run_metadata
1,248 rows where experiment.library_selection = "cDNA", experiment.platform = "ILLUMINA" and tissue_curation_coarse = "Undetermined"
This data as json, CSV (advanced)
| Link | rowid ▼ | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14 | 14 | DRR334977 | DRX323973 | DRS217313 | DRP008001 | PRJDB12578 | Allometric scaling of RNA abundance from genes to communities | DRP008001 | Other | The metabolic theory of ecology MTE and growth rate hypothesis GRH help explain the mechanistic basis of size allometry and temperature dependence on growth rate and whole body RNA content in organisms. However testing RNA allometric scaling with next generation sequencing is yet to be done. Here we validated the assumptions of GRH and MTE on messenger RNA and ribosome abundance using mock community metatranscriptome analysis. Our findings highlight that fast growing smaller species harbor greater RNA abundance per mass of tissue compared with species having larger body sizes and slower growth rates. We found that genome size and body size impose significant constraints in interspecific RNA abundance scaling while the assumed temperature dependence appeared to be weak. Lastly allometric scaling integration in community level models may extend the use of metatranscriptomics as a reliable tool for estimating ecosystem processes. | totalRNA metatranscriptomic sequences from mock communities consist of five model species | rRNA mock community at 28 degrees rep 3 | SAMD00422597 | sample name:rRNA mock community 28 degrees rep 3|biological replicate:3|collection date:2021 01 15|dev stage:Adult|technical replicate:3|temp:28|treatment:rRNA | NextSeq 2000 sequencing of SAMD00422597 | DRX323973 | t28 3 tRNA.fastq | 1 | NEBNext Kit for Illumina | RNA-Seq | METATRANSCRIPTOMIC | cDNA | SINGLE | ILLUMINA | NextSeq 2000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>101</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP008001 | NextSeq 2000 sequencing of SAMD00422597 | 3791170746.0 | 37701921.0 | DRR334977 | 0:100.56 1:0 | A:967477491;C:926887571;G:898697642;T:998107868;N:174 | 100 | 0 | 967477491 | 926887571 | 898697642 | 998107868 | 174 | DRX323973 | DRS217313 | DRA013226 | SINICA|Machida Laboratory Biodiversity Research Center, Academia Sinica | SINICA|Machida Laboratory Biodiversity Research Center, Academia Sinica | 1 | 0.31527 | 0.06446 | 0.88844 | 0.62118 | 101 | B | usable mapping rate | illumina | nextseq_v2 | unknown | random_priming | nebnext | bulk | unknown | unknown | Taiwan | 2021-12-23 | Adult | Adult | Undetermined | Undetermined | ||||||||||||||||||||||||
| 15 | 15 | DRR334976 | DRX323972 | DRS217312 | DRP008001 | PRJDB12578 | Allometric scaling of RNA abundance from genes to communities | DRP008001 | Other | The metabolic theory of ecology MTE and growth rate hypothesis GRH help explain the mechanistic basis of size allometry and temperature dependence on growth rate and whole body RNA content in organisms. However testing RNA allometric scaling with next generation sequencing is yet to be done. Here we validated the assumptions of GRH and MTE on messenger RNA and ribosome abundance using mock community metatranscriptome analysis. Our findings highlight that fast growing smaller species harbor greater RNA abundance per mass of tissue compared with species having larger body sizes and slower growth rates. We found that genome size and body size impose significant constraints in interspecific RNA abundance scaling while the assumed temperature dependence appeared to be weak. Lastly allometric scaling integration in community level models may extend the use of metatranscriptomics as a reliable tool for estimating ecosystem processes. | totalRNA metatranscriptomic sequences from mock communities consist of five model species | rRNA mock community at 28 degrees rep 2 | SAMD00422596 | sample name:rRNA mock community 28 degrees rep 2|biological replicate:3|collection date:2021 01 15|dev stage:Adult|technical replicate:2|temp:28|treatment:rRNA | NextSeq 2000 sequencing of SAMD00422596 | DRX323972 | t28 2 tRNA.fastq | 1 | NEBNext Kit for Illumina | RNA-Seq | METATRANSCRIPTOMIC | cDNA | SINGLE | ILLUMINA | NextSeq 2000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>101</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP008001 | NextSeq 2000 sequencing of SAMD00422596 | 2801693695.0 | 27860658.0 | DRR334976 | 0:100.56 1:0 | A:700189496;C:702936549;G:679920984;T:718646067;N:599 | 100 | 0 | 700189496 | 702936549 | 679920984 | 718646067 | 599 | DRX323972 | DRS217312 | DRA013226 | SINICA|Machida Laboratory Biodiversity Research Center, Academia Sinica | SINICA|Machida Laboratory Biodiversity Research Center, Academia Sinica | 1 | 0.43508 | 0.08819 | 0.85859 | 0.69447 | 101 | B | usable mapping rate | illumina | nextseq_v2 | unknown | random_priming | nebnext | bulk | unknown | unknown | Taiwan | 2021-12-23 | Adult | Adult | Undetermined | Undetermined | ||||||||||||||||||||||||
| 16 | 16 | DRR334975 | DRX323971 | DRS217311 | DRP008001 | PRJDB12578 | Allometric scaling of RNA abundance from genes to communities | DRP008001 | Other | The metabolic theory of ecology MTE and growth rate hypothesis GRH help explain the mechanistic basis of size allometry and temperature dependence on growth rate and whole body RNA content in organisms. However testing RNA allometric scaling with next generation sequencing is yet to be done. Here we validated the assumptions of GRH and MTE on messenger RNA and ribosome abundance using mock community metatranscriptome analysis. Our findings highlight that fast growing smaller species harbor greater RNA abundance per mass of tissue compared with species having larger body sizes and slower growth rates. We found that genome size and body size impose significant constraints in interspecific RNA abundance scaling while the assumed temperature dependence appeared to be weak. Lastly allometric scaling integration in community level models may extend the use of metatranscriptomics as a reliable tool for estimating ecosystem processes. | totalRNA metatranscriptomic sequences from mock communities consist of five model species | rRNA mock community at 28 degrees rep 1 | SAMD00422595 | sample name:rRNA mock community 28 degrees rep 1|biological replicate:3|collection date:2021 01 15|dev stage:Adult|technical replicate:1|temp:28|treatment:rRNA | NextSeq 2000 sequencing of SAMD00422595 | DRX323971 | t28 1 tRNA.fastq | 1 | NEBNext Kit for Illumina | RNA-Seq | METATRANSCRIPTOMIC | cDNA | SINGLE | ILLUMINA | NextSeq 2000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>101</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP008001 | NextSeq 2000 sequencing of SAMD00422595 | 3148691934.0 | 31307464.0 | DRR334975 | 0:100.57 1:0 | A:785000734;C:791315678;G:766594599;T:805780465;N:458 | 100 | 0 | 785000734 | 791315678 | 766594599 | 805780465 | 458 | DRX323971 | DRS217311 | DRA013226 | SINICA|Machida Laboratory Biodiversity Research Center, Academia Sinica | SINICA|Machida Laboratory Biodiversity Research Center, Academia Sinica | 1 | 0.37139 | 0.09061 | 0.94065 | 0.74047 | 101 | B | usable mapping rate | illumina | nextseq_v2 | unknown | random_priming | nebnext | bulk | unknown | unknown | Taiwan | 2021-12-23 | Adult | Adult | Undetermined | Undetermined | ||||||||||||||||||||||||
| 17 | 17 | DRR334974 | DRX323970 | DRS217310 | DRP008001 | PRJDB12578 | Allometric scaling of RNA abundance from genes to communities | DRP008001 | Other | The metabolic theory of ecology MTE and growth rate hypothesis GRH help explain the mechanistic basis of size allometry and temperature dependence on growth rate and whole body RNA content in organisms. However testing RNA allometric scaling with next generation sequencing is yet to be done. Here we validated the assumptions of GRH and MTE on messenger RNA and ribosome abundance using mock community metatranscriptome analysis. Our findings highlight that fast growing smaller species harbor greater RNA abundance per mass of tissue compared with species having larger body sizes and slower growth rates. We found that genome size and body size impose significant constraints in interspecific RNA abundance scaling while the assumed temperature dependence appeared to be weak. Lastly allometric scaling integration in community level models may extend the use of metatranscriptomics as a reliable tool for estimating ecosystem processes. | totalRNA metatranscriptomic sequences from mock communities consist of five model species | rRNA mock community at 19 degrees rep 3 | SAMD00422594 | sample name:rRNA mock community 19 degrees rep 3|biological replicate:2|collection date:2021 01 15|dev stage:Adult|technical replicate:3|temp:19|treatment:rRNA | NextSeq 2000 sequencing of SAMD00422594 | DRX323970 | t19 3 tRNA.fastq | 1 | NEBNext Kit for Illumina | RNA-Seq | METATRANSCRIPTOMIC | cDNA | SINGLE | ILLUMINA | NextSeq 2000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>101</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP008001 | NextSeq 2000 sequencing of SAMD00422594 | 2856186273.0 | 28400524.0 | DRR334974 | 0:100.57 1:0 | A:695685787;C:733754277;G:715270279;T:711475544;N:386 | 100 | 0 | 695685787 | 733754277 | 715270279 | 711475544 | 386 | DRX323970 | DRS217310 | DRA013226 | SINICA|Machida Laboratory Biodiversity Research Center, Academia Sinica | SINICA|Machida Laboratory Biodiversity Research Center, Academia Sinica | 1 | 0.48152 | 0.10933 | 0.87105 | 0.7287 | 101 | B | usable mapping rate | illumina | nextseq_v2 | unknown | random_priming | nebnext | bulk | unknown | unknown | Taiwan | 2021-12-23 | Adult | Adult | Undetermined | Undetermined | ||||||||||||||||||||||||
| 18 | 18 | DRR334973 | DRX323969 | DRS217309 | DRP008001 | PRJDB12578 | Allometric scaling of RNA abundance from genes to communities | DRP008001 | Other | The metabolic theory of ecology MTE and growth rate hypothesis GRH help explain the mechanistic basis of size allometry and temperature dependence on growth rate and whole body RNA content in organisms. However testing RNA allometric scaling with next generation sequencing is yet to be done. Here we validated the assumptions of GRH and MTE on messenger RNA and ribosome abundance using mock community metatranscriptome analysis. Our findings highlight that fast growing smaller species harbor greater RNA abundance per mass of tissue compared with species having larger body sizes and slower growth rates. We found that genome size and body size impose significant constraints in interspecific RNA abundance scaling while the assumed temperature dependence appeared to be weak. Lastly allometric scaling integration in community level models may extend the use of metatranscriptomics as a reliable tool for estimating ecosystem processes. | totalRNA metatranscriptomic sequences from mock communities consist of five model species | rRNA mock community at 19 degrees rep 2 | SAMD00422593 | sample name:rRNA mock community 19 degrees rep 2|biological replicate:2|collection date:2021 01 15|dev stage:Adult|technical replicate:2|temp:19|treatment:rRNA | NextSeq 2000 sequencing of SAMD00422593 | DRX323969 | t19 2 tRNA.fastq | 1 | NEBNext Kit for Illumina | RNA-Seq | METATRANSCRIPTOMIC | cDNA | SINGLE | ILLUMINA | NextSeq 2000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>101</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP008001 | NextSeq 2000 sequencing of SAMD00422593 | 3199929804.0 | 31816971.0 | DRR334973 | 0:100.57 1:0 | A:777149590;C:825478743;G:804835148;T:792466124;N:199 | 100 | 0 | 777149590 | 825478743 | 804835148 | 792466124 | 199 | DRX323969 | DRS217309 | DRA013226 | SINICA|Machida Laboratory Biodiversity Research Center, Academia Sinica | SINICA|Machida Laboratory Biodiversity Research Center, Academia Sinica | 1 | 0.4418 | 0.10282 | 0.89706 | 0.74667 | 101 | B | usable mapping rate | illumina | nextseq_v2 | unknown | random_priming | nebnext | bulk | unknown | unknown | Taiwan | 2021-12-23 | Adult | Adult | Undetermined | Undetermined | ||||||||||||||||||||||||
| 19 | 19 | DRR334972 | DRX323968 | DRS217308 | DRP008001 | PRJDB12578 | Allometric scaling of RNA abundance from genes to communities | DRP008001 | Other | The metabolic theory of ecology MTE and growth rate hypothesis GRH help explain the mechanistic basis of size allometry and temperature dependence on growth rate and whole body RNA content in organisms. However testing RNA allometric scaling with next generation sequencing is yet to be done. Here we validated the assumptions of GRH and MTE on messenger RNA and ribosome abundance using mock community metatranscriptome analysis. Our findings highlight that fast growing smaller species harbor greater RNA abundance per mass of tissue compared with species having larger body sizes and slower growth rates. We found that genome size and body size impose significant constraints in interspecific RNA abundance scaling while the assumed temperature dependence appeared to be weak. Lastly allometric scaling integration in community level models may extend the use of metatranscriptomics as a reliable tool for estimating ecosystem processes. | totalRNA metatranscriptomic sequences from mock communities consist of five model species | rRNA mock community at 19 degrees rep 1 | SAMD00422592 | sample name:rRNA mock community 19 degrees rep 1|biological replicate:2|collection date:2021 01 15|dev stage:Adult|technical replicate:1|temp:19|treatment:rRNA | NextSeq 2000 sequencing of SAMD00422592 | DRX323968 | t19 1 tRNA.fastq | 1 | NEBNext Kit for Illumina | RNA-Seq | METATRANSCRIPTOMIC | cDNA | SINGLE | ILLUMINA | NextSeq 2000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>101</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP008001 | NextSeq 2000 sequencing of SAMD00422592 | 3658675391.0 | 36374718.0 | DRR334972 | 0:100.58 1:0 | A:879342063;C:954687406;G:929537615;T:895107890;N:417 | 100 | 0 | 879342063 | 954687406 | 929537615 | 895107890 | 417 | DRX323968 | DRS217308 | DRA013226 | SINICA|Machida Laboratory Biodiversity Research Center, Academia Sinica | SINICA|Machida Laboratory Biodiversity Research Center, Academia Sinica | 1 | 0.49439 | 0.11691 | 0.88239 | 0.73925 | 101 | B | usable mapping rate | illumina | nextseq_v2 | unknown | random_priming | nebnext | bulk | unknown | unknown | Taiwan | 2021-12-23 | Adult | Adult | Undetermined | Undetermined | ||||||||||||||||||||||||
