metadata: run_metadata: 24 rows where experiment.library_selection = "cDNA_oligo_dT" and tissue_curation

24 rows where experiment.library_selection = "cDNA_oligo_dT" and tissue_curation_coarse = "Sensory System"

descending

Link	rowid ▼	run.accession	experiment.accession	sample.accession	study.accession	bioproject	study.title	study.alias	study.type	study.abstract	sample.title	sample.alias	sample.attributes	experiment.title	experiment.alias	experiment.library_name	experiment.design_description	experiment.library_strategy	experiment.library_source	experiment.library_selection	experiment.library_layout	experiment.platform	experiment.instrument_model	experiment.study_ref	run.filename	run.semantic_name	run.total_bases	run.total_spots	run.alias	run.read_lengths	run.base_counts	run.r1_length	run.r2_length	run.Acount	run.Ccount	run.Gcount	run.Tcount	run.Ncount	run.experiment	run.pool_member	submission.accession	submission.srasource	submission.bioprojectsource	seqdetective.n_mates	seqdetective.mapping_rate.mate1	seqdetective.mapping_rate.mate2	seqdetective.nofeature_rate.mate1	seqdetective.nofeature_rate.mate2	seqdetective.sparsity.mate1	seqdetective.sparsity.mate2	seqdetective.pos_strand_rate.mate1	seqdetective.pos_strand_rate.mate2	seqdetective.readlen.mate1	seqdetective.readlen.mate2	seqdetective.judgement.mate1	seqdetective.judgement.mate2	seqdetective.judgement.reason	platform_family	instrument_generation	read_bias	selection_class	prep_kit	sc_or_bulk	tech_class	technology	submission.bioprojectsource.country	earliest_date	devstage_curation	devstage_curation_coarse	tissue_curation	tissue_curation_coarse
33379	33379	SRR30184285	SRX25650011	SRS22293080	SRP525334	PRJNA1145997	Regulation of optic nerve regeneration by srebf2	PRJNA1145997	Other	Laser capture microdissection of the retinal ganglion cell layer followed by mRNA seq was used to measure differentially expressed genes in adult zebrafish at three days post optic nerve crush injury. Experimental groups include naive control nonspecific morpholino control morpholino mediated srebf2 gene knockdown nonspecific morpholino control plus daily heat shock in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish and morpholino mediated srebf2 gene knockdown in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish with daily heatshock. These data provide a resource to study the effects of srebf2 manipulation on transcriptomic responses to optic nerve injury in the adult zebrafish model.	cMO 2	wt cmo2 M	strain:wild type\|age:>3 month\|collection date:2023 11 06\|geo loc name:USA: Milwaukee WI\|sex:male\|tissue:retinal ganglion cell layer\|biomaterial provider:Matthew B. Veldman Medical College of Wisconsin\|treatment:cMO 2\|BioSampleModel:Model organism or animal	LCM seq of Danio rerio:retinal ganglion cell layer	L10	L10	LCM seq NucleoSpin RNA XS purified ultra low input RNAseq at Novogene	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP525334	L10_S128_L005_R2_001.fastq.gz L10_S128_L005_R1_001.fastq.gz	fastq fastq	20328275944.0	67312172.0	L10 S128 L005 R1 001.fastq.gz	0:151 1:151	A:5643585269;C:4447562096;G:4432908344;T:5802780590;N:1439645	151	151	5643585269	4447562096	4432908344	5802780590	1439645	SRX25650011	SRS22293080	SRA1943640	Medical College of Wisconsin\|Cell Biology, Neurobiology, and Anatomy	Medical College of Wisconsin	2	0.89472	0.89558	0.14231	0.14209	0.76359	0.76327	0.57442	0.57155	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2024-08-09	Adult	Adult	Eye	Sensory System
33380	33380	SRR30184286	SRX25650010	SRS22293078	SRP525334	PRJNA1145997	Regulation of optic nerve regeneration by srebf2	PRJNA1145997	Other	Laser capture microdissection of the retinal ganglion cell layer followed by mRNA seq was used to measure differentially expressed genes in adult zebrafish at three days post optic nerve crush injury. Experimental groups include naive control nonspecific morpholino control morpholino mediated srebf2 gene knockdown nonspecific morpholino control plus daily heat shock in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish and morpholino mediated srebf2 gene knockdown in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish with daily heatshock. These data provide a resource to study the effects of srebf2 manipulation on transcriptomic responses to optic nerve injury in the adult zebrafish model.	cMO 1	wt cmo1 M	strain:wild type\|age:>3 month\|collection date:2023 11 06\|geo loc name:USA: Milwaukee WI\|sex:male\|tissue:retinal ganglion cell layer\|biomaterial provider:Matthew B. Veldman Medical College of Wisconsin\|treatment:cMO 1\|BioSampleModel:Model organism or animal	LCM seq of Danio rerio:retinal ganglion cell layer	L09	L09	LCM seq NucleoSpin RNA XS purified ultra low input RNAseq at Novogene	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP525334	L09_S106_L004_R2_001.fastq.gz L09_S106_L004_R1_001.fastq.gz	fastq fastq	17931167252.0	59374726.0	L09 S106 L004 R1 001.fastq.gz	0:151 1:151	A:4724456408;C:4170780589;G:4192052775;T:4841803749;N:2073731	151	151	4724456408	4170780589	4192052775	4841803749	2073731	SRX25650010	SRS22293078	SRA1943640	Medical College of Wisconsin\|Cell Biology, Neurobiology, and Anatomy	Medical College of Wisconsin	2	0.92527	0.92522	0.05941	0.05976	0.76532	0.76583	0.55358	0.55497	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2024-08-09	Adult	Adult	Eye	Sensory System
