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34 rows where experiment.library_selection = "other", experiment.library_source = "TRANSCRIPTOMIC" and tissue_curation = "Liver"

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tissue_curation_coarse 1

tissue_curation 1

  • Liver · 34 ✖

technology 1

experiment.platform 1

experiment.library_strategy 1

experiment.library_source 1

  • TRANSCRIPTOMIC · 34 ✖

experiment.library_selection 1

  • other · 34 ✖

experiment.library_layout 1

devstage_curation_coarse 1

devstage_curation 1

Link rowid ▼ run.accession experiment.accession sample.accession study.accession bioproject study.title study.alias study.type study.abstract study.attributes study.PMIDs sample.description sample.title sample.alias sample.centername sample.attributes GEOsample.title GEOsample.dataprocessing GEOsample.source GEOsample.treatmentprotocol GEOsample.extractprotocol GEOsample.growthprotocol GEOsample.characteristics GEOsample.accession experiment.title experiment.alias experiment.library_name experiment.design_description experiment.library_construction_protocol experiment.attributes experiment.library_strategy experiment.library_source experiment.library_selection experiment.library_layout experiment.platform experiment.instrument_model experiment.spot_descriptor experiment.study_ref run.title run.attributes run.filename run.semantic_name run.total_bases run.total_spots run.alias run.read_lengths run.base_counts run.r1_length run.r2_length run.r3_length run.r4_length run.Acount run.Ccount run.Gcount run.Tcount run.Ncount run.experiment run.pool_member submission.accession submission.srasource submission.bioprojectsource seqdetective.n_mates seqdetective.mapping_rate.mate1 seqdetective.mapping_rate.mate2 seqdetective.nofeature_rate.mate1 seqdetective.nofeature_rate.mate2 seqdetective.sparsity.mate1 seqdetective.sparsity.mate2 seqdetective.pos_strand_rate.mate1 seqdetective.pos_strand_rate.mate2 seqdetective.readlen.mate1 seqdetective.readlen.mate2 seqdetective.judgement.mate1 seqdetective.judgement.mate2 seqdetective.judgement.reason platform_family instrument_generation read_bias selection_class prep_kit sc_or_bulk tech_class technology tech_variant submission.bioprojectsource.country earliest_date devstage_curation devstage_curation_coarse tissue_curation tissue_curation_coarse
32702 32702 SRR29406586 SRX24920069 SRS21625731 SRP513845 PRJNA1123436 Transcriptome analysis of liver tissue of zebrafish PRJNA1123436 Other We studied transcriptomic changes in the liver of zebrafish exposed to a certain concentration of tire wear particles.     Large particle sizes exposed a third parallel group for xxx days 10 5L LTTC 5L   isolate:zebrafish|breed:Wild type|age:3 months|collection date:2024 01 11|geo loc name:China:Qingdao|sex:missing|tissue:liver|isolation source:not applicable|lat lon:not collected|replicate:biological replicate 3|BioSampleModel:Model organism or animal                 RNA Seq in Danio rerio: adult liver LTTC 5L LTTC 5L normal RNA Seq nodules     RNA-Seq TRANSCRIPTOMIC other PAIRED ILLUMINA Illumina NovaSeq 6000   SRP513845     LTTC-5L.R1.fq.gz LTTC-5L.R2.fq.gz fastq fastq 6265390800.0 20884636.0 LTTC 5L.R1.fq.gz 0:150 1:150 A:1628878121;C:1478980071;G:1531718314;T:1625563995;N:250299 150 150     1628878121 1478980071 1531718314 1625563995 250299 SRX24920069 SRS21625731 SRA1897556 Qingdao University of Science and technology|College of marine science and biological engineeri Qingdao University of Science and technology 2 0.93046 0.93252 0.01649 0.01652 0.8632 0.86419 0.19989 0.20506 150 150 B B biological fallback assumption illumina novaseq_era unknown other unknown bulk unknown unknown   China 2024-06-13 Adult Adult Liver Liver and Biliary System
32703 32703 SRR29406587 SRX24920068 SRS21625730 SRP513845 PRJNA1123436 Transcriptome analysis of liver tissue of zebrafish PRJNA1123436 Other We studied transcriptomic changes in the liver of zebrafish exposed to a certain concentration of tire wear particles.     Large particle sizes exposed a second parallel group for xxx days 10 3L LTTB 3L   isolate:zebrafish|breed:Wild type|age:3 months|collection date:2024 01 11|geo loc name:China:Qingdao|sex:missing|tissue:liver|isolation source:not applicable|lat lon:not collected|replicate:biological replicate 2|BioSampleModel:Model organism or animal                 RNA Seq in Danio rerio: adult liver LTTB 3L LTTB 3L normal RNA Seq nodules     RNA-Seq TRANSCRIPTOMIC other PAIRED ILLUMINA Illumina NovaSeq 6000   SRP513845     LTTB-3L.R1.fq.gz LTTB-3L.R2.fq.gz fastq fastq 7071567300.0 23571891.0 LTTB 3L.R1.fq.gz 0:150 1:150 A:1850920547;C:1627561757;G:1724635580;T:1868173521;N:275895 150 150     1850920547 1627561757 1724635580 1868173521 275895 SRX24920068 SRS21625730 SRA1897556 Qingdao University of Science and technology|College of marine science and biological engineeri Qingdao University of Science and technology 2 0.91316 0.91593 0.04446 0.04477 0.80008 0.80048 0.57977 0.58057 150 150 B B biological fallback assumption illumina novaseq_era unknown other unknown bulk unknown unknown   China 2024-06-13 Adult Adult Liver Liver and Biliary System
