metadata: run_metadata: 67 rows where experiment.library_selection = "RT-PCR", experiment.library_source = "TRANSCRIPTOMIC" and tissue_curation

67 rows where experiment.library_selection = "RT-PCR", experiment.library_source = "TRANSCRIPTOMIC" and tissue_curation_coarse = "Nervous System"

descending

Link	rowid ▼	run.accession	experiment.accession	sample.accession	study.accession	bioproject	study.title	study.alias	study.type	study.abstract	sample.title	sample.alias	sample.attributes	experiment.title	experiment.alias	experiment.library_name	experiment.design_description	experiment.library_strategy	experiment.library_source	experiment.library_selection	experiment.library_layout	experiment.platform	experiment.instrument_model	experiment.study_ref	run.filename	run.semantic_name	run.total_bases	run.total_spots	run.alias	run.read_lengths	run.base_counts	run.r1_length	run.r2_length	run.Acount	run.Ccount	run.Gcount	run.Tcount	run.Ncount	run.experiment	run.pool_member	submission.accession	submission.srasource	submission.bioprojectsource	seqdetective.n_mates	seqdetective.mapping_rate.mate1	seqdetective.mapping_rate.mate2	seqdetective.nofeature_rate.mate1	seqdetective.nofeature_rate.mate2	seqdetective.sparsity.mate1	seqdetective.sparsity.mate2	seqdetective.pos_strand_rate.mate1	seqdetective.pos_strand_rate.mate2	seqdetective.readlen.mate1	seqdetective.readlen.mate2	seqdetective.judgement.mate1	seqdetective.judgement.mate2	seqdetective.judgement.reason	platform_family	instrument_generation	read_bias	selection_class	prep_kit	sc_or_bulk	tech_class	technology	submission.bioprojectsource.country	earliest_date	devstage_curation	devstage_curation_coarse	tissue_curation	tissue_curation_coarse
34100	34100	SRR31179089	SRX26561802	SRS23067260	SRP542312	PRJNA1180208	RNA Sequencing of NPs in zebrafish brain	PRJNA1180208	Other		L21	L1EIC0700904 T L2.R1	strain:AB\|age:Adult\|collection date:not applicable\|geo loc name:Hong Kong\|sex:not applicable\|tissue:Brain\|Tmp:9\|BioSampleModel:Model organism or animal	RNA Seq of zebrafish brain	L21	L21	Adult zebrafish brain	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	PAIRED	ILLUMINA	Illumina HiSeq 3000	SRP542312	L1EIC0700904-T_L2.R1.raw.fastq.gz L1EIC0700904-T_L2.R2.raw.fastq.gz	fastq fastq	6755197306.0	22368203.0	L1EIC0700904 T L2.R1.raw.fastq.gz	0:151 1:151	A:1778527472;C:1586407415;G:1611223994;T:1770639781;N:8398644	151	151	1778527472	1586407415	1611223994	1770639781	8398644	SRX26561802	SRS23067260	SRA2001903	City University of Hong Kong\|School of Energy and Environmental	City University of Hong Kong												B	B	biological fallback assumption	illumina	hiseq_era	unknown	other	unknown	bulk	unknown	unknown	China	2024-10-31	Adult	Adult	Brain	Nervous System
34101	34101	SRR31179090	SRX26561801	SRS23067261	SRP542312	PRJNA1180208	RNA Sequencing of NPs in zebrafish brain	PRJNA1180208	Other		L11	L1EIC0700903 T L1.R1	strain:AB\|age:Adult\|collection date:not applicable\|geo loc name:Hong Kong\|sex:not applicable\|tissue:Brain\|Tmp:7\|BioSampleModel:Model organism or animal	RNA Seq of zebrafish brain	L11	L11	Adult zebrafish brain	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	PAIRED	ILLUMINA	Illumina HiSeq 3000	SRP542312	L1EIC0700903-T_L1.R1.raw.fastq.gz L1EIC0700903-T_L1.R2.raw.fastq.gz	fastq fastq	7262619518.0	24048409.0	L1EIC0700903 T L1.R1.raw.fastq.gz	0:151 1:151	A:1897564712;C:1719515913;G:1744510723;T:1891980402;N:9047768	151	151	1897564712	1719515913	1744510723	1891980402	9047768	SRX26561801	SRS23067261	SRA2001903	City University of Hong Kong\|School of Energy and Environmental	City University of Hong Kong												B	B	biological fallback assumption	illumina	hiseq_era	unknown	other	unknown	bulk	unknown	unknown	China	2024-10-31	Adult	Adult	Brain	Nervous System