33381	33381	SRR30184287	SRX25650009	SRS22293079	SRP525334	PRJNA1145997	Regulation of optic nerve regeneration by srebf2	PRJNA1145997	Other	Laser capture microdissection of the retinal ganglion cell layer followed by mRNA seq was used to measure differentially expressed genes in adult zebrafish at three days post optic nerve crush injury. Experimental groups include naive control nonspecific morpholino control morpholino mediated srebf2 gene knockdown nonspecific morpholino control plus daily heat shock in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish and morpholino mediated srebf2 gene knockdown in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish with daily heatshock. These data provide a resource to study the effects of srebf2 manipulation on transcriptomic responses to optic nerve injury in the adult zebrafish model.	3dpi 4	wt R2 F	strain:wild type\|age:>3 month\|collection date:2023 11 06\|geo loc name:USA: Milwaukee WI\|sex:female\|tissue:retinal ganglion cell layer\|biomaterial provider:Matthew B. Veldman Medical College of Wisconsin\|treatment:3dpi 4\|BioSampleModel:Model organism or animal	LCM seq of Danio rerio:retinal ganglion cell layer	L08	L08	LCM seq NucleoSpin RNA XS purified ultra low input RNAseq at Novogene	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP525334	L08_S127_L005_R2_001.fastq.gz L08_S127_L005_R1_001.fastq.gz	fastq fastq	22665495016.0	75051308.0	L08 S127 L005 R1 001.fastq.gz	0:151 1:151	A:6228385739;C:4990124759;G:4979460238;T:6465924079;N:1600201	151	151	6228385739	4990124759	4979460238	6465924079	1600201	SRX25650009	SRS22293079	SRA1943640	Medical College of Wisconsin\|Cell Biology, Neurobiology, and Anatomy	Medical College of Wisconsin	2	0.87648	0.87921	0.12966	0.13019	0.75627	0.75666	0.5783	0.5754	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2024-08-09	Adult	Adult	Eye	Sensory System
33382	33382	SRR30184288	SRX25650008	SRS22293077	SRP525334	PRJNA1145997	Regulation of optic nerve regeneration by srebf2	PRJNA1145997	Other	Laser capture microdissection of the retinal ganglion cell layer followed by mRNA seq was used to measure differentially expressed genes in adult zebrafish at three days post optic nerve crush injury. Experimental groups include naive control nonspecific morpholino control morpholino mediated srebf2 gene knockdown nonspecific morpholino control plus daily heat shock in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish and morpholino mediated srebf2 gene knockdown in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish with daily heatshock. These data provide a resource to study the effects of srebf2 manipulation on transcriptomic responses to optic nerve injury in the adult zebrafish model.	3dpi 3	wt R1 F	strain:wild type\|age:>3 month\|collection date:2023 11 06\|geo loc name:USA: Milwaukee WI\|sex:female\|tissue:retinal ganglion cell layer\|biomaterial provider:Matthew B. Veldman Medical College of Wisconsin\|treatment:3dpi 3\|BioSampleModel:Model organism or animal	LCM seq of Danio rerio:retinal ganglion cell layer	L07	L07	LCM seq NucleoSpin RNA XS purified ultra low input RNAseq at Novogene	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP525334	L07_S126_L005_R2_001.fastq.gz L07_S126_L005_R1_001.fastq.gz	fastq fastq	22406825976.0	74194788.0	L07 S126 L005 R1 001.fastq.gz	0:151 1:151	A:6090398182;C:4986126981;G:5056253833;T:6272474188;N:1572792	151	151	6090398182	4986126981	5056253833	6272474188	1572792	SRX25650008	SRS22293077	SRA1943640	Medical College of Wisconsin\|Cell Biology, Neurobiology, and Anatomy	Medical College of Wisconsin	2	0.9153	0.91559	0.10005	0.0998	0.74679	0.7469	0.53845	0.5395	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2024-08-09	Adult	Adult	Eye	Sensory System
33383	33383	SRR30184289	SRX25650007	SRS22293075	SRP525334	PRJNA1145997	Regulation of optic nerve regeneration by srebf2	PRJNA1145997	Other	Laser capture microdissection of the retinal ganglion cell layer followed by mRNA seq was used to measure differentially expressed genes in adult zebrafish at three days post optic nerve crush injury. Experimental groups include naive control nonspecific morpholino control morpholino mediated srebf2 gene knockdown nonspecific morpholino control plus daily heat shock in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish and morpholino mediated srebf2 gene knockdown in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish with daily heatshock. These data provide a resource to study the effects of srebf2 manipulation on transcriptomic responses to optic nerve injury in the adult zebrafish model.	3dpi 2	wt R2 M	strain:wild type\|age:>3 month\|collection date:2023 11 06\|geo loc name:USA: Milwaukee WI\|sex:male\|tissue:retinal ganglion cell layer\|biomaterial provider:Matthew B. Veldman Medical College of Wisconsin\|treatment:3dpi 2\|BioSampleModel:Model organism or animal	LCM seq of Danio rerio:retinal ganglion cell layer	L06	L06	LCM seq NucleoSpin RNA XS purified ultra low input RNAseq at Novogene	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP525334	L06_S125_L005_R2_001.fastq.gz L06_S125_L005_R1_001.fastq.gz	fastq fastq	21918766796.0	72578698.0	L06 S125 L005 R1 001.fastq.gz	0:151 1:151	A:6030044320;C:4788979368;G:4790388904;T:6307807807;N:1546397	151	151	6030044320	4788979368	4790388904	6307807807	1546397	SRX25650007	SRS22293075	SRA1943640	Medical College of Wisconsin\|Cell Biology, Neurobiology, and Anatomy	Medical College of Wisconsin	2	0.87272	0.87475	0.15184	0.15299	0.76777	0.76702	0.58094	0.57863	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2024-08-09	Adult	Adult	Eye	Sensory System