| 20 | 20 | DRR334971 | DRX323967 | DRS217307 | DRP008001 | PRJDB12578 | Allometric scaling of RNA abundance from genes to communities | DRP008001 | Other | The metabolic theory of ecology MTE and growth rate hypothesis GRH help explain the mechanistic basis of size allometry and temperature dependence on growth rate and whole body RNA content in organisms. However testing RNA allometric scaling with next generation sequencing is yet to be done. Here we validated the assumptions of GRH and MTE on messenger RNA and ribosome abundance using mock community metatranscriptome analysis. Our findings highlight that fast growing smaller species harbor greater RNA abundance per mass of tissue compared with species having larger body sizes and slower growth rates. We found that genome size and body size impose significant constraints in interspecific RNA abundance scaling while the assumed temperature dependence appeared to be weak. Lastly allometric scaling integration in community level models may extend the use of metatranscriptomics as a reliable tool for estimating ecosystem processes. | totalRNA metatranscriptomic sequences from mock communities consist of five model species | rRNA mock community at 10 degrees rep 3 | SAMD00422591 | sample name:rRNA mock community 10 degrees rep 3|biological replicate:1|collection date:2021 01 15|dev stage:Adult|technical replicate:3|temp:10|treatment:rRNA | NextSeq 2000 sequencing of SAMD00422591 | DRX323967 | t10 3 tRNA.fastq | 1 | NEBNext Kit for Illumina | RNA-Seq | METATRANSCRIPTOMIC | cDNA | SINGLE | ILLUMINA | NextSeq 2000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>101</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP008001 | NextSeq 2000 sequencing of SAMD00422591 | 3017524690.0 | 30006334.0 | DRR334971 | 0:100.56 1:0 | A:771967717;C:738814269;G:712866126;T:793876235;N:343 | 100 | 0 | 771967717 | 738814269 | 712866126 | 793876235 | 343 | DRX323967 | DRS217307 | DRA013226 | SINICA|Machida Laboratory Biodiversity Research Center, Academia Sinica | SINICA|Machida Laboratory Biodiversity Research Center, Academia Sinica | 1 | 0.33157 | 0.07363 | 0.9093 | 0.73422 | 100 | B | usable mapping rate | illumina | nextseq_v2 | unknown | random_priming | nebnext | bulk | unknown | unknown | Taiwan | 2021-12-23 | Adult | Adult | Undetermined | Undetermined | ||||||||||||||||||||||||
| 21 | 21 | DRR334970 | DRX323966 | DRS217306 | DRP008001 | PRJDB12578 | Allometric scaling of RNA abundance from genes to communities | DRP008001 | Other | The metabolic theory of ecology MTE and growth rate hypothesis GRH help explain the mechanistic basis of size allometry and temperature dependence on growth rate and whole body RNA content in organisms. However testing RNA allometric scaling with next generation sequencing is yet to be done. Here we validated the assumptions of GRH and MTE on messenger RNA and ribosome abundance using mock community metatranscriptome analysis. Our findings highlight that fast growing smaller species harbor greater RNA abundance per mass of tissue compared with species having larger body sizes and slower growth rates. We found that genome size and body size impose significant constraints in interspecific RNA abundance scaling while the assumed temperature dependence appeared to be weak. Lastly allometric scaling integration in community level models may extend the use of metatranscriptomics as a reliable tool for estimating ecosystem processes. | totalRNA metatranscriptomic sequences from mock communities consist of five model species | rRNA mock community at 10 degrees rep 2 | SAMD00422590 | sample name:rRNA mock community 10 degrees rep 2|biological replicate:1|collection date:2021 01 15|dev stage:Adult|technical replicate:2|temp:10|treatment:rRNA | NextSeq 2000 sequencing of SAMD00422590 | DRX323966 | t10 2 tRNA.fastq | 1 | NEBNext Kit for Illumina | RNA-Seq | METATRANSCRIPTOMIC | cDNA | SINGLE | ILLUMINA | NextSeq 2000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>101</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP008001 | NextSeq 2000 sequencing of SAMD00422590 | 3115915184.0 | 30982336.0 | DRR334970 | 0:100.57 1:0 | A:765727966;C:794741415;G:771082024;T:784363609;N:170 | 100 | 0 | 765727966 | 794741415 | 771082024 | 784363609 | 170 | DRX323966 | DRS217306 | DRA013226 | SINICA|Machida Laboratory Biodiversity Research Center, Academia Sinica | SINICA|Machida Laboratory Biodiversity Research Center, Academia Sinica | 1 | 0.45458 | 0.10504 | 0.89357 | 0.749 | 100 | B | usable mapping rate | illumina | nextseq_v2 | unknown | random_priming | nebnext | bulk | unknown | unknown | Taiwan | 2021-12-23 | Adult | Adult | Undetermined | Undetermined | ||||||||||||||||||||||||
| 22 | 22 | DRR334969 | DRX323965 | DRS217305 | DRP008001 | PRJDB12578 | Allometric scaling of RNA abundance from genes to communities | DRP008001 | Other | The metabolic theory of ecology MTE and growth rate hypothesis GRH help explain the mechanistic basis of size allometry and temperature dependence on growth rate and whole body RNA content in organisms. However testing RNA allometric scaling with next generation sequencing is yet to be done. Here we validated the assumptions of GRH and MTE on messenger RNA and ribosome abundance using mock community metatranscriptome analysis. Our findings highlight that fast growing smaller species harbor greater RNA abundance per mass of tissue compared with species having larger body sizes and slower growth rates. We found that genome size and body size impose significant constraints in interspecific RNA abundance scaling while the assumed temperature dependence appeared to be weak. Lastly allometric scaling integration in community level models may extend the use of metatranscriptomics as a reliable tool for estimating ecosystem processes. | totalRNA metatranscriptomic sequences from mock communities consist of five model species | rRNA mock community at 10 degrees rep 1 | SAMD00422589 | sample name:rRNA mock community 10 degrees rep 1|biological replicate:1|collection date:2021 01 15|dev stage:Adult|technical replicate:1|temp:10|treatment:rRNA | NextSeq 2000 sequencing of SAMD00422589 | DRX323965 | t10 1 tRNA.fastq | 1 | NEBNext Kit for Illumina | RNA-Seq | METATRANSCRIPTOMIC | cDNA | SINGLE | ILLUMINA | NextSeq 2000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>101</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP008001 | NextSeq 2000 sequencing of SAMD00422589 | 3206657309.0 | 31883532.0 | DRR334969 | 0:100.57 1:0 | A:792874386;C:814578518;G:787469614;T:811734581;N:210 | 100 | 0 | 792874386 | 814578518 | 787469614 | 811734581 | 210 | DRX323965 | DRS217305 | DRA013226 | SINICA|Machida Laboratory Biodiversity Research Center, Academia Sinica | SINICA|Machida Laboratory Biodiversity Research Center, Academia Sinica | 1 | 0.40156 | 0.09664 | 0.92898 | 0.74114 | 101 | B | usable mapping rate | illumina | nextseq_v2 | unknown | random_priming | nebnext | bulk | unknown | unknown | Taiwan | 2021-12-23 | Adult | Adult | Undetermined | Undetermined | ||||||||||||||||||||||||
| 21547 | 21547 | ERR1374860 | ERX1445986 | ERS1036031 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281340 | SAMEA3728882 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728882|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:28Z|INSDC status:public|Submitter Id:63f8d9b0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TTTTCCAGCGT is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:63f8d9b0 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#384 | 15545073 | Illumina sequencing of library 15545073 constructed from sample accession ERS1036031 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TTTTCCAGCGT. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#384.cram | cram | 284058.0 | 2202.0 | SC RUN 18668 1#384 | 0:54 1:75 | A:76261;C:66156;G:64128;T:77513;N:0 | 54 | 75 | 76261 | 66156 | 64128 | 77513 | 0 | ERX1445986 | ERS1036031 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.0 | 0.0007 | 0.0 | 0.00069 | 1.0 | 1.0 | 54 | 75 | T | T | mates < 9% mapping rate | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | ||||||||||||||||||
| 21548 | 21548 | ERR1374859 | ERX1445985 | ERS1036030 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281339 | SAMEA3728881 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728881|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:28Z|INSDC status:public|Submitter Id:63ef8ae0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TTTGATTCTCG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:63ef8ae0 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#383 | 15545072 | Illumina sequencing of library 15545072 constructed from sample accession ERS1036030 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TTTGATTCTCG. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#383.cram | cram | 1304835.0 | 10115.0 | SC RUN 18668 1#383 | 0:54 1:75 | A:352669;C:266861;G:245412;T:439893;N:0 | 54 | 75 | 352669 | 266861 | 245412 | 439893 | 0 | ERX1445985 | ERS1036030 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.31511 | 0.42794 | 0.3151 | 0.42793 | 1.0 | 1.0 | 54 | 75 | T | B | mate1 technical by mapping diff | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | ||||||||||||||||||
| 21549 | 21549 | ERR1374858 | ERX1445984 | ERS1036029 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281338 | SAMEA3728880 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728880|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:27Z|INSDC status:public|Submitter Id:63e21d60 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TTTCGTGTAGA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:63e21d60 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#382 | 15545071 | Illumina sequencing of library 15545071 constructed from sample accession ERS1036029 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TTTCGTGTAGA. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#382.cram | cram | 1003104.0 | 7776.0 | SC RUN 18668 1#382 | 0:54 1:75 | A:275526;C:213901;G:190809;T:322868;N:0 | 54 | 75 | 275526 | 213901 | 190809 | 322868 | 0 | ERX1445984 | ERS1036029 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.17365 | 0.18304 | 0.17364 | 0.18074 | 1.0 | 0.99995 | 0.0 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | |||||||||||||||||
| 21550 | 21550 | ERR1374857 | ERX1445983 | ERS1036028 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281337 | SAMEA3728879 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728879|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:04Z|INSDC last update:2016 01 19T16:49:27Z|INSDC status:public|Submitter Id:63d8ce90 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TTTATTAGACG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:63d8ce90 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#381 | 15545070 | Illumina sequencing of library 15545070 constructed from sample accession ERS1036028 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TTTATTAGACG. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#381.cram | cram | 553023.0 | 4287.0 | SC RUN 18668 1#381 | 0:54 1:75 | A:147453;C:125606;G:113473;T:166491;N:0 | 54 | 75 | 147453 | 125606 | 113473 | 166491 | 0 | ERX1445983 | ERS1036028 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.07054 | 0.14591 | 0.07053 | 0.1459 | 1.0 | 1.0 | 54 | 75 | B | B | mate1-mate2 similar by mapping diff | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | ||||||||||||||||||
| 21551 | 21551 | ERR1374856 | ERX1445982 | ERS1036027 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281336 | SAMEA3728878 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728878|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:27Z|INSDC status:public|Submitter Id:63cfa6d0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TTTAGCTCGGT is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:63cfa6d0 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#380 | 15545069 | Illumina sequencing of library 15545069 constructed from sample accession ERS1036027 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TTTAGCTCGGT. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#380.cram | cram | 1052640.0 | 8160.0 | SC RUN 18668 1#380 | 0:54 1:75 | A:272334;C:229709;G:203715;T:346882;N:0 | 54 | 75 | 272334 | 229709 | 203715 | 346882 | 0 | ERX1445982 | ERS1036027 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.31077 | 0.37992 | 0.31076 | 0.37991 | 1.0 | 1.0 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | ||||||||||||||||||
| 21552 | 21552 | ERR1374855 | ERX1445981 | ERS1036026 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281335 | SAMEA3728877 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728877|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:26Z|INSDC status:public|Submitter Id:63c630f0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TTGCGATGTCC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:63c630f0 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#379 | 15545068 | Illumina sequencing of library 15545068 constructed from sample accession ERS1036026 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TTGCGATGTCC. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#379.cram | cram | 1640622.0 | 12718.0 | SC RUN 18668 1#379 | 0:54 1:75 | A:431283;C:344682;G:321969;T:542688;N:0 | 54 | 75 | 431283 | 344682 | 321969 | 542688 | 0 | ERX1445981 | ERS1036026 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.29581 | 0.39023 | 0.2958 | 0.39022 | 1.0 | 1.0 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | ||||||||||||||||||
| 21553 | 21553 | ERR1374854 | ERX1445980 | ERS1036025 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281334 | SAMEA3728876 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728876|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:26Z|INSDC status:public|Submitter Id:63bd0930 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TTGCACTTAAT is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:63bd0930 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#378 | 15545067 | Illumina sequencing of library 15545067 constructed from sample accession ERS1036025 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TTGCACTTAAT. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#378.cram | cram | 906999.0 | 7031.0 | SC RUN 18668 1#378 | 0:54 1:75 | A:245673;C:184416;G:171222;T:305688;N:0 | 54 | 75 | 245673 | 184416 | 171222 | 305688 | 0 | ERX1445980 | ERS1036025 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.24186 | 0.3482 | 0.24185 | 0.34819 | 1.0 | 1.0 | 54 | 75 | B | B | mate1-mate2 similar by mapping diff | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | ||||||||||||||||||
| 21554 | 21554 | ERR1374853 | ERX1445979 | ERS1036024 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281333 | SAMEA3728875 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728875|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:25Z|INSDC status:public|Submitter Id:63b3ba60 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TTCTGGGAGAG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:63b3ba60 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#377 | 15545066 | Illumina sequencing of library 15545066 constructed from sample accession ERS1036024 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TTCTGGGAGAG. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#377.cram | cram | 390612.0 | 3028.0 | SC RUN 18668 1#377 | 0:54 1:75 | A:98977;C:98046;G:87213;T:106376;N:0 | 54 | 75 | 98977 | 98046 | 87213 | 106376 | 0 | ERX1445979 | ERS1036024 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.00038 | 0.00048 | 0.00037 | 0.00047 | 1.0 | 1.0 | 54 | 75 | T | T | mates < 9% mapping rate | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | ||||||||||||||||||
