metadata: run_metadata: 21 rows where experiment.library_selection = "cDNA_randomPriming" and experiment.library

21 rows where experiment.library_selection = "cDNA_randomPriming" and experiment.library_source = "TRANSCRIPTOMIC"

descending

Link	rowid ▼	run.accession	experiment.accession	sample.accession	study.accession	bioproject	study.title	study.alias	study.type	study.abstract	sample.title	sample.alias	sample.attributes	experiment.title	experiment.alias	experiment.library_name	experiment.design_description	experiment.library_strategy	experiment.library_source	experiment.library_selection	experiment.library_layout	experiment.platform	experiment.instrument_model	experiment.study_ref	run.filename	run.semantic_name	run.total_bases	run.total_spots	run.alias	run.read_lengths	run.base_counts	run.r1_length	run.r2_length	run.Acount	run.Ccount	run.Gcount	run.Tcount	run.Ncount	run.experiment	run.pool_member	submission.accession	submission.srasource	submission.bioprojectsource	seqdetective.judgement.mate1	seqdetective.judgement.mate2	seqdetective.judgement.reason	platform_family	instrument_generation	read_bias	selection_class	prep_kit	sc_or_bulk	tech_class	technology	submission.bioprojectsource.country	earliest_date	devstage_curation	devstage_curation_coarse	tissue_curation	tissue_curation_coarse
30611	30611	SRR27899041	SRX23559293	SRS20405500	SRP488601	PRJNA1073976	Transcriptome sequencing of zebrafish	PRJNA1073976	Other	This study utilized transcriptome sequencing technology to investigate the immunomodulatory effect of Lactobacillus gasseri LGV03 on zebrafish.	Zebrafish	Zebrafish	strain:AB\|isolate:Zebrafish\|breed:animals\|cultivar:not applicable\|ecotype:not applicable\|age:7 day\|dev stage:7 day\|collection date:2023 08 21\|geo loc name:China: Guangzhou\|sex:not applicable\|tissue:whole zebrafish\|BioSampleModel:Model organism or animal	RNA Seq of 7 dpf zebrafish	M3	M3	ployA enrichment mRNA fragmentation First strand cDNA synthesis magnetic bead purification of one strand second strand cDNA synthesis strand end repair addition of A at the 3 'end addition of splice Purification and library amplification Sequencing sample library construction completed	RNA-Seq	TRANSCRIPTOMIC	cDNA_randomPriming	PAIRED	VELA_DIAGNOSTICS	Sentosa SQ301	SRP488601	M3_QN202308290926_S33_L006_R1_001.fastq.gz M3_QN202308290926_S33_L006_R2_001.fastq.gz	fastq fastq	5459385900.0	18197953.0	M3 QN202308290926 S33 L006 R1 001.fastq.gz	0:150 1:150	A:1436510558;C:1285969737;G:1307232876;T:1429316327;N:356402	150	150	1436510558	1285969737	1307232876	1429316327	356402	SRX23559293	SRS20405500	SRA1798922	The Seventh Affiliated Hospital Of Southern Medical University\|Department of Laboratory Medicine	The Seventh Affiliated Hospital Of Southern Medical University	B	B	biological fallback assumption	legacy	early	unknown	random_priming	unknown	bulk	unknown	unknown	China	2024-02-07	Larval	Larval	Whole Organism	All anatomical structures
30612	30612	SRR27899042	SRX23559292	SRS20405500	SRP488601	PRJNA1073976	Transcriptome sequencing of zebrafish	PRJNA1073976	Other	This study utilized transcriptome sequencing technology to investigate the immunomodulatory effect of Lactobacillus gasseri LGV03 on zebrafish.	Zebrafish	Zebrafish	strain:AB\|isolate:Zebrafish\|breed:animals\|cultivar:not applicable\|ecotype:not applicable\|age:7 day\|dev stage:7 day\|collection date:2023 08 21\|geo loc name:China: Guangzhou\|sex:not applicable\|tissue:whole zebrafish\|BioSampleModel:Model organism or animal	RNA Seq of 7 dpf zebrafish	M2	M2	ployA enrichment mRNA fragmentation First strand cDNA synthesis magnetic bead purification of one strand second strand cDNA synthesis strand end repair addition of A at the 3 'end addition of splice Purification and library amplification Sequencing sample library construction completed	RNA-Seq	TRANSCRIPTOMIC	cDNA_randomPriming	PAIRED	VELA_DIAGNOSTICS	Sentosa SQ301	SRP488601	M2_QN202308290926_S32_L006_R1_001.fastq.gz M2_QN202308290926_S32_L006_R2_001.fastq.gz	fastq fastq	5650189800.0	18833966.0	M2 QN202308290926 S32 L006 R1 001.fastq.gz	0:150 1:150	A:1497095888;C:1322054602;G:1339271288;T:1491392152;N:375870	150	150	1497095888	1322054602	1339271288	1491392152	375870	SRX23559292	SRS20405500	SRA1798922	The Seventh Affiliated Hospital Of Southern Medical University\|Department of Laboratory Medicine	The Seventh Affiliated Hospital Of Southern Medical University	B	B	biological fallback assumption	legacy	early	unknown	random_priming	unknown	bulk	unknown	unknown	China	2024-02-07	Larval	Larval	Whole Organism	All anatomical structures