33384	33384	SRR30184290	SRX25650006	SRS22293076	SRP525334	PRJNA1145997	Regulation of optic nerve regeneration by srebf2	PRJNA1145997	Other	Laser capture microdissection of the retinal ganglion cell layer followed by mRNA seq was used to measure differentially expressed genes in adult zebrafish at three days post optic nerve crush injury. Experimental groups include naive control nonspecific morpholino control morpholino mediated srebf2 gene knockdown nonspecific morpholino control plus daily heat shock in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish and morpholino mediated srebf2 gene knockdown in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish with daily heatshock. These data provide a resource to study the effects of srebf2 manipulation on transcriptomic responses to optic nerve injury in the adult zebrafish model.	3dpi 1	wt R1 M	strain:wild type\|age:>3 month\|collection date:2023 11 06\|geo loc name:USA: Milwaukee WI\|sex:male\|tissue:retinal ganglion cell layer\|biomaterial provider:Matthew B. Veldman Medical College of Wisconsin\|treatment:3dpi 1\|BioSampleModel:Model organism or animal	LCM seq of Danio rerio:retinal ganglion cell layer	L05	L05	LCM seq NucleoSpin RNA XS purified ultra low input RNAseq at Novogene	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP525334	L05_S124_L005_R1_001.fastq.gz L05_S124_L005_R2_001.fastq.gz	fastq fastq	20254563180.0	67068090.0	L05 S124 L005 R1 001.fastq.gz	0:151 1:151	A:5433584775;C:4559357895;G:4610242789;T:5649933621;N:1444100	151	151	5433584775	4559357895	4610242789	5649933621	1444100	SRX25650006	SRS22293076	SRA1943640	Medical College of Wisconsin\|Cell Biology, Neurobiology, and Anatomy	Medical College of Wisconsin	2	0.90628	0.90764	0.08395	0.08422	0.7712	0.77086	0.5176	0.51705	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2024-08-09	Adult	Adult	Eye	Sensory System
33385	33385	SRR30184291	SRX25650005	SRS22293074	SRP525334	PRJNA1145997	Regulation of optic nerve regeneration by srebf2	PRJNA1145997	Other	Laser capture microdissection of the retinal ganglion cell layer followed by mRNA seq was used to measure differentially expressed genes in adult zebrafish at three days post optic nerve crush injury. Experimental groups include naive control nonspecific morpholino control morpholino mediated srebf2 gene knockdown nonspecific morpholino control plus daily heat shock in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish and morpholino mediated srebf2 gene knockdown in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish with daily heatshock. These data provide a resource to study the effects of srebf2 manipulation on transcriptomic responses to optic nerve injury in the adult zebrafish model.	uninjured 4	wt L2 F	strain:wild type\|age:>3 month\|collection date:2023 11 06\|geo loc name:USA: Milwaukee WI\|sex:female\|tissue:retinal ganglion cell layer\|biomaterial provider:Matthew B. Veldman Medical College of Wisconsin\|treatment:uninjured 4\|BioSampleModel:Model organism or animal	LCM seq of Danio rerio:retinal ganglion cell layer	L04	L04	LCM seq NucleoSpin RNA XS purified ultra low input RNAseq at Novogene	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP525334	L04_S142_L006_R2_001.fastq.gz L04_S142_L006_R1_001.fastq.gz	fastq fastq	29812977034.0	98718467.0	L04 S142 L006 R1 001.fastq.gz	0:151 1:151	A:8014887204;C:6674942655;G:6635556218;T:8483149485;N:4441472	151	151	8014887204	6674942655	6635556218	8483149485	4441472	SRX25650005	SRS22293074	SRA1943640	Medical College of Wisconsin\|Cell Biology, Neurobiology, and Anatomy	Medical College of Wisconsin	2	0.84638	0.84891	0.16019	0.1609	0.77737	0.77733	0.62585	0.63219	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2024-08-09	Adult	Adult	Eye	Sensory System
33386	33386	SRR30184292	SRX25650004	SRS22293073	SRP525334	PRJNA1145997	Regulation of optic nerve regeneration by srebf2	PRJNA1145997	Other	Laser capture microdissection of the retinal ganglion cell layer followed by mRNA seq was used to measure differentially expressed genes in adult zebrafish at three days post optic nerve crush injury. Experimental groups include naive control nonspecific morpholino control morpholino mediated srebf2 gene knockdown nonspecific morpholino control plus daily heat shock in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish and morpholino mediated srebf2 gene knockdown in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish with daily heatshock. These data provide a resource to study the effects of srebf2 manipulation on transcriptomic responses to optic nerve injury in the adult zebrafish model.	heatshock srebf2MO 4	hs smo2 F	strain:Tghsp70l:nSrebf2 2AmCherry cmcl2:EGFP\|age:>3 month\|collection date:2023 11 06\|geo loc name:USA: Milwaukee WI\|sex:female\|tissue:retinal ganglion cell layer\|biomaterial provider:Matthew B. Veldman Medical College of Wisconsin\|treatment:heatshock srebf2MO 4\|BioSampleModel:Model organism or animal	LCM seq of Danio rerio:retinal ganglion cell layer	L28	L28	LCM seq NucleoSpin RNA XS purified ultra low input RNAseq at Novogene	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP525334	L28_S116_L004_R2_001.fastq.gz L28_S116_L004_R1_001.fastq.gz	fastq fastq	17026943012.0	56380606.0	L28 S116 L004 R1 001.fastq.gz	0:151 1:151	A:4669306614;C:3826935006;G:3777947200;T:4750777220;N:1976972	151	151	4669306614	3826935006	3777947200	4750777220	1976972	SRX25650004	SRS22293073	SRA1943640	Medical College of Wisconsin\|Cell Biology, Neurobiology, and Anatomy	Medical College of Wisconsin	2	0.93284	0.93235	0.07802	0.07812	0.75568	0.75597	0.55431	0.54921	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2024-08-09	Adult	Adult	Eye	Sensory System
33387	33387	SRR30184293	SRX25650003	SRS22293072	SRP525334	PRJNA1145997	Regulation of optic nerve regeneration by srebf2	PRJNA1145997	Other	Laser capture microdissection of the retinal ganglion cell layer followed by mRNA seq was used to measure differentially expressed genes in adult zebrafish at three days post optic nerve crush injury. Experimental groups include naive control nonspecific morpholino control morpholino mediated srebf2 gene knockdown nonspecific morpholino control plus daily heat shock in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish and morpholino mediated srebf2 gene knockdown in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish with daily heatshock. These data provide a resource to study the effects of srebf2 manipulation on transcriptomic responses to optic nerve injury in the adult zebrafish model.	