56981 56981 SRR11196600 SRX7816555 SRS6227602 SRP251016 PRJNA609258 Liver of zebrafish transcriptome analysis PRJNA609258 Other In order to study the effect of elovl6 on glucose and lipid metabolism in zebrafish we performed transcriptome analysis on wild type and elovl6 knock out zebrafish liver and screened for differential genes and performed corresponding functional analysis.         6AC 3   breed:AB|age:3 months|sex:male|tissue:liver|genotype:elovl6 / |sample type:tissue sample|replicate:Biosample replicate 3|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish: adult male liver 6AC 3 6AC 3 tissue sample     RNA-Seq TRANSCRIPTOMIC other PAIRED ILLUMINA Illumina HiSeq 4000   SRP251016     6AC_3_data1_B0908nova1_R1_001.fastq.gz 6AC_3_data0_B0908nova1_R2_001.fastq.gz fastq fastq 7579772972.0 25098586.0 6AC 3 data0 B0908nova1 R2 001.fastq.gz 0:151 1:151 A:1965943396;C:1801143369;G:1839146522;T:1973408539;N:131146 151 151     1965943396 1801143369 1839146522 1973408539 131146 SRX7816555 SRS6227602 SRA1049075 Huazhong Agricultural University|Fisheries Huazhong Agricultural University 2 0.94351 0.94383 0.03348 0.03324 0.81195 0.81103 0.59626 0.59009 151 151 B B biological fallback assumption illumina hiseq_era unknown other unknown bulk unknown unknown   China 2020-02-28 Adult Adult Liver Liver and Biliary System
56982 56982 SRR11196601 SRX7816554 SRS6227601 SRP251016 PRJNA609258 Liver of zebrafish transcriptome analysis PRJNA609258 Other In order to study the effect of elovl6 on glucose and lipid metabolism in zebrafish we performed transcriptome analysis on wild type and elovl6 knock out zebrafish liver and screened for differential genes and performed corresponding functional analysis.         6AC 2   breed:AB|age:3 months|sex:male|tissue:liver|genotype:elovl6 / |sample type:tissue sample|replicate:Biosample replicate 2|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish: adult male liver 6AC 2 6AC 2 tissue sample     RNA-Seq TRANSCRIPTOMIC other PAIRED ILLUMINA Illumina HiSeq 4000   SRP251016     6AC_2_data1_B0908nova1_R1_001.fastq.gz 6AC_2_data0_B0908nova1_R2_001.fastq.gz fastq fastq 7903695152.0 26171176.0 6AC 2 data0 B0908nova1 R2 001.fastq.gz 0:151 1:151 A:2045241198;C:1886876831;G:1927059046;T:2044382171;N:135906 151 151     2045241198 1886876831 1927059046 2044382171 135906 SRX7816554 SRS6227601 SRA1049075 Huazhong Agricultural University|Fisheries Huazhong Agricultural University 2 0.95115 0.9418 0.02989 0.02932 0.82706 0.82834 0.57855 0.60377 151 151 B B biological fallback assumption illumina hiseq_era unknown other unknown bulk unknown unknown   China 2020-02-28 Adult Adult Liver Liver and Biliary System
56983 56983 SRR11196602 SRX7816553 SRS6227600 SRP251016 PRJNA609258 Liver of zebrafish transcriptome analysis PRJNA609258 Other In order to study the effect of elovl6 on glucose and lipid metabolism in zebrafish we performed transcriptome analysis on wild type and elovl6 knock out zebrafish liver and screened for differential genes and performed corresponding functional analysis.         6AC 1   breed:AB|age:3 months|sex:male|tissue:liver|genotype:elovl6 / |sample type:tissue sample|replicate:Biosample replicate 1|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish: adult male liver 6AC 1 6AC 1 tissue sample     RNA-Seq TRANSCRIPTOMIC other PAIRED ILLUMINA Illumina HiSeq 4000   SRP251016     6AC_1_data0_B0908nova1_R2_001.fastq.gz 6AC_1_data1_B0908nova1_R1_001.fastq.gz fastq fastq 7131436456.0 23614028.0 6AC 1 data0 B0908nova1 R2 001.fastq.gz 0:151 1:151 A:1904665460;C:1641687112;G:1685640709;T:1899319864;N:123311 151 151     1904665460 1641687112 1685640709 1899319864 123311 SRX7816553 SRS6227600 SRA1049075 Huazhong Agricultural University|Fisheries Huazhong Agricultural University 2 0.93873 0.93138 0.05142 0.05097 0.81542 0.81606 0.55954 0.54555 151 151 B B biological fallback assumption illumina hiseq_era unknown other unknown bulk unknown unknown   China 2020-02-28 Adult Adult Liver Liver and Biliary System
56984 56984 SRR11196603 SRX7816552 SRS6227599 SRP251016 PRJNA609258 Liver of zebrafish transcriptome analysis PRJNA609258 Other In order to study the effect of elovl6 on glucose and lipid metabolism in zebrafish we performed transcriptome analysis on wild type and elovl6 knock out zebrafish liver and screened for differential genes and performed corresponding functional analysis.         6AZ 3   breed:AB|age:3 months|sex:male|tissue:liver|genotype:elovl6+/ |sample type:tissue sample|replicate:Biosample replicate 3|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish: adult male liver 6AZ 3 6AZ 3 tissue sample     RNA-Seq TRANSCRIPTOMIC other PAIRED ILLUMINA Illumina HiSeq 4000   SRP251016     6AZ_3_data1_B0908nova1_R1_001.fastq.gz 6AZ_3_data1_B0908nova1_R2_001.fastq.gz fastq fastq 7863568110.0 26038305.0 6AZ 3 data1 B0908nova1 R1 001.fastq.gz 0:151 1:151 A:2014881110;C:1896581321;G:1935454917;T:2016514594;N:136168 151 151     2014881110 1896581321 1935454917 2016514594 136168 SRX7816552 SRS6227599 SRA1049075 Huazhong Agricultural University|Fisheries Huazhong Agricultural University 2 0.9624 0.95375 0.02136 0.0211 0.83924 0.83991 0.51254 0.48918 151 151 B B biological fallback assumption illumina hiseq_era unknown other unknown bulk unknown unknown   China 2020-02-28 Adult Adult Liver Liver and Biliary System