| 21555 | 21555 | ERR1374852 | ERX1445978 | ERS1036023 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281332 | SAMEA3728874 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728874|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:04Z|INSDC last update:2016 01 19T16:49:25Z|INSDC status:public|Submitter Id:63aa4480 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TTCTGATTTTG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:63aa4480 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#376 | 15545065 | Illumina sequencing of library 15545065 constructed from sample accession ERS1036023 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TTCTGATTTTG. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#376.cram | cram | 1790907.0 | 13883.0 | SC RUN 18668 1#376 | 0:54 1:75 | A:508300;C:371765;G:340642;T:570200;N:0 | 54 | 75 | 508300 | 371765 | 340642 | 570200 | 0 | ERX1445978 | ERS1036023 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.22446 | 0.28647 | 0.22445 | 0.28626 | 1.0 | 0.99997 | 0.0 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | |||||||||||||||||
| 21556 | 21556 | ERR1374851 | ERX1445977 | ERS1036022 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281331 | SAMEA3728873 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728873|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:24Z|INSDC status:public|Submitter Id:63a11cc0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TTCGTGCTTTC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:63a11cc0 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#375 | 15545064 | Illumina sequencing of library 15545064 constructed from sample accession ERS1036022 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TTCGTGCTTTC. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#375.cram | cram | 1313349.0 | 10181.0 | SC RUN 18668 1#375 | 0:54 1:75 | A:354351;C:262296;G:244012;T:452690;N:0 | 54 | 75 | 354351 | 262296 | 244012 | 452690 | 0 | ERX1445977 | ERS1036022 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.37529 | 0.46316 | 0.37528 | 0.45581 | 1.0 | 0.99993 | 0.01754 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | |||||||||||||||||
| 21557 | 21557 | ERR1374850 | ERX1445976 | ERS1036021 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281330 | SAMEA3728872 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728872|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:24Z|INSDC status:public|Submitter Id:6397cdf0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TTCGGCCCAAT is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:6397cdf0 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#374 | 15545063 | Illumina sequencing of library 15545063 constructed from sample accession ERS1036021 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TTCGGCCCAAT. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#374.cram | cram | 9495561.0 | 73609.0 | SC RUN 18668 1#374 | 0:54 1:75 | A:2538234;C:2126986;G:1889072;T:2941269;N:0 | 54 | 75 | 2538234 | 2126986 | 1889072 | 2941269 | 0 | ERX1445976 | ERS1036021 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.12462 | 0.15044 | 0.12459 | 0.15041 | 0.99997 | 0.99997 | 1.0 | 0.0 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | ||||||||||||||||
| 21558 | 21558 | ERR1374849 | ERX1445975 | ERS1036020 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281329 | SAMEA3728871 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728871|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:23Z|INSDC status:public|Submitter Id:638e5810 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TTCCCGTTTAA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:638e5810 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#373 | 15545062 | Illumina sequencing of library 15545062 constructed from sample accession ERS1036020 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TTCCCGTTTAA. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#373.cram | cram | 1347663.0 | 10447.0 | SC RUN 18668 1#373 | 0:54 1:75 | A:364080;C:281280;G:262702;T:439601;N:0 | 54 | 75 | 364080 | 281280 | 262702 | 439601 | 0 | ERX1445975 | ERS1036020 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.29672 | 0.29248 | 0.2966 | 0.29223 | 0.99997 | 0.99997 | 0.0 | 0.0 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | ||||||||||||||||
| 21559 | 21559 | ERR1374848 | ERX1445974 | ERS1036019 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281328 | SAMEA3728870 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728870|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:23Z|INSDC status:public|Submitter Id:63846d00 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TTCATCCAATA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:63846d00 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#372 | 15545061 | Illumina sequencing of library 15545061 constructed from sample accession ERS1036019 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TTCATCCAATA. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#372.cram | cram | 1457442.0 | 11298.0 | SC RUN 18668 1#372 | 0:54 1:75 | A:392913;C:312562;G:282308;T:469659;N:0 | 54 | 75 | 392913 | 312562 | 282308 | 469659 | 0 | ERX1445974 | ERS1036019 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.16521 | 0.1733 | 0.1652 | 0.17329 | 1.0 | 1.0 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | ||||||||||||||||||
| 21560 | 21560 | ERR1374847 | ERX1445973 | ERS1036018 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281327 | SAMEA3728869 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728869|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:22Z|INSDC status:public|Submitter Id:6379e5b0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TTATCGTCAAG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:6379e5b0 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#371 | 15545060 | Illumina sequencing of library 15545060 constructed from sample accession ERS1036018 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TTATCGTCAAG. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#371.cram | cram | 528900.0 | 4100.0 | SC RUN 18668 1#371 | 0:54 1:75 | A:135092;C:121387;G:114485;T:157936;N:0 | 54 | 75 | 135092 | 121387 | 114485 | 157936 | 0 | ERX1445973 | ERS1036018 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | |||||||||||||||||||||||||||
| 21561 | 21561 | ERR1374846 | ERX1445972 | ERS1036017 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281326 | SAMEA3728868 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728868|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:22Z|INSDC status:public|Submitter Id:63706fd0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TTAAGGAAGTA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:63706fd0 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#370 | 15545059 | Illumina sequencing of library 15545059 constructed from sample accession ERS1036017 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TTAAGGAAGTA. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#370.cram | cram | 891648.0 | 6912.0 | SC RUN 18668 1#370 | 0:54 1:75 | A:224658;C:209577;G:190876;T:266537;N:0 | 54 | 75 | 224658 | 209577 | 190876 | 266537 | 0 | ERX1445972 | ERS1036017 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.06502 | 0.08158 | 0.06501 | 0.06692 | 1.0 | 0.99995 | 1.0 | 54 | 75 | T | T | mates < 9% mapping rate | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | |||||||||||||||||
| 21562 | 21562 | ERR1374845 | ERX1445971 | ERS1036016 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281325 | SAMEA3728867 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728867|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:21Z|INSDC status:public|Submitter Id:63672100 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TTAACAAGTAT is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:63672100 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#369 | 15545058 | Illumina sequencing of library 15545058 constructed from sample accession ERS1036016 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TTAACAAGTAT. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#369.cram | cram | 1606695.0 | 12455.0 | SC RUN 18668 1#369 | 0:54 1:75 | A:422391;C:343604;G:312477;T:528223;N:0 | 54 | 75 | 422391 | 343604 | 312477 | 528223 | 0 | ERX1445971 | ERS1036016 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.16991 | 0.23867 | 0.1699 | 0.23866 | 1.0 | 1.0 | 54 | 75 | B | B | mate1-mate2 similar by mapping diff | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | ||||||||||||||||||
| 21563 | 21563 | ERR1374844 | ERX1445970 | ERS1036015 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281324 | SAMEA3728866 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728866|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:04Z|INSDC last update:2016 01 19T16:49:21Z|INSDC status:public|Submitter Id:635dd230 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TGTTGAACTCC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:635dd230 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#368 | 15545057 | Illumina sequencing of library 15545057 constructed from sample accession ERS1036015 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TGTTGAACTCC. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#368.cram | cram | 1928292.0 | 14948.0 | SC RUN 18668 1#368 | 0:54 1:75 | A:521180;C:393086;G:370859;T:643167;N:0 | 54 | 75 | 521180 | 393086 | 370859 | 643167 | 0 | ERX1445970 | ERS1036015 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.27112 | 0.35395 | 0.27111 | 0.35331 | 1.0 | 0.99997 | 0.0 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | |||||||||||||||||
| 21564 | 21564 | ERR1374843 | ERX1445969 | ERS1036014 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281323 | SAMEA3728865 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728865|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:20Z|INSDC status:public|Submitter Id:63548360 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TGTTACCCGTA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:63548360 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#367 | 15545056 | Illumina sequencing of library 15545056 constructed from sample accession ERS1036014 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TGTTACCCGTA. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#367.cram | cram | 1013940.0 | 7860.0 | SC RUN 18668 1#367 | 0:54 1:75 | A:271289;C:212352;G:203745;T:326554;N:0 | 54 | 75 | 271289 | 212352 | 203745 | 326554 | 0 | ERX1445969 | ERS1036014 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.24792 | 0.25875 | 0.24791 | 0.25841 | 1.0 | 0.99997 | 0.0 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | |||||||||||||||||
| 21565 | 21565 | ERR1374842 | ERX1445968 | ERS1036013 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281322 | SAMEA3728864 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728864|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:04Z|INSDC last update:2016 01 19T16:49:20Z|INSDC status:public|Submitter Id:634b3490 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TGTGCATAGTT is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:634b3490 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#366 | 15545055 | Illumina sequencing of library 15545055 constructed from sample accession ERS1036013 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TGTGCATAGTT. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#366.cram | cram | 1844313.0 | 14297.0 | SC RUN 18668 1#366 | 0:54 1:75 | A:496299;C:374567;G:338084;T:635363;N:0 | 54 | 75 | 496299 | 374567 | 338084 | 635363 | 0 | ERX1445968 | ERS1036013 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.35247 | 0.39799 | 0.35246 | 0.39665 | 1.0 | 0.99993 | 0.06666 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | |||||||||||||||||
| 21566 | 21566 | ERR1374841 | ERX1445967 | ERS1036012 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281321 | SAMEA3728863 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728863|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:04Z|INSDC last update:2016 01 19T16:49:19Z|INSDC status:public|Submitter Id:6341e5c0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TGTCTATTCAC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:6341e5c0 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#365 | 15545054 | Illumina sequencing of library 15545054 constructed from sample accession ERS1036012 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TGTCTATTCAC. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#365.cram | cram | 1835283.0 | 14227.0 | SC RUN 18668 1#365 | 0:54 1:75 | A:493273;C:380459;G:370077;T:591474;N:0 | 54 | 75 | 493273 | 380459 | 370077 | 591474 | 0 | ERX1445967 | ERS1036012 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.23628 | 0.28935 | 0.23627 | 0.27695 | 1.0 | 0.99995 | 0.93181 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | |||||||||||||||||
| 21567 | 21567 | ERR1374840 | ERX1445966 | ERS1036011 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281320 | SAMEA3728862 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728862|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:19Z|INSDC status:public|Submitter Id:633896f0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TGTAGCTTACC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:633896f0 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#364 | 15545053 | Illumina sequencing of library 15545053 constructed from sample accession ERS1036011 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TGTAGCTTACC. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#364.cram | cram | 1688223.0 | 13087.0 | SC RUN 18668 1#364 | 0:54 1:75 | A:450385;C:348993;G:330742;T:558103;N:0 | 54 | 75 | 450385 | 348993 | 330742 | 558103 | 0 | ERX1445966 | ERS1036011 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.28027 | 0.3579 | 0.28026 | 0.34887 | 1.0 | 0.99997 | 1.0 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | |||||||||||||||||
| 21568 | 21568 | ERR1374839 | ERX1445965 | ERS1036010 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281319 | SAMEA3728861 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728861|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:19Z|INSDC status:public|Submitter Id:632f4820 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TGTAAGAATCA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:632f4820 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#363 | 15545052 | Illumina sequencing of library 15545052 constructed from sample accession ERS1036010 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TGTAAGAATCA. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#363.cram | cram | 4013319.0 | 31111.0 | SC RUN 18668 1#363 | 0:54 1:75 | A:1047562;C:843784;G:749096;T:1372877;N:0 | 54 | 75 | 1047562 | 843784 | 749096 | 1372877 | 0 | ERX1445965 | ERS1036010 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.26474 | 0.30978 | 0.26473 | 0.30683 | 1.0 | 0.99997 | 0.0 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | |||||||||||||||||