34102	34102	SRR31179091	SRX26561800	SRS23067257	SRP542312	PRJNA1180208	RNA Sequencing of NPs in zebrafish brain	PRJNA1180208	Other		C31	L1EIC0700902 T C3.R1	strain:AB\|age:Adult\|collection date:not applicable\|geo loc name:Hong Kong\|sex:not applicable\|tissue:Brain\|Tmp:5\|BioSampleModel:Model organism or animal	RNA Seq of zebrafish brain	C31	C31	Adult zebrafish brain	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	PAIRED	ILLUMINA	Illumina HiSeq 3000	SRP542312	L1EIC0700902-T_C3.R1.raw.fastq.gz L1EIC0700902-T_C3.R2.raw.fastq.gz	fastq fastq	6986250560.0	23133280.0	L1EIC0700902 T C3.R1.raw.fastq.gz	0:151 1:151	A:1814714141;C:1667167814;G:1686637674;T:1809014055;N:8716876	151	151	1814714141	1667167814	1686637674	1809014055	8716876	SRX26561800	SRS23067257	SRA2001903	City University of Hong Kong\|School of Energy and Environmental	City University of Hong Kong												B	B	biological fallback assumption	illumina	hiseq_era	unknown	other	unknown	bulk	unknown	unknown	China	2024-10-31	Adult	Adult	Brain	Nervous System
34103	34103	SRR31179092	SRX26561799	SRS23067259	SRP542312	PRJNA1180208	RNA Sequencing of NPs in zebrafish brain	PRJNA1180208	Other		C21	L1EIC0700901 T C2.R1	strain:AB\|age:Adult\|collection date:not applicable\|geo loc name:Hong Kong\|sex:not applicable\|tissue:Brain\|Tmp:3\|BioSampleModel:Model organism or animal	RNA Seq of zebrafish brain	C21	C21	Adult zebrafish brain	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	PAIRED	ILLUMINA	Illumina HiSeq 3000	SRP542312	L1EIC0700901-T_C2.R1.raw.fastq.gz L1EIC0700901-T_C2.R2.raw.fastq.gz	fastq fastq	7084353146.0	23458123.0	L1EIC0700901 T C2.R1.raw.fastq.gz	0:151 1:151	A:1860686893;C:1670094870;G:1691858523;T:1852823738;N:8889122	151	151	1860686893	1670094870	1691858523	1852823738	8889122	SRX26561799	SRS23067259	SRA2001903	City University of Hong Kong\|School of Energy and Environmental	City University of Hong Kong												B	B	biological fallback assumption	illumina	hiseq_era	unknown	other	unknown	bulk	unknown	unknown	China	2024-10-31	Adult	Adult	Brain	Nervous System
34104	34104	SRR31179093	SRX26561798	SRS23067255	SRP542312	PRJNA1180208	RNA Sequencing of NPs in zebrafish brain	PRJNA1180208	Other		S31	L1EIC0700908 T S3.R1	strain:AB\|age:Adult\|collection date:not applicable\|geo loc name:Hong Kong\|sex:not applicable\|tissue:Brain\|Tmp:17\|BioSampleModel:Model organism or animal	RNA Seq of zebrafish brain	S31	S31	Adult zebrafish brain	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	PAIRED	ILLUMINA	Illumina HiSeq 3000	SRP542312	L1EIC0700908-T_S3.R1.raw.fastq.gz L1EIC0700908-T_S3.R2.raw.fastq.gz	fastq fastq	6992611888.0	23154344.0	L1EIC0700908 T S3.R1.raw.fastq.gz	0:151 1:151	A:1891265867;C:1594515809;G:1615494569;T:1882648469;N:8687174	151	151	1891265867	1594515809	1615494569	1882648469	8687174	SRX26561798	SRS23067255	SRA2001903	City University of Hong Kong\|School of Energy and Environmental	City University of Hong Kong												B	B	biological fallback assumption	illumina	hiseq_era	unknown	other	unknown	bulk	unknown	unknown	China	2024-10-31	Adult	Adult	Brain	Nervous System
