metadata: run_metadata: 24 rows where experiment.library_selection = "cDNA", experiment.library_strategy = "miRNA-Seq" and tissue

24 rows where experiment.library_selection = "cDNA", experiment.library_strategy = "miRNA-Seq" and tissue_curation = "Whole Organism"

descending

Link	rowid ▼	run.accession	experiment.accession	sample.accession	study.accession	bioproject	study.title	study.alias	study.type	study.abstract	sample.description	sample.title	sample.alias	sample.attributes	experiment.title	experiment.alias	experiment.library_name	experiment.design_description	experiment.library_strategy	experiment.library_source	experiment.library_selection	experiment.library_layout	experiment.platform	experiment.instrument_model	experiment.study_ref	run.filename	run.semantic_name	run.total_bases	run.total_spots	run.alias	run.read_lengths	run.base_counts	run.r1_length	run.r2_length	run.Acount	run.Ccount	run.Gcount	run.Tcount	run.Ncount	run.experiment	run.pool_member	submission.accession	submission.srasource	submission.bioprojectsource	seqdetective.n_mates	seqdetective.mapping_rate.mate1	seqdetective.nofeature_rate.mate1	seqdetective.sparsity.mate1	seqdetective.pos_strand_rate.mate1	seqdetective.readlen.mate1	seqdetective.judgement.mate1	seqdetective.judgement.reason	platform_family	instrument_generation	read_bias	selection_class	prep_kit	sc_or_bulk	tech_class	technology	submission.bioprojectsource.country	earliest_date	devstage_curation	devstage_curation_coarse	tissue_curation	tissue_curation_coarse
41457	41457	SRR4449278	SRX2267734	SRS1758938	SRP092030	PRJNA350377	Zebrafish Danio Rerio small RNA seq at approx. 50% epiboly	PRJNA350377	Transcriptome Analysis	Small RNAseq experiment of individual embryos from the 8 different spawns taken at gastrulation at approximately 50% epiboly	Danio rerio embryo at approx. 50% epiboly	Danio rerio embryo at approx. 50% epiboly	S09 RID0445	strain:ABTL\|dev stage:54% epiboly\|sex:not applicable\|tissue:whole embryo\|BioSampleModel:Model organism or animal	S09	S09 RID0445	S09 RID0445	Bar coded small RNA sequencing libraries were generated using the Ion Total RNA Seq Kit v2 and the Ion Xpress RNA Seq bar coding kit Thermo Fisher Scientific. Size distribution and yield of the resulting barcoded libraries were assessed using the 2200 TapeStation System with Agilent D1K ScreenTapes Agilent Technologies. Libraries were prepared for sequencing on the Ion Chef System Thermo Fisher Scientific. Sequencing was performed on an Ion Proton System using Ion PI v3 chips Thermo Fisher Scientific.	miRNA-Seq	TRANSCRIPTOMIC	cDNA	SINGLE	ION_TORRENT	Ion Torrent Proton	SRP092030	IonXpressRNA_009_rawlib.basecaller.bam	bam	56886794.0	2186951.0	IonXpressRNA 009 rawlib.basecaller.bam	0:26.01	A:15763527;C:12934017;G:13233004;T:14956246;N:0	26		15763527	12934017	13233004	14956246	0	SRX2267734	SRS1758938	SRA486759	UNIVERSITY OF AMSTERDAM, SILS\|RB&AB	UNIVERSITY OF AMSTERDAM, SILS	1	0.6501	0.44849	0.83465	0.59625	26	B	usable mapping rate	ion_torrent	ion_torrent	unknown	small_rna	unknown	bulk	unknown	unknown	Netherlands	2016-10-25	Gastrula	Embryo	Whole Organism	All anatomical structures
41458	41458	SRR4449277	SRX2267733	SRS1758937	SRP092030	PRJNA350377	Zebrafish Danio Rerio small RNA seq at approx. 50% epiboly	PRJNA350377	Transcriptome Analysis	Small RNAseq experiment of individual embryos from the 8 different spawns taken at gastrulation at approximately 50% epiboly	Danio rerio embryo at approx. 50% epiboly	Danio rerio embryo at approx. 50% epiboly	S10 RID0445	strain:ABTL\|dev stage:51% epiboly\|sex:not applicable\|tissue:whole embryo\|BioSampleModel:Model organism or animal	S10	S10 RID0445	S10 RID0445	Bar coded small RNA sequencing libraries were generated using the Ion Total RNA Seq Kit v2 and the Ion Xpress RNA Seq bar coding kit Thermo Fisher Scientific. Size distribution and yield of the resulting barcoded libraries were assessed using the 2200 TapeStation System with Agilent D1K ScreenTapes Agilent Technologies. Libraries were prepared for sequencing on the Ion Chef System Thermo Fisher Scientific. Sequencing was performed on an Ion Proton System using Ion PI v3 chips Thermo Fisher Scientific.	miRNA-Seq	TRANSCRIPTOMIC	cDNA	SINGLE	ION_TORRENT	Ion Torrent Proton	SRP092030	IonXpressRNA_010_rawlib.basecaller.bam	bam	63108712.0	2361941.0	IonXpressRNA 010 rawlib.basecaller.bam	0:26.72	A:16956361;C:14496251;G:15049416;T:16606684;N:0	26		16956361	14496251	15049416	16606684	0	SRX2267733	SRS1758937	SRA486759	UNIVERSITY OF AMSTERDAM, SILS\|RB&AB	UNIVERSITY OF AMSTERDAM, SILS	1	0.64387	0.42592	0.81091	0.58276	22	B	usable mapping rate	ion_torrent	ion_torrent	unknown	small_rna	unknown	bulk	unknown	unknown	Netherlands	2017-11-01	Gastrula	Embryo	Whole Organism	All anatomical structures