heatshock srebf2MO 3	hs smo1 F	strain:Tghsp70l:nSrebf2 2AmCherry cmcl2:EGFP\|age:>3 month\|collection date:2023 11 06\|geo loc name:USA: Milwaukee WI\|sex:female\|tissue:retinal ganglion cell layer\|biomaterial provider:Matthew B. Veldman Medical College of Wisconsin\|treatment:heatshock srebf2MO 3\|BioSampleModel:Model organism or animal	LCM seq of Danio rerio:retinal ganglion cell layer	L27	L27	LCM seq NucleoSpin RNA XS purified ultra low input RNAseq at Novogene	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP525334	L27_S115_L004_R2_001.fastq.gz L27_S115_L004_R1_001.fastq.gz	fastq fastq	22610315690.0	74868595.0	L27 S115 L004 R1 001.fastq.gz	0:151 1:151	A:6205491974;C:5075129196;G:4965212019;T:6361870398;N:2612103	151	151	6205491974	5075129196	4965212019	6361870398	2612103	SRX25650003	SRS22293072	SRA1943640	Medical College of Wisconsin\|Cell Biology, Neurobiology, and Anatomy	Medical College of Wisconsin	2	0.78769	0.78807	0.09282	0.09299	0.76619	0.7651	0.54884	0.5509	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2024-08-09	Adult	Adult	Eye	Sensory System
33388	33388	SRR30184294	SRX25650002	SRS22293071	SRP525334	PRJNA1145997	Regulation of optic nerve regeneration by srebf2	PRJNA1145997	Other	Laser capture microdissection of the retinal ganglion cell layer followed by mRNA seq was used to measure differentially expressed genes in adult zebrafish at three days post optic nerve crush injury. Experimental groups include naive control nonspecific morpholino control morpholino mediated srebf2 gene knockdown nonspecific morpholino control plus daily heat shock in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish and morpholino mediated srebf2 gene knockdown in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish with daily heatshock. These data provide a resource to study the effects of srebf2 manipulation on transcriptomic responses to optic nerve injury in the adult zebrafish model.	heatshock srebf2MO 2	hs smo2 M	strain:Tghsp70l:nSrebf2 2AmCherry cmcl2:EGFP\|age:>3 month\|collection date:2023 11 06\|geo loc name:USA: Milwaukee WI\|sex:male\|tissue:retinal ganglion cell layer\|biomaterial provider:Matthew B. Veldman Medical College of Wisconsin\|treatment:heatshock srebf2MO 2\|BioSampleModel:Model organism or animal	LCM seq of Danio rerio:retinal ganglion cell layer	L26	L26	LCM seq NucleoSpin RNA XS purified ultra low input RNAseq at Novogene	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP525334	L26_S144_L006_R2_001.fastq.gz L26_S144_L006_R1_001.fastq.gz	fastq fastq	17129465368.0	56720084.0	L26 S144 L006 R1 001.fastq.gz	0:151 1:151	A:4750698191;C:3734802838;G:3895289691;T:4746170435;N:2504213	151	151	4750698191	3734802838	3895289691	4746170435	2504213	SRX25650002	SRS22293071	SRA1943640	Medical College of Wisconsin\|Cell Biology, Neurobiology, and Anatomy	Medical College of Wisconsin	2	0.93654	0.92792	0.07609	0.07622	0.75061	0.75357	0.52583	0.53272	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2024-08-09	Adult	Adult	Eye	Sensory System
33389	33389	SRR30184295	SRX25650001	SRS22293070	SRP525334	PRJNA1145997	Regulation of optic nerve regeneration by srebf2	PRJNA1145997	Other	Laser capture microdissection of the retinal ganglion cell layer followed by mRNA seq was used to measure differentially expressed genes in adult zebrafish at three days post optic nerve crush injury. Experimental groups include naive control nonspecific morpholino control morpholino mediated srebf2 gene knockdown nonspecific morpholino control plus daily heat shock in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish and morpholino mediated srebf2 gene knockdown in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish with daily heatshock. These data provide a resource to study the effects of srebf2 manipulation on transcriptomic responses to optic nerve injury in the adult zebrafish model.	heatshock srebf2MO 1	hs smo1 M	strain:Tghsp70l:nSrebf2 2AmCherry cmcl2:EGFP\|age:>3 month\|collection date:2023 11 06\|geo loc name:USA: Milwaukee WI\|sex:male\|tissue:retinal ganglion cell layer\|biomaterial provider:Matthew B. Veldman Medical College of Wisconsin\|treatment:heatshock srebf2MO 1\|BioSampleModel:Model organism or animal	LCM seq of Danio rerio:retinal ganglion cell layer	L25	L25	LCM seq NucleoSpin RNA XS purified ultra low input RNAseq at Novogene	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP525334	L25_S114_L004_R2_001.fastq.gz L25_S114_L004_R1_001.fastq.gz	fastq fastq	18411870316.0	60966458.0	L25 S114 L004 R1 001.fastq.gz	0:151 1:151	A:5037571347;C:4144572498;G:4103153869;T:5124440844;N:2131758	151	151	5037571347	4144572498	4103153869	5124440844	2131758	SRX25650001	SRS22293070	SRA1943640	Medical College of Wisconsin\|Cell Biology, Neurobiology, and Anatomy	Medical College of Wisconsin	2	0.92822	0.92792	0.0886	0.08918	0.75974	0.75978	0.55638	0.55618	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2024-08-09	Adult	Adult	Eye	Sensory System
33390	33390	SRR30184296	SRX25650000	SRS22293066	SRP525334	PRJNA1145997	Regulation of optic nerve regeneration by srebf2	PRJNA1145997	Other	Laser capture microdissection of the retinal ganglion cell layer followed by mRNA seq was used to measure differentially expressed genes in adult zebrafish at three days post optic nerve crush injury. Experimental groups include naive control nonspecific morpholino control morpholino mediated srebf2 gene knockdown nonspecific morpholino control plus daily heat shock in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish and morpholino mediated srebf2 gene knockdown in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish with daily heatshock. These data provide a resource to study the effects of srebf2 manipulation on transcriptomic responses to optic nerve injury in the adult zebrafish model.	uninjured 3	wt L1 F	strain:wild type\|age:>3 month\|collection date:2023 11 06\|geo loc name:USA: Milwaukee WI\|sex:female\|tissue:retinal ganglion cell layer\|biomaterial provider:Matthew B. Veldman Medical College of Wisconsin\|treatment:uninjured 3\|BioSampleModel:Model organism or animal	LCM seq of Danio rerio:retinal ganglion cell layer	L03	L03	LCM seq NucleoSpin RNA XS purified ultra low input RNAseq at Novogene	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP525334	L03_S105_L004_R1_001.fastq.gz L03_S105_L004_R2_001.fastq.gz	fastq fastq	19718182792.0	65291996.0	L03 S105 L004 R1 001.fastq.gz	0:151 1:151	A:5247234351;C:4504410887;G:4526181297;T:5438074144;N:2282113	151	151	5247234351	4504410887	4526181297	5438074144	2282113	SRX25650000	SRS22293066	SRA1943640	Medical College of Wisconsin\|Cell Biology, Neurobiology, and Anatomy	Medical College of Wisconsin	2	0.90475	0.90699	0.11305	0.11331	0.75014	0.74929	0.52801	0.54316	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2024-08-09	Adult	Adult	Eye	Sensory System