30613	30613	SRR27899043	SRX23559291	SRS20405500	SRP488601	PRJNA1073976	Transcriptome sequencing of zebrafish	PRJNA1073976	Other	This study utilized transcriptome sequencing technology to investigate the immunomodulatory effect of Lactobacillus gasseri LGV03 on zebrafish.	Zebrafish	Zebrafish	strain:AB\|isolate:Zebrafish\|breed:animals\|cultivar:not applicable\|ecotype:not applicable\|age:7 day\|dev stage:7 day\|collection date:2023 08 21\|geo loc name:China: Guangzhou\|sex:not applicable\|tissue:whole zebrafish\|BioSampleModel:Model organism or animal	RNA Seq of 7 dpf zebrafish	M1	M1	ployA enrichment mRNA fragmentation First strand cDNA synthesis magnetic bead purification of one strand second strand cDNA synthesis strand end repair addition of A at the 3 'end addition of splice Purification and library amplification Sequencing sample library construction completed	RNA-Seq	TRANSCRIPTOMIC	cDNA_randomPriming	PAIRED	VELA_DIAGNOSTICS	Sentosa SQ301	SRP488601	M1_QN202308290926_S31_L006_R1_001.fastq.gz M1_QN202308290926_S31_L006_R2_001.fastq.gz	fastq fastq	5939011200.0	19796704.0	M1 QN202308290926 S31 L006 R1 001.fastq.gz	0:150 1:150	A:1545732755;C:1425193066;G:1428641258;T:1539050226;N:393895	150	150	1545732755	1425193066	1428641258	1539050226	393895	SRX23559291	SRS20405500	SRA1798922	The Seventh Affiliated Hospital Of Southern Medical University\|Department of Laboratory Medicine	The Seventh Affiliated Hospital Of Southern Medical University	B	B	biological fallback assumption	legacy	early	unknown	random_priming	unknown	bulk	unknown	unknown	China	2024-02-07	Larval	Larval	Whole Organism	All anatomical structures
30614	30614	SRR27899044	SRX23559290	SRS20405500	SRP488601	PRJNA1073976	Transcriptome sequencing of zebrafish	PRJNA1073976	Other	This study utilized transcriptome sequencing technology to investigate the immunomodulatory effect of Lactobacillus gasseri LGV03 on zebrafish.	Zebrafish	Zebrafish	strain:AB\|isolate:Zebrafish\|breed:animals\|cultivar:not applicable\|ecotype:not applicable\|age:7 day\|dev stage:7 day\|collection date:2023 08 21\|geo loc name:China: Guangzhou\|sex:not applicable\|tissue:whole zebrafish\|BioSampleModel:Model organism or animal	RNA Seq of 7 dpf zebrafish	B3	B3	ployA enrichment mRNA fragmentation First strand cDNA synthesis magnetic bead purification of one strand second strand cDNA synthesis strand end repair addition of A at the 3 'end addition of splice Purification and library amplification Sequencing sample library construction completed	RNA-Seq	TRANSCRIPTOMIC	cDNA_randomPriming	PAIRED	VELA_DIAGNOSTICS	Sentosa SQ301	SRP488601	B3_QN202308290926_S30_L006_R1_001.fastq.gz B3_QN202308290926_S30_L006_R2_001.fastq.gz	fastq fastq	5798168100.0	19327227.0	B3 QN202308290926 S30 L006 R1 001.fastq.gz	0:150 1:150	A:1523711096;C:1370345137;G:1386721981;T:1517002959;N:386927	150	150	1523711096	1370345137	1386721981	1517002959	386927	SRX23559290	SRS20405500	SRA1798922	The Seventh Affiliated Hospital Of Southern Medical University\|Department of Laboratory Medicine	The Seventh Affiliated Hospital Of Southern Medical University	B	B	biological fallback assumption	legacy	early	unknown	random_priming	unknown	bulk	unknown	unknown	China	2024-02-07	Larval	Larval	Whole Organism	All anatomical structures
30615	30615	SRR27899045	SRX23559289	SRS20405500	SRP488601	PRJNA1073976	Transcriptome sequencing of zebrafish	PRJNA1073976	Other	This study utilized transcriptome sequencing technology to investigate the immunomodulatory effect of Lactobacillus gasseri LGV03 on zebrafish.	Zebrafish	Zebrafish	strain:AB\|isolate:Zebrafish\|breed:animals\|cultivar:not applicable\|ecotype:not applicable\|age:7 day\|dev stage:7 day\|collection date:2023 08 21\|geo loc name:China: Guangzhou\|sex:not applicable\|tissue:whole zebrafish\|BioSampleModel:Model organism or animal	RNA Seq of 7 dpf zebrafish	B2	B2	ployA enrichment mRNA fragmentation First strand cDNA synthesis magnetic bead purification of one strand second strand cDNA synthesis strand end repair addition of A at the 3 'end addition of splice Purification and library amplification Sequencing sample library construction completed	RNA-Seq	TRANSCRIPTOMIC	cDNA_randomPriming	PAIRED	VELA_DIAGNOSTICS	Sentosa SQ301	SRP488601	B2_QN202308290926_S29_L006_R1_001.fastq.gz B2_QN202308290926_S29_L006_R2_001.fastq.gz	fastq fastq	5863484400.0	19544948.0	B2 QN202308290926 S29 L006 R1 001.fastq.gz	0:150 1:150	A:1534634834;C:1394273573;G:1406495277;T:1527691926;N:388790	150	150	1534634834	1394273573	1406495277	1527691926	388790	SRX23559289	SRS20405500	SRA1798922	The Seventh Affiliated Hospital Of Southern Medical University\|Department of Laboratory Medicine	The Seventh Affiliated Hospital Of Southern Medical University	B	B	biological fallback assumption	legacy	early	unknown	random_priming	unknown	bulk	unknown	unknown	China	2024-02-07	Larval	Larval	Whole Organism	All anatomical structures