41459	41459	SRR4449276	SRX2267732	SRS1758936	SRP092030	PRJNA350377	Zebrafish Danio Rerio small RNA seq at approx. 50% epiboly	PRJNA350377	Transcriptome Analysis	Small RNAseq experiment of individual embryos from the 8 different spawns taken at gastrulation at approximately 50% epiboly	Danio rerio embryo at approx. 50% epiboly	Danio rerio embryo at approx. 50% epiboly	S07 RID0445	strain:ABTL\|dev stage:47% epiboly\|sex:not applicable\|tissue:whole embryo\|BioSampleModel:Model organism or animal	S07	S07 RID0445	S07 RID0445	Bar coded small RNA sequencing libraries were generated using the Ion Total RNA Seq Kit v2 and the Ion Xpress RNA Seq bar coding kit Thermo Fisher Scientific. Size distribution and yield of the resulting barcoded libraries were assessed using the 2200 TapeStation System with Agilent D1K ScreenTapes Agilent Technologies. Libraries were prepared for sequencing on the Ion Chef System Thermo Fisher Scientific. Sequencing was performed on an Ion Proton System using Ion PI v3 chips Thermo Fisher Scientific.	miRNA-Seq	TRANSCRIPTOMIC	cDNA	SINGLE	ION_TORRENT	Ion Torrent Proton	SRP092030	IonXpressRNA_007_rawlib.basecaller.bam	bam	50356775.0	1885340.0	IonXpressRNA 007 rawlib.basecaller.bam	0:26.71	A:13603929;C:11508700;G:12096780;T:13147366;N:0	26		13603929	11508700	12096780	13147366	0	SRX2267732	SRS1758936	SRA486759	UNIVERSITY OF AMSTERDAM, SILS\|RB&AB	UNIVERSITY OF AMSTERDAM, SILS	1	0.63582	0.39586	0.79839	0.56846	22	B	usable mapping rate	ion_torrent	ion_torrent	unknown	small_rna	unknown	bulk	unknown	unknown	Netherlands	2017-11-01	Gastrula	Embryo	Whole Organism	All anatomical structures
41460	41460	SRR4449275	SRX2267731	SRS1758935	SRP092030	PRJNA350377	Zebrafish Danio Rerio small RNA seq at approx. 50% epiboly	PRJNA350377	Transcriptome Analysis	Small RNAseq experiment of individual embryos from the 8 different spawns taken at gastrulation at approximately 50% epiboly	Danio rerio embryo at approx. 50% epiboly	Danio rerio embryo at approx. 50% epiboly	S08 RID0445	strain:ABTL\|dev stage:53% epiboly\|sex:not applicable\|tissue:whole embryo\|BioSampleModel:Model organism or animal	S08	S08 RID0445	S08 RID0445	Bar coded small RNA sequencing libraries were generated using the Ion Total RNA Seq Kit v2 and the Ion Xpress RNA Seq bar coding kit Thermo Fisher Scientific. Size distribution and yield of the resulting barcoded libraries were assessed using the 2200 TapeStation System with Agilent D1K ScreenTapes Agilent Technologies. Libraries were prepared for sequencing on the Ion Chef System Thermo Fisher Scientific. Sequencing was performed on an Ion Proton System using Ion PI v3 chips Thermo Fisher Scientific.	miRNA-Seq	TRANSCRIPTOMIC	cDNA	SINGLE	ION_TORRENT	Ion Torrent Proton	SRP092030	IonXpressRNA_008_rawlib.basecaller.bam	bam	63655011.0	2486240.0	IonXpressRNA 008 rawlib.basecaller.bam	0:25.60	A:17274215;C:14286496;G:15277222;T:16817078;N:0	25		17274215	14286496	15277222	16817078	0	SRX2267731	SRS1758935	SRA486759	UNIVERSITY OF AMSTERDAM, SILS\|RB&AB	UNIVERSITY OF AMSTERDAM, SILS	1	0.64165	0.41617	0.79931	0.56754	34	B	usable mapping rate	ion_torrent	ion_torrent	unknown	small_rna	unknown	bulk	unknown	unknown	Netherlands	2017-11-01	Gastrula	Embryo	Whole Organism	All anatomical structures
41461	41461	SRR4449274	SRX2267730	SRS1758933	SRP092030	PRJNA350377	Zebrafish Danio Rerio small RNA seq at approx. 50% epiboly	PRJNA350377	Transcriptome Analysis	Small RNAseq experiment of individual embryos from the 8 different spawns taken at gastrulation at approximately 50% epiboly	Danio rerio embryo at approx. 50% epiboly	Danio rerio embryo at approx. 50% epiboly	S05 RID0445	strain:ABTL\|dev stage:58% epiboly\|sex:not applicable\|tissue:whole embryo\|BioSampleModel:Model organism or animal	S05	S05 RID0445	S05 RID0445	Bar coded small RNA sequencing libraries were generated using the Ion Total RNA Seq Kit v2 and the Ion Xpress RNA Seq bar coding kit Thermo Fisher Scientific. Size distribution and yield of the resulting barcoded libraries were assessed using the 2200 TapeStation System with Agilent D1K ScreenTapes Agilent Technologies. Libraries were prepared for sequencing on the Ion Chef System Thermo Fisher Scientific. Sequencing was performed on an Ion Proton System using Ion PI v3 chips Thermo Fisher Scientific.	miRNA-Seq	TRANSCRIPTOMIC	cDNA	SINGLE	ION_TORRENT	Ion Torrent Proton	SRP092030	IonXpressRNA_005_rawlib.basecaller.bam	bam	36352941.0	1403002.0	IonXpressRNA 005 rawlib.basecaller.bam	0:25.91	A:10088289;C:8176923;G:8667822;T:9419907;N:0	25		10088289	8176923	8667822	9419907	0	SRX2267730	SRS1758933	SRA486759	UNIVERSITY OF AMSTERDAM, SILS\|RB&AB	UNIVERSITY OF AMSTERDAM, SILS	1	0.59289	0.36407	0.80213	0.57695	26	B	usable mapping rate	ion_torrent	ion_torrent	unknown	small_rna	unknown	bulk	unknown	unknown	Netherlands	2017-11-01	Gastrula	Embryo	Whole Organism	All anatomical structures