33391	33391	SRR30184297	SRX25649999	SRS22293069	SRP525334	PRJNA1145997	Regulation of optic nerve regeneration by srebf2	PRJNA1145997	Other	Laser capture microdissection of the retinal ganglion cell layer followed by mRNA seq was used to measure differentially expressed genes in adult zebrafish at three days post optic nerve crush injury. Experimental groups include naive control nonspecific morpholino control morpholino mediated srebf2 gene knockdown nonspecific morpholino control plus daily heat shock in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish and morpholino mediated srebf2 gene knockdown in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish with daily heatshock. These data provide a resource to study the effects of srebf2 manipulation on transcriptomic responses to optic nerve injury in the adult zebrafish model.	heatshock cMO 4	hs cmo2 F	strain:Tghsp70l:nSrebf2 2AmCherry cmcl2:EGFP\|age:>3 month\|collection date:2023 11 06\|geo loc name:USA: Milwaukee WI\|sex:female\|tissue:retinal ganglion cell layer\|biomaterial provider:Matthew B. Veldman Medical College of Wisconsin\|treatment:heatshock cMO 4\|BioSampleModel:Model organism or animal	LCM seq of Danio rerio:retinal ganglion cell layer	L24	L24	LCM seq NucleoSpin RNA XS purified ultra low input RNAseq at Novogene	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP525334	L24_S134_L005_R2_001.fastq.gz L24_S134_L005_R1_001.fastq.gz	fastq fastq	19377661484.0	64164442.0	L24 S134 L005 R1 001.fastq.gz	0:151 1:151	A:5371834087;C:4284931090;G:4227428342;T:5492109103;N:1358862	151	151	5371834087	4284931090	4227428342	5492109103	1358862	SRX25649999	SRS22293069	SRA1943640	Medical College of Wisconsin\|Cell Biology, Neurobiology, and Anatomy	Medical College of Wisconsin	2	0.9104	0.90922	0.11083	0.11062	0.75325	0.7543	0.54602	0.54303	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2024-08-09	Adult	Adult	Eye	Sensory System
33392	33392	SRR30184298	SRX25649998	SRS22293067	SRP525334	PRJNA1145997	Regulation of optic nerve regeneration by srebf2	PRJNA1145997	Other	Laser capture microdissection of the retinal ganglion cell layer followed by mRNA seq was used to measure differentially expressed genes in adult zebrafish at three days post optic nerve crush injury. Experimental groups include naive control nonspecific morpholino control morpholino mediated srebf2 gene knockdown nonspecific morpholino control plus daily heat shock in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish and morpholino mediated srebf2 gene knockdown in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish with daily heatshock. These data provide a resource to study the effects of srebf2 manipulation on transcriptomic responses to optic nerve injury in the adult zebrafish model.	heatshock cMO 3	hs cmo1 F	strain:Tghsp70l:nSrebf2 2AmCherry cmcl2:EGFP\|age:>3 month\|collection date:2023 11 06\|geo loc name:USA: Milwaukee WI\|sex:female\|tissue:retinal ganglion cell layer\|biomaterial provider:Matthew B. Veldman Medical College of Wisconsin\|treatment:heatshock cMO 3\|BioSampleModel:Model organism or animal	LCM seq of Danio rerio:retinal ganglion cell layer	L23	L23	LCM seq NucleoSpin RNA XS purified ultra low input RNAseq at Novogene	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP525334	L23_S143_L006_R2_001.fastq.gz L23_S143_L006_R1_001.fastq.gz	fastq fastq	28079439956.0	92978278.0	L23 S143 L006 R1 001.fastq.gz	0:151 1:151	A:7811720040;C:6084170964;G:6064272363;T:8115079585;N:4197004	151	151	7811720040	6084170964	6064272363	8115079585	4197004	SRX25649998	SRS22293067	SRA1943640	Medical College of Wisconsin\|Cell Biology, Neurobiology, and Anatomy	Medical College of Wisconsin	2	0.86593	0.86525	0.14584	0.14587	0.77498	0.77433	0.59534	0.59433	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2024-08-09	Adult	Adult	Eye	Sensory System
33393	33393	SRR30184299	SRX25649997	SRS22293068	SRP525334	PRJNA1145997	Regulation of optic nerve regeneration by srebf2	PRJNA1145997	Other	Laser capture microdissection of the retinal ganglion cell layer followed by mRNA seq was used to measure differentially expressed genes in adult zebrafish at three days post optic nerve crush injury. Experimental groups include naive control nonspecific morpholino control morpholino mediated srebf2 gene knockdown nonspecific morpholino control plus daily heat shock in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish and morpholino mediated srebf2 gene knockdown in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish with daily heatshock. These data provide a resource to study the effects of srebf2 manipulation on transcriptomic responses to optic nerve injury in the adult zebrafish model.	heatshock cMO 2	hs cmo2 M	strain:Tghsp70l:nSrebf2 2AmCherry cmcl2:EGFP\|age:>3 month\|collection date:2023 11 06\|geo loc name:USA: Milwaukee WI\|sex:male\|tissue:retinal ganglion cell layer\|biomaterial provider:Matthew B. Veldman Medical College of Wisconsin\|treatment:heatshock cMO 2\|BioSampleModel:Model organism or animal	LCM seq of Danio rerio:retinal ganglion cell layer	L22	L22	LCM seq NucleoSpin RNA XS purified ultra low input RNAseq at Novogene	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP525334	L22_S133_L005_R2_001.fastq.gz L22_S133_L005_R1_001.fastq.gz	fastq fastq	20494382588.0	67862194.0	L22 S133 L005 R1 001.fastq.gz	0:151 1:151	A:5610165229;C:4583590395;G:4590759271;T:5708435247;N:1432446	151	151	5610165229	4583590395	4590759271	5708435247	1432446	SRX25649997	SRS22293068	SRA1943640	Medical College of Wisconsin\|Cell Biology, Neurobiology, and Anatomy	Medical College of Wisconsin	2	0.92306	0.92279	0.0879	0.08765	0.7671	0.76579	0.56402	0.56401	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2024-08-09	Adult	Adult	Eye	Sensory System
