metadata: run_metadata: 57 rows where experiment.library_selection = "cDNA_oligo_dT", experiment.library_source = "TRANSCRIPTOMIC" and technology = "unknown"

57 rows where experiment.library_selection = "cDNA_oligo_dT", experiment.library_source = "TRANSCRIPTOMIC" and technology = "unknown"

descending

Link	rowid ▼	run.accession	experiment.accession	sample.accession	study.accession	bioproject	study.title	study.alias	study.type	study.abstract	sample.description	sample.title	sample.alias	sample.attributes	experiment.title	experiment.alias	experiment.library_name	experiment.design_description	experiment.library_strategy	experiment.library_source	experiment.library_selection	experiment.library_layout	experiment.platform	experiment.instrument_model	experiment.study_ref	run.filename	run.semantic_name	run.total_bases	run.total_spots	run.alias	run.read_lengths	run.base_counts	run.r1_length	run.r2_length	run.Acount	run.Ccount	run.Gcount	run.Tcount	run.Ncount	run.experiment	run.pool_member	submission.accession	submission.srasource	submission.bioprojectsource	seqdetective.n_mates	seqdetective.mapping_rate.mate1	seqdetective.mapping_rate.mate2	seqdetective.nofeature_rate.mate1	seqdetective.nofeature_rate.mate2	seqdetective.sparsity.mate1	seqdetective.sparsity.mate2	seqdetective.pos_strand_rate.mate1	seqdetective.pos_strand_rate.mate2	seqdetective.readlen.mate1	seqdetective.readlen.mate2	seqdetective.judgement.mate1	seqdetective.judgement.mate2	seqdetective.judgement.reason	platform_family	instrument_generation	read_bias	selection_class	prep_kit	sc_or_bulk	tech_class	technology	submission.bioprojectsource.country	earliest_date	devstage_curation	devstage_curation_coarse	tissue_curation	tissue_curation_coarse
32107	32107	SRR29012733	SRX24539435	SRS21284312	SRP507393	PRJNA1111146	RNA seq of adult zebrafish brain following traumatic brain injury and/or ISRIB exposure	PRJNA1111146	Other	Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C traumatic brain injury TBI; T ISRIB injection I TBI and ISRIB injection TI.			I3 TK13	strain:Wild type\|age:5 month\|collection date:2023 08 20\|geo loc name:Russia\|sex:NA\|tissue:brain\|sample type:I3 TK13\|treatment:ISRIB\|BioSampleModel:Model organism or animal	Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C traumatic brain injury TBI; T ISRIB injection I TBI and ISRIB injection TI.	TK13	TK13	RNA isolation was performed using the ExtractRNA reagent following the standard protocol for TriZol mediated extraction. The RNA quality was checked by capillary electrophoresis using the QIAxcel Advanced program. Total RNA was used for isolation of polyA fraction using NEBNext PolyA mRNA Magnetic Isolation Module according to the manufacturer's recommendations. RNA was next quantified on Quntus fluorometer and used for library preparation using NEBNext UltraTM Directional RNA Library PrepKit for Illumina with NEBNext Multiplex Oligos for Illumina according to the manufacturer's recommendations. The quality of libraries was confirmed by capillary electrophoresis using the QIAxcel Advanced program. Pair end sequencing was performed using Illumina HiSeq2500 with a read length of 110 bp.	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina HiSeq 2500	SRP507393	I3-TK13_S9_R1_001.fastq.gz I3-TK13_S9_R2_001.fastq.gz	fastq fastq	1951476351.0	9046948.0	I3 TK13 S9 R1 001.fastq.gz	0:107.84 1:107.86	A:532508211;C:436986899;G:434983140;T:539541026;N:7457075	107	107	532508211	436986899	434983140	539541026	7457075	SRX24539435	SRS21284312	SRA1865594	Sirius University of Science and Technology\|Genetics and Life Science	Sirius University of Science and Technology												B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	nebnext	bulk	unknown	unknown	Russia	2024-05-13	Adult	Adult	Brain	Nervous System
32108	32108	SRR29012734	SRX24539434	SRS21284311	SRP507393	PRJNA1111146	RNA seq of adult zebrafish brain following traumatic brain injury and/or ISRIB exposure	PRJNA1111146	Other	Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C traumatic brain injury TBI; T ISRIB injection I TBI and ISRIB injection TI.			I2 TK12	strain:Wild type\|age:5 month\|collection date:2023 08 20\|geo loc name:Russia\|sex:NA\|tissue:brain\|sample type:I2 TK12\|treatment:ISRIB\|BioSampleModel:Model organism or animal	Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C traumatic brain injury TBI; T ISRIB injection I TBI and ISRIB injection TI.	TK12	TK12	RNA isolation was performed using the ExtractRNA reagent following the standard protocol for TriZol mediated extraction. The RNA quality was checked by capillary electrophoresis using the QIAxcel Advanced program. Total RNA was used for isolation of polyA fraction using NEBNext PolyA mRNA Magnetic Isolation Module according to the manufacturer's recommendations. RNA was next quantified on Quntus fluorometer and used for library preparation using NEBNext UltraTM Directional RNA Library PrepKit for Illumina with NEBNext Multiplex Oligos for Illumina according to the manufacturer's recommendations. The quality of libraries was confirmed by capillary electrophoresis using the QIAxcel Advanced program. Pair end sequencing was performed using Illumina HiSeq2500 with a read length of 110 bp.	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina HiSeq 2500	SRP507393	I2-TK12_S8_R1_001.fastq.gz I2-TK12_S8_R2_001.fastq.gz	fastq fastq	2483693754.0	11573280.0	I2 TK12 S8 R1 001.fastq.gz	0:107.28 1:107.32	A:690681797;C:542407183;G:537633561;T:698259696;N:14711517	107	107	690681797	542407183	537633561	698259696	14711517	SRX24539434	SRS21284311	SRA1865594	Sirius University of Science and Technology\|Genetics and Life Science	Sirius University of Science and Technology												B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	nebnext	bulk	unknown	unknown	Russia	2024-05-13	Adult	Adult	Brain	Nervous System
32109	32109	SRR29012735	SRX24539433	SRS21284310	SRP507393	PRJNA1111146	RNA seq of adult zebrafish brain following traumatic brain injury and/or ISRIB exposure	PRJNA1111146	Other	Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C traumatic brain injury TBI; T ISRIB injection I TBI and ISRIB injection TI.			C9 TK39	strain:Wild type\|age:5 month\|collection date:2023 08 20\|geo loc name:Russia\|sex:NA\|tissue:brain\|sample type:C9 TK39\|treatment:Control\|BioSampleModel:Model organism or animal	Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C traumatic brain injury TBI; T ISRIB injection I TBI and ISRIB injection TI.	TK39	TK39	RNA isolation was performed using the ExtractRNA reagent following the standard protocol for TriZol mediated extraction. The RNA quality was checked by capillary electrophoresis using the QIAxcel Advanced program. Total RNA was used for isolation of polyA fraction using NEBNext PolyA mRNA Magnetic Isolation Module according to the manufacturer's recommendations. RNA was next quantified on Quntus fluorometer and used for library preparation using NEBNext UltraTM Directional RNA Library PrepKit for Illumina with NEBNext Multiplex Oligos for Illumina according to the manufacturer's recommendations. The quality of libraries was confirmed by capillary electrophoresis using the QIAxcel Advanced program. Pair end sequencing was performed using Illumina HiSeq2500 with a read length of 110 bp.	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina HiSeq 2500	SRP507393	C9-TK39_S27_R1_001.fastq.gz C9-TK39_S27_R2_001.fastq.gz	fastq fastq	2370365419.0	11054395.0	C9 TK39 S27 R1 001.fastq.gz	0:107.19 1:107.24	A:638716678;C:538512113;G:535138614;T:642111655;N:15886359	107	107	638716678	538512113	535138614	642111655	15886359	SRX24539433	SRS21284310	SRA1865594	Sirius University of Science and Technology\|Genetics and Life Science	Sirius University of Science and Technology												B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	nebnext	bulk	unknown	unknown	Russia	2024-05-13	Adult	Adult	Brain	Nervous System
32110	32110	SRR29012736	SRX24539432	SRS21284309	SRP507393	PRJNA1111146	RNA seq of adult zebrafish brain following traumatic brain injury and/or ISRIB exposure	PRJNA1111146	Other	Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C traumatic brain injury TBI; T ISRIB injection I TBI and ISRIB injection TI.			C8 TK38	strain:Wild type\|age:5 month\|collection date:2023 08 20\|geo loc name:Russia\|sex:NA\|tissue:brain\|sample type:C8 TK38\|treatment:Control\|BioSampleModel:Model organism or animal	Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C traumatic brain injury TBI; T ISRIB injection I TBI and ISRIB injection TI.	TK38	TK38	RNA isolation was performed using the ExtractRNA reagent following the standard protocol for TriZol mediated extraction. The RNA quality was checked by capillary electrophoresis using the QIAxcel Advanced program. Total RNA was used for isolation of polyA fraction using NEBNext PolyA mRNA Magnetic Isolation Module according to the manufacturer's recommendations. RNA was next quantified on Quntus fluorometer and used for library preparation using NEBNext UltraTM Directional RNA Library PrepKit for Illumina with NEBNext Multiplex Oligos for Illumina according to the manufacturer's recommendations. The quality of libraries was confirmed by capillary electrophoresis using the QIAxcel Advanced program. Pair end sequencing was performed using Illumina HiSeq2500 with a read length of 110 bp.	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina HiSeq 2500	SRP507393	C8-TK38_S26_R1_001.fastq.gz C8-TK38_S26_R2_001.fastq.gz	fastq fastq	2329920345.0	10848811.0	C8 TK38 S26 R1 001.fastq.gz	0:107.36 1:107.40	A:628958466;C:528866941;G:524557104;T:634765152;N:12772682	107	107	628958466	528866941	524557104	634765152	12772682	SRX24539432	SRS21284309	SRA1865594	Sirius University of Science and Technology\|Genetics and Life Science	Sirius University of Science and Technology												B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	nebnext	bulk	unknown	unknown	Russia	2024-05-13	Adult	Adult	Brain	Nervous System
32111	32111	SRR29012737	SRX24539431	SRS21284308	SRP507393	PRJNA1111146	RNA seq of adult zebrafish brain following traumatic brain injury and/or ISRIB exposure	PRJNA1111146	Other	Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C traumatic brain injury TBI; T ISRIB injection I TBI and ISRIB injection TI.			C7 TK37	strain:Wild type\|age:5 month\|collection date:2023 08 20\|geo loc name:Russia\|sex:NA\|tissue:brain\|sample type:C7 TK37\|treatment:Control\|BioSampleModel:Model organism or animal	Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C traumatic brain injury TBI; T ISRIB injection I TBI and ISRIB injection TI.	TK37	TK37	RNA isolation was performed using the ExtractRNA reagent following the standard protocol for TriZol mediated extraction. The RNA quality was checked by capillary electrophoresis using the QIAxcel Advanced program. Total RNA was used for isolation of polyA fraction using NEBNext PolyA mRNA Magnetic Isolation Module according to the manufacturer's recommendations. RNA was next quantified on Quntus fluorometer and used for library preparation using NEBNext UltraTM Directional RNA Library PrepKit for Illumina with NEBNext Multiplex Oligos for Illumina according to the manufacturer's recommendations. The quality of libraries was confirmed by capillary electrophoresis using the QIAxcel Advanced program. Pair end sequencing was performed using Illumina HiSeq2500 with a read length of 110 bp.	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina HiSeq 2500	SRP507393	C7-TK37_S25_R1_001.fastq.gz C7-TK37_S25_R2_001.fastq.gz	fastq fastq	1536459611.0	7103135.0	C7 TK37 S25 R1 001.fastq.gz	0:108.14 1:108.16	A:423368949;C:341783029;G:338600069;T:427083273;N:5624291	108	108	423368949	341783029	338600069	427083273	5624291	SRX24539431	SRS21284308	SRA1865594	Sirius University of Science and Technology\|Genetics and Life Science	Sirius University of Science and Technology												B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	nebnext	bulk	unknown	unknown	Russia	2024-05-13	Adult	Adult	Brain	Nervous System
32112	32112	SRR29012738	SRX24539430	SRS21284307	SRP507393	PRJNA1111146	RNA seq of adult zebrafish brain following traumatic brain injury and/or ISRIB exposure	PRJNA1111146	Other	Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C traumatic brain injury TBI; T ISRIB injection I TBI and ISRIB injection TI.			C5 TK35	strain:Wild type\|age:5 month\|collection date:2023 08 20\|geo loc name:Russia\|sex:NA\|tissue:brain\|sample type:C5 TK35\|treatment:Control\|BioSampleModel:Model organism or animal	Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C traumatic brain injury TBI; T ISRIB injection I TBI and ISRIB injection TI.	TK35	TK35	RNA isolation was performed using the ExtractRNA reagent following the standard protocol for TriZol mediated extraction. The RNA quality was checked by capillary electrophoresis using the QIAxcel Advanced program. Total RNA was used for isolation of polyA fraction using NEBNext PolyA mRNA Magnetic Isolation Module according to the manufacturer's recommendations. RNA was next quantified on Quntus fluorometer and used for library preparation using NEBNext UltraTM Directional RNA Library PrepKit for Illumina with NEBNext Multiplex Oligos for Illumina according to the manufacturer's recommendations. The quality of libraries was confirmed by capillary electrophoresis using the QIAxcel Advanced program. Pair end sequencing was performed using Illumina HiSeq2500 with a read length of 110 bp.	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina HiSeq 2500	SRP507393	C5-TK35_S24_R1_001.fastq.gz C5-TK35_S24_R2_001.fastq.gz	fastq fastq	2315322327.0	10788443.0	C5 TK35 S24 R1 001.fastq.gz	0:107.29 1:107.33	A:634261894;C:516670403;G:512433057;T:639505411;N:12451562	107	107	634261894	516670403	512433057	639505411	12451562	SRX24539430	SRS21284307	SRA1865594	Sirius University of Science and Technology\|Genetics and Life Science	Sirius University of Science and Technology												B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	nebnext	bulk	unknown	unknown	Russia	2024-05-13	Adult	Adult	Brain	Nervous System