30616	30616	SRR27899046	SRX23559288	SRS20405500	SRP488601	PRJNA1073976	Transcriptome sequencing of zebrafish	PRJNA1073976	Other	This study utilized transcriptome sequencing technology to investigate the immunomodulatory effect of Lactobacillus gasseri LGV03 on zebrafish.	Zebrafish	Zebrafish	strain:AB\|isolate:Zebrafish\|breed:animals\|cultivar:not applicable\|ecotype:not applicable\|age:7 day\|dev stage:7 day\|collection date:2023 08 21\|geo loc name:China: Guangzhou\|sex:not applicable\|tissue:whole zebrafish\|BioSampleModel:Model organism or animal	RNA Seq of 7 dpf zebrafish	B1	B1	ployA enrichment mRNA fragmentation First strand cDNA synthesis magnetic bead purification of one strand second strand cDNA synthesis strand end repair addition of A at the 3 'end addition of splice Purification and library amplification Sequencing sample library construction completed	RNA-Seq	TRANSCRIPTOMIC	cDNA_randomPriming	PAIRED	VELA_DIAGNOSTICS	Sentosa SQ301	SRP488601	B1_QN202308290926_S28_L006_R1_001.fastq.gz B1_QN202308290926_S28_L006_R2_001.fastq.gz	fastq fastq	6041746500.0	20139155.0	B1 QN202308290926 S28 L006 R1 001.fastq.gz	0:150 1:150	A:1585824243;C:1429955080;G:1445995253;T:1579566974;N:404950	150	150	1585824243	1429955080	1445995253	1579566974	404950	SRX23559288	SRS20405500	SRA1798922	The Seventh Affiliated Hospital Of Southern Medical University\|Department of Laboratory Medicine	The Seventh Affiliated Hospital Of Southern Medical University	B	B	biological fallback assumption	legacy	early	unknown	random_priming	unknown	bulk	unknown	unknown	China	2024-02-07	Larval	Larval	Whole Organism	All anatomical structures
30617	30617	SRR27899047	SRX23559287	SRS20405500	SRP488601	PRJNA1073976	Transcriptome sequencing of zebrafish	PRJNA1073976	Other	This study utilized transcriptome sequencing technology to investigate the immunomodulatory effect of Lactobacillus gasseri LGV03 on zebrafish.	Zebrafish	Zebrafish	strain:AB\|isolate:Zebrafish\|breed:animals\|cultivar:not applicable\|ecotype:not applicable\|age:7 day\|dev stage:7 day\|collection date:2023 08 21\|geo loc name:China: Guangzhou\|sex:not applicable\|tissue:whole zebrafish\|BioSampleModel:Model organism or animal	RNA Seq of 7 dpf zebrafish	C3	C3	ployA enrichment mRNA fragmentation First strand cDNA synthesis magnetic bead purification of one strand second strand cDNA synthesis strand end repair addition of A at the 3 'end addition of splice Purification and library amplification Sequencing sample library construction completed	RNA-Seq	TRANSCRIPTOMIC	cDNA_randomPriming	PAIRED	VELA_DIAGNOSTICS	Sentosa SQ301	SRP488601	C3_QN202308290926_S27_L006_R1_001.fastq.gz C3_QN202308290926_S27_L006_R2_001.fastq.gz	fastq fastq	6065066400.0	20216888.0	C3 QN202308290926 S27 L006 R1 001.fastq.gz	0:150 1:150	A:1594983080;C:1430417950;G:1449159595;T:1590101910;N:403865	150	150	1594983080	1430417950	1449159595	1590101910	403865	SRX23559287	SRS20405500	SRA1798922	The Seventh Affiliated Hospital Of Southern Medical University\|Department of Laboratory Medicine	The Seventh Affiliated Hospital Of Southern Medical University	B	B	biological fallback assumption	legacy	early	unknown	random_priming	unknown	bulk	unknown	unknown	China	2024-02-07	Larval	Larval	Whole Organism	All anatomical structures
30618	30618	SRR27899048	SRX23559286	SRS20405500	SRP488601	PRJNA1073976	Transcriptome sequencing of zebrafish	PRJNA1073976	Other	This study utilized transcriptome sequencing technology to investigate the immunomodulatory effect of Lactobacillus gasseri LGV03 on zebrafish.	Zebrafish	Zebrafish	strain:AB\|isolate:Zebrafish\|breed:animals\|cultivar:not applicable\|ecotype:not applicable\|age:7 day\|dev stage:7 day\|collection date:2023 08 21\|geo loc name:China: Guangzhou\|sex:not applicable\|tissue:whole zebrafish\|BioSampleModel:Model organism or animal	RNA Seq of 7 dpf zebrafish	C2	C2	ployA enrichment mRNA fragmentation First strand cDNA synthesis magnetic bead purification of one strand second strand cDNA synthesis strand end repair addition of A at the 3 'end addition of splice Purification and library amplification Sequencing sample library construction completed	RNA-Seq	TRANSCRIPTOMIC	cDNA_randomPriming	PAIRED	VELA_DIAGNOSTICS	Sentosa SQ301	SRP488601	C2_QN202308290926_S26_L006_R1_001.fastq.gz C2_QN202308290926_S26_L006_R2_001.fastq.gz	fastq fastq	5689528200.0	18965094.0	C2 QN202308290926 S26 L006 R1 001.fastq.gz	0:150 1:150	A:1489096177;C:1343812970;G:1370219696;T:1486021320;N:378037	150	150	1489096177	1343812970	1370219696	1486021320	378037	SRX23559286	SRS20405500	SRA1798922	The Seventh Affiliated Hospital Of Southern Medical University\|Department of Laboratory Medicine	The Seventh Affiliated Hospital Of Southern Medical University	B	B	biological fallback assumption	legacy	early	unknown	random_priming	unknown	bulk	unknown	unknown	China	2024-02-07	Larval	Larval	Whole Organism	All anatomical structures