33394	33394	SRR30184300	SRX25649996	SRS22293064	SRP525334	PRJNA1145997	Regulation of optic nerve regeneration by srebf2	PRJNA1145997	Other	Laser capture microdissection of the retinal ganglion cell layer followed by mRNA seq was used to measure differentially expressed genes in adult zebrafish at three days post optic nerve crush injury. Experimental groups include naive control nonspecific morpholino control morpholino mediated srebf2 gene knockdown nonspecific morpholino control plus daily heat shock in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish and morpholino mediated srebf2 gene knockdown in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish with daily heatshock. These data provide a resource to study the effects of srebf2 manipulation on transcriptomic responses to optic nerve injury in the adult zebrafish model.	heatshock cMO 1	hs cmo1 M	strain:Tghsp70l:nSrebf2 2AmCherry cmcl2:EGFP\|age:>3 month\|collection date:2023 11 06\|geo loc name:USA: Milwaukee WI\|sex:male\|tissue:retinal ganglion cell layer\|biomaterial provider:Matthew B. Veldman Medical College of Wisconsin\|treatment:heatshock cMO 1\|BioSampleModel:Model organism or animal	LCM seq of Danio rerio:retinal ganglion cell layer	L21	L21	LCM seq NucleoSpin RNA XS purified ultra low input RNAseq at Novogene	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP525334	L21_S113_L004_R1_001.fastq.gz L21_S113_L004_R2_001.fastq.gz	fastq fastq	22282038670.0	73781585.0	L21 S113 L004 R1 001.fastq.gz	0:151 1:151	A:5984432885;C:5103219794;G:5123288852;T:6068507910;N:2589229	151	151	5984432885	5103219794	5123288852	6068507910	2589229	SRX25649996	SRS22293064	SRA1943640	Medical College of Wisconsin\|Cell Biology, Neurobiology, and Anatomy	Medical College of Wisconsin	2	0.93523	0.93442	0.06557	0.06558	0.76463	0.76532	0.54365	0.53711	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2024-08-09	Adult	Adult	Eye	Sensory System
33395	33395	SRR30184301	SRX25649995	SRS22293061	SRP525334	PRJNA1145997	Regulation of optic nerve regeneration by srebf2	PRJNA1145997	Other	Laser capture microdissection of the retinal ganglion cell layer followed by mRNA seq was used to measure differentially expressed genes in adult zebrafish at three days post optic nerve crush injury. Experimental groups include naive control nonspecific morpholino control morpholino mediated srebf2 gene knockdown nonspecific morpholino control plus daily heat shock in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish and morpholino mediated srebf2 gene knockdown in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish with daily heatshock. These data provide a resource to study the effects of srebf2 manipulation on transcriptomic responses to optic nerve injury in the adult zebrafish model.	srebf2MO 4	wt smo2 F	strain:wild type\|age:>3 month\|collection date:2023 11 06\|geo loc name:USA: Milwaukee WI\|sex:female\|tissue:retinal ganglion cell layer\|biomaterial provider:Matthew B. Veldman Medical College of Wisconsin\|treatment:srebf2MO 4\|BioSampleModel:Model organism or animal	LCM seq of Danio rerio:retinal ganglion cell layer	L16	L16	LCM seq NucleoSpin RNA XS purified ultra low input RNAseq at Novogene	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP525334	L16_S108_L004_R1_001.fastq.gz L16_S108_L004_R2_001.fastq.gz	fastq fastq	25364244630.0	83987565.0	L16 S108 L004 R1 001.fastq.gz	0:151 1:151	A:6783811492;C:5825885841;G:5791188806;T:6960421955;N:2936536	151	151	6783811492	5825885841	5791188806	6960421955	2936536	SRX25649995	SRS22293061	SRA1943640	Medical College of Wisconsin\|Cell Biology, Neurobiology, and Anatomy	Medical College of Wisconsin	2	0.93174	0.93131	0.06871	0.06898	0.75461	0.75386	0.54103	0.54073	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2024-08-09	Adult	Adult	Eye	Sensory System
33396	33396	SRR30184302	SRX25649994	SRS22293065	SRP525334	PRJNA1145997	Regulation of optic nerve regeneration by srebf2	PRJNA1145997	Other	Laser capture microdissection of the retinal ganglion cell layer followed by mRNA seq was used to measure differentially expressed genes in adult zebrafish at three days post optic nerve crush injury. Experimental groups include naive control nonspecific morpholino control morpholino mediated srebf2 gene knockdown nonspecific morpholino control plus daily heat shock in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish and morpholino mediated srebf2 gene knockdown in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish with daily heatshock. These data provide a resource to study the effects of srebf2 manipulation on transcriptomic responses to optic nerve injury in the adult zebrafish model.	srebf2MO 3	wt smo1 F	strain:wild type\|age:>3 month\|collection date:2023 11 06\|geo loc name:USA: Milwaukee WI\|sex:female\|tissue:retinal ganglion cell layer\|biomaterial provider:Matthew B. Veldman Medical College of Wisconsin\|treatment:srebf2MO 3\|BioSampleModel:Model organism or animal	LCM seq of Danio rerio:retinal ganglion cell layer	L15	L15	LCM seq NucleoSpin RNA XS purified ultra low input RNAseq at Novogene	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP525334	L15_S132_L005_R2_001.fastq.gz L15_S132_L005_R1_001.fastq.gz	fastq fastq	24643120876.0	81599738.0	L15 S132 L005 R1 001.fastq.gz	0:151 1:151	A:6791560596;C:5441282614;G:5412453327;T:6996084050;N:1740289	151	151	6791560596	5441282614	5412453327	6996084050	1740289	SRX25649994	SRS22293065	SRA1943640	Medical College of Wisconsin\|Cell Biology, Neurobiology, and Anatomy	Medical College of Wisconsin	2	0.90806	0.90874	0.11049	0.11033	0.75885	0.75741	0.54345	0.55215	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2024-08-09	Adult	Adult	Eye	Sensory System