32113	32113	SRR29012739	SRX24539429	SRS21284306	SRP507393	PRJNA1111146	RNA seq of adult zebrafish brain following traumatic brain injury and/or ISRIB exposure	PRJNA1111146	Other	Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C traumatic brain injury TBI; T ISRIB injection I TBI and ISRIB injection TI.			C4 TK34	strain:Wild type\|age:5 month\|collection date:2023 08 20\|geo loc name:Russia\|sex:NA\|tissue:brain\|sample type:C4 TK34\|treatment:Control\|BioSampleModel:Model organism or animal	Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C traumatic brain injury TBI; T ISRIB injection I TBI and ISRIB injection TI.	TK34	TK34	RNA isolation was performed using the ExtractRNA reagent following the standard protocol for TriZol mediated extraction. The RNA quality was checked by capillary electrophoresis using the QIAxcel Advanced program. Total RNA was used for isolation of polyA fraction using NEBNext PolyA mRNA Magnetic Isolation Module according to the manufacturer's recommendations. RNA was next quantified on Quntus fluorometer and used for library preparation using NEBNext UltraTM Directional RNA Library PrepKit for Illumina with NEBNext Multiplex Oligos for Illumina according to the manufacturer's recommendations. The quality of libraries was confirmed by capillary electrophoresis using the QIAxcel Advanced program. Pair end sequencing was performed using Illumina HiSeq2500 with a read length of 110 bp.	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina HiSeq 2500	SRP507393	C4-TK34_S23_R1_001.fastq.gz C4-TK34_S23_R2_001.fastq.gz	fastq fastq	2329888357.0	11027349.0	C4 TK34 S23 R1 001.fastq.gz	0:105.60 1:105.68	A:630397662;C:520059288;G:515161552;T:635983184;N:28286671	105	105	630397662	520059288	515161552	635983184	28286671	SRX24539429	SRS21284306	SRA1865594	Sirius University of Science and Technology\|Genetics and Life Science	Sirius University of Science and Technology												B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	nebnext	bulk	unknown	unknown	Russia	2024-05-13	Adult	Adult	Brain	Nervous System
32114	32114	SRR29012740	SRX24539428	SRS21284305	SRP507393	PRJNA1111146	RNA seq of adult zebrafish brain following traumatic brain injury and/or ISRIB exposure	PRJNA1111146	Other	Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C traumatic brain injury TBI; T ISRIB injection I TBI and ISRIB injection TI.			TI8 TK8	strain:Wild type\|age:5 month\|collection date:2023 08 20\|geo loc name:Russia\|sex:NA\|tissue:brain\|sample type:TI8 TK8\|treatment:TBI + ISRIB\|BioSampleModel:Model organism or animal	Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C traumatic brain injury TBI; T ISRIB injection I TBI and ISRIB injection TI.	TK8	TK8	RNA isolation was performed using the ExtractRNA reagent following the standard protocol for TriZol mediated extraction. The RNA quality was checked by capillary electrophoresis using the QIAxcel Advanced program. Total RNA was used for isolation of polyA fraction using NEBNext PolyA mRNA Magnetic Isolation Module according to the manufacturer's recommendations. RNA was next quantified on Quntus fluorometer and used for library preparation using NEBNext UltraTM Directional RNA Library PrepKit for Illumina with NEBNext Multiplex Oligos for Illumina according to the manufacturer's recommendations. The quality of libraries was confirmed by capillary electrophoresis using the QIAxcel Advanced program. Pair end sequencing was performed using Illumina HiSeq2500 with a read length of 110 bp.	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina HiSeq 2500	SRP507393	TI8-TK8_S7_R1_001.fastq.gz TI8-TK8_S7_R2_001.fastq.gz	fastq fastq	4277303861.0	19878893.0	TI8 TK8 S7 R1 001.fastq.gz	0:107.58 1:107.59	A:1152512692;C:974435535;G:968603233;T:1168971271;N:12781130	107	107	1152512692	974435535	968603233	1168971271	12781130	SRX24539428	SRS21284305	SRA1865594	Sirius University of Science and Technology\|Genetics and Life Science	Sirius University of Science and Technology												B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	nebnext	bulk	unknown	unknown	Russia	2024-05-13	Adult	Adult	Brain	Nervous System
32115	32115	SRR29012741	SRX24539427	SRS21284304	SRP507393	PRJNA1111146	RNA seq of adult zebrafish brain following traumatic brain injury and/or ISRIB exposure	PRJNA1111146	Other	Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C traumatic brain injury TBI; T ISRIB injection I TBI and ISRIB injection TI.			TI7 TK7	strain:Wild type\|age:5 month\|collection date:2023 08 20\|geo loc name:Russia\|sex:NA\|tissue:brain\|sample type:TI7 TK7\|treatment:TBI + ISRIB\|BioSampleModel:Model organism or animal	Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C traumatic brain injury TBI; T ISRIB injection I TBI and ISRIB injection TI.	TK7	TK7	RNA isolation was performed using the ExtractRNA reagent following the standard protocol for TriZol mediated extraction. The RNA quality was checked by capillary electrophoresis using the QIAxcel Advanced program. Total RNA was used for isolation of polyA fraction using NEBNext PolyA mRNA Magnetic Isolation Module according to the manufacturer's recommendations. RNA was next quantified on Quntus fluorometer and used for library preparation using NEBNext UltraTM Directional RNA Library PrepKit for Illumina with NEBNext Multiplex Oligos for Illumina according to the manufacturer's recommendations. The quality of libraries was confirmed by capillary electrophoresis using the QIAxcel Advanced program. Pair end sequencing was performed using Illumina HiSeq2500 with a read length of 110 bp.	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina HiSeq 2500	SRP507393	TI7-TK7_S6_R1_001.fastq.gz TI7-TK7_S6_R2_001.fastq.gz	fastq fastq	2617012040.0	12126551.0	TI7 TK7 S6 R1 001.fastq.gz	0:107.90 1:107.91	A:701588599;C:599589501;G:599522057;T:710050024;N:6261859	107	107	701588599	599589501	599522057	710050024	6261859	SRX24539427	SRS21284304	SRA1865594	Sirius University of Science and Technology\|Genetics and Life Science	Sirius University of Science and Technology												B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	nebnext	bulk	unknown	unknown	Russia	2024-05-13	Adult	Adult	Brain	Nervous System
32116	32116	SRR29012742	SRX24539426	SRS21284303	SRP507393	PRJNA1111146	RNA seq of adult zebrafish brain following traumatic brain injury and/or ISRIB exposure	PRJNA1111146	Other	Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C traumatic brain injury TBI; T ISRIB injection I TBI and ISRIB injection TI.			TI6 TK6	strain:Wild type\|age:5 month\|collection date:2023 08 20\|geo loc name:Russia\|sex:NA\|tissue:brain\|sample type:TI6 TK6\|treatment:TBI + ISRIB\|BioSampleModel:Model organism or animal	Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C traumatic brain injury TBI; T ISRIB injection I TBI and ISRIB injection TI.	TK6	TK6	RNA isolation was performed using the ExtractRNA reagent following the standard protocol for TriZol mediated extraction. The RNA quality was checked by capillary electrophoresis using the QIAxcel Advanced program. Total RNA was used for isolation of polyA fraction using NEBNext PolyA mRNA Magnetic Isolation Module according to the manufacturer's recommendations. RNA was next quantified on Quntus fluorometer and used for library preparation using NEBNext UltraTM Directional RNA Library PrepKit for Illumina with NEBNext Multiplex Oligos for Illumina according to the manufacturer's recommendations. The quality of libraries was confirmed by capillary electrophoresis using the QIAxcel Advanced program. Pair end sequencing was performed using Illumina HiSeq2500 with a read length of 110 bp.	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina HiSeq 2500	SRP507393	TI6-TK6_S5_R1_001.fastq.gz TI6-TK6_S5_R2_001.fastq.gz	fastq fastq	5193201377.0	24181964.0	TI6 TK6 S5 R1 001.fastq.gz	0:107.36 1:107.40	A:1427289221;C:1151717905;G:1140736875;T:1447664955;N:25792421	107	107	1427289221	1151717905	1140736875	1447664955	25792421	SRX24539426	SRS21284303	SRA1865594	Sirius University of Science and Technology\|Genetics and Life Science	Sirius University of Science and Technology												B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	nebnext	bulk	unknown	unknown	Russia	2024-05-13	Adult	Adult	Brain	Nervous System
32117	32117	SRR29012743	SRX24539425	SRS21284302	SRP507393	PRJNA1111146	RNA seq of adult zebrafish brain following traumatic brain injury and/or ISRIB exposure	PRJNA1111146	Other	Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C traumatic brain injury TBI; T ISRIB injection I TBI and ISRIB injection TI.			TI5 TK5	strain:Wild type\|age:5 month\|collection date:2023 08 20\|geo loc name:Russia\|sex:NA\|tissue:brain\|sample type:TI5 TK5\|treatment:TBI + ISRIB\|BioSampleModel:Model organism or animal	Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C traumatic brain injury TBI; T ISRIB injection I TBI and ISRIB injection TI.	TK5	TK5	RNA isolation was performed using the ExtractRNA reagent following the standard protocol for TriZol mediated extraction. The RNA quality was checked by capillary electrophoresis using the QIAxcel Advanced program. Total RNA was used for isolation of polyA fraction using NEBNext PolyA mRNA Magnetic Isolation Module according to the manufacturer's recommendations. RNA was next quantified on Quntus fluorometer and used for library preparation using NEBNext UltraTM Directional RNA Library PrepKit for Illumina with NEBNext Multiplex Oligos for Illumina according to the manufacturer's recommendations. The quality of libraries was confirmed by capillary electrophoresis using the QIAxcel Advanced program. Pair end sequencing was performed using Illumina HiSeq2500 with a read length of 110 bp.	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina HiSeq 2500	SRP507393	TI5-TK5_S4_R1_001.fastq.gz TI5-TK5_S4_R2_001.fastq.gz	fastq fastq	2048648256.0	9524761.0	TI5 TK5 S4 R1 001.fastq.gz	0:107.53 1:107.56	A:575845206;C:442981520;G:439368910;T:583602331;N:6850289	107	107	575845206	442981520	439368910	583602331	6850289	SRX24539425	SRS21284302	SRA1865594	Sirius University of Science and Technology\|Genetics and Life Science	Sirius University of Science and Technology												B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	nebnext	bulk	unknown	unknown	Russia	2024-05-13	Adult	Adult	Brain	Nervous System
32118	32118	SRR29012744	SRX24539424	SRS21284301	SRP507393	PRJNA1111146	RNA seq of adult zebrafish brain following traumatic brain injury and/or ISRIB exposure	PRJNA1111146	Other	Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C traumatic brain injury TBI; T ISRIB injection I TBI and ISRIB injection TI.			TI4 TK4	strain:Wild type\|age:5 month\|collection date:2023 08 20\|geo loc name:Russia\|sex:NA\|tissue:brain\|sample type:TI4 TK4\|treatment:TBI + ISRIB\|BioSampleModel:Model organism or animal	Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C traumatic brain injury TBI; T ISRIB injection I TBI and ISRIB injection TI.	TK4	TK4	RNA isolation was performed using the ExtractRNA reagent following the standard protocol for TriZol mediated extraction. The RNA quality was checked by capillary electrophoresis using the QIAxcel Advanced program. Total RNA was used for isolation of polyA fraction using NEBNext PolyA mRNA Magnetic Isolation Module according to the manufacturer's recommendations. RNA was next quantified on Quntus fluorometer and used for library preparation using NEBNext UltraTM Directional RNA Library PrepKit for Illumina with NEBNext Multiplex Oligos for Illumina according to the manufacturer's recommendations. The quality of libraries was confirmed by capillary electrophoresis using the QIAxcel Advanced program. Pair end sequencing was performed using Illumina HiSeq2500 with a read length of 110 bp.	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina HiSeq 2500	SRP507393	TI4-TK4_S3_R1_001.fastq.gz TI4-TK4_S3_R2_001.fastq.gz	fastq fastq	2858158305.0	13330760.0	TI4 TK4 S3 R1 001.fastq.gz	0:107.18 1:107.22	A:781642776;C:636257123;G:631858904;T:791480839;N:16918663	107	107	781642776	636257123	631858904	791480839	16918663	SRX24539424	SRS21284301	SRA1865594	Sirius University of Science and Technology\|Genetics and Life Science	Sirius University of Science and Technology												B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	nebnext	bulk	unknown	unknown	Russia	2024-05-13	Adult	Adult	Brain	Nervous System
32119	32119	SRR29012745	SRX24539423	SRS21284300	SRP507393	PRJNA1111146	RNA seq of adult zebrafish brain following traumatic brain injury and/or ISRIB exposure	PRJNA1111146	Other	Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C traumatic brain injury TBI; T ISRIB injection I TBI and ISRIB injection TI.			TI3 TK3	strain:Wild type\|age:5 month\|collection date:2023 08 20\|geo loc name:Russia\|sex:NA\|tissue:brain\|sample type:TI3 TK3\|treatment:TBI + ISRIB\|BioSampleModel:Model organism or animal	Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C traumatic brain injury TBI; T ISRIB injection I TBI and ISRIB injection TI.	TK3	TK3	RNA isolation was performed using the ExtractRNA reagent following the standard protocol for TriZol mediated extraction. The RNA quality was checked by capillary electrophoresis using the QIAxcel Advanced program. Total RNA was used for isolation of polyA fraction using NEBNext PolyA mRNA Magnetic Isolation Module according to the manufacturer's recommendations. RNA was next quantified on Quntus fluorometer and used for library preparation using NEBNext UltraTM Directional RNA Library PrepKit for Illumina with NEBNext Multiplex Oligos for Illumina according to the manufacturer's recommendations. The quality of libraries was confirmed by capillary electrophoresis using the QIAxcel Advanced program. Pair end sequencing was performed using Illumina HiSeq2500 with a read length of 110 bp.	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina HiSeq 2500	SRP507393	TI3-TK3_S2_R1_001.fastq.gz TI3-TK3_S2_R2_001.fastq.gz	fastq fastq	1566054292.0	7297460.0	TI3 TK3 S2 R1 001.fastq.gz	0:107.29 1:107.31	A:419497793;C:357426293;G:355453976;T:425654356;N:8021874	107	107	419497793	357426293	355453976	425654356	8021874	SRX24539423	SRS21284300	SRA1865594	Sirius University of Science and Technology\|Genetics and Life Science	Sirius University of Science and Technology												B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	nebnext	bulk	unknown	unknown	Russia	2024-05-13	Adult	Adult	Brain	Nervous System