41462	41462	SRR4449273	SRX2267729	SRS1758934	SRP092030	PRJNA350377	Zebrafish Danio Rerio small RNA seq at approx. 50% epiboly	PRJNA350377	Transcriptome Analysis	Small RNAseq experiment of individual embryos from the 8 different spawns taken at gastrulation at approximately 50% epiboly	Danio rerio embryo at approx. 50% epiboly	Danio rerio embryo at approx. 50% epiboly	S06 RID0445	strain:ABTL\|dev stage:43% epiboly\|sex:not applicable\|tissue:whole embryo\|BioSampleModel:Model organism or animal	S06	S06 RID0445	S06 RID0445	Bar coded small RNA sequencing libraries were generated using the Ion Total RNA Seq Kit v2 and the Ion Xpress RNA Seq bar coding kit Thermo Fisher Scientific. Size distribution and yield of the resulting barcoded libraries were assessed using the 2200 TapeStation System with Agilent D1K ScreenTapes Agilent Technologies. Libraries were prepared for sequencing on the Ion Chef System Thermo Fisher Scientific. Sequencing was performed on an Ion Proton System using Ion PI v3 chips Thermo Fisher Scientific.	miRNA-Seq	TRANSCRIPTOMIC	cDNA	SINGLE	ION_TORRENT	Ion Torrent Proton	SRP092030	IonXpressRNA_006_rawlib.basecaller.bam	bam	41157611.0	1592351.0	IonXpressRNA 006 rawlib.basecaller.bam	0:25.85	A:11322629;C:9228187;G:9750979;T:10855816;N:0	25		11322629	9228187	9750979	10855816	0	SRX2267729	SRS1758934	SRA486759	UNIVERSITY OF AMSTERDAM, SILS\|RB&AB	UNIVERSITY OF AMSTERDAM, SILS	1	0.63095	0.40683	0.8003	0.56985	29	B	usable mapping rate	ion_torrent	ion_torrent	unknown	small_rna	unknown	bulk	unknown	unknown	Netherlands	2017-11-01	Gastrula	Embryo	Whole Organism	All anatomical structures
41463	41463	SRR4449272	SRX2267728	SRS1758932	SRP092030	PRJNA350377	Zebrafish Danio Rerio small RNA seq at approx. 50% epiboly	PRJNA350377	Transcriptome Analysis	Small RNAseq experiment of individual embryos from the 8 different spawns taken at gastrulation at approximately 50% epiboly	Danio rerio embryo at approx. 50% epiboly	Danio rerio embryo at approx. 50% epiboly	S03 RID0445	strain:ABTL\|dev stage:55% epiboly\|sex:not applicable\|tissue:whole embryo\|BioSampleModel:Model organism or animal	S03	S03 RID0445	S03 RID0445	Bar coded small RNA sequencing libraries were generated using the Ion Total RNA Seq Kit v2 and the Ion Xpress RNA Seq bar coding kit Thermo Fisher Scientific. Size distribution and yield of the resulting barcoded libraries were assessed using the 2200 TapeStation System with Agilent D1K ScreenTapes Agilent Technologies. Libraries were prepared for sequencing on the Ion Chef System Thermo Fisher Scientific. Sequencing was performed on an Ion Proton System using Ion PI v3 chips Thermo Fisher Scientific.	miRNA-Seq	TRANSCRIPTOMIC	cDNA	SINGLE	ION_TORRENT	Ion Torrent Proton	SRP092030	IonXpressRNA_003_rawlib.basecaller.bam	bam	60356442.0	2057592.0	IonXpressRNA 003 rawlib.basecaller.bam	0:29.33	A:17060096;C:13661341;G:13721228;T:15913777;N:0	29		17060096	13661341	13721228	15913777	0	SRX2267728	SRS1758932	SRA486759	UNIVERSITY OF AMSTERDAM, SILS\|RB&AB	UNIVERSITY OF AMSTERDAM, SILS	1	0.73029	0.49935	0.8225	0.56029	30	B	usable mapping rate	ion_torrent	ion_torrent	unknown	small_rna	unknown	bulk	unknown	unknown	Netherlands	2017-11-01	Gastrula	Embryo	Whole Organism	All anatomical structures
41464	41464	SRR4449271	SRX2267727	SRS1758931	SRP092030	PRJNA350377	Zebrafish Danio Rerio small RNA seq at approx. 50% epiboly	PRJNA350377	Transcriptome Analysis	Small RNAseq experiment of individual embryos from the 8 different spawns taken at gastrulation at approximately 50% epiboly	Danio rerio embryo at approx. 50% epiboly	Danio rerio embryo at approx. 50% epiboly	S04 RID0445	strain:ABTL\|dev stage:54% epiboly\|sex:not applicable\|tissue:whole embryo\|BioSampleModel:Model organism or animal	S04	S04 RID0445	S04 RID0445	Bar coded small RNA sequencing libraries were generated using the Ion Total RNA Seq Kit v2 and the Ion Xpress RNA Seq bar coding kit Thermo Fisher Scientific. Size distribution and yield of the resulting barcoded libraries were assessed using the 2200 TapeStation System with Agilent D1K ScreenTapes Agilent Technologies. Libraries were prepared for sequencing on the Ion Chef System Thermo Fisher Scientific. Sequencing was performed on an Ion Proton System using Ion PI v3 chips Thermo Fisher Scientific.	miRNA-Seq	TRANSCRIPTOMIC	cDNA	SINGLE	ION_TORRENT	Ion Torrent Proton	SRP092030	IonXpressRNA_004_rawlib.basecaller.bam	bam	55705225.0	2055064.0	IonXpressRNA 004 rawlib.basecaller.bam	0:27.11	A:15806355;C:12308008;G:12579212;T:15011650;N:0	27		15806355	12308008	12579212	15011650	0	SRX2267727	SRS1758931	SRA486759	UNIVERSITY OF AMSTERDAM, SILS\|RB&AB	UNIVERSITY OF AMSTERDAM, SILS	1	0.70796	0.49815	0.81444	0.54452	41	B	usable mapping rate	ion_torrent	ion_torrent	unknown	small_rna	unknown	bulk	unknown	unknown	Netherlands	2017-11-01	Gastrula	Embryo	Whole Organism	All anatomical structures