30619	30619	SRR27899049	SRX23559285	SRS20405500	SRP488601	PRJNA1073976	Transcriptome sequencing of zebrafish	PRJNA1073976	Other	This study utilized transcriptome sequencing technology to investigate the immunomodulatory effect of Lactobacillus gasseri LGV03 on zebrafish.	Zebrafish	Zebrafish	strain:AB\|isolate:Zebrafish\|breed:animals\|cultivar:not applicable\|ecotype:not applicable\|age:7 day\|dev stage:7 day\|collection date:2023 08 21\|geo loc name:China: Guangzhou\|sex:not applicable\|tissue:whole zebrafish\|BioSampleModel:Model organism or animal	RNA Seq of 7 dpf zebrafish	C1	C1	ployA enrichment mRNA fragmentation First strand cDNA synthesis magnetic bead purification of one strand second strand cDNA synthesis strand end repair addition of A at the 3 'end addition of splice Purification and library amplification Sequencing sample library construction completed	RNA-Seq	TRANSCRIPTOMIC	cDNA_randomPriming	PAIRED	VELA_DIAGNOSTICS	Sentosa SQ301	SRP488601	C1_QN202308290926_S25_L006_R1_001.fastq.gz C1_QN202308290926_S25_L006_R2_001.fastq.gz	fastq fastq	5998914900.0	19996383.0	C1 QN202308290926 S25 L006 R1 001.fastq.gz	0:150 1:150	A:1558078274;C:1434298148;G:1451514838;T:1554627854;N:395786	150	150	1558078274	1434298148	1451514838	1554627854	395786	SRX23559285	SRS20405500	SRA1798922	The Seventh Affiliated Hospital Of Southern Medical University\|Department of Laboratory Medicine	The Seventh Affiliated Hospital Of Southern Medical University	B	B	biological fallback assumption	legacy	early	unknown	random_priming	unknown	bulk	unknown	unknown	China	2024-02-07	Larval	Larval	Whole Organism	All anatomical structures
35980	35980	SRR33796117	SRX29017800	SRS25233880	SRP589371	PRJNA1256770	Danio rerio Raw sequence reads	PRJNA1256770	Whole Genome Sequencing	Transcriptome sequencing was used to identify genes regulated by the polysaccharides that affect the immune activity of zebrafish.	Model organism or animal sample from Danio rerio	Zebrafish treatment with polysaccharides	strain:transgenic neutrophil green fluorescent MPX\|age:3 dpf\|dev stage:embryo\|collection date:2024 05 01\|geo loc name:China: Zhejiang\|sex:pooled male and female\|tissue:whole body\|disease:Immunosuppression\|MX:control sample\|P500:immune suppression model treated with 500 ug/mL polysaccharide\|P1000:immune suppression model treated with 1000 ug/mL polysaccharide\|P2000:immune suppression model treated with 2000 ug/mL polysaccharide\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: embryo whole body	P2000 1	P2000 1	Total RNA was extracted from zebrafish tissue using TRIzol reagent according to the manufacturer's protocol. RNA integrity was verified using an Agilent 2100 Bioanalyzer. mRNA was enriched using polyA selection and fragmented. First and second strand cDNA synthesis was performed followed by end repair A tailing and adapter ligation. The library was amplified by PCR and sequenced using the BGISEQ MGISEQ 2000RS platform with paired end 150 bp reads.	RNA-Seq	TRANSCRIPTOMIC	cDNA_randomPriming	PAIRED	BGISEQ	MGISEQ-2000RS	SRP589371	P2000_1_1.fq.gz P2000_1_2.fq.gz	fastq fastq	6682157100.0	22273857.0	P2000 1 1.fq.gz	0:150 1:150	A:1750970707;C:1591819991;G:1593263349;T:1746103053;N:0	150	150	1750970707	1591819991	1593263349	1746103053	0	SRX29017800	SRS25233880	SRA2141272	West Anhui Universiaty\|College of Biotechnology and Pharmaceutical Engine	West Anhui Universiaty	B	B	biological fallback assumption	bgi	bgi	unknown	random_priming	unknown	bulk	unknown	unknown	China	2025-06-02	Larval	Larval	Trunk	Surface Structure
35981	35981	SRR33796118	SRX29017799	SRS25233880	SRP589371	PRJNA1256770	Danio rerio Raw sequence reads	PRJNA1256770	Whole Genome Sequencing	Transcriptome sequencing was used to identify genes regulated by the polysaccharides that affect the immune activity of zebrafish.	Model organism or animal sample from Danio rerio	Zebrafish treatment with polysaccharides	strain:transgenic neutrophil green fluorescent MPX\|age:3 dpf\|dev stage:embryo\|collection date:2024 05 01\|geo loc name:China: Zhejiang\|sex:pooled male and female\|tissue:whole body\|disease:Immunosuppression\|MX:control sample\|P500:immune suppression model treated with 500 ug/mL polysaccharide\|P1000:immune suppression model treated with 1000 ug/mL polysaccharide\|P2000:immune suppression model treated with 2000 ug/mL polysaccharide\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: embryo whole body	P1000 3	P1000 3	Total RNA was extracted from zebrafish tissue using TRIzol reagent according to the manufacturer's protocol. RNA integrity was verified using an Agilent 2100 Bioanalyzer. mRNA was enriched using polyA selection and fragmented. First and second strand cDNA synthesis was performed followed by end repair A tailing and adapter ligation. The library was amplified by PCR and sequenced using the BGISEQ MGISEQ 2000RS platform with paired end 150 bp reads.	RNA-Seq	TRANSCRIPTOMIC	cDNA_randomPriming	PAIRED	BGISEQ	MGISEQ-2000RS	SRP589371	P1000_3_1.fq.gz P1000_3_2.fq.gz	fastq fastq	6596943000.0	21989810.0	P1000 3 1.fq.gz	0:150 1:150	A:1725528987;C:1574140428;G:1576046656;T:1721226929;N:0	150	150	1725528987	1574140428	1576046656	1721226929	0	SRX29017799	SRS25233880	SRA2141272	West Anhui Universiaty\|College of Biotechnology and Pharmaceutical Engine	West Anhui Universiaty	B	B	biological fallback assumption	bgi	bgi	unknown	random_priming	unknown	bulk	unknown	unknown	China	2025-06-02	Larval	Larval	Trunk	Surface Structure