32120	32120	SRR29012746	SRX24539422	SRS21284299	SRP507393	PRJNA1111146	RNA seq of adult zebrafish brain following traumatic brain injury and/or ISRIB exposure	PRJNA1111146	Other	Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C traumatic brain injury TBI; T ISRIB injection I TBI and ISRIB injection TI.			TI2 TK2	strain:Wild type\|age:5 month\|collection date:2023 08 20\|geo loc name:Russia\|sex:NA\|tissue:brain\|sample type:TI2 TK2\|treatment:TBI + ISRIB\|BioSampleModel:Model organism or animal	Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C traumatic brain injury TBI; T ISRIB injection I TBI and ISRIB injection TI.	TK2	TK2	RNA isolation was performed using the ExtractRNA reagent following the standard protocol for TriZol mediated extraction. The RNA quality was checked by capillary electrophoresis using the QIAxcel Advanced program. Total RNA was used for isolation of polyA fraction using NEBNext PolyA mRNA Magnetic Isolation Module according to the manufacturer's recommendations. RNA was next quantified on Quntus fluorometer and used for library preparation using NEBNext UltraTM Directional RNA Library PrepKit for Illumina with NEBNext Multiplex Oligos for Illumina according to the manufacturer's recommendations. The quality of libraries was confirmed by capillary electrophoresis using the QIAxcel Advanced program. Pair end sequencing was performed using Illumina HiSeq2500 with a read length of 110 bp.	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina HiSeq 2500	SRP507393	TI2-TK2_S1_R1_001.fastq.gz TI2-TK2_S1_R2_001.fastq.gz	fastq fastq	1865518160.0	8666289.0	TI2 TK2 S1 R1 001.fastq.gz	0:107.62 1:107.64	A:510590407;C:415852163;G:413264662;T:517549106;N:8261822	107	107	510590407	415852163	413264662	517549106	8261822	SRX24539422	SRS21284299	SRA1865594	Sirius University of Science and Technology\|Genetics and Life Science	Sirius University of Science and Technology												B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	nebnext	bulk	unknown	unknown	Russia	2024-05-13	Adult	Adult	Brain	Nervous System
32121	32121	SRR29012747	SRX24539421	SRS21284297	SRP507393	PRJNA1111146	RNA seq of adult zebrafish brain following traumatic brain injury and/or ISRIB exposure	PRJNA1111146	Other	Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C traumatic brain injury TBI; T ISRIB injection I TBI and ISRIB injection TI.			C3 TK33	strain:Wild type\|age:5 month\|collection date:2023 08 20\|geo loc name:Russia\|sex:NA\|tissue:brain\|sample type:C3 TK33\|treatment:Control\|BioSampleModel:Model organism or animal	Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C traumatic brain injury TBI; T ISRIB injection I TBI and ISRIB injection TI.	TK33	TK33	RNA isolation was performed using the ExtractRNA reagent following the standard protocol for TriZol mediated extraction. The RNA quality was checked by capillary electrophoresis using the QIAxcel Advanced program. Total RNA was used for isolation of polyA fraction using NEBNext PolyA mRNA Magnetic Isolation Module according to the manufacturer's recommendations. RNA was next quantified on Quntus fluorometer and used for library preparation using NEBNext UltraTM Directional RNA Library PrepKit for Illumina with NEBNext Multiplex Oligos for Illumina according to the manufacturer's recommendations. The quality of libraries was confirmed by capillary electrophoresis using the QIAxcel Advanced program. Pair end sequencing was performed using Illumina HiSeq2500 with a read length of 110 bp.	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina HiSeq 2500	SRP507393	C3-TK33_S22_R1_001.fastq.gz C3-TK33_S22_R2_001.fastq.gz	fastq fastq	1780541368.0	8253847.0	C3 TK33 S22 R1 001.fastq.gz	0:107.85 1:107.87	A:513337117;C:371411358;G:365394452;T:521921928;N:8476513	107	107	513337117	371411358	365394452	521921928	8476513	SRX24539421	SRS21284297	SRA1865594	Sirius University of Science and Technology\|Genetics and Life Science	Sirius University of Science and Technology												T	T	mates < 9% mapping rate	illumina	hiseq_era	unknown	poly_a	nebnext	bulk	unknown	unknown	Russia	2024-05-13	Adult	Adult	Brain	Nervous System
32122	32122	SRR29012748	SRX24539420	SRS21284298	SRP507393	PRJNA1111146	RNA seq of adult zebrafish brain following traumatic brain injury and/or ISRIB exposure	PRJNA1111146	Other	Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C traumatic brain injury TBI; T ISRIB injection I TBI and ISRIB injection TI.			T7 TK30	strain:Wild type\|age:5 month\|collection date:2023 08 20\|geo loc name:Russia\|sex:NA\|tissue:brain\|sample type:T7 TK30\|treatment:TBI\|BioSampleModel:Model organism or animal	Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C traumatic brain injury TBI; T ISRIB injection I TBI and ISRIB injection TI.	TK30	TK30	RNA isolation was performed using the ExtractRNA reagent following the standard protocol for TriZol mediated extraction. The RNA quality was checked by capillary electrophoresis using the QIAxcel Advanced program. Total RNA was used for isolation of polyA fraction using NEBNext PolyA mRNA Magnetic Isolation Module according to the manufacturer's recommendations. RNA was next quantified on Quntus fluorometer and used for library preparation using NEBNext UltraTM Directional RNA Library PrepKit for Illumina with NEBNext Multiplex Oligos for Illumina according to the manufacturer's recommendations. The quality of libraries was confirmed by capillary electrophoresis using the QIAxcel Advanced program. Pair end sequencing was performed using Illumina HiSeq2500 with a read length of 110 bp.	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina HiSeq 2500	SRP507393	T7-TK30_S19_R1_001.fastq.gz T7-TK30_S19_R2_001.fastq.gz	fastq fastq	1503037534.0	7034919.0	T7 TK30 S19 R1 001.fastq.gz	0:106.80 1:106.85	A:415333842;C:329932770;G:326603495;T:418836802;N:12330625	106	106	415333842	329932770	326603495	418836802	12330625	SRX24539420	SRS21284298	SRA1865594	Sirius University of Science and Technology\|Genetics and Life Science	Sirius University of Science and Technology												B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	nebnext	bulk	unknown	unknown	Russia	2024-05-13	Adult	Adult	Brain	Nervous System
32123	32123	SRR29012749	SRX24539419	SRS21284296	SRP507393	PRJNA1111146	RNA seq of adult zebrafish brain following traumatic brain injury and/or ISRIB exposure	PRJNA1111146	Other	Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C traumatic brain injury TBI; T ISRIB injection I TBI and ISRIB injection TI.			T6 TK29	strain:Wild type\|age:5 month\|collection date:2023 08 20\|geo loc name:Russia\|sex:NA\|tissue:brain\|sample type:T6 TK29\|treatment:TBI\|BioSampleModel:Model organism or animal	Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C traumatic brain injury TBI; T ISRIB injection I TBI and ISRIB injection TI.	TK29	TK29	RNA isolation was performed using the ExtractRNA reagent following the standard protocol for TriZol mediated extraction. The RNA quality was checked by capillary electrophoresis using the QIAxcel Advanced program. Total RNA was used for isolation of polyA fraction using NEBNext PolyA mRNA Magnetic Isolation Module according to the manufacturer's recommendations. RNA was next quantified on Quntus fluorometer and used for library preparation using NEBNext UltraTM Directional RNA Library PrepKit for Illumina with NEBNext Multiplex Oligos for Illumina according to the manufacturer's recommendations. The quality of libraries was confirmed by capillary electrophoresis using the QIAxcel Advanced program. Pair end sequencing was performed using Illumina HiSeq2500 with a read length of 110 bp.	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina HiSeq 2500	SRP507393	T6-TK29_S18_R1_001.fastq.gz T6-TK29_S18_R2_001.fastq.gz	fastq fastq	2167995268.0	10034734.0	T6 TK29 S18 R1 001.fastq.gz	0:108.03 1:108.02	A:579041799;C:499138909;G:494478121;T:585849580;N:9486859	108	108	579041799	499138909	494478121	585849580	9486859	SRX24539419	SRS21284296	SRA1865594	Sirius University of Science and Technology\|Genetics and Life Science	Sirius University of Science and Technology												B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	nebnext	bulk	unknown	unknown	Russia	2024-05-13	Adult	Adult	Brain	Nervous System
32124	32124	SRR29012750	SRX24539418	SRS21284295	SRP507393	PRJNA1111146	RNA seq of adult zebrafish brain following traumatic brain injury and/or ISRIB exposure	PRJNA1111146	Other	Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C traumatic brain injury TBI; T ISRIB injection I TBI and ISRIB injection TI.			T5 TK28	strain:Wild type\|age:5 month\|collection date:2023 08 20\|geo loc name:Russia\|sex:NA\|tissue:brain\|sample type:T5 TK28\|treatment:TBI\|BioSampleModel:Model organism or animal	Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C traumatic brain injury TBI; T ISRIB injection I TBI and ISRIB injection TI.	TK28	TK28	RNA isolation was performed using the ExtractRNA reagent following the standard protocol for TriZol mediated extraction. The RNA quality was checked by capillary electrophoresis using the QIAxcel Advanced program. Total RNA was used for isolation of polyA fraction using NEBNext PolyA mRNA Magnetic Isolation Module according to the manufacturer's recommendations. RNA was next quantified on Quntus fluorometer and used for library preparation using NEBNext UltraTM Directional RNA Library PrepKit for Illumina with NEBNext Multiplex Oligos for Illumina according to the manufacturer's recommendations. The quality of libraries was confirmed by capillary electrophoresis using the QIAxcel Advanced program. Pair end sequencing was performed using Illumina HiSeq2500 with a read length of 110 bp.	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina HiSeq 2500	SRP507393	T5-TK28_S17_R1_001.fastq.gz T5-TK28_S17_R2_001.fastq.gz	fastq fastq	2809544566.0	13129662.0	T5 TK28 S17 R1 001.fastq.gz	0:106.97 1:107.01	A:778118767;C:619618875;G:614045445;T:781068333;N:16693146	106	107	778118767	619618875	614045445	781068333	16693146	SRX24539418	SRS21284295	SRA1865594	Sirius University of Science and Technology\|Genetics and Life Science	Sirius University of Science and Technology												B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	nebnext	bulk	unknown	unknown	Russia	2024-05-13	Adult	Adult	Brain	Nervous System
32125	32125	SRR29012751	SRX24539417	SRS21284294	SRP507393	PRJNA1111146	RNA seq of adult zebrafish brain following traumatic brain injury and/or ISRIB exposure	PRJNA1111146	Other	Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C traumatic brain injury TBI; T ISRIB injection I TBI and ISRIB injection TI.			T4 TK27	strain:Wild type\|age:5 month\|collection date:2023 08 20\|geo loc name:Russia\|sex:NA\|tissue:brain\|sample type:T4 TK27\|treatment:TBI\|BioSampleModel:Model organism or animal	Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C traumatic brain injury TBI; T ISRIB injection I TBI and ISRIB injection TI.	TK27	TK27	RNA isolation was performed using the ExtractRNA reagent following the standard protocol for TriZol mediated extraction. The RNA quality was checked by capillary electrophoresis using the QIAxcel Advanced program. Total RNA was used for isolation of polyA fraction using NEBNext PolyA mRNA Magnetic Isolation Module according to the manufacturer's recommendations. RNA was next quantified on Quntus fluorometer and used for library preparation using NEBNext UltraTM Directional RNA Library PrepKit for Illumina with NEBNext Multiplex Oligos for Illumina according to the manufacturer's recommendations. The quality of libraries was confirmed by capillary electrophoresis using the QIAxcel Advanced program. Pair end sequencing was performed using Illumina HiSeq2500 with a read length of 110 bp.	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina HiSeq 2500	SRP507393	T4-TK27_S16_R1_001.fastq.gz T4-TK27_S16_R2_001.fastq.gz	fastq fastq	2225863101.0	10367681.0	T4 TK27 S16 R1 001.fastq.gz	0:107.33 1:107.36	A:603151281;C:502052154;G:496942138;T:608675289;N:15042239	107	107	603151281	502052154	496942138	608675289	15042239	SRX24539417	SRS21284294	SRA1865594	Sirius University of Science and Technology\|Genetics and Life Science	Sirius University of Science and Technology												B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	nebnext	bulk	unknown	unknown	Russia	2024-05-13	Adult	Adult	Brain	Nervous System
32126	32126	SRR29012752	SRX24539416	SRS21284293	SRP507393	PRJNA1111146	RNA seq of adult zebrafish brain following traumatic brain injury and/or ISRIB exposure	PRJNA1111146	Other	Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C traumatic brain injury TBI; T ISRIB injection I TBI and ISRIB injection TI.			T3 TK26	strain:Wild type\|age:5 month\|collection date:2023 08 20\|geo loc name:Russia\|sex:NA\|tissue:brain\|sample type:T3 TK26\|treatment:TBI\|BioSampleModel:Model organism or animal	Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C traumatic brain injury TBI; T ISRIB injection I TBI and ISRIB injection TI.	TK26	TK26	RNA isolation was performed using the ExtractRNA reagent following the standard protocol for TriZol mediated extraction. The RNA quality was checked by capillary electrophoresis using the QIAxcel Advanced program. Total RNA was used for isolation of polyA fraction using NEBNext PolyA mRNA Magnetic Isolation Module according to the manufacturer's recommendations. RNA was next quantified on Quntus fluorometer and used for library preparation using NEBNext UltraTM Directional RNA Library PrepKit for Illumina with NEBNext Multiplex Oligos for Illumina according to the manufacturer's recommendations. The quality of libraries was confirmed by capillary electrophoresis using the QIAxcel Advanced program. Pair end sequencing was performed using Illumina HiSeq2500 with a read length of 110 bp.	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina HiSeq 2500	SRP507393	T3-TK26_S15_R1_001.fastq.gz T3-TK26_S15_R2_001.fastq.gz	fastq fastq	1940446267.0	9166557.0	T3 TK26 S15 R1 001.fastq.gz	0:105.81 1:105.87	A:525291529;C:433681588;G:429227771;T:530538742;N:21706637	105	105	525291529	433681588	429227771	530538742	21706637	SRX24539416	SRS21284293	SRA1865594	Sirius University of Science and Technology\|Genetics and Life Science	Sirius University of Science and Technology												B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	nebnext	bulk	unknown	unknown	Russia	2024-05-13	Adult	Adult	Brain	Nervous System