34105	34105	SRR31179094	SRX26561797	SRS23067258	SRP542312	PRJNA1180208	RNA Sequencing of NPs in zebrafish brain	PRJNA1180208	Other		S21	L1EIC0700907 T S2.R1	strain:AB\|age:Adult\|collection date:not applicable\|geo loc name:Hong Kong\|sex:not applicable\|tissue:Brain\|Tmp:15\|BioSampleModel:Model organism or animal	RNA Seq of zebrafish brain	S21	S21	Adult zebrafish brain	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	PAIRED	ILLUMINA	Illumina HiSeq 3000	SRP542312	L1EIC0700907-T_S2.R1.raw.fastq.gz L1EIC0700907-T_S2.R2.raw.fastq.gz	fastq fastq	6223201958.0	20606629.0	L1EIC0700907 T S2.R1.raw.fastq.gz	0:151 1:151	A:1635455481;C:1467707544;G:1484789988;T:1627505187;N:7743758	151	151	1635455481	1467707544	1484789988	1627505187	7743758	SRX26561797	SRS23067258	SRA2001903	City University of Hong Kong\|School of Energy and Environmental	City University of Hong Kong												B	B	biological fallback assumption	illumina	hiseq_era	unknown	other	unknown	bulk	unknown	unknown	China	2024-10-31	Adult	Adult	Brain	Nervous System
34106	34106	SRR31179095	SRX26561796	SRS23067256	SRP542312	PRJNA1180208	RNA Sequencing of NPs in zebrafish brain	PRJNA1180208	Other		S11	L1EIC0700906 T S1.R1	strain:AB\|age:Adult\|collection date:not applicable\|geo loc name:Hong Kong\|sex:not applicable\|tissue:Brain\|Tmp:13\|BioSampleModel:Model organism or animal	RNA Seq of zebrafish brain	S11	S11	Adult zebrafish brain	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	PAIRED	ILLUMINA	Illumina HiSeq 3000	SRP542312	L1EIC0700906-T_S1.R1.raw.fastq.gz L1EIC0700906-T_S1.R2.raw.fastq.gz	fastq fastq	6882679660.0	22790330.0	L1EIC0700906 T S1.R1.raw.fastq.gz	0:151 1:151	A:1805328115;C:1625761692;G:1646060059;T:1796837143;N:8692651	151	151	1805328115	1625761692	1646060059	1796837143	8692651	SRX26561796	SRS23067256	SRA2001903	City University of Hong Kong\|School of Energy and Environmental	City University of Hong Kong												B	B	biological fallback assumption	illumina	hiseq_era	unknown	other	unknown	bulk	unknown	unknown	China	2024-10-31	Adult	Adult	Brain	Nervous System
34107	34107	SRR31179096	SRX26561795	SRS23067254	SRP542312	PRJNA1180208	RNA Sequencing of NPs in zebrafish brain	PRJNA1180208	Other		L31	L1EIC0700905 T L3.R1	strain:AB\|age:Adult\|collection date:not applicable\|geo loc name:Hong Kong\|sex:not applicable\|tissue:Brain\|Tmp:11\|BioSampleModel:Model organism or animal	RNA Seq of zebrafish brain	L31	L31	Adult zebrafish brain	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	PAIRED	ILLUMINA	Illumina HiSeq 3000	SRP542312	L1EIC0700905-T_L3.R1.raw.fastq.gz L1EIC0700905-T_L3.R2.raw.fastq.gz	fastq fastq	6901039146.0	22851123.0	L1EIC0700905 T L3.R1.raw.fastq.gz	0:151 1:151	A:1796093025;C:1641065561;G:1664159837;T:1791078184;N:8642539	151	151	1796093025	1641065561	1664159837	1791078184	8642539	SRX26561795	SRS23067254	SRA2001903	City University of Hong Kong\|School of Energy and Environmental	City University of Hong Kong												B	B	biological fallback assumption	illumina	hiseq_era	unknown	other	unknown	bulk	unknown	unknown	China	2024-10-31	Adult	Adult	Brain	Nervous System
