b1\|BioSampleModel:Invertebrate	skeletal toxicity studies of polystyrene nanoplastic in zebrafish	4 M3 NPs	4 M3 NPs	bone	RNA-Seq	TRANSCRIPTOMIC	other	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP485828	L1EGI0701144--NPs_M3.R1.raw.fastq.gz L1EGI0701144--NPs_M3.R2.raw.fastq.gz	fastq fastq	8439432280.0	27945140.0	L1EGI0701144 NPs M3.R1.raw.fastq.gz	0:151 1:151	A:2168219326;C:2022693060;G:2132822366;T:2115662612;N:34916	151	151	2168219326	2022693060	2132822366	2115662612	34916	SRX23388304	SRS20249497	SRA1791477	zhejiang university\|the college of animal science	zhejiang university	B	B	biological fallback assumption	illumina	hiseq_era	unknown	other	unknown	bulk	unknown	unknown	China	2024-01-25	Undetermined	Undetermined	Bone or Cartilage	Skeletal Element
30221	30221	SRR27722359	SRX23388303	SRS20249496	SRP485828	PRJNA1068830	skeletal toxicity studies of polystyrene nanoplastic in zebrafish	PRJNA1068830	Other	Employing standard polystyrene NPs as the representative the investigation of the bone loss in the caudal fin from environmentally realistic concentration of NPs was assessed in zebrafish.	4 M2 NPs	isolate:b1 M2\|host:male\|collection date:2022 09 06\|geo loc name:China:qingdao\|tissue:b1\|BioSampleModel:Invertebrate	skeletal toxicity studies of polystyrene nanoplastic in zebrafish	4 M2 NPs	4 M2 NPs	bone	RNA-Seq	TRANSCRIPTOMIC	other	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP485828	L1EGI0701143--NPs_M2.R1.raw.fastq.gz L1EGI0701143--NPs_M2.R2.raw.fastq.gz	fastq fastq	7033808614.0	23290757.0	L1EGI0701143 NPs M2.R1.raw.fastq.gz	0:151 1:151	A:1828789906;C:1675914023;G:1760006026;T:1769068832;N:29827	151	151	1828789906	1675914023	1760006026	1769068832	29827	SRX23388303	SRS20249496	SRA1791477	zhejiang university\|the college of animal science	zhejiang university	B	B	biological fallback assumption	illumina	hiseq_era	unknown	other	unknown	bulk	unknown	unknown	China	2024-01-25	Undetermined	Undetermined	Bone or Cartilage	Skeletal Element
30222	30222	SRR27722360	SRX23388302	SRS20249495	SRP485828	PRJNA1068830	skeletal toxicity studies of polystyrene nanoplastic in zebrafish	PRJNA1068830	Other	Employing standard polystyrene NPs as the representative the investigation of the bone loss in the caudal fin from environmentally realistic concentration of NPs was assessed in zebrafish.	4 M1 NPs	isolate:b1 M1\|host:male\|collection date:2022 09 06\|geo loc name:China:qingdao\|tissue:b1\|BioSampleModel:Invertebrate	skeletal toxicity studies of polystyrene nanoplastic in zebrafish	4 M1 NPs	4 M1 NPs	bone	RNA-Seq	TRANSCRIPTOMIC	other	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP485828	L1EGI0701142--NPs_M1.R1.raw.fastq.gz L1EGI0701142--NPs_M1.R2.raw.fastq.gz	fastq fastq	8087463964.0	26779682.0	L1EGI0701142 NPs M1.R1.raw.fastq.gz	0:151 1:151	A:2097695704;C:1931279917;G:2029894750;T:2028560473;N:33120	151	151	2097695704	1931279917	2029894750	2028560473	33120	SRX23388302	SRS20249495	SRA1791477	zhejiang university\|the college of animal science	zhejiang university	B	B	biological fallback assumption	illumina	hiseq_era	unknown	other	unknown	bulk	unknown	unknown	China	2024-01-25	Undetermined	Undetermined	Bone or Cartilage	Skeletal Element
30223	30223	SRR27722361	SRX23388301	SRS20249494	SRP485828	PRJNA1068830	skeletal toxicity studies of polystyrene nanoplastic in zebrafish	PRJNA1068830	Other	Employing standard polystyrene NPs as the representative the investigation of the bone loss in the caudal fin from environmentally realistic concentration of NPs was assessed in zebrafish.	3 M5 WT	isolate:b1 M5\|host:female\|collection date:2022 09 06\|geo loc name:China:qingdao\|tissue:b1\|BioSampleModel:Invertebrate	skeletal toxicity studies of polystyrene nanoplastic in zebrafish	3 M5 WT	3 M5 WT	bone	RNA-Seq	TRANSCRIPTOMIC	other	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP485828	L1EGI0701140--NPs_F5.R1.raw.fastq.gz L1EGI0701140--NPs_F5.R2.raw.fastq.gz	fastq fastq	8478344376.0	28073988.0	L1EGI0701140 NPs F5.R1.raw.fastq.gz	0:151 1:151	A:2202734913;C:2015133130;G:2106431143;T:2154009977;N:35213	151	151	2202734913	2015133130	2106431143	2154009977	35213	SRX23388301	SRS20249494	SRA1791477	zhejiang university\|the college of animal science	zhejiang university	B	B	biological fallback assumption	illumina	hiseq_era	unknown	other	unknown	bulk	unknown	unknown	China	2024-01-25	Undetermined	Undetermined	Bone or Cartilage	Skeletal Element