32127	32127	SRR29012753	SRX24539415	SRS21284292	SRP507393	PRJNA1111146	RNA seq of adult zebrafish brain following traumatic brain injury and/or ISRIB exposure	PRJNA1111146	Other	Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C traumatic brain injury TBI; T ISRIB injection I TBI and ISRIB injection TI.			T2 TK23	strain:Wild type\|age:5 month\|collection date:2023 08 20\|geo loc name:Russia\|sex:NA\|tissue:brain\|sample type:T2 TK23\|treatment:TBI\|BioSampleModel:Model organism or animal	Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C traumatic brain injury TBI; T ISRIB injection I TBI and ISRIB injection TI.	TK23	TK23	RNA isolation was performed using the ExtractRNA reagent following the standard protocol for TriZol mediated extraction. The RNA quality was checked by capillary electrophoresis using the QIAxcel Advanced program. Total RNA was used for isolation of polyA fraction using NEBNext PolyA mRNA Magnetic Isolation Module according to the manufacturer's recommendations. RNA was next quantified on Quntus fluorometer and used for library preparation using NEBNext UltraTM Directional RNA Library PrepKit for Illumina with NEBNext Multiplex Oligos for Illumina according to the manufacturer's recommendations. The quality of libraries was confirmed by capillary electrophoresis using the QIAxcel Advanced program. Pair end sequencing was performed using Illumina HiSeq2500 with a read length of 110 bp.	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina HiSeq 2500	SRP507393	T2-TK22_S13_R1_001.fastq.gz T2-TK22_S13_R2_001.fastq.gz	fastq fastq	1732117888.0	8020234.0	T2 TK22 S13 R1 001.fastq.gz	0:107.97 1:107.99	A:457940901;C:403905608;G:399758720;T:463834300;N:6678359	107	107	457940901	403905608	399758720	463834300	6678359	SRX24539415	SRS21284292	SRA1865594	Sirius University of Science and Technology\|Genetics and Life Science	Sirius University of Science and Technology												B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	nebnext	bulk	unknown	unknown	Russia	2024-05-13	Adult	Adult	Brain	Nervous System
32128	32128	SRR29012754	SRX24539414	SRS21284291	SRP507393	PRJNA1111146	RNA seq of adult zebrafish brain following traumatic brain injury and/or ISRIB exposure	PRJNA1111146	Other	Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C traumatic brain injury TBI; T ISRIB injection I TBI and ISRIB injection TI.			T1 TK22	strain:Wild type\|age:5 month\|collection date:2023 08 20\|geo loc name:Russia\|sex:NA\|tissue:brain\|sample type:T1 TK22\|treatment:TBI\|BioSampleModel:Model organism or animal	Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C traumatic brain injury TBI; T ISRIB injection I TBI and ISRIB injection TI.	TK22	TK22	RNA isolation was performed using the ExtractRNA reagent following the standard protocol for TriZol mediated extraction. The RNA quality was checked by capillary electrophoresis using the QIAxcel Advanced program. Total RNA was used for isolation of polyA fraction using NEBNext PolyA mRNA Magnetic Isolation Module according to the manufacturer's recommendations. RNA was next quantified on Quntus fluorometer and used for library preparation using NEBNext UltraTM Directional RNA Library PrepKit for Illumina with NEBNext Multiplex Oligos for Illumina according to the manufacturer's recommendations. The quality of libraries was confirmed by capillary electrophoresis using the QIAxcel Advanced program. Pair end sequencing was performed using Illumina HiSeq2500 with a read length of 110 bp.	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina HiSeq 2500	SRP507393	T1-TK23_S14_R1_001.fastq.gz T1-TK23_S14_R2_001.fastq.gz	fastq fastq	3331492486.0	15432444.0	T1 TK23 S14 R1 001.fastq.gz	0:107.95 1:107.93	A:868428457;C:786927841;G:785306451;T:875345180;N:15484557	107	107	868428457	786927841	785306451	875345180	15484557	SRX24539414	SRS21284291	SRA1865594	Sirius University of Science and Technology\|Genetics and Life Science	Sirius University of Science and Technology												B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	nebnext	bulk	unknown	unknown	Russia	2024-05-13	Adult	Adult	Brain	Nervous System
32129	32129	SRR29012755	SRX24539413	SRS21284290	SRP507393	PRJNA1111146	RNA seq of adult zebrafish brain following traumatic brain injury and/or ISRIB exposure	PRJNA1111146	Other	Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C traumatic brain injury TBI; T ISRIB injection I TBI and ISRIB injection TI.			I6 TK16	strain:Wild type\|age:5 month\|collection date:2023 08 20\|geo loc name:Russia\|sex:NA\|tissue:brain\|sample type:I6 TK16\|treatment:ISRIB\|BioSampleModel:Model organism or animal	Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C traumatic brain injury TBI; T ISRIB injection I TBI and ISRIB injection TI.	TK16	TK16	RNA isolation was performed using the ExtractRNA reagent following the standard protocol for TriZol mediated extraction. The RNA quality was checked by capillary electrophoresis using the QIAxcel Advanced program. Total RNA was used for isolation of polyA fraction using NEBNext PolyA mRNA Magnetic Isolation Module according to the manufacturer's recommendations. RNA was next quantified on Quntus fluorometer and used for library preparation using NEBNext UltraTM Directional RNA Library PrepKit for Illumina with NEBNext Multiplex Oligos for Illumina according to the manufacturer's recommendations. The quality of libraries was confirmed by capillary electrophoresis using the QIAxcel Advanced program. Pair end sequencing was performed using Illumina HiSeq2500 with a read length of 110 bp.	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina HiSeq 2500	SRP507393	I6-TK16_S12_R1_001.fastq.gz I6-TK16_S12_R2_001.fastq.gz	fastq fastq	3714945017.0	17207286.0	I6 TK16 S12 R1 001.fastq.gz	0:107.94 1:107.95	A:1013736103;C:833395445;G:825731700;T:1025966376;N:16115393	107	107	1013736103	833395445	825731700	1025966376	16115393	SRX24539413	SRS21284290	SRA1865594	Sirius University of Science and Technology\|Genetics and Life Science	Sirius University of Science and Technology												B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	nebnext	bulk	unknown	unknown	Russia	2024-05-13	Adult	Adult	Brain	Nervous System
32130	32130	SRR29012756	SRX24539412	SRS21284289	SRP507393	PRJNA1111146	RNA seq of adult zebrafish brain following traumatic brain injury and/or ISRIB exposure	PRJNA1111146	Other	Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C traumatic brain injury TBI; T ISRIB injection I TBI and ISRIB injection TI.			I5 TK15	strain:Wild type\|age:5 month\|collection date:2023 08 20\|geo loc name:Russia\|sex:NA\|tissue:brain\|sample type:I5 TK15\|treatment:ISRIB\|BioSampleModel:Model organism or animal	Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C traumatic brain injury TBI; T ISRIB injection I TBI and ISRIB injection TI.	TK15	TK15	RNA isolation was performed using the ExtractRNA reagent following the standard protocol for TriZol mediated extraction. The RNA quality was checked by capillary electrophoresis using the QIAxcel Advanced program. Total RNA was used for isolation of polyA fraction using NEBNext PolyA mRNA Magnetic Isolation Module according to the manufacturer's recommendations. RNA was next quantified on Quntus fluorometer and used for library preparation using NEBNext UltraTM Directional RNA Library PrepKit for Illumina with NEBNext Multiplex Oligos for Illumina according to the manufacturer's recommendations. The quality of libraries was confirmed by capillary electrophoresis using the QIAxcel Advanced program. Pair end sequencing was performed using Illumina HiSeq2500 with a read length of 110 bp.	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina HiSeq 2500	SRP507393	I5-TK15_S11_R1_001.fastq.gz I5-TK15_S11_R2_001.fastq.gz	fastq fastq	2794987343.0	13014050.0	I5 TK15 S11 R1 001.fastq.gz	0:107.37 1:107.40	A:774143942;C:614986331;G:609929626;T:782802382;N:13125062	107	107	774143942	614986331	609929626	782802382	13125062	SRX24539412	SRS21284289	SRA1865594	Sirius University of Science and Technology\|Genetics and Life Science	Sirius University of Science and Technology												B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	nebnext	bulk	unknown	unknown	Russia	2024-05-13	Adult	Adult	Brain	Nervous System
32131	32131	SRR29012757	SRX24539411	SRS21284288	SRP507393	PRJNA1111146	RNA seq of adult zebrafish brain following traumatic brain injury and/or ISRIB exposure	PRJNA1111146	Other	Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C traumatic brain injury TBI; T ISRIB injection I TBI and ISRIB injection TI.			I4 TK14	strain:Wild type\|age:5 month\|collection date:2023 08 20\|geo loc name:Russia\|sex:NA\|tissue:brain\|sample type:I4 TK14\|treatment:ISRIB\|BioSampleModel:Model organism or animal	Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C traumatic brain injury TBI; T ISRIB injection I TBI and ISRIB injection TI.	TK14	TK14	RNA isolation was performed using the ExtractRNA reagent following the standard protocol for TriZol mediated extraction. The RNA quality was checked by capillary electrophoresis using the QIAxcel Advanced program. Total RNA was used for isolation of polyA fraction using NEBNext PolyA mRNA Magnetic Isolation Module according to the manufacturer's recommendations. RNA was next quantified on Quntus fluorometer and used for library preparation using NEBNext UltraTM Directional RNA Library PrepKit for Illumina with NEBNext Multiplex Oligos for Illumina according to the manufacturer's recommendations. The quality of libraries was confirmed by capillary electrophoresis using the QIAxcel Advanced program. Pair end sequencing was performed using Illumina HiSeq2500 with a read length of 110 bp.	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina HiSeq 2500	SRP507393	I4-TK14_S10_R1_001.fastq.gz I4-TK14_S10_R2_001.fastq.gz	fastq fastq	1922427285.0	8937092.0	I4 TK14 S10 R1 001.fastq.gz	0:107.54 1:107.57	A:528449546;C:426814810;G:423703279;T:534207858;N:9251792	107	107	528449546	426814810	423703279	534207858	9251792	SRX24539411	SRS21284288	SRA1865594	Sirius University of Science and Technology\|Genetics and Life Science	Sirius University of Science and Technology												B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	nebnext	bulk	unknown	unknown	Russia	2024-05-13	Adult	Adult	Brain	Nervous System
32132	32132	SRR29012758	SRX24539410	SRS21284287	SRP507393	PRJNA1111146	RNA seq of adult zebrafish brain following traumatic brain injury and/or ISRIB exposure	PRJNA1111146	Other	Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C traumatic brain injury TBI; T ISRIB injection I TBI and ISRIB injection TI.			C2 TK32	strain:Wild type\|age:5 month\|collection date:2023 08 20\|geo loc name:Russia\|sex:NA\|tissue:brain\|sample type:C2 TK32\|treatment:Control\|BioSampleModel:Model organism or animal	Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C traumatic brain injury TBI; T ISRIB injection I TBI and ISRIB injection TI.	TK32	TK32	RNA isolation was performed using the ExtractRNA reagent following the standard protocol for TriZol mediated extraction. The RNA quality was checked by capillary electrophoresis using the QIAxcel Advanced program. Total RNA was used for isolation of polyA fraction using NEBNext PolyA mRNA Magnetic Isolation Module according to the manufacturer's recommendations. RNA was next quantified on Quntus fluorometer and used for library preparation using NEBNext UltraTM Directional RNA Library PrepKit for Illumina with NEBNext Multiplex Oligos for Illumina according to the manufacturer's recommendations. The quality of libraries was confirmed by capillary electrophoresis using the QIAxcel Advanced program. Pair end sequencing was performed using Illumina HiSeq2500 with a read length of 110 bp.	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina HiSeq 2500	SRP507393	C2-TK32_S21_R1_001.fastq.gz C2-TK32_S21_R2_001.fastq.gz	fastq fastq	3357957454.0	15544937.0	C2 TK32 S21 R1 001.fastq.gz	0:108.00 1:108.01	A:918342383;C:752111502;G:746458895;T:927695887;N:13348787	108	108	918342383	752111502	746458895	927695887	13348787	SRX24539410	SRS21284287	SRA1865594	Sirius University of Science and Technology\|Genetics and Life Science	Sirius University of Science and Technology												B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	nebnext	bulk	unknown	unknown	Russia	2024-05-13	Adult	Adult	Brain	Nervous System
32133	32133	SRR29012759	SRX24539409	SRS21284286	SRP507393	PRJNA1111146	RNA seq of adult zebrafish brain following traumatic brain injury and/or ISRIB exposure	PRJNA1111146	Other	Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C traumatic brain injury TBI; T ISRIB injection I TBI and ISRIB injection TI.			C1 TK31	strain:Wild type\|age:5 month\|collection date:2023 08 20\|geo loc name:Russia\|sex:NA\|tissue:brain\|sample type:C1 TK31\|treatment:Control\|BioSampleModel:Model organism or animal	Here analysed gene expression changes post Traumatic Brain Injury TBI and subsequent exposure to ISRIB in the brain of adult Danio rerio. 4 groups are available: control C traumatic brain injury TBI; T ISRIB injection I TBI and ISRIB injection TI.	TK31	TK31	RNA isolation was performed using the ExtractRNA reagent following the standard protocol for TriZol mediated extraction. The RNA quality was checked by capillary electrophoresis using the QIAxcel Advanced program. Total RNA was used for isolation of polyA fraction using NEBNext PolyA mRNA Magnetic Isolation Module according to the manufacturer's recommendations. RNA was next quantified on Quntus fluorometer and used for library preparation using NEBNext UltraTM Directional RNA Library PrepKit for Illumina with NEBNext Multiplex Oligos for Illumina according to the manufacturer's recommendations. The quality of libraries was confirmed by capillary electrophoresis using the QIAxcel Advanced program. Pair end sequencing was performed using Illumina HiSeq2500 with a read length of 110 bp.	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina HiSeq 2500	SRP507393	C1-TK31_S20_R1_001.fastq.gz C1-TK31_S20_R2_001.fastq.gz	fastq fastq	2442920945.0	11344005.0	C1 TK31 S20 R1 001.fastq.gz	0:107.66 1:107.69	A:668901972;C:544270967;G:539028537;T:676647377;N:14072092	107	107	668901972	544270967	539028537	676647377	14072092	SRX24539409	SRS21284286	SRA1865594	Sirius University of Science and Technology\|Genetics and Life Science	Sirius University of Science and Technology												B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	nebnext	bulk	unknown	unknown	Russia	2024-05-13	Adult	Adult	Brain	Nervous System