56985 56985 SRR11196604 SRX7816551 SRS6227598 SRP251016 PRJNA609258 Liver of zebrafish transcriptome analysis PRJNA609258 Other In order to study the effect of elovl6 on glucose and lipid metabolism in zebrafish we performed transcriptome analysis on wild type and elovl6 knock out zebrafish liver and screened for differential genes and performed corresponding functional analysis.         6AZ 2   breed:AB|age:3 months|sex:male|tissue:liver|genotype:elovl6+/ |sample type:tissue sample|replicate:Biosample replicate 2|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish: adult male liver 6AZ 2 6AZ 2 tissue sample     RNA-Seq TRANSCRIPTOMIC other PAIRED ILLUMINA Illumina HiSeq 4000   SRP251016     6AZ_2_data1_B0908nova1_R1_001.fastq.gz 6AZ_2_data1_B0908nova1_R2_001.fastq.gz fastq fastq 8308710976.0 27512288.0 6AZ 2 data1 B0908nova1 R1 001.fastq.gz 0:151 1:151 A:2143188156;C:1987276837;G:2022752491;T:2155350508;N:142984 151 151     2143188156 1987276837 2022752491 2155350508 142984 SRX7816551 SRS6227598 SRA1049075 Huazhong Agricultural University|Fisheries Huazhong Agricultural University 2 0.95133 0.94473 0.03339 0.03248 0.7853 0.78587 0.56978 0.56977 151 151 B B biological fallback assumption illumina hiseq_era unknown other unknown bulk unknown unknown   China 2020-02-28 Adult Adult Liver Liver and Biliary System
56986 56986 SRR11196605 SRX7816550 SRS6227597 SRP251016 PRJNA609258 Liver of zebrafish transcriptome analysis PRJNA609258 Other In order to study the effect of elovl6 on glucose and lipid metabolism in zebrafish we performed transcriptome analysis on wild type and elovl6 knock out zebrafish liver and screened for differential genes and performed corresponding functional analysis.         6AZ 1   breed:AB|age:3 months|sex:male|tissue:liver|genotype:elovl6+/ |sample type:tissue sample|replicate:Biosample replicate 1|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish: adult male liver 6AZ 1 6AZ 1 tissue sample     RNA-Seq TRANSCRIPTOMIC other PAIRED ILLUMINA Illumina HiSeq 4000   SRP251016     6AZ_1_data1_B0908nova1_R1_001.fastq.gz 6AZ_1_data1_B0908nova1_R2_001.fastq.gz fastq fastq 7804566370.0 25842935.0 6AZ 1 data1 B0908nova1 R1 001.fastq.gz 0:151 1:151 A:2025708268;C:1855225326;G:1895262215;T:2028235994;N:134567 151 151     2025708268 1855225326 1895262215 2028235994 134567 SRX7816550 SRS6227597 SRA1049075 Huazhong Agricultural University|Fisheries Huazhong Agricultural University 2 0.94946 0.938 0.03785 0.03667 0.82412 0.82554 0.5765 0.57839 151 151 B B biological fallback assumption illumina hiseq_era unknown other unknown bulk unknown unknown   China 2020-02-28 Adult Adult Liver Liver and Biliary System
56987 56987 SRR11196606 SRX7816549 SRS6227596 SRP251016 PRJNA609258 Liver of zebrafish transcriptome analysis PRJNA609258 Other In order to study the effect of elovl6 on glucose and lipid metabolism in zebrafish we performed transcriptome analysis on wild type and elovl6 knock out zebrafish liver and screened for differential genes and performed corresponding functional analysis.         WT2 3   breed:AB|age:3 months|sex:male|tissue:liver|genotype:wild type|sample type:tissue sample|replicate:Biosample replicate 3|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish: adult male liver WT2 3 WT2 3 tissue sample     RNA-Seq TRANSCRIPTOMIC other PAIRED ILLUMINA Illumina HiSeq 4000   SRP251016     WT2_3_data1_B0908nova1_R2_001.fastq.gz WT2_3_data1_B0908nova1_R1_001.fastq.gz fastq fastq 7609244246.0 25196173.0 WT2 3 data1 B0908nova1 R1 001.fastq.gz 0:151 1:151 A:1977543974;C:1808183850;G:1849868806;T:1973516167;N:131449 151 151     1977543974 1808183850 1849868806 1973516167 131449 SRX7816549 SRS6227596 SRA1049075 Huazhong Agricultural University|Fisheries Huazhong Agricultural University 2 0.94441 0.94404 0.03176 0.03147 0.84291 0.84319 0.35899 0.36091 151 151 B B biological fallback assumption illumina hiseq_era unknown other unknown bulk unknown unknown   China 2020-02-28 Adult Adult Liver Liver and Biliary System
56988 56988 SRR11196607 SRX7816548 SRS6227595 SRP251016 PRJNA609258 Liver of zebrafish transcriptome analysis PRJNA609258 Other In order to study the effect of elovl6 on glucose and lipid metabolism in zebrafish we performed transcriptome analysis on wild type and elovl6 knock out zebrafish liver and screened for differential genes and performed corresponding functional analysis.         WT2 2   breed:AB|age:3 months|sex:male|tissue:liver|genotype:wild type|sample type:tissue sample|replicate:Biosample replicate 2|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish: adult male liver WT2 2 WT2 2 tissue sample     RNA-Seq TRANSCRIPTOMIC other PAIRED ILLUMINA Illumina HiSeq 4000   SRP251016     WT2_2_data0_B0908nova1_R2_001.fastq.gz WT2_2_data1_B0908nova1_R1_001.fastq.gz fastq fastq 8980419376.0 29736488.0 WT2 2 data0 B0908nova1 R2 001.fastq.gz 0:151 1:151 A:2342146049;C:2122530586;G:2172380556;T:2343207362;N:154823 151 151     2342146049 2122530586 2172380556 2343207362 154823 SRX7816548 SRS6227595 SRA1049075 Huazhong Agricultural University|Fisheries Huazhong Agricultural University 2 0.95127 0.95202 0.02037 0.02056 0.86403 0.86415 0.22302 0.22207 151 151 B B biological fallback assumption illumina hiseq_era unknown other unknown bulk unknown unknown   China 2020-02-28 Adult Adult Liver Liver and Biliary System
56989 56989 SRR11196608 SRX7816547 SRS6227594 SRP251016 PRJNA609258 Liver of zebrafish transcriptome analysis PRJNA609258 Other In order to study the effect of elovl6 on glucose and lipid metabolism in zebrafish we performed transcriptome analysis on wild type and elovl6 knock out zebrafish liver and screened for differential genes and performed corresponding functional analysis.         WT2 1   breed:AB|age:3 months|sex:male|tissue:liver|genotype:wild type|sample type:tissue sample|replicate:Biosample replicate 1|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish: adult male liver WT2 1 WT2 1 tissue sample     RNA-Seq TRANSCRIPTOMIC other PAIRED ILLUMINA Illumina HiSeq 4000   SRP251016     WT2_1_data0_B0908nova1_R2_001.fastq.gz WT2_1_data1_B0908nova1_R1_001.fastq.gz fastq fastq 7079828280.0 23443140.0 WT2 1 data0 B0908nova1 R2 001.fastq.gz 0:151 1:151 A:1882267205;C:1641101437;G:1688847843;T:1867489798;N:121997 151 151     1882267205 1641101437 1688847843 1867489798 121997 SRX7816547 SRS6227594 SRA1049075 Huazhong Agricultural University|Fisheries Huazhong Agricultural University 2 0.9436 0.94212 0.02318 0.02292 0.87253 0.87257 0.26286 0.25913 151 151 B B biological fallback assumption illumina hiseq_era unknown other unknown bulk unknown unknown   China 2020-02-28 Adult Adult Liver Liver and Biliary System