| 21569 | 21569 | ERR1374838 | ERX1445964 | ERS1036009 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281318 | SAMEA3728860 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728860|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:04Z|INSDC last update:2016 01 19T16:49:18Z|INSDC status:public|Submitter Id:6325f950 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TGGTTGTGGCC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:6325f950 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#362 | 15545051 | Illumina sequencing of library 15545051 constructed from sample accession ERS1036009 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TGGTTGTGGCC. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#362.cram | cram | 8268255.0 | 64095.0 | SC RUN 18668 1#362 | 0:54 1:75 | A:2174138;C:1756790;G:1553021;T:2784306;N:0 | 54 | 75 | 2174138 | 1756790 | 1553021 | 2784306 | 0 | ERX1445964 | ERS1036009 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.33246 | 0.46406 | 0.33243 | 0.46312 | 0.99997 | 0.99981 | 0.0 | 0.27906 | 54 | 75 | T | B | mate1 technical by mapping diff | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | ||||||||||||||||
| 21570 | 21570 | ERR1374837 | ERX1445963 | ERS1036008 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281317 | SAMEA3728859 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728859|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:18Z|INSDC status:public|Submitter Id:631caa80 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TGGGTATCAGG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:631caa80 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#361 | 15545050 | Illumina sequencing of library 15545050 constructed from sample accession ERS1036008 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TGGGTATCAGG. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#361.cram | cram | 1545807.0 | 11983.0 | SC RUN 18668 1#361 | 0:54 1:75 | A:388157;C:353499;G:299492;T:504659;N:0 | 54 | 75 | 388157 | 353499 | 299492 | 504659 | 0 | ERX1445963 | ERS1036008 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.32705 | 0.36263 | 0.32704 | 0.36251 | 1.0 | 0.99997 | 1.0 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | |||||||||||||||||
| 21571 | 21571 | ERR1374836 | ERX1445962 | ERS1036007 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281316 | SAMEA3728858 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728858|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:17Z|INSDC status:public|Submitter Id:63122330 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TGGGCCTTTAG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:63122330 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#360 | 15545049 | Illumina sequencing of library 15545049 constructed from sample accession ERS1036007 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TGGGCCTTTAG. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#360.cram | cram | 796962.0 | 6178.0 | SC RUN 18668 1#360 | 0:54 1:75 | A:205421;C:183412;G:167684;T:240445;N:0 | 54 | 75 | 205421 | 183412 | 167684 | 240445 | 0 | ERX1445962 | ERS1036007 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.16008 | 0.21906 | 0.16007 | 0.21905 | 1.0 | 1.0 | 54 | 75 | B | B | mate1-mate2 similar by mapping diff | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | ||||||||||||||||||
| 21572 | 21572 | ERR1374835 | ERX1445961 | ERS1036006 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281315 | SAMEA3728857 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728857|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:17Z|INSDC status:public|Submitter Id:6308d460 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TGGCAAGTTCG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:6308d460 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#359 | 15545048 | Illumina sequencing of library 15545048 constructed from sample accession ERS1036006 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TGGCAAGTTCG. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#359.cram | cram | 1457700.0 | 11300.0 | SC RUN 18668 1#359 | 0:54 1:75 | A:381691;C:306041;G:273166;T:496802;N:0 | 54 | 75 | 381691 | 306041 | 273166 | 496802 | 0 | ERX1445961 | ERS1036006 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.35568 | 0.40861 | 0.35567 | 0.40802 | 1.0 | 0.99995 | 0.0 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | |||||||||||||||||
| 21573 | 21573 | ERR1374834 | ERX1445960 | ERS1036005 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281314 | SAMEA3728856 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728856|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:16Z|INSDC status:public|Submitter Id:62ff8590 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TGCGCTCGGAT is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:62ff8590 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#358 | 15545047 | Illumina sequencing of library 15545047 constructed from sample accession ERS1036005 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TGCGCTCGGAT. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#358.cram | cram | 1580766.0 | 12254.0 | SC RUN 18668 1#358 | 0:54 1:75 | A:407154;C:319618;G:294050;T:559944;N:0 | 54 | 75 | 407154 | 319618 | 294050 | 559944 | 0 | ERX1445960 | ERS1036005 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.33503 | 0.48661 | 0.33502 | 0.48649 | 1.0 | 0.99997 | 0.0 | 54 | 75 | T | B | mate1 technical by mapping diff | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | |||||||||||||||||
| 21574 | 21574 | ERR1374833 | ERX1445959 | ERS1036004 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281313 | SAMEA3728855 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728855|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:06Z|INSDC last update:2016 01 19T16:49:15Z|INSDC status:public|Submitter Id:62f60fb0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TGCCCAGCATA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:62f60fb0 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#357 | 15545046 | Illumina sequencing of library 15545046 constructed from sample accession ERS1036004 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TGCCCAGCATA. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#357.cram | cram | 1647717.0 | 12773.0 | SC RUN 18668 1#357 | 0:54 1:75 | A:421018;C:364506;G:348242;T:513951;N:0 | 54 | 75 | 421018 | 364506 | 348242 | 513951 | 0 | ERX1445959 | ERS1036004 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.18264 | 0.21622 | 0.18263 | 0.19406 | 1.0 | 0.99991 | 0.81603 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | |||||||||||||||||
| 21575 | 21575 | ERR1374832 | ERX1445958 | ERS1036003 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281312 | SAMEA3728854 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728854|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:15Z|INSDC status:public|Submitter Id:62ecc0e0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TGATTGATGGA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:62ecc0e0 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#356 | 15545045 | Illumina sequencing of library 15545045 constructed from sample accession ERS1036003 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TGATTGATGGA. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#356.cram | cram | 1476921.0 | 11449.0 | SC RUN 18668 1#356 | 0:54 1:75 | A:388623;C:329404;G:278185;T:480709;N:0 | 54 | 75 | 388623 | 329404 | 278185 | 480709 | 0 | ERX1445958 | ERS1036003 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.28736 | 0.29022 | 0.28735 | 0.28988 | 1.0 | 0.99997 | 0.0 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | |||||||||||||||||
| 21576 | 21576 | ERR1374831 | ERX1445957 | ERS1036002 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281311 | SAMEA3728853 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728853|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:04Z|INSDC last update:2016 01 19T16:49:14Z|INSDC status:public|Submitter Id:62e39920 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TGAGGGCTCGG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:62e39920 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#355 | 15545044 | Illumina sequencing of library 15545044 constructed from sample accession ERS1036002 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TGAGGGCTCGG. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#355.cram | cram | 1297869.0 | 10061.0 | SC RUN 18668 1#355 | 0:54 1:75 | A:321675;C:309187;G:286434;T:380573;N:0 | 54 | 75 | 321675 | 309187 | 286434 | 380573 | 0 | ERX1445957 | ERS1036002 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.17335 | 0.1815 | 0.17334 | 0.18018 | 1.0 | 0.99995 | 0.0 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | |||||||||||||||||
| 21577 | 21577 | ERR1374830 | ERX1445956 | ERS1036001 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281310 | SAMEA3728852 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728852|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:04Z|INSDC last update:2016 01 19T16:49:14Z|INSDC status:public|Submitter Id:62da4a50 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TGACGCGATTT is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:62da4a50 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#354 | 15545043 | Illumina sequencing of library 15545043 constructed from sample accession ERS1036001 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TGACGCGATTT. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#354.cram | cram | 2254404.0 | 17476.0 | SC RUN 18668 1#354 | 0:54 1:75 | A:593689;C:473532;G:416369;T:770814;N:0 | 54 | 75 | 593689 | 473532 | 416369 | 770814 | 0 | ERX1445956 | ERS1036001 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.44622 | 0.486 | 0.44621 | 0.48599 | 1.0 | 1.0 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | ||||||||||||||||||
| 21578 | 21578 | ERR1374829 | ERX1445955 | ERS1036000 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281309 | SAMEA3728851 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728851|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:14Z|INSDC status:public|Submitter Id:62d0d470 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TGACAACGCTG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:62d0d470 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#353 | 15545042 | Illumina sequencing of library 15545042 constructed from sample accession ERS1036000 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TGACAACGCTG. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#353.cram | cram | 2040651.0 | 15819.0 | SC RUN 18668 1#353 | 0:54 1:75 | A:536652;C:412332;G:375717;T:715950;N:0 | 54 | 75 | 536652 | 412332 | 375717 | 715950 | 0 | ERX1445955 | ERS1036000 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.34926 | 0.44657 | 0.34904 | 0.42924 | 0.99997 | 0.99989 | 1.0 | 0.97448 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | ||||||||||||||||
| 21579 | 21579 | ERR1374828 | ERX1445954 | ERS1035999 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281308 | SAMEA3728850 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728850|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:06Z|INSDC last update:2016 01 19T16:49:13Z|INSDC status:public|Submitter Id:62c75e90 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TCTTAATTGAG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:62c75e90 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#352 | 15545041 | Illumina sequencing of library 15545041 constructed from sample accession ERS1035999 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TCTTAATTGAG. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#352.cram | cram | 2707452.0 | 20988.0 | SC RUN 18668 1#352 | 0:54 1:75 | A:718804;C:585757;G:511662;T:891229;N:0 | 54 | 75 | 718804 | 585757 | 511662 | 891229 | 0 | ERX1445954 | ERS1035999 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.26416 | 0.33244 | 0.26415 | 0.32476 | 1.0 | 0.99995 | 0.0 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | |||||||||||||||||
| 21580 | 21580 | ERR1374827 | ERX1445953 | ERS1035998 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281307 | SAMEA3728849 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728849|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:13Z|INSDC status:public|Submitter Id:62be0fc0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TCTTAAAGATT is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:62be0fc0 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#351 | 15545040 | Illumina sequencing of library 15545040 constructed from sample accession ERS1035998 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TCTTAAAGATT. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#351.cram | cram | 3549951.0 | 27519.0 | SC RUN 18668 1#351 | 0:54 1:75 | A:969722;C:703575;G:618005;T:1258649;N:0 | 54 | 75 | 969722 | 703575 | 618005 | 1258649 | 0 | ERX1445953 | ERS1035998 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.24619 | 0.3418 | 0.24606 | 0.34007 | 0.99993 | 0.99995 | 0.66666 | 0.0 | 54 | 75 | B | B | mate1-mate2 similar by mapping diff | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | ||||||||||||||||
| 21581 | 21581 | ERR1374826 | ERX1445952 | ERS1035997 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281306 | SAMEA3728848 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728848|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:12Z|INSDC status:public|Submitter Id:62b4c0f0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TCTGAGTGCCC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:62b4c0f0 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#350 | 15545039 | Illumina sequencing of library 15545039 constructed from sample accession ERS1035997 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TCTGAGTGCCC. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#350.cram | cram | 3638445.0 | 28205.0 | SC RUN 18668 1#350 | 0:54 1:75 | A:941688;C:783894;G:796467;T:1116396;N:0 | 54 | 75 | 941688 | 783894 | 796467 | 1116396 | 0 | ERX1445952 | ERS1035997 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.2456 | 0.29806 | 0.24559 | 0.29801 | 1.0 | 0.99997 | 0.0 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | |||||||||||||||||
| 21582 | 21582 | ERR1374825 | ERX1445951 | ERS1035996 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281305 | SAMEA3728847 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728847|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:04Z|INSDC last update:2016 01 19T16:49:12Z|INSDC status:public|Submitter Id:62ab4b10 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TCTCGTCATAT is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:62ab4b10 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#349 | 15545038 | Illumina sequencing of library 15545038 constructed from sample accession ERS1035996 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TCTCGTCATAT. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#349.cram | cram | 2497182.0 | 19358.0 | SC RUN 18668 1#349 | 0:54 1:75 | A:674017;C:505786;G:488086;T:829293;N:0 | 54 | 75 | 674017 | 505786 | 488086 | 829293 | 0 | ERX1445951 | ERS1035996 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.28176 | 0.34387 | 0.28175 | 0.34273 | 1.0 | 0.99993 | 0.0 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | |||||||||||||||||