35982	35982	SRR33796119	SRX29017798	SRS25233880	SRP589371	PRJNA1256770	Danio rerio Raw sequence reads	PRJNA1256770	Whole Genome Sequencing	Transcriptome sequencing was used to identify genes regulated by the polysaccharides that affect the immune activity of zebrafish.	Model organism or animal sample from Danio rerio	Zebrafish treatment with polysaccharides	strain:transgenic neutrophil green fluorescent MPX\|age:3 dpf\|dev stage:embryo\|collection date:2024 05 01\|geo loc name:China: Zhejiang\|sex:pooled male and female\|tissue:whole body\|disease:Immunosuppression\|MX:control sample\|P500:immune suppression model treated with 500 ug/mL polysaccharide\|P1000:immune suppression model treated with 1000 ug/mL polysaccharide\|P2000:immune suppression model treated with 2000 ug/mL polysaccharide\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: embryo whole body	P1000 2	P1000 2	Total RNA was extracted from zebrafish tissue using TRIzol reagent according to the manufacturer's protocol. RNA integrity was verified using an Agilent 2100 Bioanalyzer. mRNA was enriched using polyA selection and fragmented. First and second strand cDNA synthesis was performed followed by end repair A tailing and adapter ligation. The library was amplified by PCR and sequenced using the BGISEQ MGISEQ 2000RS platform with paired end 150 bp reads.	RNA-Seq	TRANSCRIPTOMIC	cDNA_randomPriming	PAIRED	BGISEQ	MGISEQ-2000RS	SRP589371	P1000_2_1.fq.gz P1000_2_2.fq.gz	fastq fastq	6677331000.0	22257770.0	P1000 2 1.fq.gz	0:150 1:150	A:1758237128;C:1582217484;G:1584403835;T:1752472553;N:0	150	150	1758237128	1582217484	1584403835	1752472553	0	SRX29017798	SRS25233880	SRA2141272	West Anhui Universiaty\|College of Biotechnology and Pharmaceutical Engine	West Anhui Universiaty	B	B	biological fallback assumption	bgi	bgi	unknown	random_priming	unknown	bulk	unknown	unknown	China	2025-06-02	Larval	Larval	Trunk	Surface Structure
35983	35983	SRR33796120	SRX29017797	SRS25233880	SRP589371	PRJNA1256770	Danio rerio Raw sequence reads	PRJNA1256770	Whole Genome Sequencing	Transcriptome sequencing was used to identify genes regulated by the polysaccharides that affect the immune activity of zebrafish.	Model organism or animal sample from Danio rerio	Zebrafish treatment with polysaccharides	strain:transgenic neutrophil green fluorescent MPX\|age:3 dpf\|dev stage:embryo\|collection date:2024 05 01\|geo loc name:China: Zhejiang\|sex:pooled male and female\|tissue:whole body\|disease:Immunosuppression\|MX:control sample\|P500:immune suppression model treated with 500 ug/mL polysaccharide\|P1000:immune suppression model treated with 1000 ug/mL polysaccharide\|P2000:immune suppression model treated with 2000 ug/mL polysaccharide\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: embryo whole body	P1000 1	P1000 1	Total RNA was extracted from zebrafish tissue using TRIzol reagent according to the manufacturer's protocol. RNA integrity was verified using an Agilent 2100 Bioanalyzer. mRNA was enriched using polyA selection and fragmented. First and second strand cDNA synthesis was performed followed by end repair A tailing and adapter ligation. The library was amplified by PCR and sequenced using the BGISEQ MGISEQ 2000RS platform with paired end 150 bp reads.	RNA-Seq	TRANSCRIPTOMIC	cDNA_randomPriming	PAIRED	BGISEQ	MGISEQ-2000RS	SRP589371	P1000_1_1.fq.gz P1000_1_2.fq.gz	fastq fastq	6771926100.0	22573087.0	P1000 1 1.fq.gz	0:150 1:150	A:1788071352;C:1600799117;G:1602227700;T:1780827931;N:0	150	150	1788071352	1600799117	1602227700	1780827931	0	SRX29017797	SRS25233880	SRA2141272	West Anhui Universiaty\|College of Biotechnology and Pharmaceutical Engine	West Anhui Universiaty	B	B	biological fallback assumption	bgi	bgi	unknown	random_priming	unknown	bulk	unknown	unknown	China	2025-06-02	Larval	Larval	Trunk	Surface Structure