58563 58563 SRR11365241 SRX7966550 SRS6352054 SRP253641 PRJNA613954 Liver sequencing post zebrafish fads2 knockout PRJNA613954 Other Zebrafish homozygous with fads2 gene deleted were obtained using CRISPR Cas9 technology and homozygous and wild type livers of the same age were sampled and sequenced by RNA seq.         WT liver A   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:90 days|sex:male|tissue:liver|replicate:replicate = WT 1 /WT 2/WT 3|BioSampleModel:Model organism or animal                 Wild type zebrafish A02 A02 Wild type zebrafish liver samples     RNA-Seq TRANSCRIPTOMIC other PAIRED ILLUMINA Illumina HiSeq 4000   SRP253641     WT2_data1_B0828nova1_R1_001.fastq.gz WT2_data1_B0828nova1_R2_001.fastq.gz WT3_data1_B0828nova1_R1_001.fastq.gz WT3_data1_B0828nova1_R2_001.fastq.gz WT4_data1_B0828nova1_R1_001.fastq.gz WT4_data1_B0828nova1_R2_001.fastq.gz fastq fastq fastq fastq fastq fastq 18864557444.0 62465422.0 WT2 data1 B0828nova1 R1 001.fastq.gz 0:151 1:151 A:4867225346;C:4512764116;G:4625458379;T:4858409569;N:700034 151 151     4867225346 4512764116 4625458379 4858409569 700034 SRX7966550 SRS6352054 SRA1058080 Huazhong Agricultural University|Fisheries College Huazhong Agricultural University 2 0.9457 0.94524 0.02545 0.02539 0.86525 0.86576 0.25803 0.26139 151 151 B B biological fallback assumption illumina hiseq_era unknown other unknown bulk unknown unknown   China 2020-03-23 Adult Adult Liver Liver and Biliary System
58564 58564 SRR11365242 SRX7966549 SRS6352055 SRP253641 PRJNA613954 Liver sequencing post zebrafish fads2 knockout PRJNA613954 Other Zebrafish homozygous with fads2 gene deleted were obtained using CRISPR Cas9 technology and homozygous and wild type livers of the same age were sampled and sequenced by RNA seq.         fads2 liver 1   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:90 days|sex:male|tissue:liver|replicate:replicate =fads2 1/fads2 2/fads2 3|BioSampleModel:Model organism or animal                 fads2 knockout zebrafish A01 A01 fads2 knockout zebrafish liver sample     RNA-Seq TRANSCRIPTOMIC other PAIRED ILLUMINA Illumina HiSeq 4000   SRP253641     FAD2_data0_B0828nova1_R2_001.fastq.gz FAD2_data1_B0828nova1_R1_001.fastq.gz FAD3_data0_B0828nova1_R2_001.fastq.gz FAD3_data1_B0828nova1_R1_001.fastq.gz FAD3_data1_B0906lane2_R2_001.fastq.gz FAD3_data2_B0906lane2_R1_001.fastq.gz FAD4_data1_B0828nova1_R1_001.fastq.gz FAD4_data1_B0828nova1_R2_001.fastq.gz fastq fastq fastq fastq fastq fastq fastq fastq 18781366410.0 62189955.0 FAD2 data0 B0828nova1 R2 001.fastq.gz 0:151 1:151 A:4919026740;C:4418984876;G:4547018069;T:4895678424;N:658301 151 151     4919026740 4418984876 4547018069 4895678424 658301 SRX7966549 SRS6352055 SRA1058080 Huazhong Agricultural University|Fisheries College Huazhong Agricultural University 2 0.93932 0.92655 0.04892 0.04772 0.80781 0.80963 0.46402 0.45061 151 151 B B biological fallback assumption illumina hiseq_era unknown other unknown bulk unknown unknown   China 2020-03-23 Adult Adult Liver Liver and Biliary System
61843 61843 SRR13005701 SRX9456909 SRS7669369 SRP291566 PRJNA675331 Transcriptome of liver of zebrafish in freshwater microcosm PRJNA675331 Other Metagenomic insights into the effects of residual chlorine in freshwater on the microbial community and antibiotic resistome         D7T0.1 3T   strain:Danio rerio9|age:6 mpf|dev stage:adult|sex:male|tissue:liver|BioSampleModel:Model organism or animal                 transcriptome D7T0.1 3T D7T0.1 3T liver transcriptome     RNA-Seq TRANSCRIPTOMIC other PAIRED ILLUMINA HiSeq X Ten   SRP291566     LN1-200511-P3-LR200509-0009-TCCTCATG_BKDL202576219-1a-AK1863_1.fq.gz LN1-200511-P3-LR200509-0009-TCCTCATG_BKDL202576219-1a-AK1863_2.fq.gz fastq fastq 7759689600.0 25865632.0 LN1 200511 P3 LR200509 0009 TCCTCATG BKDL202576219 1a AK1863 1.fq.gz 0:150 1:150 A:2061917961;C:1796404753;G:1848351078;T:2052890562;N:125246 150 150     2061917961 1796404753 1848351078 2052890562 125246 SRX9456909 SRS7669369 SRA1155868 Zhejiang University of Technology|College of Environment Zhejiang University of Technology 2 0.93162 0.93166 0.0788 0.07792 0.7989 0.80148 0.53717 0.54091 150 150 B B biological fallback assumption illumina hiseq_era unknown other unknown bulk unknown unknown   China 2020-11-08 Adult Adult Liver Liver and Biliary System
61844 61844 SRR13005702 SRX9456908 SRS7669368 SRP291566 PRJNA675331 Transcriptome of liver of zebrafish in freshwater microcosm PRJNA675331 Other Metagenomic insights into the effects of residual chlorine in freshwater on the microbial community and antibiotic resistome         D7T0.1 2T   strain:Danio rerio8|age:6 mpf|dev stage:adult|sex:male|tissue:liver|BioSampleModel:Model organism or animal                 transcriptome D7T0.1 2T D7T0.1 2T liver transcriptome     RNA-Seq TRANSCRIPTOMIC other PAIRED ILLUMINA HiSeq X Ten   SRP291566     LN1-200511-P3-LR200509-0008-CAAGGTAC_BKDL202576219-1a-AK690_1.fq.gz LN1-200511-P3-LR200509-0008-CAAGGTAC_BKDL202576219-1a-AK690_2.fq.gz fastq fastq 8775258300.0 29250861.0 LN1 200511 P3 LR200509 0008 CAAGGTAC BKDL202576219 1a AK690 1.fq.gz 0:150 1:150 A:2348056861;C:2026696714;G:2058450736;T:2341912433;N:141556 150 150     2348056861 2026696714 2058450736 2341912433 141556 SRX9456908 SRS7669368 SRA1155868 Zhejiang University of Technology|College of Environment Zhejiang University of Technology 2 0.93302 0.93406 0.07118 0.07122 0.80249 0.80405 0.53863 0.53804 150 150 B B biological fallback assumption illumina hiseq_era unknown other unknown bulk unknown unknown   China 2020-11-08 Adult Adult Liver Liver and Biliary System