| 21583 | 21583 | ERR1374824 | ERX1445950 | ERS1035995 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281304 | SAMEA3728846 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728846|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:04Z|INSDC last update:2016 01 19T16:49:11Z|INSDC status:public|Submitter Id:62a1fc40 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TCTCGGGTGAC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:62a1fc40 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#348 | 15545037 | Illumina sequencing of library 15545037 constructed from sample accession ERS1035995 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TCTCGGGTGAC. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#348.cram | cram | 803928.0 | 6232.0 | SC RUN 18668 1#348 | 0:54 1:75 | A:202262;C:188022;G:170949;T:242695;N:0 | 54 | 75 | 202262 | 188022 | 170949 | 242695 | 0 | ERX1445950 | ERS1035995 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.20466 | 0.22909 | 0.20465 | 0.22908 | 1.0 | 1.0 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | ||||||||||||||||||
| 21584 | 21584 | ERR1374823 | ERX1445949 | ERS1035994 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281303 | SAMEA3728845 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728845|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:11Z|INSDC status:public|Submitter Id:62988660 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TCTCAGAACTG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:62988660 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#347 | 15545036 | Illumina sequencing of library 15545036 constructed from sample accession ERS1035994 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TCTCAGAACTG. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#347.cram | cram | 827019.0 | 6411.0 | SC RUN 18668 1#347 | 0:54 1:75 | A:216088;C:173079;G:160104;T:277748;N:0 | 54 | 75 | 216088 | 173079 | 160104 | 277748 | 0 | ERX1445949 | ERS1035994 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.30412 | 0.30791 | 0.30411 | 0.30748 | 1.0 | 0.99997 | 0.0 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | |||||||||||||||||
| 21585 | 21585 | ERR1374822 | ERX1445948 | ERS1035993 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281302 | SAMEA3728844 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728844|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:04Z|INSDC last update:2016 01 19T16:49:10Z|INSDC status:public|Submitter Id:628d14b0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TCTATCCTCAT is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:628d14b0 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#346 | 15545035 | Illumina sequencing of library 15545035 constructed from sample accession ERS1035993 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TCTATCCTCAT. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#346.cram | cram | 1070958.0 | 8302.0 | SC RUN 18668 1#346 | 0:54 1:75 | A:282497;C:218462;G:212616;T:357383;N:0 | 54 | 75 | 282497 | 218462 | 212616 | 357383 | 0 | ERX1445948 | ERS1035993 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.34006 | 0.38903 | 0.34005 | 0.38902 | 1.0 | 1.0 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | ||||||||||||||||||
| 21586 | 21586 | ERR1374821 | ERX1445947 | ERS1035992 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281301 | SAMEA3728843 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728843|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:04Z|INSDC last update:2016 01 19T16:49:10Z|INSDC status:public|Submitter Id:628154e0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TCGTGTGAATT is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:628154e0 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#345 | 15545034 | Illumina sequencing of library 15545034 constructed from sample accession ERS1035992 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TCGTGTGAATT. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#345.cram | cram | 1072377.0 | 8313.0 | SC RUN 18668 1#345 | 0:54 1:75 | A:285076;C:231408;G:204910;T:350983;N:0 | 54 | 75 | 285076 | 231408 | 204910 | 350983 | 0 | ERX1445947 | ERS1035992 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.18283 | 0.26294 | 0.18282 | 0.26293 | 1.0 | 1.0 | 54 | 75 | B | B | mate1-mate2 similar by mapping diff | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | ||||||||||||||||||
| 21587 | 21587 | ERR1374820 | ERX1445946 | ERS1035991 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281300 | SAMEA3728842 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728842|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:09Z|INSDC status:public|Submitter Id:62780610 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TCGTGTCGGAG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:62780610 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#344 | 15545033 | Illumina sequencing of library 15545033 constructed from sample accession ERS1035991 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TCGTGTCGGAG. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#344.cram | cram | 1061799.0 | 8231.0 | SC RUN 18668 1#344 | 0:54 1:75 | A:267222;C:245833;G:218391;T:330353;N:0 | 54 | 75 | 267222 | 245833 | 218391 | 330353 | 0 | ERX1445946 | ERS1035991 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.1511 | 0.23435 | 0.15109 | 0.23363 | 1.0 | 0.99997 | 0.0 | 54 | 75 | B | B | mate1-mate2 similar by mapping diff | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | |||||||||||||||||
| 21588 | 21588 | ERR1374819 | ERX1445945 | ERS1035990 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281299 | SAMEA3728841 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728841|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:09Z|INSDC status:public|Submitter Id:626eb740 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TCGTCACTGGC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:626eb740 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#343 | 15545032 | Illumina sequencing of library 15545032 constructed from sample accession ERS1035990 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TCGTCACTGGC. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#343.cram | cram | 1646298.0 | 12762.0 | SC RUN 18668 1#343 | 0:54 1:75 | A:430350;C:332673;G:316895;T:566380;N:0 | 54 | 75 | 430350 | 332673 | 316895 | 566380 | 0 | ERX1445945 | ERS1035990 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.3725 | 0.47576 | 0.3724 | 0.47071 | 0.99997 | 0.99993 | 0.0 | 0.0 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | ||||||||||||||||
| 21589 | 21589 | ERR1374818 | ERX1445944 | ERS1035989 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281298 | SAMEA3728840 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728840|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:09Z|INSDC status:public|Submitter Id:62656870 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TCGGCCGGTCA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:62656870 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#342 | 15545031 | Illumina sequencing of library 15545031 constructed from sample accession ERS1035989 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TCGGCCGGTCA. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#342.cram | cram | 1661004.0 | 12876.0 | SC RUN 18668 1#342 | 0:54 1:75 | A:428622;C:353724;G:324244;T:554414;N:0 | 54 | 75 | 428622 | 353724 | 324244 | 554414 | 0 | ERX1445944 | ERS1035989 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.36823 | 0.43249 | 0.36822 | 0.41731 | 1.0 | 0.99991 | 0.86 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | |||||||||||||||||
| 21590 | 21590 | ERR1374817 | ERX1445943 | ERS1035988 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281297 | SAMEA3728839 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728839|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:08Z|INSDC status:public|Submitter Id:625c19a0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TCGGCATGATC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:625c19a0 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#341 | 15545030 | Illumina sequencing of library 15545030 constructed from sample accession ERS1035988 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TCGGCATGATC. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#341.cram | cram | 1188090.0 | 9210.0 | SC RUN 18668 1#341 | 0:54 1:75 | A:307367;C:255866;G:246298;T:378559;N:0 | 54 | 75 | 307367 | 255866 | 246298 | 378559 | 0 | ERX1445943 | ERS1035988 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.19368 | 0.23944 | 0.19367 | 0.23914 | 1.0 | 0.99997 | 0.0 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | |||||||||||||||||
| 21591 | 21591 | ERR1374816 | ERX1445942 | ERS1035987 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281296 | SAMEA3728838 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728838|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:08Z|INSDC status:public|Submitter Id:6252cad0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TCCTCGGGGTC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:6252cad0 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#340 | 15545029 | Illumina sequencing of library 15545029 constructed from sample accession ERS1035987 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TCCTCGGGGTC. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#340.cram | cram | 2499762.0 | 19378.0 | SC RUN 18668 1#340 | 0:54 1:75 | A:675873;C:500350;G:456606;T:866933;N:0 | 54 | 75 | 675873 | 500350 | 456606 | 866933 | 0 | ERX1445942 | ERS1035987 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.31456 | 0.4068 | 0.3142 | 0.39891 | 0.99993 | 0.99991 | 0.83333 | 0.75471 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | ||||||||||||||||
| 21592 | 21592 | ERR1374815 | ERX1445941 | ERS1035986 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281295 | SAMEA3728837 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728837|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:04Z|INSDC last update:2016 01 19T16:49:07Z|INSDC status:public|Submitter Id:62497c00 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TCCATGTGTGT is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:62497c00 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#339 | 15545028 | Illumina sequencing of library 15545028 constructed from sample accession ERS1035986 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TCCATGTGTGT. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#339.cram | cram | 2328192.0 | 18048.0 | SC RUN 18668 1#339 | 0:54 1:75 | A:615062;C:497318;G:456096;T:759716;N:0 | 54 | 75 | 615062 | 497318 | 456096 | 759716 | 0 | ERX1445941 | ERS1035986 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.34263 | 0.37639 | 0.34262 | 0.3756 | 1.0 | 0.99997 | 0.0 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | |||||||||||||||||
| 21593 | 21593 | ERR1374814 | ERX1445940 | ERS1035985 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281294 | SAMEA3728836 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728836|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:04Z|INSDC last update:2016 01 19T16:49:07Z|INSDC status:public|Submitter Id:623fb800 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TCATTGACTTG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:623fb800 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#338 | 15545027 | Illumina sequencing of library 15545027 constructed from sample accession ERS1035985 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TCATTGACTTG. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#338.cram | cram | 2188743.0 | 16967.0 | SC RUN 18668 1#338 | 0:54 1:75 | A:607933;C:410250;G:366012;T:804548;N:0 | 54 | 75 | 607933 | 410250 | 366012 | 804548 | 0 | ERX1445940 | ERS1035985 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.52744 | 0.54641 | 0.52743 | 0.54376 | 1.0 | 0.99991 | 0.0 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | |||||||||||||||||
| 21594 | 21594 | ERR1374813 | ERX1445939 | ERS1035984 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281293 | SAMEA3728835 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728835|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:04Z|INSDC last update:2016 01 19T16:49:06Z|INSDC status:public|Submitter Id:62366930 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TCATGCTCCAT is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:62366930 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#337 | 15545026 | Illumina sequencing of library 15545026 constructed from sample accession ERS1035984 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TCATGCTCCAT. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#337.cram | cram | 2284203.0 | 17707.0 | SC RUN 18668 1#337 | 0:54 1:75 | A:607410;C:461907;G:437333;T:777553;N:0 | 54 | 75 | 607410 | 461907 | 437333 | 777553 | 0 | ERX1445939 | ERS1035984 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.3818 | 0.42953 | 0.38179 | 0.41626 | 1.0 | 0.99993 | 0.97814 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | |||||||||||||||||
| 21595 | 21595 | ERR1374812 | ERX1445938 | ERS1035983 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281292 | SAMEA3728834 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728834|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:06Z|INSDC status:public|Submitter Id:622d1a60 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TCAGTATTTAT is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:622d1a60 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#336 | 15545025 | Illumina sequencing of library 15545025 constructed from sample accession ERS1035983 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TCAGTATTTAT. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#336.cram | cram | 480525.0 | 3725.0 | SC RUN 18668 1#336 | 0:54 1:75 | A:131041;C:100381;G:92592;T:156511;N:0 | 54 | 75 | 131041 | 100381 | 92592 | 156511 | 0 | ERX1445938 | ERS1035983 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.2082 | 0.26632 | 0.20819 | 0.26631 | 1.0 | 1.0 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | ||||||||||||||||||
| 21596 | 21596 | ERR1374811 | ERX1445937 | ERS1035982 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281291 | SAMEA3728833 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728833|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:05Z|INSDC status:public|Submitter Id:6223cb90 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TCACTTCAAGA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:6223cb90 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#335 | 15545024 | Illumina sequencing of library 15545024 constructed from sample accession ERS1035982 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TCACTTCAAGA. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#335.cram | cram | 1010586.0 | 7834.0 | SC RUN 18668 1#335 | 0:54 1:75 | A:260059;C:214294;G:196843;T:339390;N:0 | 54 | 75 | 260059 | 214294 | 196843 | 339390 | 0 | ERX1445937 | ERS1035982 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.30599 | 0.31128 | 0.30598 | 0.31078 | 1.0 | 0.99997 | 0.0 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | |||||||||||||||||