35984	35984	SRR33796121	SRX29017796	SRS25233880	SRP589371	PRJNA1256770	Danio rerio Raw sequence reads	PRJNA1256770	Whole Genome Sequencing	Transcriptome sequencing was used to identify genes regulated by the polysaccharides that affect the immune activity of zebrafish.	Model organism or animal sample from Danio rerio	Zebrafish treatment with polysaccharides	strain:transgenic neutrophil green fluorescent MPX\|age:3 dpf\|dev stage:embryo\|collection date:2024 05 01\|geo loc name:China: Zhejiang\|sex:pooled male and female\|tissue:whole body\|disease:Immunosuppression\|MX:control sample\|P500:immune suppression model treated with 500 ug/mL polysaccharide\|P1000:immune suppression model treated with 1000 ug/mL polysaccharide\|P2000:immune suppression model treated with 2000 ug/mL polysaccharide\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: embryo whole body	P500 3	P500 3	Total RNA was extracted from zebrafish tissue using TRIzol reagent according to the manufacturer's protocol. RNA integrity was verified using an Agilent 2100 Bioanalyzer. mRNA was enriched using polyA selection and fragmented. First and second strand cDNA synthesis was performed followed by end repair A tailing and adapter ligation. The library was amplified by PCR and sequenced using the BGISEQ MGISEQ 2000RS platform with paired end 150 bp reads.	RNA-Seq	TRANSCRIPTOMIC	cDNA_randomPriming	PAIRED	BGISEQ	MGISEQ-2000RS	SRP589371	P500_3_1.fq.gz P500_3_2.fq.gz	fastq fastq	6691956300.0	22306521.0	P500 3 1.fq.gz	0:150 1:150	A:1763763611;C:1584417511;G:1585842124;T:1757933054;N:0	150	150	1763763611	1584417511	1585842124	1757933054	0	SRX29017796	SRS25233880	SRA2141272	West Anhui Universiaty\|College of Biotechnology and Pharmaceutical Engine	West Anhui Universiaty	B	B	biological fallback assumption	bgi	bgi	unknown	random_priming	unknown	bulk	unknown	unknown	China	2025-06-02	Larval	Larval	Trunk	Surface Structure
35985	35985	SRR33796122	SRX29017795	SRS25233880	SRP589371	PRJNA1256770	Danio rerio Raw sequence reads	PRJNA1256770	Whole Genome Sequencing	Transcriptome sequencing was used to identify genes regulated by the polysaccharides that affect the immune activity of zebrafish.	Model organism or animal sample from Danio rerio	Zebrafish treatment with polysaccharides	strain:transgenic neutrophil green fluorescent MPX\|age:3 dpf\|dev stage:embryo\|collection date:2024 05 01\|geo loc name:China: Zhejiang\|sex:pooled male and female\|tissue:whole body\|disease:Immunosuppression\|MX:control sample\|P500:immune suppression model treated with 500 ug/mL polysaccharide\|P1000:immune suppression model treated with 1000 ug/mL polysaccharide\|P2000:immune suppression model treated with 2000 ug/mL polysaccharide\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: embryo whole body	P500 2	P500 2	Total RNA was extracted from zebrafish tissue using TRIzol reagent according to the manufacturer's protocol. RNA integrity was verified using an Agilent 2100 Bioanalyzer. mRNA was enriched using polyA selection and fragmented. First and second strand cDNA synthesis was performed followed by end repair A tailing and adapter ligation. The library was amplified by PCR and sequenced using the BGISEQ MGISEQ 2000RS platform with paired end 150 bp reads.	RNA-Seq	TRANSCRIPTOMIC	cDNA_randomPriming	PAIRED	BGISEQ	MGISEQ-2000RS	SRP589371	P500_2_1.fq.gz P500_2_2.fq.gz	fastq fastq	6720858300.0	22402861.0	P500 2 1.fq.gz	0:150 1:150	A:1752279513;C:1609781801;G:1611483135;T:1747313851;N:0	150	150	1752279513	1609781801	1611483135	1747313851	0	SRX29017795	SRS25233880	SRA2141272	West Anhui Universiaty\|College of Biotechnology and Pharmaceutical Engine	West Anhui Universiaty	B	B	biological fallback assumption	bgi	bgi	unknown	random_priming	unknown	bulk	unknown	unknown	China	2025-06-02	Larval	Larval	Trunk	Surface Structure
35986	35986	SRR33796123	SRX29017794	SRS25233880	SRP589371	PRJNA1256770	Danio rerio Raw sequence reads	PRJNA1256770	Whole Genome Sequencing	Transcriptome sequencing was used to identify genes regulated by the polysaccharides that affect the immune activity of zebrafish.	Model organism or animal sample from Danio rerio	Zebrafish treatment with polysaccharides	strain:transgenic neutrophil green fluorescent MPX\|age:3 dpf\|dev stage:embryo\|collection date:2024 05 01\|geo loc name:China: Zhejiang\|sex:pooled male and female\|tissue:whole body\|disease:Immunosuppression\|MX:control sample\|P500:immune suppression model treated with 500 ug/mL polysaccharide\|P1000:immune suppression model treated with 1000 ug/mL polysaccharide\|P2000:immune suppression model treated with 2000 ug/mL polysaccharide\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: embryo whole body	P500 1	P500 1	Total RNA was extracted from zebrafish tissue using TRIzol reagent according to the manufacturer's protocol. RNA integrity was verified using an Agilent 2100 Bioanalyzer. mRNA was enriched using polyA selection and fragmented. First and second strand cDNA synthesis was performed followed by end repair A tailing and adapter ligation. The library was amplified by PCR and sequenced using the BGISEQ MGISEQ 2000RS platform with paired end 150 bp reads.	RNA-Seq	TRANSCRIPTOMIC	cDNA_randomPriming	PAIRED	BGISEQ	MGISEQ-2000RS	SRP589371	P500_1_1.fq.gz P500_1_2.fq.gz	fastq fastq	6820862100.0	22736207.0	P500 1 1.fq.gz	0:150 1:150	A:1812260874;C:1601860387;G:1602603805;T:1804137034;N:0	150	150	1812260874	1601860387	1602603805	1804137034	0	SRX29017794	SRS25233880	SRA2141272	West Anhui Universiaty\|College of Biotechnology and Pharmaceutical Engine	West Anhui Universiaty	B	B	biological fallback assumption	bgi	bgi	unknown	random_priming	unknown	bulk	unknown	unknown	China	2025-06-02	Larval	Larval	Trunk	Surface Structure