34108	34108	SRR31179097	SRX26561794	SRS23067253	SRP542312	PRJNA1180208	RNA Sequencing of NPs in zebrafish brain	PRJNA1180208	Other		C11	L1EIC0700900 T C1.R1	strain:AB\|age:Adult\|collection date:not applicable\|geo loc name:Hong Kong\|sex:not applicable\|tissue:Brain\|Tmp:1\|BioSampleModel:Model organism or animal	RNA Seq of zebrafish brain	C11	C11	Adult zebrafish brain	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	PAIRED	ILLUMINA	Illumina HiSeq 3000	SRP542312	L1EIC0700900-T_C1.R1.raw.fastq.gz L1EIC0700900-T_C1.R2.raw.fastq.gz	fastq fastq	10565913034.0	34986467.0	L1EIC0700900 T C1.R1.raw.fastq.gz	0:151 1:151	A:2737543425;C:2523674862;G:2563177427;T:2728317948;N:13199372	151	151	2737543425	2523674862	2563177427	2728317948	13199372	SRX26561794	SRS23067253	SRA2001903	City University of Hong Kong\|School of Energy and Environmental	City University of Hong Kong												B	B	biological fallback assumption	illumina	hiseq_era	unknown	other	unknown	bulk	unknown	unknown	China	2024-10-31	Adult	Adult	Brain	Nervous System
52285	52285	SRR9077089	SRX5852368	SRS4776361	SRP198708	PRJNA543385	mRNA sequence of zebrafish head and body	PRJNA543385	Other	RNA was isolated from zebrafish head and body separately and followed with standardised Illumina sequencing	head1 mock	s1	breed:zebrafish\|dev stage:adult\|sex:NA\|tissue:head1\|BioSampleModel:Model organism or animal	head1 mock	WC TC 041	WC TC 041	TRUEseq standardised protocol	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	PAIRED	ILLUMINA	Illumina HiSeq 2000	SRP198708	WC_TC_041_S8.R1.fastq.gz WC_TC_041_S8.R2.fastq.gz	fastq fastq	5480620528.0	36056714.0	WC TC 041 S8.R1.fastq.gz	0:101 1:51	A:1456079218;C:1286879398;G:1250199115;T:1487095432;N:367365	101	51	1456079218	1286879398	1250199115	1487095432	367365	SRX5852368	SRS4776361	SRA887738	Southern University of Science and Technology\|Department of Biology	Southern University of Science and Technology	2	0.96102	0.95396	0.09057	0.09452	0.70285	0.70573	0.474	0.47396	101	51	B	B	biological fallback assumption	illumina	hiseq_era	unknown	other	trueseq	bulk	unknown	unknown	China	2019-10-08	Adult	Adult	Head	Nervous System
52286	52286	SRR9077090	SRX5852367	SRS4776360	SRP198708	PRJNA543385	mRNA sequence of zebrafish head and body	PRJNA543385	Other	RNA was isolated from zebrafish head and body separately and followed with standardised Illumina sequencing	head1 control	s2	breed:zebrafish\|dev stage:adult\|sex:NA\|tissue:head2\|BioSampleModel:Model organism or animal	head1 control	WC TC 042	WC TC 042	TRUEseq standardised protocol	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	PAIRED	ILLUMINA	Illumina HiSeq 2000	SRP198708	WC_TC_042_S9.R1.fastq.gz WC_TC_042_S9.R2.fastq.gz	fastq fastq	5011160472.0	32968161.0	WC TC 042 S9.R1.fastq.gz	0:101 1:51	A:1328768028;C:1179737412;G:1141948263;T:1360371072;N:335697	101	51	1328768028	1179737412	1141948263	1360371072	335697	SRX5852367	SRS4776360	SRA887738	Southern University of Science and Technology\|Department of Biology	Southern University of Science and Technology	2	0.96134	0.95488	0.09183	0.09597	0.70203	0.70398	0.4719	0.46265	101	51	B	B	biological fallback assumption	illumina	hiseq_era	unknown	other	trueseq	bulk	unknown	unknown	China	2019-10-08	Adult	Adult	Head	Nervous System