| 21597 | 21597 | ERR1374810 | ERX1445936 | ERS1035981 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281290 | SAMEA3728832 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728832|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:04Z|INSDC last update:2016 01 19T16:49:05Z|INSDC status:public|Submitter Id:621a7cc0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TCACCTGTCGG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:621a7cc0 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#334 | 15545023 | Illumina sequencing of library 15545023 constructed from sample accession ERS1035981 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TCACCTGTCGG. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#334.cram | cram | 722013.0 | 5597.0 | SC RUN 18668 1#334 | 0:54 1:75 | A:192364;C:154253;G:148364;T:227032;N:0 | 54 | 75 | 192364 | 154253 | 148364 | 227032 | 0 | ERX1445936 | ERS1035981 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.20643 | 0.24202 | 0.20622 | 0.24008 | 0.99997 | 0.99995 | 1.0 | 0.0 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | ||||||||||||||||
| 21598 | 21598 | ERR1374809 | ERX1445935 | ERS1035980 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281289 | SAMEA3728831 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728831|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:05Z|INSDC status:public|Submitter Id:621106e0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TCACCGGCTAT is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:621106e0 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#333 | 15545022 | Illumina sequencing of library 15545022 constructed from sample accession ERS1035980 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TCACCGGCTAT. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#333.cram | cram | 1964154.0 | 15226.0 | SC RUN 18668 1#333 | 0:54 1:75 | A:516192;C:401282;G:377422;T:669258;N:0 | 54 | 75 | 516192 | 401282 | 377422 | 669258 | 0 | ERX1445935 | ERS1035980 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.2841 | 0.38168 | 0.28386 | 0.38084 | 0.99997 | 0.99997 | 0.0 | 0.0 | 54 | 75 | B | B | mate1-mate2 similar by mapping diff | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | ||||||||||||||||
| 21599 | 21599 | ERR1374808 | ERX1445934 | ERS1035979 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281288 | SAMEA3728830 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728830|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:04Z|INSDC last update:2016 01 19T16:49:04Z|INSDC status:public|Submitter Id:6204f8f0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TCACATCTTCC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:6204f8f0 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#332 | 15545021 | Illumina sequencing of library 15545021 constructed from sample accession ERS1035979 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TCACATCTTCC. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#332.cram | cram | 3375156.0 | 26164.0 | SC RUN 18668 1#332 | 0:54 1:75 | A:921248;C:670747;G:688142;T:1095019;N:0 | 54 | 75 | 921248 | 670747 | 688142 | 1095019 | 0 | ERX1445934 | ERS1035979 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.21397 | 0.27154 | 0.21396 | 0.27109 | 1.0 | 0.99993 | 0.125 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | |||||||||||||||||
| 21600 | 21600 | ERR1374807 | ERX1445933 | ERS1035978 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281287 | SAMEA3728829 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728829|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:04Z|INSDC last update:2016 01 19T16:49:04Z|INSDC status:public|Submitter Id:61fbaa20 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TCAATTGTGCA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:61fbaa20 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#331 | 15545020 | Illumina sequencing of library 15545020 constructed from sample accession ERS1035978 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TCAATTGTGCA. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#331.cram | cram | 2819166.0 | 21854.0 | SC RUN 18668 1#331 | 0:54 1:75 | A:755540;C:568711;G:518826;T:976089;N:0 | 54 | 75 | 755540 | 568711 | 518826 | 976089 | 0 | ERX1445933 | ERS1035978 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.38278 | 0.42597 | 0.379 | 0.414 | 0.99991 | 0.99981 | 0.01315 | 0.5 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | ||||||||||||||||
| 21601 | 21601 | ERR1374806 | ERX1445932 | ERS1035977 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281286 | SAMEA3728828 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728828|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:03Z|INSDC status:public|Submitter Id:61f23440 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TATTGGCACTT is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:61f23440 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#330 | 15545019 | Illumina sequencing of library 15545019 constructed from sample accession ERS1035977 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TATTGGCACTT. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#330.cram | cram | 2357862.0 | 18278.0 | SC RUN 18668 1#330 | 0:54 1:75 | A:640714;C:464081;G:430399;T:822668;N:0 | 54 | 75 | 640714 | 464081 | 430399 | 822668 | 0 | ERX1445932 | ERS1035977 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.3993 | 0.46728 | 0.39923 | 0.46647 | 0.99997 | 0.99995 | 1.0 | 0.0 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | ||||||||||||||||
| 21602 | 21602 | ERR1374805 | ERX1445931 | ERS1035976 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281285 | SAMEA3728827 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728827|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:04Z|INSDC last update:2016 01 19T16:49:03Z|INSDC status:public|Submitter Id:61e8be60 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TATTATGCTTC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:61e8be60 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#329 | 15545018 | Illumina sequencing of library 15545018 constructed from sample accession ERS1035976 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TATTATGCTTC. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#329.cram | cram | 1651587.0 | 12803.0 | SC RUN 18668 1#329 | 0:54 1:75 | A:451712;C:326458;G:303137;T:570280;N:0 | 54 | 75 | 451712 | 326458 | 303137 | 570280 | 0 | ERX1445931 | ERS1035976 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.25978 | 0.36822 | 0.25968 | 0.36757 | 0.99997 | 0.99997 | 1.0 | 0.0 | 54 | 75 | B | B | mate1-mate2 similar by mapping diff | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | ||||||||||||||||
| 21603 | 21603 | ERR1374804 | ERX1445930 | ERS1035975 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281284 | SAMEA3728826 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728826|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:03Z|INSDC status:public|Submitter Id:61df6f90 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TATGAACAACT is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:61df6f90 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#328 | 15545017 | Illumina sequencing of library 15545017 constructed from sample accession ERS1035975 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TATGAACAACT. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#328.cram | cram | 1860696.0 | 14424.0 | SC RUN 18668 1#328 | 0:54 1:75 | A:478959;C:390421;G:353241;T:638075;N:0 | 54 | 75 | 478959 | 390421 | 353241 | 638075 | 0 | ERX1445930 | ERS1035975 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.22364 | 0.29493 | 0.22363 | 0.29419 | 1.0 | 0.99995 | 0.0 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | |||||||||||||||||
| 21604 | 21604 | ERR1374803 | ERX1445929 | ERS1035974 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281283 | SAMEA3728825 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728825|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:06Z|INSDC last update:2016 01 19T16:49:02Z|INSDC status:public|Submitter Id:61d620c0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TATAGATACGG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:61d620c0 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#327 | 15545016 | Illumina sequencing of library 15545016 constructed from sample accession ERS1035974 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TATAGATACGG. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#327.cram | cram | 2557425.0 | 19825.0 | SC RUN 18668 1#327 | 0:54 1:75 | A:652419;C:549992;G:476513;T:878501;N:0 | 54 | 75 | 652419 | 549992 | 476513 | 878501 | 0 | ERX1445929 | ERS1035974 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.32414 | 0.35749 | 0.32413 | 0.35741 | 1.0 | 0.99997 | 0.0 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | |||||||||||||||||
| 21605 | 21605 | ERR1374802 | ERX1445928 | ERS1035973 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281282 | SAMEA3728824 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728824|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:02Z|INSDC status:public|Submitter Id:61ccd1f0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TAGTTCCTATT is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:61ccd1f0 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#326 | 15545015 | Illumina sequencing of library 15545015 constructed from sample accession ERS1035973 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TAGTTCCTATT. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#326.cram | cram | 5223339.0 | 40491.0 | SC RUN 18668 1#326 | 0:54 1:75 | A:1438700;C:1030088;G:928639;T:1825912;N:0 | 54 | 75 | 1438700 | 1030088 | 928639 | 1825912 | 0 | ERX1445928 | ERS1035973 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.40078 | 0.45793 | 0.40053 | 0.45441 | 0.99995 | 0.99989 | 0.0 | 0.90265 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | ||||||||||||||||
| 21606 | 21606 | ERR1374801 | ERX1445927 | ERS1035972 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281281 | SAMEA3728823 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728823|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:01Z|INSDC status:public|Submitter Id:61c35c10 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TAGCCTTCTGT is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:61c35c10 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#325 | 15545014 | Illumina sequencing of library 15545014 constructed from sample accession ERS1035972 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TAGCCTTCTGT. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#325.cram | cram | 2968548.0 | 23012.0 | SC RUN 18668 1#325 | 0:54 1:75 | A:786528;C:620592;G:583862;T:977566;N:0 | 54 | 75 | 786528 | 620592 | 583862 | 977566 | 0 | ERX1445927 | ERS1035972 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.30578 | 0.36776 | 0.30562 | 0.3673 | 0.99995 | 0.99997 | 1.0 | 0.0 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | ||||||||||||||||
| 21607 | 21607 | ERR1374800 | ERX1445926 | ERS1035971 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281280 | SAMEA3728822 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728822|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:01Z|INSDC status:public|Submitter Id:61ba0d40 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TAGCCGCTTTG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:61ba0d40 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#324 | 15545013 | Illumina sequencing of library 15545013 constructed from sample accession ERS1035971 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TAGCCGCTTTG. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#324.cram | cram | 562956.0 | 4364.0 | SC RUN 18668 1#324 | 0:54 1:75 | A:150387;C:118286;G:109669;T:184614;N:0 | 54 | 75 | 150387 | 118286 | 109669 | 184614 | 0 | ERX1445926 | ERS1035971 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.33909 | 0.28899 | 0.33908 | 0.28636 | 1.0 | 0.99995 | 0.0 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | |||||||||||||||||
| 21608 | 21608 | ERR1374799 | ERX1445925 | ERS1035970 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281279 | SAMEA3728821 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728821|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:00Z|INSDC status:public|Submitter Id:61b0be70 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TAGATTTAACT is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:61b0be70 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#323 | 15545012 | Illumina sequencing of library 15545012 constructed from sample accession ERS1035970 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TAGATTTAACT. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#323.cram | cram | 1402359.0 | 10871.0 | SC RUN 18668 1#323 | 0:54 1:75 | A:379901;C:288769;G:264894;T:468795;N:0 | 54 | 75 | 379901 | 288769 | 264894 | 468795 | 0 | ERX1445925 | ERS1035970 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.20511 | 0.2728 | 0.205 | 0.27243 | 0.99997 | 0.99997 | 1.0 | 0.0 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | ||||||||||||||||
| 21609 | 21609 | ERR1374798 | ERX1445924 | ERS1035969 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281278 | SAMEA3728820 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728820|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:00Z|INSDC status:public|Submitter Id:61a74890 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TACTACCAGGT is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:61a74890 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#322 | 15545011 | Illumina sequencing of library 15545011 constructed from sample accession ERS1035969 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TACTACCAGGT. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#322.cram | cram | 1333731.0 | 10339.0 | SC RUN 18668 1#322 | 0:54 1:75 | A:337092;C:284245;G:275518;T:436876;N:0 | 54 | 75 | 337092 | 284245 | 275518 | 436876 | 0 | ERX1445924 | ERS1035969 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.24116 | 0.3051 | 0.24115 | 0.30497 | 1.0 | 0.99997 | 0.0 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | |||||||||||||||||
| 21610 | 21610 | ERR1374797 | ERX1445923 | ERS1035968 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281277 | SAMEA3728819 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728819|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:48:59Z|INSDC status:public|Submitter Id:619dd2b0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TACGTTGCCAG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:619dd2b0 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#321 | 15545010 | Illumina sequencing of library 15545010 constructed from sample accession ERS1035968 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TACGTTGCCAG. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#321.cram | cram | 1445445.0 | 11205.0 | SC RUN 18668 1#321 | 0:54 1:75 | A:374269;C:298459;G:274437;T:498280;N:0 | 54 | 75 | 374269 | 298459 | 274437 | 498280 | 0 | ERX1445923 | ERS1035968 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.38436 | 0.4496 | 0.38435 | 0.44755 | 1.0 | 0.99993 | 0.0 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | |||||||||||||||||