35987	35987	SRR33796124	SRX29017793	SRS25233880	SRP589371	PRJNA1256770	Danio rerio Raw sequence reads	PRJNA1256770	Whole Genome Sequencing	Transcriptome sequencing was used to identify genes regulated by the polysaccharides that affect the immune activity of zebrafish.	Model organism or animal sample from Danio rerio	Zebrafish treatment with polysaccharides	strain:transgenic neutrophil green fluorescent MPX\|age:3 dpf\|dev stage:embryo\|collection date:2024 05 01\|geo loc name:China: Zhejiang\|sex:pooled male and female\|tissue:whole body\|disease:Immunosuppression\|MX:control sample\|P500:immune suppression model treated with 500 ug/mL polysaccharide\|P1000:immune suppression model treated with 1000 ug/mL polysaccharide\|P2000:immune suppression model treated with 2000 ug/mL polysaccharide\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: embryo whole body	MX 3	MX 3	Total RNA was extracted from zebrafish tissue using TRIzol reagent according to the manufacturer's protocol. RNA integrity was verified using an Agilent 2100 Bioanalyzer. mRNA was enriched using polyA selection and fragmented. First and second strand cDNA synthesis was performed followed by end repair A tailing and adapter ligation. The library was amplified by PCR and sequenced using the BGISEQ MGISEQ 2000RS platform with paired end 150 bp reads.	RNA-Seq	TRANSCRIPTOMIC	cDNA_randomPriming	PAIRED	BGISEQ	MGISEQ-2000RS	SRP589371	MX_3_1.fq.gz MX_3_2.fq.gz	fastq fastq	6795327600.0	22651092.0	MX 3 1.fq.gz	0:150 1:150	A:1768016462;C:1630727253;G:1632326554;T:1764257331;N:0	150	150	1768016462	1630727253	1632326554	1764257331	0	SRX29017793	SRS25233880	SRA2141272	West Anhui Universiaty\|College of Biotechnology and Pharmaceutical Engine	West Anhui Universiaty	B	B	biological fallback assumption	bgi	bgi	unknown	random_priming	unknown	bulk	unknown	unknown	China	2025-06-02	Larval	Larval	Trunk	Surface Structure
35988	35988	SRR33796125	SRX29017792	SRS25233880	SRP589371	PRJNA1256770	Danio rerio Raw sequence reads	PRJNA1256770	Whole Genome Sequencing	Transcriptome sequencing was used to identify genes regulated by the polysaccharides that affect the immune activity of zebrafish.	Model organism or animal sample from Danio rerio	Zebrafish treatment with polysaccharides	strain:transgenic neutrophil green fluorescent MPX\|age:3 dpf\|dev stage:embryo\|collection date:2024 05 01\|geo loc name:China: Zhejiang\|sex:pooled male and female\|tissue:whole body\|disease:Immunosuppression\|MX:control sample\|P500:immune suppression model treated with 500 ug/mL polysaccharide\|P1000:immune suppression model treated with 1000 ug/mL polysaccharide\|P2000:immune suppression model treated with 2000 ug/mL polysaccharide\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: embryo whole body	P2000 3	P2000 3	Total RNA was extracted from zebrafish tissue using TRIzol reagent according to the manufacturer's protocol. RNA integrity was verified using an Agilent 2100 Bioanalyzer. mRNA was enriched using polyA selection and fragmented. First and second strand cDNA synthesis was performed followed by end repair A tailing and adapter ligation. The library was amplified by PCR and sequenced using the BGISEQ MGISEQ 2000RS platform with paired end 150 bp reads.	RNA-Seq	TRANSCRIPTOMIC	cDNA_randomPriming	PAIRED	BGISEQ	MGISEQ-2000RS	SRP589371	P2000_3_1.fq.gz P2000_3_2.fq.gz	fastq fastq	6620786400.0	22069288.0	P2000 3 1.fq.gz	0:150 1:150	A:1736628496;C:1574653543;G:1577791512;T:1731712849;N:0	150	150	1736628496	1574653543	1577791512	1731712849	0	SRX29017792	SRS25233880	SRA2141272	West Anhui Universiaty\|College of Biotechnology and Pharmaceutical Engine	West Anhui Universiaty	B	B	biological fallback assumption	bgi	bgi	unknown	random_priming	unknown	bulk	unknown	unknown	China	2025-06-02	Larval	Larval	Trunk	Surface Structure
35989	35989	SRR33796126	SRX29017791	SRS25233880	SRP589371	PRJNA1256770	Danio rerio Raw sequence reads	PRJNA1256770	Whole Genome Sequencing	Transcriptome sequencing was used to identify genes regulated by the polysaccharides that affect the immune activity of zebrafish.	Model organism or animal sample from Danio rerio	Zebrafish treatment with polysaccharides	strain:transgenic neutrophil green fluorescent MPX\|age:3 dpf\|dev stage:embryo\|collection date:2024 05 01\|geo loc name:China: Zhejiang\|sex:pooled male and female\|tissue:whole body\|disease:Immunosuppression\|MX:control sample\|P500:immune suppression model treated with 500 ug/mL polysaccharide\|P1000:immune suppression model treated with 1000 ug/mL polysaccharide\|P2000:immune suppression model treated with 2000 ug/mL polysaccharide\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: embryo whole body	P2000 2	P2000 2	Total RNA was extracted from zebrafish tissue using TRIzol reagent according to the manufacturer's protocol. RNA integrity was verified using an Agilent 2100 Bioanalyzer. mRNA was enriched using polyA selection and fragmented. First and second strand cDNA synthesis was performed followed by end repair A tailing and adapter ligation. The library was amplified by PCR and sequenced using the BGISEQ MGISEQ 2000RS platform with paired end 150 bp reads.	