30224	30224	SRR27722362	SRX23388300	SRS20249493	SRP485828	PRJNA1068830	skeletal toxicity studies of polystyrene nanoplastic in zebrafish	PRJNA1068830	Other	Employing standard polystyrene NPs as the representative the investigation of the bone loss in the caudal fin from environmentally realistic concentration of NPs was assessed in zebrafish.	3 M4 WT	isolate:b1 M4\|host:female\|collection date:2022 09 06\|geo loc name:China:qingdao\|tissue:b1\|BioSampleModel:Invertebrate	skeletal toxicity studies of polystyrene nanoplastic in zebrafish	3 M4 WT	3 M4 WT	bone	RNA-Seq	TRANSCRIPTOMIC	other	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP485828	L1EGI0701139--NPs_F4.R1.raw.fastq.gz L1EGI0701139--NPs_F4.R2.raw.fastq.gz	fastq fastq	8569883596.0	28377098.0	L1EGI0701139 NPs F4.R1.raw.fastq.gz	0:151 1:151	A:2215047248;C:2038336388;G:2145335785;T:2171128844;N:35331	151	151	2215047248	2038336388	2145335785	2171128844	35331	SRX23388300	SRS20249493	SRA1791477	zhejiang university\|the college of animal science	zhejiang university	B	B	biological fallback assumption	illumina	hiseq_era	unknown	other	unknown	bulk	unknown	unknown	China	2024-01-25	Undetermined	Undetermined	Bone or Cartilage	Skeletal Element
30225	30225	SRR27722363	SRX23388299	SRS20249492	SRP485828	PRJNA1068830	skeletal toxicity studies of polystyrene nanoplastic in zebrafish	PRJNA1068830	Other	Employing standard polystyrene NPs as the representative the investigation of the bone loss in the caudal fin from environmentally realistic concentration of NPs was assessed in zebrafish.	3 M3 WT	isolate:b1 M3\|host:female\|collection date:2022 09 06\|geo loc name:China:qingdao\|tissue:b1\|BioSampleModel:Invertebrate	skeletal toxicity studies of polystyrene nanoplastic in zebrafish	3 M3 WT	3 M3 WT	bone	RNA-Seq	TRANSCRIPTOMIC	other	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP485828	L1EGI0701138--NPs_F3.R1.raw.fastq.gz L1EGI0701138--NPs_F3.R2.raw.fastq.gz	fastq fastq	7930364168.0	26259484.0	L1EGI0701138 NPs F3.R1.raw.fastq.gz	0:151 1:151	A:2046759305;C:1898600276;G:1959125241;T:2025847086;N:32260	151	151	2046759305	1898600276	1959125241	2025847086	32260	SRX23388299	SRS20249492	SRA1791477	zhejiang university\|the college of animal science	zhejiang university	B	B	biological fallback assumption	illumina	hiseq_era	unknown	other	unknown	bulk	unknown	unknown	China	2024-01-25	Undetermined	Undetermined	Bone or Cartilage	Skeletal Element
30226	30226	SRR27722364	SRX23388298	SRS20249491	SRP485828	PRJNA1068830	skeletal toxicity studies of polystyrene nanoplastic in zebrafish	PRJNA1068830	Other	Employing standard polystyrene NPs as the representative the investigation of the bone loss in the caudal fin from environmentally realistic concentration of NPs was assessed in zebrafish.	3 M2 WT	isolate:b1 M2\|host:female\|collection date:2022 09 06\|geo loc name:China:qingdao\|tissue:b1\|BioSampleModel:Invertebrate	skeletal toxicity studies of polystyrene nanoplastic in zebrafish	3 M2 WT	3 M2 WT	bone	RNA-Seq	TRANSCRIPTOMIC	other	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP485828	L1EGI0701137--NPs_F2.R1.raw.fastq.gz L1EGI0701137--NPs_F2.R2.raw.fastq.gz	fastq fastq	6914965272.0	22897236.0	L1EGI0701137 NPs F2.R1.raw.fastq.gz	0:151 1:151	A:1789644342;C:1644676301;G:1738643678;T:1741972870;N:28081	151	151	1789644342	1644676301	1738643678	1741972870	28081	SRX23388298	SRS20249491	SRA1791477	zhejiang university\|the college of animal science	zhejiang university	B	B	biological fallback assumption	illumina	hiseq_era	unknown	other	unknown	bulk	unknown	unknown	China	2024-01-25	Undetermined	Undetermined	Bone or Cartilage	Skeletal Element