33379	33379	SRR30184285	SRX25650011	SRS22293080	SRP525334	PRJNA1145997	Regulation of optic nerve regeneration by srebf2	PRJNA1145997	Other	Laser capture microdissection of the retinal ganglion cell layer followed by mRNA seq was used to measure differentially expressed genes in adult zebrafish at three days post optic nerve crush injury. Experimental groups include naive control nonspecific morpholino control morpholino mediated srebf2 gene knockdown nonspecific morpholino control plus daily heat shock in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish and morpholino mediated srebf2 gene knockdown in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish with daily heatshock. These data provide a resource to study the effects of srebf2 manipulation on transcriptomic responses to optic nerve injury in the adult zebrafish model.		cMO 2	wt cmo2 M	strain:wild type\|age:>3 month\|collection date:2023 11 06\|geo loc name:USA: Milwaukee WI\|sex:male\|tissue:retinal ganglion cell layer\|biomaterial provider:Matthew B. Veldman Medical College of Wisconsin\|treatment:cMO 2\|BioSampleModel:Model organism or animal	LCM seq of Danio rerio:retinal ganglion cell layer	L10	L10	LCM seq NucleoSpin RNA XS purified ultra low input RNAseq at Novogene	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP525334	L10_S128_L005_R2_001.fastq.gz L10_S128_L005_R1_001.fastq.gz	fastq fastq	20328275944.0	67312172.0	L10 S128 L005 R1 001.fastq.gz	0:151 1:151	A:5643585269;C:4447562096;G:4432908344;T:5802780590;N:1439645	151	151	5643585269	4447562096	4432908344	5802780590	1439645	SRX25650011	SRS22293080	SRA1943640	Medical College of Wisconsin\|Cell Biology, Neurobiology, and Anatomy	Medical College of Wisconsin	2	0.89472	0.89558	0.14231	0.14209	0.76359	0.76327	0.57442	0.57155	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2024-08-09	Adult	Adult	Eye	Sensory System
33380	33380	SRR30184286	SRX25650010	SRS22293078	SRP525334	PRJNA1145997	Regulation of optic nerve regeneration by srebf2	PRJNA1145997	Other	Laser capture microdissection of the retinal ganglion cell layer followed by mRNA seq was used to measure differentially expressed genes in adult zebrafish at three days post optic nerve crush injury. Experimental groups include naive control nonspecific morpholino control morpholino mediated srebf2 gene knockdown nonspecific morpholino control plus daily heat shock in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish and morpholino mediated srebf2 gene knockdown in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish with daily heatshock. These data provide a resource to study the effects of srebf2 manipulation on transcriptomic responses to optic nerve injury in the adult zebrafish model.		cMO 1	wt cmo1 M	strain:wild type\|age:>3 month\|collection date:2023 11 06\|geo loc name:USA: Milwaukee WI\|sex:male\|tissue:retinal ganglion cell layer\|biomaterial provider:Matthew B. Veldman Medical College of Wisconsin\|treatment:cMO 1\|BioSampleModel:Model organism or animal	LCM seq of Danio rerio:retinal ganglion cell layer	L09	L09	LCM seq NucleoSpin RNA XS purified ultra low input RNAseq at Novogene	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP525334	L09_S106_L004_R2_001.fastq.gz L09_S106_L004_R1_001.fastq.gz	fastq fastq	17931167252.0	59374726.0	L09 S106 L004 R1 001.fastq.gz	0:151 1:151	A:4724456408;C:4170780589;G:4192052775;T:4841803749;N:2073731	151	151	4724456408	4170780589	4192052775	4841803749	2073731	SRX25650010	SRS22293078	SRA1943640	Medical College of Wisconsin\|Cell Biology, Neurobiology, and Anatomy	Medical College of Wisconsin	2	0.92527	0.92522	0.05941	0.05976	0.76532	0.76583	0.55358	0.55497	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2024-08-09	Adult	Adult	Eye	Sensory System
33381	33381	SRR30184287	SRX25650009	SRS22293079	SRP525334	PRJNA1145997	Regulation of optic nerve regeneration by srebf2	PRJNA1145997	Other	Laser capture microdissection of the retinal ganglion cell layer followed by mRNA seq was used to measure differentially expressed genes in adult zebrafish at three days post optic nerve crush injury. Experimental groups include naive control nonspecific morpholino control morpholino mediated srebf2 gene knockdown nonspecific morpholino control plus daily heat shock in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish and morpholino mediated srebf2 gene knockdown in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish with daily heatshock. These data provide a resource to study the effects of srebf2 manipulation on transcriptomic responses to optic nerve injury in the adult zebrafish model.		3dpi 4	wt R2 F	strain:wild type\|age:>3 month\|collection date:2023 11 06\|geo loc name:USA: Milwaukee WI\|sex:female\|tissue:retinal ganglion cell layer\|biomaterial provider:Matthew B. Veldman Medical College of Wisconsin\|treatment:3dpi 4\|BioSampleModel:Model organism or animal	LCM seq of Danio rerio:retinal ganglion cell layer	L08	L08	LCM seq NucleoSpin RNA XS purified ultra low input RNAseq at Novogene	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP525334	L08_S127_L005_R2_001.fastq.gz L08_S127_L005_R1_001.fastq.gz	fastq fastq	22665495016.0	75051308.0	L08 S127 L005 R1 001.fastq.gz	0:151 1:151	A:6228385739;C:4990124759;G:4979460238;T:6465924079;N:1600201	151	151	6228385739	4990124759	4979460238	6465924079	1600201	SRX25650009	SRS22293079	SRA1943640	Medical College of Wisconsin\|Cell Biology, Neurobiology, and Anatomy	Medical College of Wisconsin	2	0.87648	0.87921	0.12966	0.13019	0.75627	0.75666	0.5783	0.5754	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2024-08-09	Adult	Adult	Eye	Sensory System
33382	33382	SRR30184288	SRX25650008	SRS22293077	SRP525334	PRJNA1145997	Regulation of optic nerve regeneration by srebf2	PRJNA1145997	Other	Laser capture microdissection of the retinal ganglion cell layer followed by mRNA seq was used to measure differentially expressed genes in adult zebrafish at three days post optic nerve crush injury. Experimental groups include naive control nonspecific morpholino control morpholino mediated srebf2 gene knockdown nonspecific morpholino control plus daily heat shock in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish and morpholino mediated srebf2 gene knockdown in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish with daily heatshock. These data provide a resource to study the effects of srebf2 manipulation on transcriptomic responses to optic nerve injury in the adult zebrafish model.		3dpi 3	wt R1 F	strain:wild type\|age:>3 month\|collection date:2023 11 06\|geo loc name:USA: Milwaukee WI\|sex:female\|tissue:retinal ganglion cell layer\|biomaterial provider:Matthew B. Veldman Medical College of Wisconsin\|treatment:3dpi 3\|BioSampleModel:Model organism or animal	LCM seq of Danio rerio:retinal ganglion cell layer	L07	L07	LCM seq NucleoSpin RNA XS purified ultra low input RNAseq at Novogene	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP525334	L07_S126_L005_R2_001.fastq.gz L07_S126_L005_R1_001.fastq.gz	fastq fastq	22406825976.0	74194788.0	L07 S126 L005 R1 001.fastq.gz	0:151 1:151	A:6090398182;C:4986126981;G:5056253833;T:6272474188;N:1572792	151	151	6090398182	4986126981	5056253833	6272474188	1572792	SRX25650008	SRS22293077	SRA1943640	Medical College of Wisconsin\|Cell Biology, Neurobiology, and Anatomy	Medical College of Wisconsin	2	0.9153	0.91559	0.10005	0.0998	0.74679	0.7469	0.53845	0.5395	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2024-08-09	Adult	Adult	Eye	Sensory System
33383	33383	SRR30184289	SRX25650007	SRS22293075	SRP525334	PRJNA1145997	Regulation of optic nerve regeneration by srebf2	PRJNA1145997	Other	Laser capture microdissection of the retinal ganglion cell layer followed by mRNA seq was used to measure differentially expressed genes in adult zebrafish at three days post optic nerve crush injury. Experimental groups include naive control nonspecific morpholino control morpholino mediated srebf2 gene knockdown nonspecific morpholino control plus daily heat shock in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish and morpholino mediated srebf2 gene knockdown in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish with daily heatshock. These data provide a resource to study the effects of srebf2 manipulation on transcriptomic responses to optic nerve injury in the adult zebrafish model.		3dpi 2	wt R2 M	strain:wild type\|age:>3 month\|collection date:2023 11 06\|geo loc name:USA: Milwaukee WI\|sex:male\|tissue:retinal ganglion cell layer\|biomaterial provider:Matthew B. Veldman Medical College of Wisconsin\|treatment:3dpi 2\|BioSampleModel:Model organism or animal	LCM seq of Danio rerio:retinal ganglion cell layer	L06	L06	LCM seq NucleoSpin RNA XS purified ultra low input RNAseq at Novogene	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP525334	L06_S125_L005_R2_001.fastq.gz L06_S125_L005_R1_001.fastq.gz	fastq fastq	21918766796.0	72578698.0	L06 S125 L005 R1 001.fastq.gz	0:151 1:151	A:6030044320;C:4788979368;G:4790388904;T:6307807807;N:1546397	151	151	6030044320	4788979368	4790388904	6307807807	1546397	SRX25650007	SRS22293075	SRA1943640	Medical College of Wisconsin\|Cell Biology, Neurobiology, and Anatomy	Medical College of Wisconsin	2	0.87272	0.87475	0.15184	0.15299	0.76777	0.76702	0.58094	0.57863	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2024-08-09	Adult	Adult	Eye	Sensory System
33384	33384	SRR30184290	SRX25650006	SRS22293076	SRP525334	PRJNA1145997	Regulation of optic nerve regeneration by srebf2	PRJNA1145997	Other	Laser capture microdissection of the retinal ganglion cell layer followed by mRNA seq was used to measure differentially expressed genes in adult zebrafish at three days post optic nerve crush injury. Experimental groups include naive control nonspecific morpholino control morpholino mediated srebf2 gene knockdown nonspecific morpholino control plus daily heat shock in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish and morpholino mediated srebf2 gene knockdown in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish with daily heatshock. These data provide a resource to study the effects of srebf2 manipulation on transcriptomic responses to optic nerve injury in the adult zebrafish model.		3dpi 1	wt R1 M	strain:wild type\|age:>3 month\|collection date:2023 11 06\|geo loc name:USA: Milwaukee WI\|sex:male\|tissue:retinal ganglion cell layer\|biomaterial provider:Matthew B. Veldman Medical College of Wisconsin\|treatment:3dpi 1\|BioSampleModel:Model organism or animal	LCM seq of Danio rerio:retinal ganglion cell layer	L05	L05	LCM seq NucleoSpin RNA XS purified ultra low input RNAseq at Novogene	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP525334	L05_S124_L005_R1_001.fastq.gz L05_S124_L005_R2_001.fastq.gz	fastq fastq	20254563180.0	67068090.0	L05 S124 L005 R1 001.fastq.gz	0:151 1:151	A:5433584775;C:4559357895;G:4610242789;T:5649933621;N:1444100	151	151	5433584775	4559357895	4610242789	5649933621	1444100	SRX25650006	SRS22293076	SRA1943640	Medical College of Wisconsin\|Cell Biology, Neurobiology, and Anatomy	Medical College of Wisconsin	2	0.90628	0.90764	0.08395	0.08422	0.7712	0.77086	0.5176	0.51705	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2024-08-09	Adult	Adult	Eye	Sensory System
33385	33385	SRR30184291	SRX25650005	SRS22293074	SRP525334	PRJNA1145997	Regulation of optic nerve regeneration by srebf2	PRJNA1145997	Other	Laser capture microdissection of the retinal ganglion cell layer followed by mRNA seq was used to measure differentially expressed genes in adult zebrafish at three days post optic nerve crush injury. Experimental groups include naive control nonspecific morpholino control morpholino mediated srebf2 gene knockdown nonspecific morpholino control plus daily heat shock in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish and morpholino mediated srebf2 gene knockdown in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish with daily heatshock. These data provide a resource to study the effects of srebf2 manipulation on transcriptomic responses to optic nerve injury in the adult zebrafish model.		uninjured 4	wt L2 F	strain:wild type\|age:>3 month\|collection date:2023 11 06\|geo loc name:USA: Milwaukee WI\|sex:female\|tissue:retinal ganglion cell layer\|biomaterial provider:Matthew B. Veldman Medical College of Wisconsin\|treatment:uninjured 4\|BioSampleModel:Model organism or animal	LCM seq of Danio rerio:retinal ganglion cell layer	L04	L04	LCM seq NucleoSpin RNA XS purified ultra low input RNAseq at Novogene	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP525334	L04_S142_L006_R2_001.fastq.gz L04_S142_L006_R1_001.fastq.gz	fastq fastq	29812977034.0	98718467.0	L04 S142 L006 R1 001.fastq.gz	0:151 1:151	A:8014887204;C:6674942655;G:6635556218;T:8483149485;N:4441472	151	151	8014887204	6674942655	6635556218	8483149485	4441472	SRX25650005	SRS22293074	SRA1943640	Medical College of Wisconsin\|Cell Biology, Neurobiology, and Anatomy	Medical College of Wisconsin	2	0.84638	0.84891	0.16019	0.1609	0.77737	0.77733	0.62585	0.63219	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2024-08-09	Adult	Adult	Eye	Sensory System