RNA-Seq	TRANSCRIPTOMIC	cDNA_randomPriming	PAIRED	BGISEQ	MGISEQ-2000RS	SRP589371	P2000_2_1.fq.gz P2000_2_2.fq.gz	fastq fastq	6613914000.0	22046380.0	P2000 2 1.fq.gz	0:150 1:150	A:1733574880;C:1575483348;G:1576793005;T:1728062767;N:0	150	150	1733574880	1575483348	1576793005	1728062767	0	SRX29017791	SRS25233880	SRA2141272	West Anhui Universiaty\|College of Biotechnology and Pharmaceutical Engine	West Anhui Universiaty	B	B	biological fallback assumption	bgi	bgi	unknown	random_priming	unknown	bulk	unknown	unknown	China	2025-06-02	Larval	Larval	Trunk	Surface Structure
35990	35990	SRR33796127	SRX29017790	SRS25233880	SRP589371	PRJNA1256770	Danio rerio Raw sequence reads	PRJNA1256770	Whole Genome Sequencing	Transcriptome sequencing was used to identify genes regulated by the polysaccharides that affect the immune activity of zebrafish.	Model organism or animal sample from Danio rerio	Zebrafish treatment with polysaccharides	strain:transgenic neutrophil green fluorescent MPX\|age:3 dpf\|dev stage:embryo\|collection date:2024 05 01\|geo loc name:China: Zhejiang\|sex:pooled male and female\|tissue:whole body\|disease:Immunosuppression\|MX:control sample\|P500:immune suppression model treated with 500 ug/mL polysaccharide\|P1000:immune suppression model treated with 1000 ug/mL polysaccharide\|P2000:immune suppression model treated with 2000 ug/mL polysaccharide\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: embryo whole body	MX 2	MX 2	Total RNA was extracted from zebrafish tissue using TRIzol reagent according to the manufacturer's protocol. RNA integrity was verified using an Agilent 2100 Bioanalyzer. mRNA was enriched using polyA selection and fragmented. First and second strand cDNA synthesis was performed followed by end repair A tailing and adapter ligation. The library was amplified by PCR and sequenced using the BGISEQ MGISEQ 2000RS platform with paired end 150 bp reads.	RNA-Seq	TRANSCRIPTOMIC	cDNA_randomPriming	PAIRED	BGISEQ	MGISEQ-2000RS	SRP589371	MX_2_1.fq.gz MX_2_2.fq.gz	fastq fastq	6769929300.0	22566431.0	MX 2 1.fq.gz	0:150 1:150	A:1773923783;C:1611785261;G:1615111695;T:1769108561;N:0	150	150	1773923783	1611785261	1615111695	1769108561	0	SRX29017790	SRS25233880	SRA2141272	West Anhui Universiaty\|College of Biotechnology and Pharmaceutical Engine	West Anhui Universiaty	B	B	biological fallback assumption	bgi	bgi	unknown	random_priming	unknown	bulk	unknown	unknown	China	2025-06-02	Larval	Larval	Trunk	Surface Structure
35991	35991	SRR33796128	SRX29017789	SRS25233880	SRP589371	PRJNA1256770	Danio rerio Raw sequence reads	PRJNA1256770	Whole Genome Sequencing	Transcriptome sequencing was used to identify genes regulated by the polysaccharides that affect the immune activity of zebrafish.	Model organism or animal sample from Danio rerio	Zebrafish treatment with polysaccharides	strain:transgenic neutrophil green fluorescent MPX\|age:3 dpf\|dev stage:embryo\|collection date:2024 05 01\|geo loc name:China: Zhejiang\|sex:pooled male and female\|tissue:whole body\|disease:Immunosuppression\|MX:control sample\|P500:immune suppression model treated with 500 ug/mL polysaccharide\|P1000:immune suppression model treated with 1000 ug/mL polysaccharide\|P2000:immune suppression model treated with 2000 ug/mL polysaccharide\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: embryo whole body	MX 1	MX 1	Total RNA was extracted from zebrafish tissue using TRIzol reagent according to the manufacturer's protocol. RNA integrity was verified using an Agilent 2100 Bioanalyzer. mRNA was enriched using polyA selection and fragmented. First and second strand cDNA synthesis was performed followed by end repair A tailing and adapter ligation. The library was amplified by PCR and sequenced using the BGISEQ MGISEQ 2000RS platform with paired end 150 bp reads.	RNA-Seq	TRANSCRIPTOMIC	cDNA_randomPriming	PAIRED	BGISEQ	MGISEQ-2000RS	SRP589371	MX_1_1.fq.gz MX_1_2.fq.gz	fastq fastq	6715295400.0	22384318.0	MX 1 1.fq.gz	0:150 1:150	A:1774590051;C:1584963102;G:1587348964;T:1768393283;N:0	150	150	1774590051	1584963102	1587348964	1768393283	0	SRX29017789	SRS25233880	SRA2141272	West Anhui Universiaty\|College of Biotechnology and Pharmaceutical Engine	West Anhui Universiaty	B	B	biological fallback assumption	bgi	bgi	unknown	random_priming	unknown	bulk	unknown	unknown	China	2025-06-02	Larval	Larval	Trunk	Surface Structure

Advanced export

JSON shape: default, array, newline-delimited

CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;