61845 61845 SRR13005703 SRX9456907 SRS7669367 SRP291566 PRJNA675331 Transcriptome of liver of zebrafish in freshwater microcosm PRJNA675331 Other Metagenomic insights into the effects of residual chlorine in freshwater on the microbial community and antibiotic resistome         D7T0.1 1T   strain:Danio rerio7|age:6 mpf|dev stage:adult|sex:male|tissue:liver|BioSampleModel:Model organism or animal                 transcriptome D7T0.1 1T D7T0.1 1T liver transcriptome     RNA-Seq TRANSCRIPTOMIC other PAIRED ILLUMINA HiSeq X Ten   SRP291566     LN1-200511-P3-LR200509-0007-TCGGATTC_BKDL202576219-1a-AK692_1.fq.gz LN1-200511-P3-LR200509-0007-TCGGATTC_BKDL202576219-1a-AK692_2.fq.gz fastq fastq 9334683900.0 31115613.0 LN1 200511 P3 LR200509 0007 TCGGATTC BKDL202576219 1a AK692 1.fq.gz 0:150 1:150 A:2466410960;C:2177870985;G:2226887323;T:2463363578;N:151054 150 150     2466410960 2177870985 2226887323 2463363578 151054 SRX9456907 SRS7669367 SRA1155868 Zhejiang University of Technology|College of Environment Zhejiang University of Technology 2 0.93658 0.93772 0.06237 0.06259 0.76717 0.76846 0.51932 0.52468 150 150 B B biological fallback assumption illumina hiseq_era unknown other unknown bulk unknown unknown   China 2020-11-08 Adult Adult Liver Liver and Biliary System
61846 61846 SRR13005704 SRX9456906 SRS7669366 SRP291566 PRJNA675331 Transcriptome of liver of zebrafish in freshwater microcosm PRJNA675331 Other Metagenomic insights into the effects of residual chlorine in freshwater on the microbial community and antibiotic resistome         D7T0.01 3T   strain:Danio rerio6|age:6 mpf|dev stage:adult|sex:male|tissue:liver|BioSampleModel:Model organism or animal                 transcriptome D7T0.01 3T D7T0.01 3T liver transcriptome     RNA-Seq TRANSCRIPTOMIC other PAIRED ILLUMINA HiSeq X Ten   SRP291566     LN1-200511-P3-LR200509-0006-GTACACCT_BKDL202576219-1a-GA03_1.fq.gz LN1-200511-P3-LR200509-0006-GTACACCT_BKDL202576219-1a-GA03_2.fq.gz fastq fastq 7810905000.0 26036350.0 LN1 200511 P3 LR200509 0006 GTACACCT BKDL202576219 1a GA03 1.fq.gz 0:150 1:150 A:2087687846;C:1800905915;G:1837647496;T:2084538464;N:125279 150 150     2087687846 1800905915 1837647496 2084538464 125279 SRX9456906 SRS7669366 SRA1155868 Zhejiang University of Technology|College of Environment Zhejiang University of Technology 2 0.93771 0.93852 0.05587 0.05639 0.79738 0.79857 0.49601 0.49792 150 150 B B biological fallback assumption illumina hiseq_era unknown other unknown bulk unknown unknown   China 2020-11-08 Adult Adult Liver Liver and Biliary System
61847 61847 SRR13005705 SRX9456905 SRS7669365 SRP291566 PRJNA675331 Transcriptome of liver of zebrafish in freshwater microcosm PRJNA675331 Other Metagenomic insights into the effects of residual chlorine in freshwater on the microbial community and antibiotic resistome         D7T0.01 2T   strain:Danio rerio5|age:6 mpf|dev stage:adult|sex:male|tissue:liver|BioSampleModel:Model organism or animal                 transcriptome D7T0.01 2T D7T0.01 2T liver transcriptome     RNA-Seq TRANSCRIPTOMIC other PAIRED ILLUMINA HiSeq X Ten   SRP291566     LN1-200511-P3-LR200509-0005-CGTATCTC_BKDL202576219-1a-7UDI304_1.fq.gz LN1-200511-P3-LR200509-0005-CGTATCTC_BKDL202576219-1a-7UDI304_2.fq.gz fastq fastq 7062273600.0 23540912.0 LN1 200511 P3 LR200509 0005 CGTATCTC BKDL202576219 1a 7UDI304 1.fq.gz 0:150 1:150 A:1878583027;C:1633950067;G:1667209114;T:1882418513;N:112879 150 150     1878583027 1633950067 1667209114 1882418513 112879 SRX9456905 SRS7669365 SRA1155868 Zhejiang University of Technology|College of Environment Zhejiang University of Technology 2 0.94045 0.93742 0.05539 0.05488 0.79486 0.79665 0.51985 0.51586 150 150 B B biological fallback assumption illumina hiseq_era unknown other unknown bulk unknown unknown   China 2020-11-08 Adult Adult Liver Liver and Biliary System
61848 61848 SRR13005706 SRX9456904 SRS7669364 SRP291566 PRJNA675331 Transcriptome of liver of zebrafish in freshwater microcosm PRJNA675331 Other Metagenomic insights into the effects of residual chlorine in freshwater on the microbial community and antibiotic resistome         D7T0.01 1T   strain:Danio rerio4|age:6 mpf|dev stage:adult|sex:male|tissue:liver|BioSampleModel:Model organism or animal                 transcriptome D7T0.01 1T D7T0.01 1T liver transcriptome     RNA-Seq TRANSCRIPTOMIC other PAIRED ILLUMINA HiSeq X Ten   SRP291566     LN1-200511-P3-LR200509-0004-CGCAACTA_BKDL202576219-1a-GF10_1.fq.gz LN1-200511-P3-LR200509-0004-CGCAACTA_BKDL202576219-1a-GF10_2.fq.gz fastq fastq 9979490700.0 33264969.0 LN1 200511 P3 LR200509 0004 CGCAACTA BKDL202576219 1a GF10 1.fq.gz 0:150 1:150 A:2629838368;C:2338316677;G:2383608384;T:2627566936;N:160335 150 150     2629838368 2338316677 2383608384 2627566936 160335 SRX9456904 SRS7669364 SRA1155868 Zhejiang University of Technology|College of Environment Zhejiang University of Technology 2 0.93406 0.93357 0.05899 0.05941 0.76848 0.77005 0.49232 0.49018 150 150 B B biological fallback assumption illumina hiseq_era unknown other unknown bulk unknown unknown   China 2020-11-08 Adult Adult Liver Liver and Biliary System