33397	33397	SRR30184303	SRX25649993	SRS22293062	SRP525334	PRJNA1145997	Regulation of optic nerve regeneration by srebf2	PRJNA1145997	Other	Laser capture microdissection of the retinal ganglion cell layer followed by mRNA seq was used to measure differentially expressed genes in adult zebrafish at three days post optic nerve crush injury. Experimental groups include naive control nonspecific morpholino control morpholino mediated srebf2 gene knockdown nonspecific morpholino control plus daily heat shock in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish and morpholino mediated srebf2 gene knockdown in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish with daily heatshock. These data provide a resource to study the effects of srebf2 manipulation on transcriptomic responses to optic nerve injury in the adult zebrafish model.	srebf2MO 2	wt smo2 M	strain:wild type\|age:>3 month\|collection date:2023 11 06\|geo loc name:USA: Milwaukee WI\|sex:male\|tissue:retinal ganglion cell layer\|biomaterial provider:Matthew B. Veldman Medical College of Wisconsin\|treatment:srebf2MO 2\|BioSampleModel:Model organism or animal	LCM seq of Danio rerio:retinal ganglion cell layer	L14	L14	LCM seq NucleoSpin RNA XS purified ultra low input RNAseq at Novogene	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP525334	L14_S131_L005_R2_001.fastq.gz L14_S131_L005_R1_001.fastq.gz	fastq fastq	20984328060.0	69484530.0	L14 S131 L005 R1 001.fastq.gz	0:151 1:151	A:5728503785;C:4710613293;G:4687638412;T:5856111147;N:1461423	151	151	5728503785	4710613293	4687638412	5856111147	1461423	SRX25649993	SRS22293062	SRA1943640	Medical College of Wisconsin\|Cell Biology, Neurobiology, and Anatomy	Medical College of Wisconsin	2	0.92516	0.92471	0.08416	0.08435	0.76568	0.76585	0.56286	0.56146	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2024-08-09	Adult	Adult	Eye	Sensory System
33398	33398	SRR30184304	SRX25649992	SRS22293059	SRP525334	PRJNA1145997	Regulation of optic nerve regeneration by srebf2	PRJNA1145997	Other	Laser capture microdissection of the retinal ganglion cell layer followed by mRNA seq was used to measure differentially expressed genes in adult zebrafish at three days post optic nerve crush injury. Experimental groups include naive control nonspecific morpholino control morpholino mediated srebf2 gene knockdown nonspecific morpholino control plus daily heat shock in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish and morpholino mediated srebf2 gene knockdown in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish with daily heatshock. These data provide a resource to study the effects of srebf2 manipulation on transcriptomic responses to optic nerve injury in the adult zebrafish model.	srebf2MO 1	wt smo1 M	strain:wild type\|age:>3 month\|collection date:2023 11 06\|geo loc name:USA: Milwaukee WI\|sex:male\|tissue:retinal ganglion cell layer\|biomaterial provider:Matthew B. Veldman Medical College of Wisconsin\|treatment:srebf2MO 1\|BioSampleModel:Model organism or animal	LCM seq of Danio rerio:retinal ganglion cell layer	L13	L13	LCM seq NucleoSpin RNA XS purified ultra low input RNAseq at Novogene	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP525334	L13_S130_L005_R1_001.fastq.gz L13_S130_L005_R2_001.fastq.gz	fastq fastq	17976563590.0	59525045.0	L13 S130 L005 R1 001.fastq.gz	0:151 1:151	A:4931490430;C:3978811459;G:3956968246;T:5108014615;N:1278840	151	151	4931490430	3978811459	3956968246	5108014615	1278840	SRX25649992	SRS22293059	SRA1943640	Medical College of Wisconsin\|Cell Biology, Neurobiology, and Anatomy	Medical College of Wisconsin	2	0.8948	0.89491	0.13113	0.13061	0.76254	0.76246	0.57407	0.57069	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2024-08-09	Adult	Adult	Eye	Sensory System
33399	33399	SRR30184305	SRX25649991	SRS22293060	SRP525334	PRJNA1145997	Regulation of optic nerve regeneration by srebf2	PRJNA1145997	Other	Laser capture microdissection of the retinal ganglion cell layer followed by mRNA seq was used to measure differentially expressed genes in adult zebrafish at three days post optic nerve crush injury. Experimental groups include naive control nonspecific morpholino control morpholino mediated srebf2 gene knockdown nonspecific morpholino control plus daily heat shock in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish and morpholino mediated srebf2 gene knockdown in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish with daily heatshock. These data provide a resource to study the effects of srebf2 manipulation on transcriptomic responses to optic nerve injury in the adult zebrafish model.	cMO 4	wt cmo2 F	strain:wild type\|age:>3 month\|collection date:2023 11 06\|geo loc name:USA: Milwaukee WI\|sex:female\|tissue:retinal ganglion cell layer\|biomaterial provider:Matthew B. Veldman Medical College of Wisconsin\|treatment:cMO 4\|BioSampleModel:Model organism or animal	LCM seq of Danio rerio:retinal ganglion cell layer	L12	L12	LCM seq NucleoSpin RNA XS purified ultra low input RNAseq at Novogene	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP525334	L12_S129_L005_R2_001.fastq.gz L12_S129_L005_R1_001.fastq.gz	fastq fastq	19905894214.0	65913557.0	L12 S129 L005 R1 001.fastq.gz	0:151 1:151	A:5382577098;C:4496451576;G:4493042842;T:5532424959;N:1397739	151	151	5382577098	4496451576	4493042842	5532424959	1397739	SRX25649991	SRS22293060	SRA1943640	Medical College of Wisconsin\|Cell Biology, Neurobiology, and Anatomy	Medical College of Wisconsin	2	0.9238	0.92347	0.08792	0.08777	0.75933	0.75921	0.56478	0.567	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2024-08-09	Adult	Adult	Eye	Sensory System