33386	33386	SRR30184292	SRX25650004	SRS22293073	SRP525334	PRJNA1145997	Regulation of optic nerve regeneration by srebf2	PRJNA1145997	Other	Laser capture microdissection of the retinal ganglion cell layer followed by mRNA seq was used to measure differentially expressed genes in adult zebrafish at three days post optic nerve crush injury. Experimental groups include naive control nonspecific morpholino control morpholino mediated srebf2 gene knockdown nonspecific morpholino control plus daily heat shock in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish and morpholino mediated srebf2 gene knockdown in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish with daily heatshock. These data provide a resource to study the effects of srebf2 manipulation on transcriptomic responses to optic nerve injury in the adult zebrafish model.		heatshock srebf2MO 4	hs smo2 F	strain:Tghsp70l:nSrebf2 2AmCherry cmcl2:EGFP\|age:>3 month\|collection date:2023 11 06\|geo loc name:USA: Milwaukee WI\|sex:female\|tissue:retinal ganglion cell layer\|biomaterial provider:Matthew B. Veldman Medical College of Wisconsin\|treatment:heatshock srebf2MO 4\|BioSampleModel:Model organism or animal	LCM seq of Danio rerio:retinal ganglion cell layer	L28	L28	LCM seq NucleoSpin RNA XS purified ultra low input RNAseq at Novogene	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP525334	L28_S116_L004_R2_001.fastq.gz L28_S116_L004_R1_001.fastq.gz	fastq fastq	17026943012.0	56380606.0	L28 S116 L004 R1 001.fastq.gz	0:151 1:151	A:4669306614;C:3826935006;G:3777947200;T:4750777220;N:1976972	151	151	4669306614	3826935006	3777947200	4750777220	1976972	SRX25650004	SRS22293073	SRA1943640	Medical College of Wisconsin\|Cell Biology, Neurobiology, and Anatomy	Medical College of Wisconsin	2	0.93284	0.93235	0.07802	0.07812	0.75568	0.75597	0.55431	0.54921	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2024-08-09	Adult	Adult	Eye	Sensory System
33387	33387	SRR30184293	SRX25650003	SRS22293072	SRP525334	PRJNA1145997	Regulation of optic nerve regeneration by srebf2	PRJNA1145997	Other	Laser capture microdissection of the retinal ganglion cell layer followed by mRNA seq was used to measure differentially expressed genes in adult zebrafish at three days post optic nerve crush injury. Experimental groups include naive control nonspecific morpholino control morpholino mediated srebf2 gene knockdown nonspecific morpholino control plus daily heat shock in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish and morpholino mediated srebf2 gene knockdown in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish with daily heatshock. These data provide a resource to study the effects of srebf2 manipulation on transcriptomic responses to optic nerve injury in the adult zebrafish model.		heatshock srebf2MO 3	hs smo1 F	strain:Tghsp70l:nSrebf2 2AmCherry cmcl2:EGFP\|age:>3 month\|collection date:2023 11 06\|geo loc name:USA: Milwaukee WI\|sex:female\|tissue:retinal ganglion cell layer\|biomaterial provider:Matthew B. Veldman Medical College of Wisconsin\|treatment:heatshock srebf2MO 3\|BioSampleModel:Model organism or animal	LCM seq of Danio rerio:retinal ganglion cell layer	L27	L27	LCM seq NucleoSpin RNA XS purified ultra low input RNAseq at Novogene	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP525334	L27_S115_L004_R2_001.fastq.gz L27_S115_L004_R1_001.fastq.gz	fastq fastq	22610315690.0	74868595.0	L27 S115 L004 R1 001.fastq.gz	0:151 1:151	A:6205491974;C:5075129196;G:4965212019;T:6361870398;N:2612103	151	151	6205491974	5075129196	4965212019	6361870398	2612103	SRX25650003	SRS22293072	SRA1943640	Medical College of Wisconsin\|Cell Biology, Neurobiology, and Anatomy	Medical College of Wisconsin	2	0.78769	0.78807	0.09282	0.09299	0.76619	0.7651	0.54884	0.5509	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2024-08-09	Adult	Adult	Eye	Sensory System
33388	33388	SRR30184294	SRX25650002	SRS22293071	SRP525334	PRJNA1145997	Regulation of optic nerve regeneration by srebf2	PRJNA1145997	Other	Laser capture microdissection of the retinal ganglion cell layer followed by mRNA seq was used to measure differentially expressed genes in adult zebrafish at three days post optic nerve crush injury. Experimental groups include naive control nonspecific morpholino control morpholino mediated srebf2 gene knockdown nonspecific morpholino control plus daily heat shock in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish and morpholino mediated srebf2 gene knockdown in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish with daily heatshock. These data provide a resource to study the effects of srebf2 manipulation on transcriptomic responses to optic nerve injury in the adult zebrafish model.		heatshock srebf2MO 2	hs smo2 M	strain:Tghsp70l:nSrebf2 2AmCherry cmcl2:EGFP\|age:>3 month\|collection date:2023 11 06\|geo loc name:USA: Milwaukee WI\|sex:male\|tissue:retinal ganglion cell layer\|biomaterial provider:Matthew B. Veldman Medical College of Wisconsin\|treatment:heatshock srebf2MO 2\|BioSampleModel:Model organism or animal	LCM seq of Danio rerio:retinal ganglion cell layer	L26	L26	LCM seq NucleoSpin RNA XS purified ultra low input RNAseq at Novogene	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP525334	L26_S144_L006_R2_001.fastq.gz L26_S144_L006_R1_001.fastq.gz	fastq fastq	17129465368.0	56720084.0	L26 S144 L006 R1 001.fastq.gz	0:151 1:151	A:4750698191;C:3734802838;G:3895289691;T:4746170435;N:2504213	151	151	4750698191	3734802838	3895289691	4746170435	2504213	SRX25650002	SRS22293071	SRA1943640	Medical College of Wisconsin\|Cell Biology, Neurobiology, and Anatomy	Medical College of Wisconsin	2	0.93654	0.92792	0.07609	0.07622	0.75061	0.75357	0.52583	0.53272	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2024-08-09	Adult	Adult	Eye	Sensory System
33389	33389	SRR30184295	SRX25650001	SRS22293070	SRP525334	PRJNA1145997	Regulation of optic nerve regeneration by srebf2	PRJNA1145997	Other	Laser capture microdissection of the retinal ganglion cell layer followed by mRNA seq was used to measure differentially expressed genes in adult zebrafish at three days post optic nerve crush injury. Experimental groups include naive control nonspecific morpholino control morpholino mediated srebf2 gene knockdown nonspecific morpholino control plus daily heat shock in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish and morpholino mediated srebf2 gene knockdown in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish with daily heatshock. These data provide a resource to study the effects of srebf2 manipulation on transcriptomic responses to optic nerve injury in the adult zebrafish model.		heatshock srebf2MO 1	hs smo1 M	strain:Tghsp70l:nSrebf2 2AmCherry cmcl2:EGFP\|age:>3 month\|collection date:2023 11 06\|geo loc name:USA: Milwaukee WI\|sex:male\|tissue:retinal ganglion cell layer\|biomaterial provider:Matthew B. Veldman Medical College of Wisconsin\|treatment:heatshock srebf2MO 1\|BioSampleModel:Model organism or animal	LCM seq of Danio rerio:retinal ganglion cell layer	L25	L25	LCM seq NucleoSpin RNA XS purified ultra low input RNAseq at Novogene	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP525334	L25_S114_L004_R2_001.fastq.gz L25_S114_L004_R1_001.fastq.gz	fastq fastq	18411870316.0	60966458.0	L25 S114 L004 R1 001.fastq.gz	0:151 1:151	A:5037571347;C:4144572498;G:4103153869;T:5124440844;N:2131758	151	151	5037571347	4144572498	4103153869	5124440844	2131758	SRX25650001	SRS22293070	SRA1943640	Medical College of Wisconsin\|Cell Biology, Neurobiology, and Anatomy	Medical College of Wisconsin	2	0.92822	0.92792	0.0886	0.08918	0.75974	0.75978	0.55638	0.55618	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2024-08-09	Adult	Adult	Eye	Sensory System
33390	33390	SRR30184296	SRX25650000	SRS22293066	SRP525334	PRJNA1145997	Regulation of optic nerve regeneration by srebf2	PRJNA1145997	Other	Laser capture microdissection of the retinal ganglion cell layer followed by mRNA seq was used to measure differentially expressed genes in adult zebrafish at three days post optic nerve crush injury. Experimental groups include naive control nonspecific morpholino control morpholino mediated srebf2 gene knockdown nonspecific morpholino control plus daily heat shock in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish and morpholino mediated srebf2 gene knockdown in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish with daily heatshock. These data provide a resource to study the effects of srebf2 manipulation on transcriptomic responses to optic nerve injury in the adult zebrafish model.		uninjured 3	wt L1 F	strain:wild type\|age:>3 month\|collection date:2023 11 06\|geo loc name:USA: Milwaukee WI\|sex:female\|tissue:retinal ganglion cell layer\|biomaterial provider:Matthew B. Veldman Medical College of Wisconsin\|treatment:uninjured 3\|BioSampleModel:Model organism or animal	LCM seq of Danio rerio:retinal ganglion cell layer	L03	L03	LCM seq NucleoSpin RNA XS purified ultra low input RNAseq at Novogene	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP525334	L03_S105_L004_R1_001.fastq.gz L03_S105_L004_R2_001.fastq.gz	fastq fastq	19718182792.0	65291996.0	L03 S105 L004 R1 001.fastq.gz	0:151 1:151	A:5247234351;C:4504410887;G:4526181297;T:5438074144;N:2282113	151	151	5247234351	4504410887	4526181297	5438074144	2282113	SRX25650000	SRS22293066	SRA1943640	Medical College of Wisconsin\|Cell Biology, Neurobiology, and Anatomy	Medical College of Wisconsin	2	0.90475	0.90699	0.11305	0.11331	0.75014	0.74929	0.52801	0.54316	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2024-08-09	Adult	Adult	Eye	Sensory System
33391	33391	SRR30184297	SRX25649999	SRS22293069	SRP525334	PRJNA1145997	Regulation of optic nerve regeneration by srebf2	PRJNA1145997	Other	Laser capture microdissection of the retinal ganglion cell layer followed by mRNA seq was used to measure differentially expressed genes in adult zebrafish at three days post optic nerve crush injury. Experimental groups include naive control nonspecific morpholino control morpholino mediated srebf2 gene knockdown nonspecific morpholino control plus daily heat shock in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish and morpholino mediated srebf2 gene knockdown in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish with daily heatshock. These data provide a resource to study the effects of srebf2 manipulation on transcriptomic responses to optic nerve injury in the adult zebrafish model.		heatshock cMO 4	hs cmo2 F	strain:Tghsp70l:nSrebf2 2AmCherry cmcl2:EGFP\|age:>3 month\|collection date:2023 11 06\|geo loc name:USA: Milwaukee WI\|sex:female\|tissue:retinal ganglion cell layer\|biomaterial provider:Matthew B. Veldman Medical College of Wisconsin\|treatment:heatshock cMO 4\|BioSampleModel:Model organism or animal	LCM seq of Danio rerio:retinal ganglion cell layer	L24	L24	LCM seq NucleoSpin RNA XS purified ultra low input RNAseq at Novogene	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP525334	L24_S134_L005_R2_001.fastq.gz L24_S134_L005_R1_001.fastq.gz	fastq fastq	19377661484.0	64164442.0	L24 S134 L005 R1 001.fastq.gz	0:151 1:151	A:5371834087;C:4284931090;G:4227428342;T:5492109103;N:1358862	151	151	5371834087	4284931090	4227428342	5492109103	1358862	SRX25649999	SRS22293069	SRA1943640	Medical College of Wisconsin\|Cell Biology, Neurobiology, and Anatomy	Medical College of Wisconsin	2	0.9104	0.90922	0.11083	0.11062	0.75325	0.7543	0.54602	0.54303	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2024-08-09	Adult	Adult	Eye	Sensory System
33392	33392	SRR30184298	SRX25649998	SRS22293067	SRP525334	PRJNA1145997	Regulation of optic nerve regeneration by srebf2	PRJNA1145997	Other	Laser capture microdissection of the retinal ganglion cell layer followed by mRNA seq was used to measure differentially expressed genes in adult zebrafish at three days post optic nerve crush injury. Experimental groups include naive control nonspecific morpholino control morpholino mediated srebf2 gene knockdown nonspecific morpholino control plus daily heat shock in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish and morpholino mediated srebf2 gene knockdown in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish with daily heatshock. These data provide a resource to study the effects of srebf2 manipulation on transcriptomic responses to optic nerve injury in the adult zebrafish model.		heatshock cMO 3	hs cmo1 F	strain:Tghsp70l:nSrebf2 2AmCherry cmcl2:EGFP\|age:>3 month\|collection date:2023 11 06\|geo loc name:USA: Milwaukee WI\|sex:female\|tissue:retinal ganglion cell layer\|biomaterial provider:Matthew B. Veldman Medical College of Wisconsin\|treatment:heatshock cMO 3\|BioSampleModel:Model organism or animal	LCM seq of Danio rerio:retinal ganglion cell layer	L23	L23	LCM seq NucleoSpin RNA XS purified ultra low input RNAseq at Novogene	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP525334	L23_S143_L006_R2_001.fastq.gz L23_S143_L006_R1_001.fastq.gz	fastq fastq	28079439956.0	92978278.0	L23 S143 L006 R1 001.fastq.gz	0:151 1:151	A:7811720040;C:6084170964;G:6064272363;T:8115079585;N:4197004	151	151	7811720040	6084170964	6064272363	8115079585	4197004	SRX25649998	SRS22293067	SRA1943640	Medical College of Wisconsin\|Cell Biology, Neurobiology, and Anatomy	Medical College of Wisconsin	2	0.86593	0.86525	0.14584	0.14587	0.77498	0.77433	0.59534	0.59433	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2024-08-09	Adult	Adult	Eye	Sensory System
33393	33393	SRR30184299	SRX25649997	SRS22293068	SRP525334	PRJNA1145997	Regulation of optic nerve regeneration by srebf2	PRJNA1145997	Other	Laser capture microdissection of the retinal ganglion cell layer followed by mRNA seq was used to measure differentially expressed genes in adult zebrafish at three days post optic nerve crush injury. Experimental groups include naive control nonspecific morpholino control morpholino mediated srebf2 gene knockdown nonspecific morpholino control plus daily heat shock in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish and morpholino mediated srebf2 gene knockdown in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish with daily heatshock. These data provide a resource to study the effects of srebf2 manipulation on transcriptomic responses to optic nerve injury in the adult zebrafish model.		heatshock cMO 2	hs cmo2 M	strain:Tghsp70l:nSrebf2 2AmCherry cmcl2:EGFP\|age:>3 month\|collection date:2023 11 06\|geo loc name:USA: Milwaukee WI\|sex:male\|tissue:retinal ganglion cell layer\|biomaterial provider:Matthew B. Veldman Medical College of Wisconsin\|treatment:heatshock cMO 2\|BioSampleModel:Model organism or animal	LCM seq of Danio rerio:retinal ganglion cell layer	L22	L22	LCM seq NucleoSpin RNA XS purified ultra low input RNAseq at Novogene	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP525334	L22_S133_L005_R2_001.fastq.gz L22_S133_L005_R1_001.fastq.gz	fastq fastq	20494382588.0	67862194.0	L22 S133 L005 R1 001.fastq.gz	0:151 1:151	A:5610165229;C:4583590395;G:4590759271;T:5708435247;N:1432446	151	151	5610165229	4583590395	4590759271	5708435247	1432446	SRX25649997	SRS22293068	SRA1943640	Medical College of Wisconsin\|Cell Biology, Neurobiology, and Anatomy	Medical College of Wisconsin	2	0.92306	0.92279	0.0879	0.08765	0.7671	0.76579	0.56402	0.56401	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2024-08-09	Adult	Adult	Eye	Sensory System