| 21611 | 21611 | ERR1374796 | ERX1445922 | ERS1035967 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281276 | SAMEA3728818 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728818|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:48:59Z|INSDC status:public|Submitter Id:619483e0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TACCGAGTCTC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:619483e0 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#320 | 15545009 | Illumina sequencing of library 15545009 constructed from sample accession ERS1035967 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TACCGAGTCTC. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#320.cram | cram | 1888431.0 | 14639.0 | SC RUN 18668 1#320 | 0:54 1:75 | A:490856;C:386609;G:362675;T:648291;N:0 | 54 | 75 | 490856 | 386609 | 362675 | 648291 | 0 | ERX1445922 | ERS1035967 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.36908 | 0.45207 | 0.36907 | 0.45062 | 1.0 | 0.99995 | 0.375 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | |||||||||||||||||
| 21612 | 21612 | ERR1374795 | ERX1445921 | ERS1035966 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281275 | SAMEA3728817 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728817|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:06Z|INSDC last update:2016 01 19T16:48:58Z|INSDC status:public|Submitter Id:618b0e00 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TAATTTTCCCC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:618b0e00 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#319 | 15545008 | Illumina sequencing of library 15545008 constructed from sample accession ERS1035966 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TAATTTTCCCC. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#319.cram | cram | 2233248.0 | 17312.0 | SC RUN 18668 1#319 | 0:54 1:75 | A:629373;C:434567;G:430085;T:739223;N:0 | 54 | 75 | 629373 | 434567 | 430085 | 739223 | 0 | ERX1445921 | ERS1035966 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.26765 | 0.30998 | 0.26757 | 0.30966 | 0.99997 | 0.99995 | 0.0 | 0.0 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | ||||||||||||||||
| 21613 | 21613 | ERR1374794 | ERX1445920 | ERS1035965 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281274 | SAMEA3728816 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728816|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:48:58Z|INSDC status:public|Submitter Id:6181bf30 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TAATGTGGTCA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:6181bf30 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#318 | 15545007 | Illumina sequencing of library 15545007 constructed from sample accession ERS1035965 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TAATGTGGTCA. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#318.cram | cram | 2472801.0 | 19169.0 | SC RUN 18668 1#318 | 0:54 1:75 | A:641073;C:541906;G:463396;T:826426;N:0 | 54 | 75 | 641073 | 541906 | 463396 | 826426 | 0 | ERX1445920 | ERS1035965 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.34172 | 0.35186 | 0.34171 | 0.35139 | 1.0 | 0.99997 | 0.0 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | |||||||||||||||||
| 21614 | 21614 | ERR1374793 | ERX1445919 | ERS1035964 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281273 | SAMEA3728815 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728815|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:48:58Z|INSDC status:public|Submitter Id:61784950 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TAATAATTACA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:61784950 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#317 | 15545006 | Illumina sequencing of library 15545006 constructed from sample accession ERS1035964 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TAATAATTACA. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#317.cram | cram | 5019390.0 | 38910.0 | SC RUN 18668 1#317 | 0:54 1:75 | A:1356210;C:1017960;G:900281;T:1744939;N:0 | 54 | 75 | 1356210 | 1017960 | 900281 | 1744939 | 0 | ERX1445919 | ERS1035964 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.28383 | 0.31352 | 0.28382 | 0.31021 | 1.0 | 0.99997 | 1.0 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | |||||||||||||||||
| 21615 | 21615 | ERR1374792 | ERX1445918 | ERS1035963 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281272 | SAMEA3728814 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728814|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:48:57Z|INSDC status:public|Submitter Id:616efa80 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TAAGGTTAGAT is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:616efa80 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#316 | 15545005 | Illumina sequencing of library 15545005 constructed from sample accession ERS1035963 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TAAGGTTAGAT. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#316.cram | cram | 3935403.0 | 30507.0 | SC RUN 18668 1#316 | 0:54 1:75 | A:1036371;C:840041;G:768728;T:1290263;N:0 | 54 | 75 | 1036371 | 840041 | 768728 | 1290263 | 0 | ERX1445918 | ERS1035963 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.18228 | 0.24261 | 0.18224 | 0.24165 | 0.99997 | 0.99991 | 1.0 | 0.13043 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | ||||||||||||||||
| 21616 | 21616 | ERR1374791 | ERX1445917 | ERS1035962 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281271 | SAMEA3728813 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728813|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:04Z|INSDC last update:2016 01 19T16:48:57Z|INSDC status:public|Submitter Id:616584a0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TAAATACCATC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:616584a0 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#315 | 15545004 | Illumina sequencing of library 15545004 constructed from sample accession ERS1035962 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TAAATACCATC. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#315.cram | cram | 3980037.0 | 30853.0 | SC RUN 18668 1#315 | 0:54 1:75 | A:1072227;C:761798;G:740223;T:1405789;N:0 | 54 | 75 | 1072227 | 761798 | 740223 | 1405789 | 0 | ERX1445917 | ERS1035962 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.19278 | 0.3107 | 0.19269 | 0.30832 | 0.99995 | 0.99995 | 1.0 | 0.85185 | 54 | 75 | B | B | mate1-mate2 similar by mapping diff | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | ||||||||||||||||
| 21617 | 21617 | ERR1374790 | ERX1445916 | ERS1035961 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281270 | SAMEA3728812 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728812|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:04Z|INSDC last update:2016 01 19T16:48:56Z|INSDC status:public|Submitter Id:615c35d0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TAAAGTCATGC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:615c35d0 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#314 | 15545003 | Illumina sequencing of library 15545003 constructed from sample accession ERS1035961 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TAAAGTCATGC. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#314.cram | cram | 4752489.0 | 36841.0 | SC RUN 18668 1#314 | 0:54 1:75 | A:1274157;C:961464;G:890805;T:1626063;N:0 | 54 | 75 | 1274157 | 961464 | 890805 | 1626063 | 0 | ERX1445916 | ERS1035961 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.2673 | 0.34758 | 0.26729 | 0.32733 | 1.0 | 0.99983 | 0.46739 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | |||||||||||||||||
| 21618 | 21618 | ERR1374789 | ERX1445915 | ERS1035960 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281269 | SAMEA3728811 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728811|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:06Z|INSDC last update:2016 01 19T16:48:56Z|INSDC status:public|Submitter Id:6152bff0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GTTTTCATAAG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:6152bff0 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#313 | 15545002 | Illumina sequencing of library 15545002 constructed from sample accession ERS1035960 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence GTTTTCATAAG. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#313.cram | cram | 2999250.0 | 23250.0 | SC RUN 18668 1#313 | 0:54 1:75 | A:788141;C:633372;G:552719;T:1025018;N:0 | 54 | 75 | 788141 | 633372 | 552719 | 1025018 | 0 | ERX1445915 | ERS1035960 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.38742 | 0.42111 | 0.38741 | 0.4211 | 1.0 | 1.0 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | ||||||||||||||||||
| 21619 | 21619 | ERR1374788 | ERX1445914 | ERS1035959 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281268 | SAMEA3728810 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728810|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:48:55Z|INSDC status:public|Submitter Id:61497120 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GTTTGTATGTC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:61497120 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#312 | 15545001 | Illumina sequencing of library 15545001 constructed from sample accession ERS1035959 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence GTTTGTATGTC. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#312.cram | cram | 1283421.0 | 9949.0 | SC RUN 18668 1#312 | 0:54 1:75 | A:349855;C:274932;G:249255;T:409379;N:0 | 54 | 75 | 349855 | 274932 | 249255 | 409379 | 0 | ERX1445914 | ERS1035959 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.2614 | 0.33378 | 0.26094 | 0.32532 | 0.99997 | 0.99993 | 0.0 | 0.76271 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | ||||||||||||||||
| 21620 | 21620 | ERR1374787 | ERX1445913 | ERS1035958 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281267 | SAMEA3728809 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728809|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:48:55Z|INSDC status:public|Submitter Id:613ffb40 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GTTGTGTAGCT is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:613ffb40 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#311 | 15545000 | Illumina sequencing of library 15545000 constructed from sample accession ERS1035958 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence GTTGTGTAGCT. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#311.cram | cram | 648612.0 | 5028.0 | SC RUN 18668 1#311 | 0:54 1:75 | A:162874;C:158142;G:139300;T:188296;N:0 | 54 | 75 | 162874 | 158142 | 139300 | 188296 | 0 | ERX1445913 | ERS1035958 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.11688 | 0.12832 | 0.11687 | 0.12831 | 1.0 | 1.0 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | ||||||||||||||||||
| 21621 | 21621 | ERR1374786 | ERX1445912 | ERS1035957 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281266 | SAMEA3728808 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728808|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:06Z|INSDC last update:2016 01 19T16:48:54Z|INSDC status:public|Submitter Id:61368560 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GTTGACGAATA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:61368560 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#310 | 15544999 | Illumina sequencing of library 15544999 constructed from sample accession ERS1035957 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence GTTGACGAATA. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#310.cram | cram | 2499633.0 | 19377.0 | SC RUN 18668 1#310 | 0:54 1:75 | A:643386;C:547055;G:481118;T:828074;N:0 | 54 | 75 | 643386 | 547055 | 481118 | 828074 | 0 | ERX1445912 | ERS1035957 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.23451 | 0.24928 | 0.23439 | 0.24765 | 0.99995 | 0.99993 | 0.5 | 0.0 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | ||||||||||||||||
| 21622 | 21622 | ERR1374785 | ERX1445911 | ERS1035956 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281265 | SAMEA3728807 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728807|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:48:54Z|INSDC status:public|Submitter Id:612d3690 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GTTAGATTGCA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:612d3690 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#309 | 15544998 | Illumina sequencing of library 15544998 constructed from sample accession ERS1035956 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence GTTAGATTGCA. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#309.cram | cram | 1439124.0 | 11156.0 | SC RUN 18668 1#309 | 0:54 1:75 | A:374367;C:312581;G:280472;T:471704;N:0 | 54 | 75 | 374367 | 312581 | 280472 | 471704 | 0 | ERX1445911 | ERS1035956 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.24464 | 0.2853 | 0.24453 | 0.28407 | 0.99997 | 0.99997 | 1.0 | 0.0 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | ||||||||||||||||
| 21623 | 21623 | ERR1374784 | ERX1445910 | ERS1035955 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281264 | SAMEA3728806 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728806|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:04Z|INSDC last update:2016 01 19T16:48:54Z|INSDC status:public|Submitter Id:61234b80 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GTGTTACTTCC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:61234b80 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#308 | 15544997 | Illumina sequencing of library 15544997 constructed from sample accession ERS1035955 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence GTGTTACTTCC. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#308.cram | cram | 2583354.0 | 20026.0 | SC RUN 18668 1#308 | 0:54 1:75 | A:707979;C:517605;G:485253;T:872517;N:0 | 54 | 75 | 707979 | 517605 | 485253 | 872517 | 0 | ERX1445910 | ERS1035955 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.33131 | 0.40173 | 0.3313 | 0.38929 | 1.0 | 0.99993 | 0.89784 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | |||||||||||||||||