33400	33400	SRR30184306	SRX25649990	SRS22293063	SRP525334	PRJNA1145997	Regulation of optic nerve regeneration by srebf2	PRJNA1145997	Other	Laser capture microdissection of the retinal ganglion cell layer followed by mRNA seq was used to measure differentially expressed genes in adult zebrafish at three days post optic nerve crush injury. Experimental groups include naive control nonspecific morpholino control morpholino mediated srebf2 gene knockdown nonspecific morpholino control plus daily heat shock in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish and morpholino mediated srebf2 gene knockdown in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish with daily heatshock. These data provide a resource to study the effects of srebf2 manipulation on transcriptomic responses to optic nerve injury in the adult zebrafish model.	cMO 3	wt cmo1 F	strain:wild type\|age:>3 month\|collection date:2023 11 06\|geo loc name:USA: Milwaukee WI\|sex:female\|tissue:retinal ganglion cell layer\|biomaterial provider:Matthew B. Veldman Medical College of Wisconsin\|treatment:cMO 3\|BioSampleModel:Model organism or animal	LCM seq of Danio rerio:retinal ganglion cell layer	L11	L11	LCM seq NucleoSpin RNA XS purified ultra low input RNAseq at Novogene	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP525334	L11_S107_L004_R1_001.fastq.gz L11_S107_L004_R2_001.fastq.gz	fastq fastq	17297093488.0	57275144.0	L11 S107 L004 R1 001.fastq.gz	0:151 1:151	A:4727002988;C:3860128821;G:3837802284;T:4870157333;N:2002062	151	151	4727002988	3860128821	3837802284	4870157333	2002062	SRX25649990	SRS22293063	SRA1943640	Medical College of Wisconsin\|Cell Biology, Neurobiology, and Anatomy	Medical College of Wisconsin	2	0.86746	0.86798	0.10604	0.1069	0.76396	0.7639	0.56148	0.55457	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2024-08-09	Adult	Adult	Eye	Sensory System
33401	33401	SRR30184307	SRX25649989	SRS22293058	SRP525334	PRJNA1145997	Regulation of optic nerve regeneration by srebf2	PRJNA1145997	Other	Laser capture microdissection of the retinal ganglion cell layer followed by mRNA seq was used to measure differentially expressed genes in adult zebrafish at three days post optic nerve crush injury. Experimental groups include naive control nonspecific morpholino control morpholino mediated srebf2 gene knockdown nonspecific morpholino control plus daily heat shock in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish and morpholino mediated srebf2 gene knockdown in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish with daily heatshock. These data provide a resource to study the effects of srebf2 manipulation on transcriptomic responses to optic nerve injury in the adult zebrafish model.	uninjured 2	wt L2 M	strain:wild type\|age:>3 month\|collection date:2023 11 06\|geo loc name:USA: Milwaukee WI\|sex:male\|tissue:retinal ganglion cell layer\|biomaterial provider:Matthew B. Veldman Medical College of Wisconsin\|treatment:uninjured 2\|BioSampleModel:Model organism or animal	LCM seq of Danio rerio:retinal ganglion cell layer	L02	L02	LCM seq NucleoSpin RNA XS purified ultra low input RNAseq at Novogene	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP525334	L02_S141_L006_R2_001.fastq.gz L02_S141_L006_R1_001.fastq.gz	fastq fastq	24399093702.0	80791701.0	L02 S141 L006 R1 001.fastq.gz	0:151 1:151	A:6567405598;C:5419524814;G:5626869131;T:6781638199;N:3655960	151	151	6567405598	5419524814	5626869131	6781638199	3655960	SRX25649989	SRS22293058	SRA1943640	Medical College of Wisconsin\|Cell Biology, Neurobiology, and Anatomy	Medical College of Wisconsin	2	0.88324	0.88428	0.12546	0.12616	0.77141	0.77021	0.58483	0.58455	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2024-08-09	Adult	Adult	Eye	Sensory System
33402	33402	SRR30184308	SRX25649988	SRS22293057	SRP525334	PRJNA1145997	Regulation of optic nerve regeneration by srebf2	PRJNA1145997	Other	Laser capture microdissection of the retinal ganglion cell layer followed by mRNA seq was used to measure differentially expressed genes in adult zebrafish at three days post optic nerve crush injury. Experimental groups include naive control nonspecific morpholino control morpholino mediated srebf2 gene knockdown nonspecific morpholino control plus daily heat shock in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish and morpholino mediated srebf2 gene knockdown in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish with daily heatshock. These data provide a resource to study the effects of srebf2 manipulation on transcriptomic responses to optic nerve injury in the adult zebrafish model.	uninjured 1	wt L1 M	strain:wild type\|age:>3 month\|collection date:2023 11 06\|geo loc name:USA: Milwaukee WI\|sex:male\|tissue:retinal ganglion cell layer\|biomaterial provider:Matthew B. Veldman Medical College of Wisconsin\|treatment:uninjured 1\|BioSampleModel:Model organism or animal	LCM seq of Danio rerio:retinal ganglion cell layer	L01	L01	LCM seq NucleoSpin RNA XS purified ultra low input RNAseq at Novogene	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP525334	L01_S123_L005_R2_001.fastq.gz L01_S123_L005_R1_001.fastq.gz	fastq fastq	17596481188.0	58266494.0	L01 S123 L005 R1 001.fastq.gz	0:151 1:151	A:4773806012;C:3941529807;G:3951952531;T:4927955026;N:1237812	151	151	4773806012	3941529807	3951952531	4927955026	1237812	SRX25649988	SRS22293057	SRA1943640	Medical College of Wisconsin\|Cell Biology, Neurobiology, and Anatomy	Medical College of Wisconsin	2	0.9124	0.91249	0.10052	0.10034	0.76751	0.76773	0.58532	0.58581	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2024-08-09	Adult	Adult	Eye	Sensory System

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;