33394	33394	SRR30184300	SRX25649996	SRS22293064	SRP525334	PRJNA1145997	Regulation of optic nerve regeneration by srebf2	PRJNA1145997	Other	Laser capture microdissection of the retinal ganglion cell layer followed by mRNA seq was used to measure differentially expressed genes in adult zebrafish at three days post optic nerve crush injury. Experimental groups include naive control nonspecific morpholino control morpholino mediated srebf2 gene knockdown nonspecific morpholino control plus daily heat shock in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish and morpholino mediated srebf2 gene knockdown in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish with daily heatshock. These data provide a resource to study the effects of srebf2 manipulation on transcriptomic responses to optic nerve injury in the adult zebrafish model.		heatshock cMO 1	hs cmo1 M	strain:Tghsp70l:nSrebf2 2AmCherry cmcl2:EGFP\|age:>3 month\|collection date:2023 11 06\|geo loc name:USA: Milwaukee WI\|sex:male\|tissue:retinal ganglion cell layer\|biomaterial provider:Matthew B. Veldman Medical College of Wisconsin\|treatment:heatshock cMO 1\|BioSampleModel:Model organism or animal	LCM seq of Danio rerio:retinal ganglion cell layer	L21	L21	LCM seq NucleoSpin RNA XS purified ultra low input RNAseq at Novogene	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP525334	L21_S113_L004_R1_001.fastq.gz L21_S113_L004_R2_001.fastq.gz	fastq fastq	22282038670.0	73781585.0	L21 S113 L004 R1 001.fastq.gz	0:151 1:151	A:5984432885;C:5103219794;G:5123288852;T:6068507910;N:2589229	151	151	5984432885	5103219794	5123288852	6068507910	2589229	SRX25649996	SRS22293064	SRA1943640	Medical College of Wisconsin\|Cell Biology, Neurobiology, and Anatomy	Medical College of Wisconsin	2	0.93523	0.93442	0.06557	0.06558	0.76463	0.76532	0.54365	0.53711	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2024-08-09	Adult	Adult	Eye	Sensory System
33395	33395	SRR30184301	SRX25649995	SRS22293061	SRP525334	PRJNA1145997	Regulation of optic nerve regeneration by srebf2	PRJNA1145997	Other	Laser capture microdissection of the retinal ganglion cell layer followed by mRNA seq was used to measure differentially expressed genes in adult zebrafish at three days post optic nerve crush injury. Experimental groups include naive control nonspecific morpholino control morpholino mediated srebf2 gene knockdown nonspecific morpholino control plus daily heat shock in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish and morpholino mediated srebf2 gene knockdown in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish with daily heatshock. These data provide a resource to study the effects of srebf2 manipulation on transcriptomic responses to optic nerve injury in the adult zebrafish model.		srebf2MO 4	wt smo2 F	strain:wild type\|age:>3 month\|collection date:2023 11 06\|geo loc name:USA: Milwaukee WI\|sex:female\|tissue:retinal ganglion cell layer\|biomaterial provider:Matthew B. Veldman Medical College of Wisconsin\|treatment:srebf2MO 4\|BioSampleModel:Model organism or animal	LCM seq of Danio rerio:retinal ganglion cell layer	L16	L16	LCM seq NucleoSpin RNA XS purified ultra low input RNAseq at Novogene	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP525334	L16_S108_L004_R1_001.fastq.gz L16_S108_L004_R2_001.fastq.gz	fastq fastq	25364244630.0	83987565.0	L16 S108 L004 R1 001.fastq.gz	0:151 1:151	A:6783811492;C:5825885841;G:5791188806;T:6960421955;N:2936536	151	151	6783811492	5825885841	5791188806	6960421955	2936536	SRX25649995	SRS22293061	SRA1943640	Medical College of Wisconsin\|Cell Biology, Neurobiology, and Anatomy	Medical College of Wisconsin	2	0.93174	0.93131	0.06871	0.06898	0.75461	0.75386	0.54103	0.54073	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2024-08-09	Adult	Adult	Eye	Sensory System
33396	33396	SRR30184302	SRX25649994	SRS22293065	SRP525334	PRJNA1145997	Regulation of optic nerve regeneration by srebf2	PRJNA1145997	Other	Laser capture microdissection of the retinal ganglion cell layer followed by mRNA seq was used to measure differentially expressed genes in adult zebrafish at three days post optic nerve crush injury. Experimental groups include naive control nonspecific morpholino control morpholino mediated srebf2 gene knockdown nonspecific morpholino control plus daily heat shock in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish and morpholino mediated srebf2 gene knockdown in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish with daily heatshock. These data provide a resource to study the effects of srebf2 manipulation on transcriptomic responses to optic nerve injury in the adult zebrafish model.		srebf2MO 3	wt smo1 F	strain:wild type\|age:>3 month\|collection date:2023 11 06\|geo loc name:USA: Milwaukee WI\|sex:female\|tissue:retinal ganglion cell layer\|biomaterial provider:Matthew B. Veldman Medical College of Wisconsin\|treatment:srebf2MO 3\|BioSampleModel:Model organism or animal	LCM seq of Danio rerio:retinal ganglion cell layer	L15	L15	LCM seq NucleoSpin RNA XS purified ultra low input RNAseq at Novogene	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP525334	L15_S132_L005_R2_001.fastq.gz L15_S132_L005_R1_001.fastq.gz	fastq fastq	24643120876.0	81599738.0	L15 S132 L005 R1 001.fastq.gz	0:151 1:151	A:6791560596;C:5441282614;G:5412453327;T:6996084050;N:1740289	151	151	6791560596	5441282614	5412453327	6996084050	1740289	SRX25649994	SRS22293065	SRA1943640	Medical College of Wisconsin\|Cell Biology, Neurobiology, and Anatomy	Medical College of Wisconsin	2	0.90806	0.90874	0.11049	0.11033	0.75885	0.75741	0.54345	0.55215	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2024-08-09	Adult	Adult	Eye	Sensory System
33397	33397	SRR30184303	SRX25649993	SRS22293062	SRP525334	PRJNA1145997	Regulation of optic nerve regeneration by srebf2	PRJNA1145997	Other	Laser capture microdissection of the retinal ganglion cell layer followed by mRNA seq was used to measure differentially expressed genes in adult zebrafish at three days post optic nerve crush injury. Experimental groups include naive control nonspecific morpholino control morpholino mediated srebf2 gene knockdown nonspecific morpholino control plus daily heat shock in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish and morpholino mediated srebf2 gene knockdown in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish with daily heatshock. These data provide a resource to study the effects of srebf2 manipulation on transcriptomic responses to optic nerve injury in the adult zebrafish model.		srebf2MO 2	wt smo2 M	strain:wild type\|age:>3 month\|collection date:2023 11 06\|geo loc name:USA: Milwaukee WI\|sex:male\|tissue:retinal ganglion cell layer\|biomaterial provider:Matthew B. Veldman Medical College of Wisconsin\|treatment:srebf2MO 2\|BioSampleModel:Model organism or animal	LCM seq of Danio rerio:retinal ganglion cell layer	L14	L14	LCM seq NucleoSpin RNA XS purified ultra low input RNAseq at Novogene	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP525334	L14_S131_L005_R2_001.fastq.gz L14_S131_L005_R1_001.fastq.gz	fastq fastq	20984328060.0	69484530.0	L14 S131 L005 R1 001.fastq.gz	0:151 1:151	A:5728503785;C:4710613293;G:4687638412;T:5856111147;N:1461423	151	151	5728503785	4710613293	4687638412	5856111147	1461423	SRX25649993	SRS22293062	SRA1943640	Medical College of Wisconsin\|Cell Biology, Neurobiology, and Anatomy	Medical College of Wisconsin	2	0.92516	0.92471	0.08416	0.08435	0.76568	0.76585	0.56286	0.56146	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2024-08-09	Adult	Adult	Eye	Sensory System
33398	33398	SRR30184304	SRX25649992	SRS22293059	SRP525334	PRJNA1145997	Regulation of optic nerve regeneration by srebf2	PRJNA1145997	Other	Laser capture microdissection of the retinal ganglion cell layer followed by mRNA seq was used to measure differentially expressed genes in adult zebrafish at three days post optic nerve crush injury. Experimental groups include naive control nonspecific morpholino control morpholino mediated srebf2 gene knockdown nonspecific morpholino control plus daily heat shock in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish and morpholino mediated srebf2 gene knockdown in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish with daily heatshock. These data provide a resource to study the effects of srebf2 manipulation on transcriptomic responses to optic nerve injury in the adult zebrafish model.		srebf2MO 1	wt smo1 M	strain:wild type\|age:>3 month\|collection date:2023 11 06\|geo loc name:USA: Milwaukee WI\|sex:male\|tissue:retinal ganglion cell layer\|biomaterial provider:Matthew B. Veldman Medical College of Wisconsin\|treatment:srebf2MO 1\|BioSampleModel:Model organism or animal	LCM seq of Danio rerio:retinal ganglion cell layer	L13	L13	LCM seq NucleoSpin RNA XS purified ultra low input RNAseq at Novogene	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP525334	L13_S130_L005_R1_001.fastq.gz L13_S130_L005_R2_001.fastq.gz	fastq fastq	17976563590.0	59525045.0	L13 S130 L005 R1 001.fastq.gz	0:151 1:151	A:4931490430;C:3978811459;G:3956968246;T:5108014615;N:1278840	151	151	4931490430	3978811459	3956968246	5108014615	1278840	SRX25649992	SRS22293059	SRA1943640	Medical College of Wisconsin\|Cell Biology, Neurobiology, and Anatomy	Medical College of Wisconsin	2	0.8948	0.89491	0.13113	0.13061	0.76254	0.76246	0.57407	0.57069	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2024-08-09	Adult	Adult	Eye	Sensory System
33399	33399	SRR30184305	SRX25649991	SRS22293060	SRP525334	PRJNA1145997	Regulation of optic nerve regeneration by srebf2	PRJNA1145997	Other	Laser capture microdissection of the retinal ganglion cell layer followed by mRNA seq was used to measure differentially expressed genes in adult zebrafish at three days post optic nerve crush injury. Experimental groups include naive control nonspecific morpholino control morpholino mediated srebf2 gene knockdown nonspecific morpholino control plus daily heat shock in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish and morpholino mediated srebf2 gene knockdown in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish with daily heatshock. These data provide a resource to study the effects of srebf2 manipulation on transcriptomic responses to optic nerve injury in the adult zebrafish model.		cMO 4	wt cmo2 F	strain:wild type\|age:>3 month\|collection date:2023 11 06\|geo loc name:USA: Milwaukee WI\|sex:female\|tissue:retinal ganglion cell layer\|biomaterial provider:Matthew B. Veldman Medical College of Wisconsin\|treatment:cMO 4\|BioSampleModel:Model organism or animal	LCM seq of Danio rerio:retinal ganglion cell layer	L12	L12	LCM seq NucleoSpin RNA XS purified ultra low input RNAseq at Novogene	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP525334	L12_S129_L005_R2_001.fastq.gz L12_S129_L005_R1_001.fastq.gz	fastq fastq	19905894214.0	65913557.0	L12 S129 L005 R1 001.fastq.gz	0:151 1:151	A:5382577098;C:4496451576;G:4493042842;T:5532424959;N:1397739	151	151	5382577098	4496451576	4493042842	5532424959	1397739	SRX25649991	SRS22293060	SRA1943640	Medical College of Wisconsin\|Cell Biology, Neurobiology, and Anatomy	Medical College of Wisconsin	2	0.9238	0.92347	0.08792	0.08777	0.75933	0.75921	0.56478	0.567	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2024-08-09	Adult	Adult	Eye	Sensory System
33400	33400	SRR30184306	SRX25649990	SRS22293063	SRP525334	PRJNA1145997	Regulation of optic nerve regeneration by srebf2	PRJNA1145997	Other	Laser capture microdissection of the retinal ganglion cell layer followed by mRNA seq was used to measure differentially expressed genes in adult zebrafish at three days post optic nerve crush injury. Experimental groups include naive control nonspecific morpholino control morpholino mediated srebf2 gene knockdown nonspecific morpholino control plus daily heat shock in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish and morpholino mediated srebf2 gene knockdown in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish with daily heatshock. These data provide a resource to study the effects of srebf2 manipulation on transcriptomic responses to optic nerve injury in the adult zebrafish model.		cMO 3	wt cmo1 F	strain:wild type\|age:>3 month\|collection date:2023 11 06\|geo loc name:USA: Milwaukee WI\|sex:female\|tissue:retinal ganglion cell layer\|biomaterial provider:Matthew B. Veldman Medical College of Wisconsin\|treatment:cMO 3\|BioSampleModel:Model organism or animal	LCM seq of Danio rerio:retinal ganglion cell layer	L11	L11	LCM seq NucleoSpin RNA XS purified ultra low input RNAseq at Novogene	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP525334	L11_S107_L004_R1_001.fastq.gz L11_S107_L004_R2_001.fastq.gz	fastq fastq	17297093488.0	57275144.0	L11 S107 L004 R1 001.fastq.gz	0:151 1:151	A:4727002988;C:3860128821;G:3837802284;T:4870157333;N:2002062	151	151	4727002988	3860128821	3837802284	4870157333	2002062	SRX25649990	SRS22293063	SRA1943640	Medical College of Wisconsin\|Cell Biology, Neurobiology, and Anatomy	Medical College of Wisconsin	2	0.86746	0.86798	0.10604	0.1069	0.76396	0.7639	0.56148	0.55457	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2024-08-09	Adult	Adult	Eye	Sensory System