61849 61849 SRR13005707 SRX9456903 SRS7669363 SRP291566 PRJNA675331 Transcriptome of liver of zebrafish in freshwater microcosm PRJNA675331 Other Metagenomic insights into the effects of residual chlorine in freshwater on the microbial community and antibiotic resistome         D7C3T   strain:Danio rerio3|age:6 mpf|dev stage:adult|sex:male|tissue:liver|BioSampleModel:Model organism or animal                 transcriptome D7C3T D7C3T liver transcriptome     RNA-Seq TRANSCRIPTOMIC other PAIRED ILLUMINA HiSeq X Ten   SRP291566     LN1-200511-P3-LR200509-0003-TCTAGGAG_BKDL202576219-1a-GG03_1.fq.gz LN1-200511-P3-LR200509-0003-TCTAGGAG_BKDL202576219-1a-GG03_2.fq.gz fastq fastq 6933711900.0 23112373.0 LN1 200511 P3 LR200509 0003 TCTAGGAG BKDL202576219 1a GG03 1.fq.gz 0:150 1:150 A:1819997682;C:1623004594;G:1665336029;T:1825261161;N:112434 150 150     1819997682 1623004594 1665336029 1825261161 112434 SRX9456903 SRS7669363 SRA1155868 Zhejiang University of Technology|College of Environment Zhejiang University of Technology 2 0.94044 0.94112 0.05323 0.05266 0.79967 0.79967 0.50345 0.52248 150 150 B B biological fallback assumption illumina hiseq_era unknown other unknown bulk unknown unknown   China 2020-11-08 Adult Adult Liver Liver and Biliary System
61850 61850 SRR13005708 SRX9456902 SRS7669362 SRP291566 PRJNA675331 Transcriptome of liver of zebrafish in freshwater microcosm PRJNA675331 Other Metagenomic insights into the effects of residual chlorine in freshwater on the microbial community and antibiotic resistome         D7C2T   strain:Danio rerio2|age:6 mpf|dev stage:adult|sex:male|tissue:liver|BioSampleModel:Model organism or animal                 transcriptome D7C2T D7C2T liver transcriptome     RNA-Seq TRANSCRIPTOMIC other PAIRED ILLUMINA HiSeq X Ten   SRP291566     LN1-200511-P3-LR200509-0002-CGAATACG_BKDL202576219-1a-AK900_1.fq.gz LN1-200511-P3-LR200509-0002-CGAATACG_BKDL202576219-1a-AK900_2.fq.gz fastq fastq 7784158800.0 25947196.0 LN1 200511 P3 LR200509 0002 CGAATACG BKDL202576219 1a AK900 1.fq.gz 0:150 1:150 A:2070840904;C:1805626835;G:1841274495;T:2066291795;N:124771 150 150     2070840904 1805626835 1841274495 2066291795 124771 SRX9456902 SRS7669362 SRA1155868 Zhejiang University of Technology|College of Environment Zhejiang University of Technology 2 0.9367 0.93691 0.06234 0.06227 0.74732 0.74742 0.51955 0.52201 150 150 B B biological fallback assumption illumina hiseq_era unknown other unknown bulk unknown unknown   China 2020-11-08 Adult Adult Liver Liver and Biliary System
61851 61851 SRR13005709 SRX9456901 SRS7669361 SRP291566 PRJNA675331 Transcriptome of liver of zebrafish in freshwater microcosm PRJNA675331 Other Metagenomic insights into the effects of residual chlorine in freshwater on the microbial community and antibiotic resistome         D7C1T   strain:Danio rerio1|age:6 mpf|dev stage:adult|sex:male|tissue:liver|BioSampleModel:Model organism or animal                 transcriptome D7C1T D7C1T liver transcriptome     RNA-Seq TRANSCRIPTOMIC other PAIRED ILLUMINA HiSeq X Ten   SRP291566     LN1-200511-P3-LR200509-0001-GTCAGTCA_BKDL202576219-1a-AK863_1.fq.gz LN1-200511-P3-LR200509-0001-GTCAGTCA_BKDL202576219-1a-AK863_2.fq.gz fastq fastq 9411576300.0 31371921.0 LN1 200511 P3 LR200509 0001 GTCAGTCA BKDL202576219 1a AK863 1.fq.gz 0:150 1:150 A:2466155867;C:2216352582;G:2254852998;T:2474063214;N:151639 150 150     2466155867 2216352582 2254852998 2474063214 151639 SRX9456901 SRS7669361 SRA1155868 Zhejiang University of Technology|College of Environment Zhejiang University of Technology 2 0.94371 0.94428 0.0539 0.05375 0.77204 0.77301 0.51643 0.52381 150 150 B B biological fallback assumption illumina hiseq_era unknown other unknown bulk unknown unknown   China 2020-11-08 Adult Adult Liver Liver and Biliary System
74443 74443 SRR23753443 SRX19604675 SRS16985185 SRP426326 PRJNA942359 Liver genome analysis of zebrafish PRJNA942359 Other Metabolic regulation         liver   strain:missing|isolate:missing|breed:missing|dev stage:4 mpf|sex:female|tissue:liver|BioSampleModel:Model organism or animal                 MJ20211129310 ZAO AN 1 ZAO AN 1 fish tissue     RNA-Seq TRANSCRIPTOMIC other PAIRED ILLUMINA Illumina HiSeq 4000   SRP426326     L1EFK302181--ZAO_AN_1.R1.raw.fastq.gz L1EFK302181--ZAO_AN_1.R2.raw.fastq.gz fastq fastq 7316965626.0 24228363.0 L1EFK302181 ZAO AN 1.R1.raw.fastq.gz 0:151 1:151 A:1865816303;C:1768238139;G:1857725441;T:1825138977;N:46766 151 151     1865816303 1768238139 1857725441 1825138977 46766 SRX19604675 SRS16985185 SRA1601760 Huazhong Agricultural University|College of Fisheries Huazhong Agricultural University 2 0.95936 0.95871 0.0255 0.02543 0.79508 0.79537 0.53979 0.54013 151 151 B B biological fallback assumption illumina hiseq_era unknown other unknown bulk unknown unknown   China 2023-03-08 Adult Adult Liver Liver and Biliary System
74444 74444 SRR23753444 SRX19604674 SRS16985185 SRP426326 PRJNA942359 Liver genome analysis of zebrafish PRJNA942359 Other Metabolic regulation         liver   strain:missing|isolate:missing|breed:missing|dev stage:4 mpf|sex:female|tissue:liver|BioSampleModel:Model organism or animal                 MJ20211129310 AN 3 AN 3 fish tissue     RNA-Seq TRANSCRIPTOMIC other PAIRED ILLUMINA Illumina HiSeq 4000   SRP426326     L1EFK302180--AN_3.R1.raw.fastq.gz L1EFK302180--AN_3.R2.raw.fastq.gz fastq fastq 7600739020.0 25168010.0 L1EFK302180 AN 3.R1.raw.fastq.gz 0:151 1:151 A:2017137041;C:1749830611;G:1883111013;T:1950611681;N:48674 151 151     2017137041 1749830611 1883111013 1950611681 48674 SRX19604674 SRS16985185 SRA1601760 Huazhong Agricultural University|College of Fisheries Huazhong Agricultural University 2 0.96477 0.96362 0.01528 0.01509 0.87795 0.87765 0.28414 0.28226 151 151 B B biological fallback assumption illumina hiseq_era unknown other unknown bulk unknown unknown   China 2023-03-08 Adult Adult Liver Liver and Biliary System