41465	41465	SRR4449270	SRX2267726	SRS1758930	SRP092030	PRJNA350377	Zebrafish Danio Rerio small RNA seq at approx. 50% epiboly	PRJNA350377	Transcriptome Analysis	Small RNAseq experiment of individual embryos from the 8 different spawns taken at gastrulation at approximately 50% epiboly	Danio rerio embryo at approx. 50% epiboly	Danio rerio embryo at approx. 50% epiboly	S01 RID0445	strain:ABTL\|dev stage:50% epiboly\|sex:not applicable\|tissue:whole embryo\|BioSampleModel:Model organism or animal	S01	S01 RID0445	S01 RID0445	Bar coded small RNA sequencing libraries were generated using the Ion Total RNA Seq Kit v2 and the Ion Xpress RNA Seq bar coding kit Thermo Fisher Scientific. Size distribution and yield of the resulting barcoded libraries were assessed using the 2200 TapeStation System with Agilent D1K ScreenTapes Agilent Technologies. Libraries were prepared for sequencing on the Ion Chef System Thermo Fisher Scientific. Sequencing was performed on an Ion Proton System using Ion PI v3 chips Thermo Fisher Scientific.	miRNA-Seq	TRANSCRIPTOMIC	cDNA	SINGLE	ION_TORRENT	Ion Torrent Proton	SRP092030	IonXpressRNA_001_rawlib.basecaller.bam	bam	35407241.0	1342552.0	IonXpressRNA 001 rawlib.basecaller.bam	0:26.37	A:9988109;C:7841340;G:8187069;T:9390723;N:0	26		9988109	7841340	8187069	9390723	0	SRX2267726	SRS1758930	SRA486759	UNIVERSITY OF AMSTERDAM, SILS\|RB&AB	UNIVERSITY OF AMSTERDAM, SILS	1	0.63621	0.43661	0.80992	0.53899	31	B	usable mapping rate	ion_torrent	ion_torrent	unknown	small_rna	unknown	bulk	unknown	unknown	Netherlands	2017-11-01	Gastrula	Embryo	Whole Organism	All anatomical structures
41466	41466	SRR4449269	SRX2267725	SRS1758928	SRP092030	PRJNA350377	Zebrafish Danio Rerio small RNA seq at approx. 50% epiboly	PRJNA350377	Transcriptome Analysis	Small RNAseq experiment of individual embryos from the 8 different spawns taken at gastrulation at approximately 50% epiboly	Danio rerio embryo at approx. 50% epiboly	Danio rerio embryo at approx. 50% epiboly	S02 RID0445	strain:ABTL\|dev stage:55% epiboly\|sex:not applicable\|tissue:whole embryo\|BioSampleModel:Model organism or animal	S02	S02 RID0445	S02 RID0445	Bar coded small RNA sequencing libraries were generated using the Ion Total RNA Seq Kit v2 and the Ion Xpress RNA Seq bar coding kit Thermo Fisher Scientific. Size distribution and yield of the resulting barcoded libraries were assessed using the 2200 TapeStation System with Agilent D1K ScreenTapes Agilent Technologies. Libraries were prepared for sequencing on the Ion Chef System Thermo Fisher Scientific. Sequencing was performed on an Ion Proton System using Ion PI v3 chips Thermo Fisher Scientific.	miRNA-Seq	TRANSCRIPTOMIC	cDNA	SINGLE	ION_TORRENT	Ion Torrent Proton	SRP092030	IonXpressRNA_002_rawlib.basecaller.bam	bam	40875445.0	1512601.0	IonXpressRNA 002 rawlib.basecaller.bam	0:27.02	A:11593378;C:9124451;G:9444184;T:10713432;N:0	27		11593378	9124451	9444184	10713432	0	SRX2267725	SRS1758928	SRA486759	UNIVERSITY OF AMSTERDAM, SILS\|RB&AB	UNIVERSITY OF AMSTERDAM, SILS	1	0.66621	0.45417	0.8127	0.55033	21	B	usable mapping rate	ion_torrent	ion_torrent	unknown	small_rna	unknown	bulk	unknown	unknown	Netherlands	2017-11-01	Gastrula	Embryo	Whole Organism	All anatomical structures
41467	41467	SRR4449267	SRX2267724	SRS1758927	SRP092030	PRJNA350377	Zebrafish Danio Rerio small RNA seq at approx. 50% epiboly	PRJNA350377	Transcriptome Analysis	Small RNAseq experiment of individual embryos from the 8 different spawns taken at gastrulation at approximately 50% epiboly	Danio rerio embryo at approx. 50% epiboly	Danio rerio embryo at approx. 50% epiboly	S15 RID0445	strain:ABTL\|dev stage:52% epiboly\|sex:not applicable\|tissue:whole embryo\|BioSampleModel:Model organism or animal	S15	S15 RID0445	S15 RID0445	Bar coded small RNA sequencing libraries were generated using the Ion Total RNA Seq Kit v2 and the Ion Xpress RNA Seq bar coding kit Thermo Fisher Scientific. Size distribution and yield of the resulting barcoded libraries were assessed using the 2200 TapeStation System with Agilent D1K ScreenTapes Agilent Technologies. Libraries were prepared for sequencing on the Ion Chef System Thermo Fisher Scientific. Sequencing was performed on an Ion Proton System using Ion PI v3 chips Thermo Fisher Scientific.	miRNA-Seq	TRANSCRIPTOMIC	cDNA	SINGLE	ION_TORRENT	Ion Torrent Proton	SRP092030	IonXpressRNA_015_rawlib.basecaller.bam	bam	58421266.0	2091074.0	IonXpressRNA 015 rawlib.basecaller.bam	0:27.94	A:16715618;C:13019609;G:13014639;T:15671400;N:0	27		16715618	13019609	13014639	15671400	0	SRX2267724	SRS1758927	SRA486759	UNIVERSITY OF AMSTERDAM, SILS\|RB&AB	UNIVERSITY OF AMSTERDAM, SILS	1	0.71786	0.51457	0.83863	0.53442	29	B	usable mapping rate	ion_torrent	ion_torrent	unknown	small_rna	unknown	bulk	unknown	unknown	Netherlands	2017-11-01	Gastrula	Embryo	Whole Organism	All anatomical structures
41468	41468	SRR4449266	SRX2267723	SRS1758929	SRP092030	PRJNA350377	Zebrafish Danio Rerio small RNA seq at approx. 50% epiboly	PRJNA350377	Transcriptome Analysis	Small RNAseq experiment of individual embryos from the 8 different spawns taken at gastrulation at approximately 50% epiboly	Danio rerio embryo at approx. 50% epiboly	Danio rerio embryo at approx. 50% epiboly	S16 RID0445	strain:ABTL\|dev stage:54% epiboly\|sex:not applicable\|tissue:whole embryo\|BioSampleModel:Model organism or animal	S16	S16 RID0445	S16 RID0445	Bar coded small RNA sequencing libraries were generated using the Ion Total RNA Seq Kit v2 and the Ion Xpress RNA Seq bar coding kit Thermo Fisher Scientific. Size distribution and yield of the resulting barcoded libraries were assessed using the 2200 TapeStation System with Agilent D1K ScreenTapes Agilent Technologies. Libraries were prepared for sequencing on the Ion Chef System Thermo Fisher Scientific. Sequencing was performed on an Ion Proton System using Ion PI v3 chips Thermo Fisher Scientific.	