33401	33401	SRR30184307	SRX25649989	SRS22293058	SRP525334	PRJNA1145997	Regulation of optic nerve regeneration by srebf2	PRJNA1145997	Other	Laser capture microdissection of the retinal ganglion cell layer followed by mRNA seq was used to measure differentially expressed genes in adult zebrafish at three days post optic nerve crush injury. Experimental groups include naive control nonspecific morpholino control morpholino mediated srebf2 gene knockdown nonspecific morpholino control plus daily heat shock in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish and morpholino mediated srebf2 gene knockdown in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish with daily heatshock. These data provide a resource to study the effects of srebf2 manipulation on transcriptomic responses to optic nerve injury in the adult zebrafish model.		uninjured 2	wt L2 M	strain:wild type\|age:>3 month\|collection date:2023 11 06\|geo loc name:USA: Milwaukee WI\|sex:male\|tissue:retinal ganglion cell layer\|biomaterial provider:Matthew B. Veldman Medical College of Wisconsin\|treatment:uninjured 2\|BioSampleModel:Model organism or animal	LCM seq of Danio rerio:retinal ganglion cell layer	L02	L02	LCM seq NucleoSpin RNA XS purified ultra low input RNAseq at Novogene	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP525334	L02_S141_L006_R2_001.fastq.gz L02_S141_L006_R1_001.fastq.gz	fastq fastq	24399093702.0	80791701.0	L02 S141 L006 R1 001.fastq.gz	0:151 1:151	A:6567405598;C:5419524814;G:5626869131;T:6781638199;N:3655960	151	151	6567405598	5419524814	5626869131	6781638199	3655960	SRX25649989	SRS22293058	SRA1943640	Medical College of Wisconsin\|Cell Biology, Neurobiology, and Anatomy	Medical College of Wisconsin	2	0.88324	0.88428	0.12546	0.12616	0.77141	0.77021	0.58483	0.58455	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2024-08-09	Adult	Adult	Eye	Sensory System
33402	33402	SRR30184308	SRX25649988	SRS22293057	SRP525334	PRJNA1145997	Regulation of optic nerve regeneration by srebf2	PRJNA1145997	Other	Laser capture microdissection of the retinal ganglion cell layer followed by mRNA seq was used to measure differentially expressed genes in adult zebrafish at three days post optic nerve crush injury. Experimental groups include naive control nonspecific morpholino control morpholino mediated srebf2 gene knockdown nonspecific morpholino control plus daily heat shock in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish and morpholino mediated srebf2 gene knockdown in Tghsp70l:nSrebf2 2AmCherry cmlc2:EGFP fish with daily heatshock. These data provide a resource to study the effects of srebf2 manipulation on transcriptomic responses to optic nerve injury in the adult zebrafish model.		uninjured 1	wt L1 M	strain:wild type\|age:>3 month\|collection date:2023 11 06\|geo loc name:USA: Milwaukee WI\|sex:male\|tissue:retinal ganglion cell layer\|biomaterial provider:Matthew B. Veldman Medical College of Wisconsin\|treatment:uninjured 1\|BioSampleModel:Model organism or animal	LCM seq of Danio rerio:retinal ganglion cell layer	L01	L01	LCM seq NucleoSpin RNA XS purified ultra low input RNAseq at Novogene	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP525334	L01_S123_L005_R2_001.fastq.gz L01_S123_L005_R1_001.fastq.gz	fastq fastq	17596481188.0	58266494.0	L01 S123 L005 R1 001.fastq.gz	0:151 1:151	A:4773806012;C:3941529807;G:3951952531;T:4927955026;N:1237812	151	151	4773806012	3941529807	3951952531	4927955026	1237812	SRX25649988	SRS22293057	SRA1943640	Medical College of Wisconsin\|Cell Biology, Neurobiology, and Anatomy	Medical College of Wisconsin	2	0.9124	0.91249	0.10052	0.10034	0.76751	0.76773	0.58532	0.58581	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2024-08-09	Adult	Adult	Eye	Sensory System
34109	34109	SRR31178863	SRX26561573	SRS23067068	SRP542308	PRJNA1180292	Zebrafish MAFLD model induced by high fat and high cholesterol diet	PRJNA1180292	Other	Metabolic associated fatty liver disease MAFLD has become one of the most widespread metabolic diseases today posing a serious threat to human health. In order to further investigate the pathogenesis of MAFLD explore effective treatment methods and prevention strategies it is necessary to establish stable and reliable animal models. As a model organism adult zebrafish has the advantages of high homology with human genes and similar physiological structures making it an ideal choice for establishing MAFLD models. Therefore we constructed a zebrafish MAFLD model using high fat and high cholesterol diets 4% and 20% respectively and used RNA seq to reveal the transcriptional differences between this model and the liver of zebrafish fed a normal diet. This HFCD zebrafish model can be used for screening and evaluating the efficacy of anti MAFLD drugs	4		HFCD1	strain:AB\|age:6 mpf\|dev stage:Adult\|collection date:2021 03 22\|geo loc name:China\|sex:female\|tissue:Liver\|Biological duplication:HFCD1\|BioSampleModel:Model organism or animal	RNA Seg of zebrafish: adult female liver	HFCD1	HFCD1	Liver	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP542308	L1EFC230225--NC1.R1.raw.fastq.gz L1EFC230225--NC1.R2.raw.fastq.gz	fastq fastq	6794681390.0	22498945.0	L1EFC230225 NC1.R1.raw.fastq.gz	0:151 1:151	A:1813040924;C:1560264966;G:1623607140;T:1797660733;N:107627	151	151	1813040924	1560264966	1623607140	1797660733	107627	SRX26561573	SRS23067068	SRA2001936	Shandong University of Technology\|School of Life Sciences and medicine	Shandong University of Technology												B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2024-10-31	Adult	Adult	Liver	Liver and Biliary System
34110	34110	SRR31178864	SRX26561572	SRS23067067	SRP542308	PRJNA1180292	Zebrafish MAFLD model induced by high fat and high cholesterol diet	PRJNA1180292	Other	Metabolic associated fatty liver disease MAFLD has become one of the most widespread metabolic diseases today posing a serious threat to human health. In order to further investigate the pathogenesis of MAFLD explore effective treatment methods and prevention strategies it is necessary to establish stable and reliable animal models. As a model organism adult zebrafish has the advantages of high homology with human genes and similar physiological structures making it an ideal choice for establishing MAFLD models. Therefore we constructed a zebrafish MAFLD model using high fat and high cholesterol diets 4% and 20% respectively and used RNA seq to reveal the transcriptional differences between this model and the liver of zebrafish fed a normal diet. This HFCD zebrafish model can be used for screening and evaluating the efficacy of anti MAFLD drugs	3		NC3	strain:AB\|age:6 mpf\|dev stage:Adult\|collection date:2021 03 22\|geo loc name:China\|sex:female\|tissue:Liver\|Biological duplication:NC3\|BioSampleModel:Model organism or animal	RNA Seg of zebrafish: adult female liver	NC3	NC3	Liver	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP542308	L1EFC230224--HFCD3.R1.raw.fastq.gz L1EFC230224--HFCD3.R2.raw.fastq.gz	fastq fastq	6457281856.0	21381728.0	L1EFC230224 HFCD3.R1.raw.fastq.gz	0:151 1:151	A:1769303811;C:1446440046;G:1496603676;T:1744830652;N:103671	151	151	1769303811	1446440046	1496603676	1744830652	103671	SRX26561572	SRS23067067	SRA2001936	Shandong University of Technology\|School of Life Sciences and medicine	Shandong University of Technology												B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2024-10-31	Adult	Adult	Liver	Liver and Biliary System
34111	34111	SRR31178865	SRX26561571	SRS23067066	SRP542308	PRJNA1180292	Zebrafish MAFLD model induced by high fat and high cholesterol diet	PRJNA1180292	Other	Metabolic associated fatty liver disease MAFLD has become one of the most widespread metabolic diseases today posing a serious threat to human health. In order to further investigate the pathogenesis of MAFLD explore effective treatment methods and prevention strategies it is necessary to establish stable and reliable animal models. As a model organism adult zebrafish has the advantages of high homology with human genes and similar physiological structures making it an ideal choice for establishing MAFLD models. Therefore we constructed a zebrafish MAFLD model using high fat and high cholesterol diets 4% and 20% respectively and used RNA seq to reveal the transcriptional differences between this model and the liver of zebrafish fed a normal diet. This HFCD zebrafish model can be used for screening and evaluating the efficacy of anti MAFLD drugs	2		NC2	strain:AB\|age:6 mpf\|dev stage:Adult\|collection date:2021 03 22\|geo loc name:China\|sex:female\|tissue:Liver\|Biological duplication:NC2\|BioSampleModel:Model organism or animal	RNA Seg of zebrafish: adult female liver	NC2	NC2	Liver	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP542308	L1EFC230223--HFCD2.R1.raw.fastq.gz L1EFC230223--HFCD2.R2.raw.fastq.gz	fastq fastq	6773570382.0	22429041.0	L1EFC230223 HFCD2.R1.raw.fastq.gz	0:151 1:151	A:1757082060;C:1606989956;G:1661473921;T:1747919214;N:105231	151	151	1757082060	1606989956	1661473921	1747919214	105231	SRX26561571	SRS23067066	SRA2001936	Shandong University of Technology\|School of Life Sciences and medicine	Shandong University of Technology												B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2024-10-31	Adult	Adult	Liver	Liver and Biliary System
34112	34112	SRR31178866	SRX26561570	SRS23067065	SRP542308	PRJNA1180292	Zebrafish MAFLD model induced by high fat and high cholesterol diet	PRJNA1180292	Other	Metabolic associated fatty liver disease MAFLD has become one of the most widespread metabolic diseases today posing a serious threat to human health. In order to further investigate the pathogenesis of MAFLD explore effective treatment methods and prevention strategies it is necessary to establish stable and reliable animal models. As a model organism adult zebrafish has the advantages of high homology with human genes and similar physiological structures making it an ideal choice for establishing MAFLD models. Therefore we constructed a zebrafish MAFLD model using high fat and high cholesterol diets 4% and 20% respectively and used RNA seq to reveal the transcriptional differences between this model and the liver of zebrafish fed a normal diet. This HFCD zebrafish model can be used for screening and evaluating the efficacy of anti MAFLD drugs	1		NC1	strain:AB\|age:6 mpf\|dev stage:Adult\|collection date:2021 03 22\|geo loc name:China\|sex:female\|tissue:Liver\|Biological duplication:NC1\|BioSampleModel:Model organism or animal	RNA Seg of zebrafish: adult female liver	NC1	NC1	Liver	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP542308	L1EFC230222--HFCD1.R1.raw.fastq.gz L1EFC230222--HFCD1.R2.raw.fastq.gz	fastq fastq	6406534984.0	21213692.0	L1EFC230222 HFCD1.R1.raw.fastq.gz	0:151 1:151	A:1668135330;C:1512564987;G:1563450333;T:1662280827;N:103507	151	151	1668135330	1512564987	1563450333	1662280827	103507	SRX26561570	SRS23067065	SRA2001936	Shandong University of Technology\|School of Life Sciences and medicine	Shandong University of Technology												B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2024-10-31	Adult	Adult	Liver	Liver and Biliary System
34113	34113	SRR31178867	SRX26561569	SRS23067064	SRP542308	PRJNA1180292	Zebrafish MAFLD model induced by high fat and high cholesterol diet	PRJNA1180292	Other	Metabolic associated fatty liver disease MAFLD has become one of the most widespread metabolic diseases today posing a serious threat to human health. In order to further investigate the pathogenesis of MAFLD explore effective treatment methods and prevention strategies it is necessary to establish stable and reliable animal models. As a model organism adult zebrafish has the advantages of high homology with human genes and similar physiological structures making it an ideal choice for establishing MAFLD models. Therefore we constructed a zebrafish MAFLD model using high fat and high cholesterol diets 4% and 20% respectively and used RNA seq to reveal the transcriptional differences between this model and the liver of zebrafish fed a normal diet. This HFCD zebrafish model can be used for screening and evaluating the efficacy of anti MAFLD drugs	6		HFCD3	strain:AB\|age:6 mpf\|dev stage:Adult\|collection date:2021 03 22\|geo loc name:China\|sex:female\|tissue:Liver\|Biological duplication:HFCD3\|BioSampleModel:Model organism or animal	RNA Seg of zebrafish: adult female liver	HFCD3	HFCD3	Liver	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP542308	L1EFC230227--NC3.R1.raw.fastq.gz L1EFC230227--NC3.R2.raw.fastq.gz	fastq fastq	6610407332.0	21888766.0	L1EFC230227 NC3.R1.raw.fastq.gz	0:151 1:151	A:1778456174;C:1511688037;G:1563567386;T:1756591090;N:104645	151	151	1778456174	1511688037	1563567386	1756591090	104645	SRX26561569	SRS23067064	SRA2001936	Shandong University of Technology\|School of Life Sciences and medicine	Shandong University of Technology												B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2024-10-31	Adult	Adult	Liver	Liver and Biliary System
34114	34114	SRR31178868	SRX26561568	SRS23067063	SRP542308	PRJNA1180292	Zebrafish MAFLD model induced by high fat and high cholesterol diet	PRJNA1180292	Other	Metabolic associated fatty liver disease MAFLD has become one of the most widespread metabolic diseases today posing a serious threat to human health. In order to further investigate the pathogenesis of MAFLD explore effective treatment methods and prevention strategies it is necessary to establish stable and reliable animal models. As a model organism adult zebrafish has the advantages of high homology with human genes and similar physiological structures making it an ideal choice for establishing MAFLD models. Therefore we constructed a zebrafish MAFLD model using high fat and high cholesterol diets 4% and 20% respectively and used RNA seq to reveal the transcriptional differences between this model and the liver of zebrafish fed a normal diet. This HFCD zebrafish model can be used for screening and evaluating the efficacy of anti MAFLD drugs	5		HFCD2	strain:AB\|age:6 mpf\|dev stage:Adult\|collection date:2021 03 22\|geo loc name:China\|sex:female\|tissue:Liver\|Biological duplication:HFCD2\|BioSampleModel:Model organism or animal	RNA Seg of zebrafish: adult female liver	HFCD2	HFCD2	Liver	RNA-Seq	TRANSCRIPTOMIC	cDNA_oligo_dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP542308	L1EFC230226--NC2.R1.raw.fastq.gz L1EFC230226--NC2.R2.raw.fastq.gz	fastq fastq	6541815280.0	21661640.0	L1EFC230226 NC2.R1.raw.fastq.gz	0:151 1:151	A:1736086509;C:1523468930;G:1570126048;T:1712035247;N:98546	151	151	1736086509	1523468930	1570126048	1712035247	98546	SRX26561568	SRS23067063	SRA2001936	Shandong University of Technology\|School of Life Sciences and medicine	Shandong University of Technology												B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2024-10-31	Adult	Adult	Liver	Liver and Biliary System

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;