74445 74445 SRR23753445 SRX19604673 SRS16985185 SRP426326 PRJNA942359 Liver genome analysis of zebrafish PRJNA942359 Other Metabolic regulation         liver   strain:missing|isolate:missing|breed:missing|dev stage:4 mpf|sex:female|tissue:liver|BioSampleModel:Model organism or animal                 MJ20211129310 AN 2 AN 2 fish tissue     RNA-Seq TRANSCRIPTOMIC other PAIRED ILLUMINA Illumina HiSeq 4000   SRP426326     L1HGC210038--AN_2.R1.raw.fastq.gz L1HGC210038--AN_2.R2.raw.fastq.gz fastq fastq 6979159902.0 23109801.0 L1HGC210038 AN 2.R1.raw.fastq.gz 0:151 1:151 A:1893884756;C:1592273005;G:1665242849;T:1827327677;N:431615 151 151     1893884756 1592273005 1665242849 1827327677 431615 SRX19604673 SRS16985185 SRA1601760 Huazhong Agricultural University|College of Fisheries Huazhong Agricultural University 2 0.94987 0.94968 0.01627 0.01619 0.87343 0.87541 0.24244 0.24209 151 151 B B biological fallback assumption illumina hiseq_era unknown other unknown bulk unknown unknown   China 2023-03-08 Adult Adult Liver Liver and Biliary System
74446 74446 SRR23753446 SRX19604672 SRS16985185 SRP426326 PRJNA942359 Liver genome analysis of zebrafish PRJNA942359 Other Metabolic regulation         liver   strain:missing|isolate:missing|breed:missing|dev stage:4 mpf|sex:female|tissue:liver|BioSampleModel:Model organism or animal                 MJ20211129310 AN 1 AN 1 fish tissue     RNA-Seq TRANSCRIPTOMIC other PAIRED ILLUMINA Illumina HiSeq 4000   SRP426326     L1EFK302178--AN_1.R1.raw.fastq.gz L1EFK302178--AN_1.R2.raw.fastq.gz fastq fastq 6865983892.0 22735046.0 L1EFK302178 AN 1.R1.raw.fastq.gz 0:151 1:151 A:1830806568;C:1576437805;G:1682803997;T:1775891611;N:43911 151 151     1830806568 1576437805 1682803997 1775891611 43911 SRX19604672 SRS16985185 SRA1601760 Huazhong Agricultural University|College of Fisheries Huazhong Agricultural University 2 0.96488 0.96522 0.02531 0.02496 0.89301 0.89284 0.27417 0.27458 151 151 B B biological fallback assumption illumina hiseq_era unknown other unknown bulk unknown unknown   China 2023-03-08 Adult Adult Liver Liver and Biliary System
74447 74447 SRR23753447 SRX19604671 SRS16985185 SRP426326 PRJNA942359 Liver genome analysis of zebrafish PRJNA942359 Other Metabolic regulation         liver   strain:missing|isolate:missing|breed:missing|dev stage:4 mpf|sex:female|tissue:liver|BioSampleModel:Model organism or animal                 MJ20211129310 ZAO 3 ZAO 3 fish tissue     RNA-Seq TRANSCRIPTOMIC other PAIRED ILLUMINA Illumina HiSeq 4000   SRP426326     L1EFK302177--ZAO_3.R1.raw.fastq.gz L1EFK302177--ZAO_3.R2.raw.fastq.gz fastq fastq 7266562430.0 24061465.0 L1EFK302177 ZAO 3.R1.raw.fastq.gz 0:151 1:151 A:1863231171;C:1751495140;G:1824152940;T:1827630549;N:52630 151 151     1863231171 1751495140 1824152940 1827630549 52630 SRX19604671 SRS16985185 SRA1601760 Huazhong Agricultural University|College of Fisheries Huazhong Agricultural University 2 0.96109 0.96063 0.0279 0.02801 0.85679 0.85764 0.50613 0.50622 151 151 B B biological fallback assumption illumina hiseq_era unknown other unknown bulk unknown unknown   China 2023-03-08 Adult Adult Liver Liver and Biliary System
74448 74448 SRR23753448 SRX19604670 SRS16985185 SRP426326 PRJNA942359 Liver genome analysis of zebrafish PRJNA942359 Other Metabolic regulation         liver   strain:missing|isolate:missing|breed:missing|dev stage:4 mpf|sex:female|tissue:liver|BioSampleModel:Model organism or animal                 MJ20211129310 ZAO 2 ZAO 2 fish tissue     RNA-Seq TRANSCRIPTOMIC other PAIRED ILLUMINA Illumina HiSeq 4000   SRP426326     L1EFK302176--ZAO_2.R1.raw.fastq.gz L1EFK302176--ZAO_2.R2.raw.fastq.gz fastq fastq 6852601668.0 22690734.0 L1EFK302176 ZAO 2.R1.raw.fastq.gz 0:151 1:151 A:1772633881;C:1636965242;G:1706891308;T:1736066307;N:44930 151 151     1772633881 1636965242 1706891308 1736066307 44930 SRX19604670 SRS16985185 SRA1601760 Huazhong Agricultural University|College of Fisheries Huazhong Agricultural University 2 0.96596 0.96555 0.0215 0.0215 0.86922 0.86904 0.36237 0.36289 151 151 B B biological fallback assumption illumina hiseq_era unknown other unknown bulk unknown unknown   China 2023-03-08 Adult Adult Liver Liver and Biliary System
74449 74449 SRR23753449 SRX19604669 SRS16985185 SRP426326 PRJNA942359 Liver genome analysis of zebrafish PRJNA942359 Other Metabolic regulation         liver   strain:missing|isolate:missing|breed:missing|dev stage:4 mpf|sex:female|tissue:liver|BioSampleModel:Model organism or animal                 MJ20211129310 ZAO 1 ZAO 1 fish tissue     RNA-Seq TRANSCRIPTOMIC other PAIRED ILLUMINA Illumina HiSeq 4000   SRP426326     L1EFK302175--ZAO_1.R1.raw.fastq.gz L1EFK302175--ZAO_1.R2.raw.fastq.gz fastq fastq 7085404408.0 23461604.0 L1EFK302175 ZAO 1.R1.raw.fastq.gz 0:151 1:151 A:1787140479;C:1730825137;G:1822526416;T:1744866481;N:45895 151 151     1787140479 1730825137 1822526416 1744866481 45895 SRX19604669 SRS16985185 SRA1601760 Huazhong Agricultural University|College of Fisheries Huazhong Agricultural University 2 0.96898 0.9685 0.02085 0.02089 0.86251 0.86253 0.49278 0.46926 151 151 B B biological fallback assumption illumina hiseq_era unknown other unknown bulk unknown unknown   China 2023-03-08 Adult Adult Liver Liver and Biliary System