miRNA-Seq	TRANSCRIPTOMIC	cDNA	SINGLE	ION_TORRENT	Ion Torrent Proton	SRP092030	IonXpressRNA_016_rawlib.basecaller.bam	bam	55022551.0	2073507.0	IonXpressRNA 016 rawlib.basecaller.bam	0:26.54	A:15319738;C:12288588;G:12653066;T:14761159;N:0	26		15319738	12288588	12653066	14761159	0	SRX2267723	SRS1758929	SRA486759	UNIVERSITY OF AMSTERDAM, SILS\|RB&AB	UNIVERSITY OF AMSTERDAM, SILS	1	0.68905	0.46941	0.80306	0.55981	26	B	usable mapping rate	ion_torrent	ion_torrent	unknown	small_rna	unknown	bulk	unknown	unknown	Netherlands	2017-11-01	Gastrula	Embryo	Whole Organism	All anatomical structures
41469	41469	SRR4449265	SRX2267722	SRS1758926	SRP092030	PRJNA350377	Zebrafish Danio Rerio small RNA seq at approx. 50% epiboly	PRJNA350377	Transcriptome Analysis	Small RNAseq experiment of individual embryos from the 8 different spawns taken at gastrulation at approximately 50% epiboly	Danio rerio embryo at approx. 50% epiboly	Danio rerio embryo at approx. 50% epiboly	S13 RID0445	strain:ABTL\|dev stage:55% epiboly\|sex:not applicable\|tissue:whole embryo\|BioSampleModel:Model organism or animal	S13	S13 RID0445	S13 RID0445	Bar coded small RNA sequencing libraries were generated using the Ion Total RNA Seq Kit v2 and the Ion Xpress RNA Seq bar coding kit Thermo Fisher Scientific. Size distribution and yield of the resulting barcoded libraries were assessed using the 2200 TapeStation System with Agilent D1K ScreenTapes Agilent Technologies. Libraries were prepared for sequencing on the Ion Chef System Thermo Fisher Scientific. Sequencing was performed on an Ion Proton System using Ion PI v3 chips Thermo Fisher Scientific.	miRNA-Seq	TRANSCRIPTOMIC	cDNA	SINGLE	ION_TORRENT	Ion Torrent Proton	SRP092030	IonXpressRNA_013_rawlib.basecaller.bam	bam	49641484.0	2028008.0	IonXpressRNA 013 rawlib.basecaller.bam	0:24.48	A:13840820;C:11016762;G:11715475;T:13068427;N:0	24		13840820	11016762	11715475	13068427	0	SRX2267722	SRS1758926	SRA486759	UNIVERSITY OF AMSTERDAM, SILS\|RB&AB	UNIVERSITY OF AMSTERDAM, SILS	1	0.55355	0.3659	0.81576	0.55987	22	B	usable mapping rate	ion_torrent	ion_torrent	unknown	small_rna	unknown	bulk	unknown	unknown	Netherlands	2017-11-01	Gastrula	Embryo	Whole Organism	All anatomical structures
41470	41470	SRR4449264	SRX2267721	SRS1758925	SRP092030	PRJNA350377	Zebrafish Danio Rerio small RNA seq at approx. 50% epiboly	PRJNA350377	Transcriptome Analysis	Small RNAseq experiment of individual embryos from the 8 different spawns taken at gastrulation at approximately 50% epiboly	Danio rerio embryo at approx. 50% epiboly	Danio rerio embryo at approx. 50% epiboly	S14 RID0445	strain:ABTL\|dev stage:56% epiboly\|sex:not applicable\|tissue:whole embryo\|BioSampleModel:Model organism or animal	S14	S14 RID0445	S14 RID0445	Bar coded small RNA sequencing libraries were generated using the Ion Total RNA Seq Kit v2 and the Ion Xpress RNA Seq bar coding kit Thermo Fisher Scientific. Size distribution and yield of the resulting barcoded libraries were assessed using the 2200 TapeStation System with Agilent D1K ScreenTapes Agilent Technologies. Libraries were prepared for sequencing on the Ion Chef System Thermo Fisher Scientific. Sequencing was performed on an Ion Proton System using Ion PI v3 chips Thermo Fisher Scientific.	miRNA-Seq	TRANSCRIPTOMIC	cDNA	SINGLE	ION_TORRENT	Ion Torrent Proton	SRP092030	IonXpressRNA_014_rawlib.basecaller.bam	bam	52969826.0	2019609.0	IonXpressRNA 014 rawlib.basecaller.bam	0:26.23	A:14762618;C:11847782;G:12164393;T:14195033;N:0	26		14762618	11847782	12164393	14195033	0	SRX2267721	SRS1758925	SRA486759	UNIVERSITY OF AMSTERDAM, SILS\|RB&AB	UNIVERSITY OF AMSTERDAM, SILS	1	0.65926	0.45113	0.80515	0.56221	22	B	usable mapping rate	ion_torrent	ion_torrent	unknown	small_rna	unknown	bulk	unknown	unknown	Netherlands	2017-11-01	Gastrula	Embryo	Whole Organism	All anatomical structures
41471	41471	SRR4449263	SRX2267720	SRS1758923	SRP092030	PRJNA350377	Zebrafish Danio Rerio small RNA seq at approx. 50% epiboly	PRJNA350377	Transcriptome Analysis	Small RNAseq experiment of individual embryos from the 8 different spawns taken at gastrulation at approximately 50% epiboly	Danio rerio embryo at approx. 50% epiboly	Danio rerio embryo at approx. 50% epiboly	S11 RID0445	strain:ABTL\|dev stage:56% epiboly\|sex:not applicable\|tissue:whole embryo\|BioSampleModel:Model organism or animal	S11	S11 RID0445	S11 RID0445	Bar coded small RNA sequencing libraries were generated using the Ion Total RNA Seq Kit v2 and the Ion Xpress RNA Seq bar coding kit Thermo Fisher Scientific. Size distribution and yield of the resulting barcoded libraries were assessed using the 2200 TapeStation System with Agilent D1K ScreenTapes Agilent Technologies. Libraries were prepared for sequencing on the Ion Chef System Thermo Fisher Scientific. Sequencing was performed on an Ion Proton System using Ion PI v3 chips Thermo Fisher Scientific.	miRNA-Seq	TRANSCRIPTOMIC	cDNA	SINGLE	ION_TORRENT	Ion Torrent Proton	SRP092030	IonXpressRNA_011_rawlib.basecaller.bam	bam	54877334.0	2122171.0	IonXpressRNA 011 rawlib.basecaller.bam	0:25.86	A:14884144;C:12539815;G:13173981;T:14279394;N:0	25		14884144	12539815	13173981	14279394	0	SRX2267720	SRS1758923	SRA486759	UNIVERSITY OF AMSTERDAM, SILS\|RB&AB	UNIVERSITY OF AMSTERDAM, SILS	1	0.62581	0.40704	0.82002	0.59605	20	B	usable mapping rate	ion_torrent	ion_torrent	unknown	small_rna	unknown	bulk	unknown	unknown	Netherlands	2017-11-01	Gastrula	Embryo	Whole Organism	All anatomical structures