52287	52287	SRR9077091	SRX5852366	SRS4776359	SRP198708	PRJNA543385	mRNA sequence of zebrafish head and body	PRJNA543385	Other	RNA was isolated from zebrafish head and body separately and followed with standardised Illumina sequencing	head1 kd	s3	breed:zebrafish\|dev stage:adult\|sex:NA\|tissue:head3\|BioSampleModel:Model organism or animal	head1 kd	WC TC 043	WC TC 043	TRUEseq standardised protocol	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	PAIRED	ILLUMINA	Illumina HiSeq 2000	SRP198708	WC_TC_043_S10.R1.fastq.gz WC_TC_043_S10.R2.fastq.gz	fastq fastq	5709609744.0	37563222.0	WC TC 043 S10.R1.fastq.gz	0:101 1:51	A:1517831332;C:1339538042;G:1299421324;T:1552434811;N:384235	101	51	1517831332	1339538042	1299421324	1552434811	384235	SRX5852366	SRS4776359	SRA887738	Southern University of Science and Technology\|Department of Biology	Southern University of Science and Technology	2	0.95768	0.95177	0.10352	0.10892	0.69209	0.69556	0.4693	0.47272	101	51	B	B	biological fallback assumption	illumina	hiseq_era	unknown	other	trueseq	bulk	unknown	unknown	China	2019-10-08	Adult	Adult	Head	Nervous System
52288	52288	SRR9077092	SRX5852365	SRS4776358	SRP198708	PRJNA543385	mRNA sequence of zebrafish head and body	PRJNA543385	Other	RNA was isolated from zebrafish head and body separately and followed with standardised Illumina sequencing	head1 kd+wt	s4	breed:zebrafish\|dev stage:adult\|sex:NA\|tissue:head4\|BioSampleModel:Model organism or animal	head1 kd+wt	WC TC 044	WC TC 044	TRUEseq standardised protocol	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	PAIRED	ILLUMINA	Illumina HiSeq 2000	SRP198708	WC_TC_044_S11.R2.fastq.gz WC_TC_044_S11.R1.fastq.gz	fastq fastq	4776327920.0	31423210.0	WC TC 044 S11.R1.fastq.gz	0:101 1:51	A:1272079335;C:1117051709;G:1087240750;T:1299640784;N:315342	101	51	1272079335	1117051709	1087240750	1299640784	315342	SRX5852365	SRS4776358	SRA887738	Southern University of Science and Technology\|Department of Biology	Southern University of Science and Technology	2	0.9572	0.95024	0.10519	0.11173	0.69412	0.69621	0.47948	0.46528	101	51	B	B	biological fallback assumption	illumina	hiseq_era	unknown	other	trueseq	bulk	unknown	unknown	China	2019-05-17	Adult	Adult	Head	Nervous System
52292	52292	SRR9077096	SRX5852361	SRS4776354	SRP198708	PRJNA543385	mRNA sequence of zebrafish head and body	PRJNA543385	Other	RNA was isolated from zebrafish head and body separately and followed with standardised Illumina sequencing	head1 kd+mt	s5	breed:zebrafish\|dev stage:adult\|sex:NA\|tissue:head5\|BioSampleModel:Model organism or animal	head1 kd+mt	WC TC 045	WC TC 045	TRUEseq standardised protocol	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	PAIRED	ILLUMINA	Illumina HiSeq 2000	SRP198708	WC_TC_045_S12.R1.fastq.gz WC_TC_045_S12.R2.fastq.gz	fastq fastq	4914615696.0	32332998.0	WC TC 045 S12.R1.fastq.gz	0:101 1:51	A:1304784949;C:1154087581;G:1119502459;T:1335912697;N:328010	101	51	1304784949	1154087581	1119502459	1335912697	328010	SRX5852361	SRS4776354	SRA887738	Southern University of Science and Technology\|Department of Biology	Southern University of Science and Technology	2	0.95742	0.95094	0.10146	0.1069	0.69686	0.69978	0.47629	0.469	101	51	B	B	biological fallback assumption	illumina	hiseq_era	unknown	other	trueseq	bulk	unknown	unknown	China	2019-10-08	Adult	Adult	Head	Nervous System