30227	30227	SRR27722365	SRX23388297	SRS20249490	SRP485828	PRJNA1068830	skeletal toxicity studies of polystyrene nanoplastic in zebrafish	PRJNA1068830	Other	Employing standard polystyrene NPs as the representative the investigation of the bone loss in the caudal fin from environmentally realistic concentration of NPs was assessed in zebrafish.	3 M1 WT	isolate:b1 M1\|host:female\|collection date:2022 09 06\|geo loc name:China:qingdao\|tissue:b1\|BioSampleModel:Invertebrate	skeletal toxicity studies of polystyrene nanoplastic in zebrafish	3 M1 WT	3 M1 WT	bone	RNA-Seq	TRANSCRIPTOMIC	other	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP485828	L1EGI0701136--NPs_F1.R1.raw.fastq.gz L1EGI0701136--NPs_F1.R2.raw.fastq.gz	fastq fastq	7957071840.0	26347920.0	L1EGI0701136 NPs F1.R1.raw.fastq.gz	0:151 1:151	A:2056500264;C:1899503313;G:1979706436;T:2021329536;N:32291	151	151	2056500264	1899503313	1979706436	2021329536	32291	SRX23388297	SRS20249490	SRA1791477	zhejiang university\|the college of animal science	zhejiang university	B	B	biological fallback assumption	illumina	hiseq_era	unknown	other	unknown	bulk	unknown	unknown	China	2024-01-25	Undetermined	Undetermined	Bone or Cartilage	Skeletal Element
30228	30228	SRR27722366	SRX23388296	SRS20249489	SRP485828	PRJNA1068830	skeletal toxicity studies of polystyrene nanoplastic in zebrafish	PRJNA1068830	Other	Employing standard polystyrene NPs as the representative the investigation of the bone loss in the caudal fin from environmentally realistic concentration of NPs was assessed in zebrafish.	1 F2 WT	isolate:b1 F2\|host:female\|collection date:2022 09 06\|geo loc name:China:qingdao\|tissue:b1\|BioSampleModel:Invertebrate	skeletal toxicity studies of polystyrene nanoplastic in zebrafish	1 F2 WT	1 F2 WT	bone	RNA-Seq	TRANSCRIPTOMIC	other	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP485828	L1EGI0701125--WT_F2.R1.raw.fastq.gz L1EGI0701125--WT_F2.R2.raw.fastq.gz	fastq fastq	7960683760.0	26359880.0	L1EGI0701125 WT F2.R1.raw.fastq.gz	0:151 1:151	A:2087534093;C:1862286963;G:1962292721;T:2048536454;N:33529	151	151	2087534093	1862286963	1962292721	2048536454	33529	SRX23388296	SRS20249489	SRA1791477	zhejiang university\|the college of animal science	zhejiang university	B	B	biological fallback assumption	illumina	hiseq_era	unknown	other	unknown	bulk	unknown	unknown	China	2024-01-25	Undetermined	Undetermined	Bone or Cartilage	Skeletal Element
30229	30229	SRR27722367	SRX23388295	SRS20249488	SRP485828	PRJNA1068830	skeletal toxicity studies of polystyrene nanoplastic in zebrafish	PRJNA1068830	Other	Employing standard polystyrene NPs as the representative the investigation of the bone loss in the caudal fin from environmentally realistic concentration of NPs was assessed in zebrafish.	1 F1 WT	isolate:b1 F1\|host:female\|collection date:2022 09 06\|geo loc name:China:qingdao\|tissue:b1\|BioSampleModel:Invertebrate	skeletal toxicity studies of polystyrene nanoplastic in zebrafish	1 F1 WT	1 F1 WT	bone	RNA-Seq	TRANSCRIPTOMIC	other	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP485828	L1EGI0701124--WT_F1.R1.raw.fastq.gz L1EGI0701124--WT_F1.R2.raw.fastq.gz	fastq fastq	8373285522.0	27726111.0	L1EGI0701124 WT F1.R1.raw.fastq.gz	0:151 1:151	A:2148645285;C:1996284185;G:2121066399;T:2107255525;N:34128	151	151	2148645285	1996284185	2121066399	2107255525	34128	SRX23388295	SRS20249488	SRA1791477	zhejiang university\|the college of animal science	zhejiang university	B	B	biological fallback assumption	illumina	hiseq_era	unknown	other	unknown	bulk	unknown	unknown	China	2024-01-25	Undetermined	Undetermined	Bone or Cartilage	Skeletal Element

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;