41472	41472	SRR4449262	SRX2267719	SRS1758924	SRP092030	PRJNA350377	Zebrafish Danio Rerio small RNA seq at approx. 50% epiboly	PRJNA350377	Transcriptome Analysis	Small RNAseq experiment of individual embryos from the 8 different spawns taken at gastrulation at approximately 50% epiboly	Danio rerio embryo at approx. 50% epiboly	Danio rerio embryo at approx. 50% epiboly	S12 RID0445	strain:ABTL\|dev stage:53% epiboly\|sex:not applicable\|tissue:whole embryo\|BioSampleModel:Model organism or animal	S12	S12 RID0445	S12 RID0445	Bar coded small RNA sequencing libraries were generated using the Ion Total RNA Seq Kit v2 and the Ion Xpress RNA Seq bar coding kit Thermo Fisher Scientific. Size distribution and yield of the resulting barcoded libraries were assessed using the 2200 TapeStation System with Agilent D1K ScreenTapes Agilent Technologies. Libraries were prepared for sequencing on the Ion Chef System Thermo Fisher Scientific. Sequencing was performed on an Ion Proton System using Ion PI v3 chips Thermo Fisher Scientific.	miRNA-Seq	TRANSCRIPTOMIC	cDNA	SINGLE	ION_TORRENT	Ion Torrent Proton	SRP092030	IonXpressRNA_012_rawlib.basecaller.bam	bam	51987914.0	1937451.0	IonXpressRNA 012 rawlib.basecaller.bam	0:26.83	A:14499922;C:11778716;G:11957347;T:13751929;N:0	26		14499922	11778716	11957347	13751929	0	SRX2267719	SRS1758924	SRA486759	UNIVERSITY OF AMSTERDAM, SILS\|RB&AB	UNIVERSITY OF AMSTERDAM, SILS	1	0.67286	0.44698	0.80919	0.58291	29	B	usable mapping rate	ion_torrent	ion_torrent	unknown	small_rna	unknown	bulk	unknown	unknown	Netherlands	2017-11-01	Gastrula	Embryo	Whole Organism	All anatomical structures
63794	63794	SRR14066768	SRX10441285	SRS8573413	SRP312051	PRJNA716861	Zebrafish Bdnf CRISPR/CAS9 knock out	PRJNA716861	Other	RNA seq of WT and Bdnf CRISPR/CAS9 KO of 24 hpf and 48 hpf zebrafish			SD 10	strain:AB\|isolate:WT24 small2\|age:24 hpf stage:Long pec\|sex:pooled male and female\|tissue:pool of 50 individuals\|BioSampleModel:Model organism or animal	RNAseq of Danio rerio Bdnf mutant	Bdnf Libr10	Bdnf Libr10	Indexed libraries were prepared from 1 g/ea purified RNA with TruSeq SmallRNA Sample Prep Kit Illumina and TruSeq Stranded Total RNA Library Prep Kit Illumina. Libraries were quantified using the Agilent 2100 Bioanalyzer and pooled such that each index tagged sample was present in equimolar amounts with final concentration of the pooled samples of 2 nM. The pooled samples were subject to cluster generation and sequencing using an Illumina HiSeq 2500 System Illumina in a 1x50 single read SmallRNA and 2x100 paired end RNA Seq format at a final concentration of 10 pmol.	miRNA-Seq	TRANSCRIPTOMIC	cDNA	SINGLE	ILLUMINA	Illumina HiSeq 2500	SRP312051	WT24_small2_R1_001.fastq.gz	fastq	1328140584.0	17475534.0	WT24 small2 R1 001.fastq.gz	0:76 1:0	A:412652031;C:328228938;G:257910677;T:329318258;N:30680	76	0	412652031	328228938	257910677	329318258	30680	SRX10441285	SRS8573413	SRA1209895	Stazione Zoologica Anton Dohrn\|Biology and Evolution of Marine Organisms	Stazione Zoologica Anton Dohrn	1	0.00121	0.00038	0.99918	0.74603	76	T	under 1.2% mapping rate	illumina	hiseq_era	unknown	small_rna	trueseq	bulk	bulk	bulk	Italy	2021-03-25	Multi-stage	Embryo	Whole Organism	All anatomical structures
63795	63795	SRR14066769	SRX10441284	SRS8573412	SRP312051	PRJNA716861	Zebrafish Bdnf CRISPR/CAS9 knock out	PRJNA716861	Other	RNA seq of WT and Bdnf CRISPR/CAS9 KO of 24 hpf and 48 hpf zebrafish			SD 9	strain:AB\|isolate:WT24 small1\|age:24 hpf stage:Long pec\|sex:pooled male and female\|tissue:pool of 50 individuals\|BioSampleModel:Model organism or animal	RNAseq of Danio rerio Bdnf mutant	Bdnf Libr9	Bdnf Libr9	Indexed libraries were prepared from 1 g/ea purified RNA with TruSeq SmallRNA Sample Prep Kit Illumina and TruSeq Stranded Total RNA Library Prep Kit Illumina. Libraries were quantified using the Agilent 2100 Bioanalyzer and pooled such that each index tagged sample was present in equimolar amounts with final concentration of the pooled samples of 2 nM. The pooled samples were subject to cluster generation and sequencing using an Illumina HiSeq 2500 System Illumina in a 1x50 single read SmallRNA and 2x100 paired end RNA Seq format at a final concentration of 10 pmol.	miRNA-Seq	TRANSCRIPTOMIC	cDNA	SINGLE	ILLUMINA	Illumina HiSeq 2500	SRP312051	WT24_small1_R1_001.fastq.gz	fastq	1219490832.0	16045932.0	WT24 small1 R1 001.fastq.gz	0:76 1:0	A:351083382;C:291591654;G:283111351;T:293679894;N:24551	76	0	351083382	291591654	283111351	293679894	24551	SRX10441284	SRS8573412	SRA1209895	Stazione Zoologica Anton Dohrn\|Biology and Evolution of Marine Organisms	Stazione Zoologica Anton Dohrn	1	0.00842	0.00219	0.99786	0.61991	76	T	under 1.2% mapping rate	illumina	hiseq_era	unknown	small_rna	trueseq	bulk	bulk	bulk	Italy	2021-03-25	Multi-stage	Embryo	Whole Organism	All anatomical structures