58991	58991	SRR11577236	SRX8145127	SRS6507863	SRP257630	PRJNA627056	Impact of social isolation on brain transcriptome in zebrafish	PRJNA627056	Other	The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.	5 iso 5	20170222A 5dpf iso	breed:Konstanz Wildtype\|age:5 dpf\|dev stage:larva\|sex:not applicable\|tissue:brain\|biomaterial provider:Erin Schuman\|collected by:Lukas Anneser\|collection date:2017 02 22\|sample type:whole brain\|store cond:storage in trizol immediate extraction\|treatment:isolated\|replicate:5\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: larval and juvenile brain	A016	A016	RNA extraction from whole brain lysates polyA enrichment reverse transcription and amplification	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	SINGLE	ILLUMINA	NextSeq 500	SRP257630	20170222A_5dpf_iso_S10_R1_001.fastq.gz	fastq	1145417285.0	8785034.0	20170222A 5dpf iso S10 R1 001.fastq.gz	0:130.38 1:0	A:322759854;C:242145737;G:242143184;T:336959770;N:1408740	130	0	322759854	242145737	242143184	336959770	1408740	SRX8145127	SRS6507863	SRA1067479	Max Planck Institute for Brain Research\|Synaptic Plasticity	Max Planck Institute for Brain Research	1	0.93521		0.17614		0.66411		0.49656		109		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-04-21	Larval	Larval	Brain	Nervous System
58992	58992	SRR11577237	SRX8145126	SRS6507862	SRP257630	PRJNA627056	Impact of social isolation on brain transcriptome in zebrafish	PRJNA627056	Other	The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.	5 social 5	20170222A 5dpf soc	breed:Konstanz Wildtype\|age:5 dpf\|dev stage:larva\|sex:not applicable\|tissue:brain\|biomaterial provider:Erin Schuman\|collected by:Lukas Anneser\|collection date:2017 02 22\|sample type:whole brain\|store cond:storage in trizol immediate extraction\|treatment:social\|replicate:5\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: larval and juvenile brain	A015	A015	RNA extraction from whole brain lysates polyA enrichment reverse transcription and amplification	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	SINGLE	ILLUMINA	NextSeq 500	SRP257630	20170222A_5dpf_soc_S9_R1_001.fastq.gz	fastq	1951935848.0	15606984.0	20170222A 5dpf soc S9 R1 001.fastq.gz	0:125.07 1:0	A:546425279;C:412941736;G:422316572;T:568807662;N:1444599	125	0	546425279	412941736	422316572	568807662	1444599	SRX8145126	SRS6507862	SRA1067479	Max Planck Institute for Brain Research\|Synaptic Plasticity	Max Planck Institute for Brain Research	1	0.93665		0.17342		0.65971		0.50276		135		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-04-21	Larval	Larval	Brain	Nervous System
58993	58993	SRR11577238	SRX8145125	SRS6507861	SRP257630	PRJNA627056	Impact of social isolation on brain transcriptome in zebrafish	PRJNA627056	Other	The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.	