74450 74450 SRR23753450 SRX19604668 SRS16985185 SRP426326 PRJNA942359 Liver genome analysis of zebrafish PRJNA942359 Other Metabolic regulation         liver   strain:missing|isolate:missing|breed:missing|dev stage:4 mpf|sex:female|tissue:liver|BioSampleModel:Model organism or animal                 MJ20211129310 CK 3 CK 3 fish tissue     RNA-Seq TRANSCRIPTOMIC other PAIRED ILLUMINA Illumina HiSeq 4000   SRP426326     L1HGC210037--CK_3.R1.raw.fastq.gz L1HGC210037--CK_3.R2.raw.fastq.gz fastq fastq 7551372288.0 25004544.0 L1HGC210037 CK 3.R1.raw.fastq.gz 0:151 1:151 A:2039513812;C:1730275824;G:1820137252;T:1961052026;N:393374 151 151     2039513812 1730275824 1820137252 1961052026 393374 SRX19604668 SRS16985185 SRA1601760 Huazhong Agricultural University|College of Fisheries Huazhong Agricultural University 2 0.94039 0.94074 0.01437 0.01428 0.87994 0.88116 0.26777 0.2656 151 151 B B biological fallback assumption illumina hiseq_era unknown other unknown bulk unknown unknown   China 2023-03-08 Adult Adult Liver Liver and Biliary System
74451 74451 SRR23753451 SRX19604667 SRS16985185 SRP426326 PRJNA942359 Liver genome analysis of zebrafish PRJNA942359 Other Metabolic regulation         liver   strain:missing|isolate:missing|breed:missing|dev stage:4 mpf|sex:female|tissue:liver|BioSampleModel:Model organism or animal                 MJ20211129310 ZAO AN 3 ZAO AN 3 fish tissue     RNA-Seq TRANSCRIPTOMIC other PAIRED ILLUMINA Illumina HiSeq 4000   SRP426326     L1EFK302183--ZAO_AN_3.R1.raw.fastq.gz L1EFK302183--ZAO_AN_3.R2.raw.fastq.gz fastq fastq 6942045310.0 22986905.0 L1EFK302183 ZAO AN 3.R1.raw.fastq.gz 0:151 1:151 A:1803072092;C:1647404630;G:1723423569;T:1768101075;N:43944 151 151     1803072092 1647404630 1723423569 1768101075 43944 SRX19604667 SRS16985185 SRA1601760 Huazhong Agricultural University|College of Fisheries Huazhong Agricultural University 2 0.96869 0.96789 0.01518 0.01492 0.82785 0.82897 0.31236 0.32404 151 151 B B biological fallback assumption illumina hiseq_era unknown other unknown bulk unknown unknown   China 2023-03-08 Adult Adult Liver Liver and Biliary System
74452 74452 SRR23753452 SRX19604666 SRS16985185 SRP426326 PRJNA942359 Liver genome analysis of zebrafish PRJNA942359 Other Metabolic regulation         liver   strain:missing|isolate:missing|breed:missing|dev stage:4 mpf|sex:female|tissue:liver|BioSampleModel:Model organism or animal                 MJ20211129310 ZAO AN 2 ZAO AN 2 fish tissue     RNA-Seq TRANSCRIPTOMIC other PAIRED ILLUMINA Illumina HiSeq 4000   SRP426326     L1EFK302182--ZAO_AN_2.R1.raw.fastq.gz L1EFK302182--ZAO_AN_2.R2.raw.fastq.gz fastq fastq 7116066770.0 23563135.0 L1EFK302182 ZAO AN 2.R1.raw.fastq.gz 0:151 1:151 A:1859499087;C:1616016369;G:1857213120;T:1783293383;N:44811 151 151     1859499087 1616016369 1857213120 1783293383 44811 SRX19604666 SRS16985185 SRA1601760 Huazhong Agricultural University|College of Fisheries Huazhong Agricultural University 2 0.95435 0.95017 0.0201 0.01984 0.8243 0.82852 0.34631 0.3495 151 151 B B biological fallback assumption illumina hiseq_era unknown other unknown bulk unknown unknown   China 2023-03-08 Adult Adult Liver Liver and Biliary System
74453 74453 SRR23753453 SRX19604665 SRS16985185 SRP426326 PRJNA942359 Liver genome analysis of zebrafish PRJNA942359 Other Metabolic regulation         liver   strain:missing|isolate:missing|breed:missing|dev stage:4 mpf|sex:female|tissue:liver|BioSampleModel:Model organism or animal                 MJ20211129310 CK 2 CK 2 fish tissue     RNA-Seq TRANSCRIPTOMIC other PAIRED ILLUMINA Illumina HiSeq 4000   SRP426326     L1EFK302173--CK_2.R1.raw.fastq.gz L1EFK302173--CK_2.R2.raw.fastq.gz fastq fastq 6615464926.0 21905513.0 L1EFK302173 CK 2.R1.raw.fastq.gz 0:151 1:151 A:1745964999;C:1534043804;G:1630228936;T:1705185285;N:41902 151 151     1745964999 1534043804 1630228936 1705185285 41902 SRX19604665 SRS16985185 SRA1601760 Huazhong Agricultural University|College of Fisheries Huazhong Agricultural University 2 0.9638 0.96215 0.01995 0.02043 0.87527 0.87657 0.26991 0.26516 151 151 B B biological fallback assumption illumina hiseq_era unknown other unknown bulk unknown unknown   China 2023-03-08 Adult Adult Liver Liver and Biliary System
74454 74454 SRR23753454 SRX19604664 SRS16985185 SRP426326 PRJNA942359 Liver genome analysis of zebrafish PRJNA942359 Other Metabolic regulation         liver   strain:missing|isolate:missing|breed:missing|dev stage:4 mpf|sex:female|tissue:liver|BioSampleModel:Model organism or animal                 MJ20211129310 CK 1 CK 1 fish tissue     RNA-Seq TRANSCRIPTOMIC other PAIRED ILLUMINA Illumina HiSeq 4000   SRP426326     L1EFK302172--CK_1.R1.raw.fastq.gz L1EFK302172--CK_1.R2.raw.fastq.gz fastq fastq 7425264336.0 24586968.0 L1EFK302172 CK 1.R1.raw.fastq.gz 0:151 1:151 A:1982499942;C:1701675368;G:1808717686;T:1932325081;N:46259 151 151     1982499942 1701675368 1808717686 1932325081 46259 SRX19604664 SRS16985185 SRA1601760 Huazhong Agricultural University|College of Fisheries Huazhong Agricultural University 2 0.96899 0.96875 0.02611 0.0262 0.87401 0.87422 0.25775 0.25372 151 151 B B biological fallback assumption illumina hiseq_era unknown other unknown bulk unknown unknown   China 2023-03-08 Adult Adult Liver Liver and Biliary System

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;