63802	63802	SRR14066779	SRX10441277	SRS8573405	SRP312051	PRJNA716861	Zebrafish Bdnf CRISPR/CAS9 knock out	PRJNA716861	Other	RNA seq of WT and Bdnf CRISPR/CAS9 KO of 24 hpf and 48 hpf zebrafish			SD 16	strain:AB\|isolate:MUT48 small4\|age:48 hpf stage:Long pec\|sex:pooled male and female\|tissue:pool of 50 individuals\|BioSampleModel:Model organism or animal	RNAseq of Danio rerio Bdnf mutant	Bdnf Libr16	Bdnf Libr16	Indexed libraries were prepared from 1 g/ea purified RNA with TruSeq SmallRNA Sample Prep Kit Illumina and TruSeq Stranded Total RNA Library Prep Kit Illumina. Libraries were quantified using the Agilent 2100 Bioanalyzer and pooled such that each index tagged sample was present in equimolar amounts with final concentration of the pooled samples of 2 nM. The pooled samples were subject to cluster generation and sequencing using an Illumina HiSeq 2500 System Illumina in a 1x50 single read SmallRNA and 2x100 paired end RNA Seq format at a final concentration of 10 pmol.	miRNA-Seq	TRANSCRIPTOMIC	cDNA	SINGLE	ILLUMINA	Illumina HiSeq 2500	SRP312051	MUT48_small4_R1_001.fastq.gz	fastq	1346335212.0	17714937.0	MUT48 small4 R1 001.fastq.gz	0:76 1:0	A:416374120;C:317460666;G:293419951;T:319049435;N:31040	76	0	416374120	317460666	293419951	319049435	31040	SRX10441277	SRS8573405	SRA1209895	Stazione Zoologica Anton Dohrn\|Biology and Evolution of Marine Organisms	Stazione Zoologica Anton Dohrn	1	0.00179	0.00093	0.99935	0.5625	76	T	under 1.2% mapping rate	illumina	hiseq_era	unknown	small_rna	trueseq	bulk	bulk	bulk	Italy	2021-03-25	Hatching	Embryo	Whole Organism	All anatomical structures
63803	63803	SRR14066776	SRX10441276	SRS8573404	SRP312051	PRJNA716861	Zebrafish Bdnf CRISPR/CAS9 knock out	PRJNA716861	Other	RNA seq of WT and Bdnf CRISPR/CAS9 KO of 24 hpf and 48 hpf zebrafish			SD 15	strain:AB\|isolate:MUT48 small3\|age:48 hpf stage:Long pec\|sex:pooled male and female\|tissue:pool of 50 individuals\|BioSampleModel:Model organism or animal	RNAseq of Danio rerio Bdnf mutant	Bdnf Libr15	Bdnf Libr15	Indexed libraries were prepared from 1 g/ea purified RNA with TruSeq SmallRNA Sample Prep Kit Illumina and TruSeq Stranded Total RNA Library Prep Kit Illumina. Libraries were quantified using the Agilent 2100 Bioanalyzer and pooled such that each index tagged sample was present in equimolar amounts with final concentration of the pooled samples of 2 nM. The pooled samples were subject to cluster generation and sequencing using an Illumina HiSeq 2500 System Illumina in a 1x50 single read SmallRNA and 2x100 paired end RNA Seq format at a final concentration of 10 pmol.	miRNA-Seq	TRANSCRIPTOMIC	cDNA	SINGLE	ILLUMINA	Illumina HiSeq 2500	SRP312051	MUT48_small3_R1_001.fastq.gz	fastq	1304806760.0	17168510.0	MUT48 small3 R1 001.fastq.gz	0:76 1:0	A:387991384;C:335175146;G:279195316;T:302418185;N:26729	76	0	387991384	335175146	279195316	302418185	26729	SRX10441276	SRS8573404	SRA1209895	Stazione Zoologica Anton Dohrn\|Biology and Evolution of Marine Organisms	Stazione Zoologica Anton Dohrn	1	0.00621	0.00334	0.99926	0.64343	76	T	under 1.2% mapping rate	illumina	hiseq_era	unknown	small_rna	trueseq	bulk	bulk	bulk	Italy	2021-03-25	Hatching	Embryo	Whole Organism	All anatomical structures
63804	63804	SRR14066777	SRX10441275	SRS8573403	SRP312051	PRJNA716861	Zebrafish Bdnf CRISPR/CAS9 knock out	PRJNA716861	Other	RNA seq of WT and Bdnf CRISPR/CAS9 KO of 24 hpf and 48 hpf zebrafish			SD 14	strain:AB\|isolate:WT48 small4\|age:48 hpf stage:Long pec\|sex:pooled male and female\|tissue:pool of 50 individuals\|BioSampleModel:Model organism or animal	RNAseq of Danio rerio Bdnf mutant	Bdnf Libr14	Bdnf Libr14	Indexed libraries were prepared from 1 g/ea purified RNA with TruSeq SmallRNA Sample Prep Kit Illumina and TruSeq Stranded Total RNA Library Prep Kit Illumina. Libraries were quantified using the Agilent 2100 Bioanalyzer and pooled such that each index tagged sample was present in equimolar amounts with final concentration of the pooled samples of 2 nM. The pooled samples were subject to cluster generation and sequencing using an Illumina HiSeq 2500 System Illumina in a 1x50 single read SmallRNA and 2x100 paired end RNA Seq format at a final concentration of 10 pmol.	miRNA-Seq	TRANSCRIPTOMIC	cDNA	SINGLE	ILLUMINA	Illumina HiSeq 2500	SRP312051	WT48_small4_R1_001.fastq.gz	fastq	1339796780.0	17628905.0	WT48 small4 R1 001.fastq.gz	0:76 1:0	A:416769744;C:315222509;G:273799428;T:333973227;N:31872	76	0	416769744	315222509	273799428	333973227	31872	SRX10441275	SRS8573403	SRA1209895	Stazione Zoologica Anton Dohrn\|Biology and Evolution of Marine Organisms	Stazione Zoologica Anton Dohrn	1	0.00503	0.00127	0.99888	0.67632	76	T	under 1.2% mapping rate	illumina	hiseq_era	unknown	small_rna	trueseq	bulk	bulk	bulk	Italy	2021-03-25	Hatching	Embryo	Whole Organism	All anatomical structures