| 21624 | 21624 | ERR1374783 | ERX1445909 | ERS1035954 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281263 | SAMEA3728805 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728805|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:04Z|INSDC last update:2016 01 19T16:48:53Z|INSDC status:public|Submitter Id:6119fcb0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GTGAGGTATGT is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:6119fcb0 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#307 | 15544996 | Illumina sequencing of library 15544996 constructed from sample accession ERS1035954 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence GTGAGGTATGT. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#307.cram | cram | 2186163.0 | 16947.0 | SC RUN 18668 1#307 | 0:54 1:75 | A:542435;C:523253;G:473929;T:646546;N:0 | 54 | 75 | 542435 | 523253 | 473929 | 646546 | 0 | ERX1445909 | ERS1035954 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.1948 | 0.20473 | 0.19451 | 0.20465 | 0.99993 | 0.99997 | 0.5 | 1.0 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | ||||||||||||||||
| 21625 | 21625 | ERR1374782 | ERX1445908 | ERS1035953 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281262 | SAMEA3728804 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728804|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:04Z|INSDC last update:2016 01 19T16:48:53Z|INSDC status:public|Submitter Id:611086d0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GTGACAGCTAC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:611086d0 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#306 | 15544995 | Illumina sequencing of library 15544995 constructed from sample accession ERS1035953 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence GTGACAGCTAC. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#306.cram | cram | 2326773.0 | 18037.0 | SC RUN 18668 1#306 | 0:54 1:75 | A:599863;C:495277;G:479237;T:752396;N:0 | 54 | 75 | 599863 | 495277 | 479237 | 752396 | 0 | ERX1445908 | ERS1035953 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.24014 | 0.25494 | 0.24013 | 0.24335 | 1.0 | 0.99993 | 0.0 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | |||||||||||||||||
| 21626 | 21626 | ERR1374781 | ERX1445907 | ERS1035952 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281261 | SAMEA3728803 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728803|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:48:52Z|INSDC status:public|Submitter Id:6106e9e0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GTCTTTGATTA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:6106e9e0 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#305 | 15544994 | Illumina sequencing of library 15544994 constructed from sample accession ERS1035952 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence GTCTTTGATTA. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#305.cram | cram | 4793769.0 | 37161.0 | SC RUN 18668 1#305 | 0:54 1:75 | A:1318173;C:970407;G:861687;T:1643502;N:0 | 54 | 75 | 1318173 | 970407 | 861687 | 1643502 | 0 | ERX1445907 | ERS1035952 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.27744 | 0.38766 | 0.2774 | 0.38235 | 0.99997 | 0.99979 | 1.0 | 0.01324 | 54 | 75 | B | B | mate1-mate2 similar by mapping diff | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | ||||||||||||||||
| 21627 | 21627 | ERR1374780 | ERX1445906 | ERS1035951 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281260 | SAMEA3728802 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728802|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:48:52Z|INSDC status:public|Submitter Id:60fd9b10 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GTCAGGTTCAG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:60fd9b10 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#304 | 15544993 | Illumina sequencing of library 15544993 constructed from sample accession ERS1035951 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence GTCAGGTTCAG. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#304.cram | cram | 2696358.0 | 20902.0 | SC RUN 18668 1#304 | 0:54 1:75 | A:702537;C:601477;G:538319;T:854025;N:0 | 54 | 75 | 702537 | 601477 | 538319 | 854025 | 0 | ERX1445906 | ERS1035951 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.2466 | 0.30901 | 0.24653 | 0.30866 | 0.99997 | 0.99995 | 1.0 | 0.0 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | ||||||||||||||||
| 21628 | 21628 | ERR1374779 | ERX1445905 | ERS1035950 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281259 | SAMEA3728801 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728801|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:48:52Z|INSDC status:public|Submitter Id:60f44c40 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GTCACCATGGA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:60f44c40 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#303 | 15544992 | Illumina sequencing of library 15544992 constructed from sample accession ERS1035950 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence GTCACCATGGA. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#303.cram | cram | 1360047.0 | 10543.0 | SC RUN 18668 1#303 | 0:54 1:75 | A:344956;C:299761;G:277607;T:437723;N:0 | 54 | 75 | 344956 | 299761 | 277607 | 437723 | 0 | ERX1445905 | ERS1035950 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.19903 | 0.2592 | 0.19902 | 0.25919 | 1.0 | 1.0 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | ||||||||||||||||||
| 21629 | 21629 | ERR1374778 | ERX1445904 | ERS1035949 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281258 | SAMEA3728800 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728800|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:04Z|INSDC last update:2016 01 19T16:48:51Z|INSDC status:public|Submitter Id:60eafd70 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GTAGTCGATAT is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:60eafd70 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#302 | 15544991 | Illumina sequencing of library 15544991 constructed from sample accession ERS1035949 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence GTAGTCGATAT. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#302.cram | cram | 3251445.0 | 25205.0 | SC RUN 18668 1#302 | 0:54 1:75 | A:845741;C:700258;G:637199;T:1068247;N:0 | 54 | 75 | 845741 | 700258 | 637199 | 1068247 | 0 | ERX1445904 | ERS1035949 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.26977 | 0.31719 | 0.26972 | 0.31333 | 0.99997 | 0.99995 | 1.0 | 0.98717 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | ||||||||||||||||
| 21630 | 21630 | ERR1374777 | ERX1445903 | ERS1035948 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281257 | SAMEA3728799 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728799|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:04Z|INSDC last update:2016 01 19T16:48:51Z|INSDC status:public|Submitter Id:60e18790 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GTAGATCGCTA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:60e18790 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#301 | 15544990 | Illumina sequencing of library 15544990 constructed from sample accession ERS1035948 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence GTAGATCGCTA. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#301.cram | cram | 2827293.0 | 21917.0 | SC RUN 18668 1#301 | 0:54 1:75 | A:727124;C:621741;G:571198;T:907230;N:0 | 54 | 75 | 727124 | 621741 | 571198 | 907230 | 0 | ERX1445903 | ERS1035948 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.17368 | 0.23345 | 0.17367 | 0.22822 | 1.0 | 0.99993 | 0.9759 | 54 | 75 | B | B | mate1-mate2 similar by mapping diff | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | |||||||||||||||||
| 21631 | 21631 | ERR1374776 | ERX1445902 | ERS1035947 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281256 | SAMEA3728798 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728798|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:04Z|INSDC last update:2016 01 19T16:48:51Z|INSDC status:public|Submitter Id:60d5eed0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GTAGAATGAGT is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:60d5eed0 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#300 | 15544989 | Illumina sequencing of library 15544989 constructed from sample accession ERS1035947 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence GTAGAATGAGT. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#300.cram | cram | 892680.0 | 6920.0 | SC RUN 18668 1#300 | 0:54 1:75 | A:221017;C:212028;G:205753;T:253882;N:0 | 54 | 75 | 221017 | 212028 | 205753 | 253882 | 0 | ERX1445902 | ERS1035947 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.0453 | 0.04419 | 0.04529 | 0.04222 | 1.0 | 0.99997 | 1.0 | 54 | 75 | T | T | mates < 9% mapping rate | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | |||||||||||||||||
| 21632 | 21632 | ERR1374775 | ERX1445901 | ERS1035946 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281255 | SAMEA3728797 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728797|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:48:50Z|INSDC status:public|Submitter Id:60cc78f0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GTACATGTCAC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:60cc78f0 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#299 | 15544988 | Illumina sequencing of library 15544988 constructed from sample accession ERS1035946 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence GTACATGTCAC. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#299.cram | cram | 752715.0 | 5835.0 | SC RUN 18668 1#299 | 0:54 1:75 | A:196366;C:157933;G:147146;T:251270;N:0 | 54 | 75 | 196366 | 157933 | 147146 | 251270 | 0 | ERX1445901 | ERS1035946 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.22468 | 0.2529 | 0.22467 | 0.24782 | 1.0 | 0.99995 | 0.0 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | |||||||||||||||||
| 21633 | 21633 | ERR1374774 | ERX1445900 | ERS1035945 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281254 | SAMEA3728796 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728796|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:06Z|INSDC last update:2016 01 19T16:48:50Z|INSDC status:public|Submitter Id:60c32a20 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GTAACTGAGTG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:60c32a20 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#298 | 15544987 | Illumina sequencing of library 15544987 constructed from sample accession ERS1035945 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence GTAACTGAGTG. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#298.cram | cram | 1259427.0 | 9763.0 | SC RUN 18668 1#298 | 0:54 1:75 | A:322614;C:276321;G:237926;T:422566;N:0 | 54 | 75 | 322614 | 276321 | 237926 | 422566 | 0 | ERX1445900 | ERS1035945 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.314 | 0.40443 | 0.31399 | 0.37728 | 1.0 | 0.99995 | 0.9526 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | |||||||||||||||||
| 21634 | 21634 | ERR1374773 | ERX1445899 | ERS1035944 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281253 | SAMEA3728795 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728795|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:04Z|INSDC last update:2016 01 19T16:48:49Z|INSDC status:public|Submitter Id:60b9b440 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GGTGTTGTTTT is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:60b9b440 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#297 | 15544986 | Illumina sequencing of library 15544986 constructed from sample accession ERS1035944 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence GGTGTTGTTTT. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#297.cram | cram | 1356435.0 | 10515.0 | SC RUN 18668 1#297 | 0:54 1:75 | A:375480;C:286550;G:244906;T:449499;N:0 | 54 | 75 | 375480 | 286550 | 244906 | 449499 | 0 | ERX1445899 | ERS1035944 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.30321 | 0.36732 | 0.30299 | 0.35904 | 0.99995 | 0.99997 | 0.5 | 1.0 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | ||||||||||||||||
| 21635 | 21635 | ERR1374772 | ERX1445898 | ERS1035943 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281252 | SAMEA3728794 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728794|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:04Z|INSDC last update:2016 01 19T16:48:49Z|INSDC status:public|Submitter Id:60b06570 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GGTCTCCTTGC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:60b06570 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#296 | 15544985 | Illumina sequencing of library 15544985 constructed from sample accession ERS1035943 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence GGTCTCCTTGC. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#296.cram | cram | 1023099.0 | 7931.0 | SC RUN 18668 1#296 | 0:54 1:75 | A:270409;C:210066;G:196557;T:346067;N:0 | 54 | 75 | 270409 | 210066 | 196557 | 346067 | 0 | ERX1445898 | ERS1035943 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.37783 | 0.4877 | 0.37782 | 0.48769 | 1.0 | 1.0 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | ||||||||||||||||||
| 21636 | 21636 | ERR1374771 | ERX1445897 | ERS1035942 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281251 | SAMEA3728793 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728793|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:04Z|INSDC last update:2016 01 19T16:48:48Z|INSDC status:public|Submitter Id:60a716a0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GGTCCTTCGAT is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:60a716a0 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#295 | 15544984 | Illumina sequencing of library 15544984 constructed from sample accession ERS1035942 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence GGTCCTTCGAT. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#295.cram | cram | 1589151.0 | 12319.0 | SC RUN 18668 1#295 | 0:54 1:75 | A:422340;C:319091;G:289675;T:558045;N:0 | 54 | 75 | 422340 | 319091 | 289675 | 558045 | 0 | ERX1445897 | ERS1035942 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.43557 | 0.52736 | 0.43556 | 0.51036 | 1.0 | 0.99995 | 0.0 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined | |||||||||||||||||
| 21637 | 21637 | ERR1374770 | ERX1445896 | ERS1035941 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281250 | SAMEA3728792 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728792|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:48:48Z|INSDC status:public|Submitter Id:609c8f50 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GGGTTTTACCA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:609c8f50 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#294 | 15544983 | Illumina sequencing of library 15544983 constructed from sample accession ERS1035941 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence GGGTTTTACCA. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#294.cram | cram | 1482468.0 | 11492.0 | SC RUN 18668 1#294 | 0:54 1:75 | A:398825;C:317479;G:296518;T:469646;N:0 | 54 | 75 | 398825 | 317479 | 296518 | 469646 | 0 | ERX1445896 | ERS1035941 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.22324 | 0.26858 | 0.22196 | 0.25454 | 0.99997 | 0.99993 | 1.0 | 0.825 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined |
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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;