63805	63805	SRR14066778	SRX10441274	SRS8573402	SRP312051	PRJNA716861	Zebrafish Bdnf CRISPR/CAS9 knock out	PRJNA716861	Other	RNA seq of WT and Bdnf CRISPR/CAS9 KO of 24 hpf and 48 hpf zebrafish			SD 13	strain:AB\|isolate:WT48 small3\|age:48 hpf stage:Long pec\|sex:pooled male and female\|tissue:pool of 50 individuals\|BioSampleModel:Model organism or animal	RNAseq of Danio rerio Bdnf mutant	Bdnf Libr13	Bdnf Libr13	Indexed libraries were prepared from 1 g/ea purified RNA with TruSeq SmallRNA Sample Prep Kit Illumina and TruSeq Stranded Total RNA Library Prep Kit Illumina. Libraries were quantified using the Agilent 2100 Bioanalyzer and pooled such that each index tagged sample was present in equimolar amounts with final concentration of the pooled samples of 2 nM. The pooled samples were subject to cluster generation and sequencing using an Illumina HiSeq 2500 System Illumina in a 1x50 single read SmallRNA and 2x100 paired end RNA Seq format at a final concentration of 10 pmol.	miRNA-Seq	TRANSCRIPTOMIC	cDNA	SINGLE	ILLUMINA	Illumina HiSeq 2500	SRP312051	WT48_small3_R1_001.fastq.gz	fastq	1212286260.0	15951135.0	WT48 small3 R1 001.fastq.gz	0:76 1:0	A:374600889;C:299473187;G:252454435;T:285727773;N:29976	76	0	374600889	299473187	252454435	285727773	29976	SRX10441274	SRS8573402	SRA1209895	Stazione Zoologica Anton Dohrn\|Biology and Evolution of Marine Organisms	Stazione Zoologica Anton Dohrn	1	0.01297	0.00494	0.99849	0.661	76	B	usable mapping rate	illumina	hiseq_era	unknown	small_rna	trueseq	bulk	bulk	bulk	Italy	2021-03-25	Hatching	Embryo	Whole Organism	All anatomical structures
63806	63806	SRR14066780	SRX10441273	SRS8573401	SRP312051	PRJNA716861	Zebrafish Bdnf CRISPR/CAS9 knock out	PRJNA716861	Other	RNA seq of WT and Bdnf CRISPR/CAS9 KO of 24 hpf and 48 hpf zebrafish			SD 12	strain:AB\|isolate:MUT24 small2\|age:24 hpf stage:Long pec\|sex:pooled male and female\|tissue:pool of 50 individuals\|BioSampleModel:Model organism or animal	RNAseq of Danio rerio Bdnf mutant	Bdnf Libr12	Bdnf Libr12	Indexed libraries were prepared from 1 g/ea purified RNA with TruSeq SmallRNA Sample Prep Kit Illumina and TruSeq Stranded Total RNA Library Prep Kit Illumina. Libraries were quantified using the Agilent 2100 Bioanalyzer and pooled such that each index tagged sample was present in equimolar amounts with final concentration of the pooled samples of 2 nM. The pooled samples were subject to cluster generation and sequencing using an Illumina HiSeq 2500 System Illumina in a 1x50 single read SmallRNA and 2x100 paired end RNA Seq format at a final concentration of 10 pmol.	miRNA-Seq	TRANSCRIPTOMIC	cDNA	SINGLE	ILLUMINA	Illumina HiSeq 2500	SRP312051	MUT24_small2_R1_001.fastq.gz	fastq	1214643400.0	15982150.0	MUT24 small2 R1 001.fastq.gz	0:76 1:0	A:339563536;C:303989834;G:244843758;T:326220311;N:25961	76	0	339563536	303989834	244843758	326220311	25961	SRX10441273	SRS8573401	SRA1209895	Stazione Zoologica Anton Dohrn\|Biology and Evolution of Marine Organisms	Stazione Zoologica Anton Dohrn	1	0.00526	0.00203	0.99876	0.62659	76	T	under 1.2% mapping rate	illumina	hiseq_era	unknown	small_rna	trueseq	bulk	bulk	bulk	Italy	2021-03-25	Multi-stage	Embryo	Whole Organism	All anatomical structures
63807	63807	SRR14066781	SRX10441272	SRS8573400	SRP312051	PRJNA716861	Zebrafish Bdnf CRISPR/CAS9 knock out	PRJNA716861	Other	RNA seq of WT and Bdnf CRISPR/CAS9 KO of 24 hpf and 48 hpf zebrafish			SD 11	strain:AB\|isolate:MUT24 small1\|age:24 hpf stage:Long pec\|sex:pooled male and female\|tissue:pool of 50 individuals\|BioSampleModel:Model organism or animal	RNAseq of Danio rerio Bdnf mutant	Bdnf Libr11	Bdnf Libr11	Indexed libraries were prepared from 1 g/ea purified RNA with TruSeq SmallRNA Sample Prep Kit Illumina and TruSeq Stranded Total RNA Library Prep Kit Illumina. Libraries were quantified using the Agilent 2100 Bioanalyzer and pooled such that each index tagged sample was present in equimolar amounts with final concentration of the pooled samples of 2 nM. The pooled samples were subject to cluster generation and sequencing using an Illumina HiSeq 2500 System Illumina in a 1x50 single read SmallRNA and 2x100 paired end RNA Seq format at a final concentration of 10 pmol.	miRNA-Seq	TRANSCRIPTOMIC	cDNA	SINGLE	ILLUMINA	Illumina HiSeq 2500	SRP312051	MUT24_small1_R1_001.fastq.gz	fastq	1273652916.0	16758591.0	MUT24 small1 R1 001.fastq.gz	0:76 1:0	A:398579242;C:309782360;G:268224898;T:297035166;N:31250	76	0	398579242	309782360	268224898	297035166	31250	SRX10441272	SRS8573400	SRA1209895	Stazione Zoologica Anton Dohrn\|Biology and Evolution of Marine Organisms	Stazione Zoologica Anton Dohrn	1	0.00191	0.0006	0.9992	0.60752	76	T	under 1.2% mapping rate	illumina	hiseq_era	unknown	small_rna	trueseq	bulk	bulk	bulk	Italy	2021-03-25	Multi-stage	Embryo	Whole Organism	All anatomical structures

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;