5 iso 4	20170210B 5dpf iso	breed:Konstanz Wildtype\|age:5 dpf\|dev stage:larva\|sex:not applicable\|tissue:brain\|biomaterial provider:Erin Schuman\|collected by:Lukas Anneser\|collection date:2017 02 10\|sample type:whole brain\|store cond:storage in trizol immediate extraction\|treatment:isolated\|replicate:4\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: larval and juvenile brain	A014	A014	RNA extraction from whole brain lysates polyA enrichment reverse transcription and amplification	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	SINGLE	ILLUMINA	NextSeq 500	SRP257630	20170210B_5dpf_iso_S8_R1_001.fastq.gz	fastq	1438281543.0	10175957.0	20170210B 5dpf iso S8 R1 001.fastq.gz	0:141.34 1:0	A:405893769;C:302927323;G:299208098;T:428334452;N:1917901	141	0	405893769	302927323	299208098	428334452	1917901	SRX8145125	SRS6507861	SRA1067479	Max Planck Institute for Brain Research\|Synaptic Plasticity	Max Planck Institute for Brain Research	1	0.9398		0.14632		0.66225		0.50935		150		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-04-21	Larval	Larval	Brain	Nervous System
58994	58994	SRR11577239	SRX8145124	SRS6507860	SRP257630	PRJNA627056	Impact of social isolation on brain transcriptome in zebrafish	PRJNA627056	Other	The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.	5 social 4	20170210B 5dpf soc	breed:Konstanz Wildtype\|age:5 dpf\|dev stage:larva\|sex:not applicable\|tissue:brain\|biomaterial provider:Erin Schuman\|collected by:Lukas Anneser\|collection date:2017 02 10\|sample type:whole brain\|store cond:storage in trizol immediate extraction\|treatment:social\|replicate:4\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: larval and juvenile brain	A013	A013	RNA extraction from whole brain lysates polyA enrichment reverse transcription and amplification	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	SINGLE	ILLUMINA	NextSeq 500	SRP257630	20170210B_5dpf_soc_S7_R1_001.fastq.gz	fastq	2086284546.0	17392851.0	20170210B 5dpf soc S7 R1 001.fastq.gz	0:119.95 1:0	A:564323359;C:455998854;G:458642653;T:599704356;N:7615324	119	0	564323359	455998854	458642653	599704356	7615324	SRX8145124	SRS6507860	SRA1067479	Max Planck Institute for Brain Research\|Synaptic Plasticity	Max Planck Institute for Brain Research	1	0.94679		0.14294		0.66724		0.49719		151		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-04-21	Larval	Larval	Brain	Nervous System
58995	58995	SRR11577240	SRX8145123	SRS6507859	SRP257630	PRJNA627056	Impact of social isolation on brain transcriptome in zebrafish	PRJNA627056	Other	The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.	5 iso 3	20170210A 5dpf iso	breed:Konstanz Wildtype\|age:5 dpf\|dev stage:larva\|sex:not applicable\|tissue:brain\|biomaterial provider:Erin Schuman\|collected by:Lukas Anneser\|collection date:2017 02 10\|sample type:whole brain\|store cond:storage in trizol immediate extraction\|treatment:isolated\|replicate:3\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: larval and juvenile brain	A012	A012	RNA extraction from whole brain lysates polyA enrichment reverse transcription and amplification	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	SINGLE	ILLUMINA	NextSeq 500	SRP257630	20170210A_5dpf_iso_S6_R1_001.fastq.gz	fastq	1518854121.0	12280862.0	20170210A 5dpf iso S6 R1 001.fastq.gz	0:123.68 1:0	A:416560027;C:326775060;G:324773078;T:444339405;N:6406551	123	0	416560027	326775060	324773078	444339405	6406551	SRX8145123	SRS6507859	SRA1067479	Max Planck Institute for Brain Research\|Synaptic Plasticity	Max Planck Institute for Brain Research	1	0.94696		0.13785		0.65969		0.50295		93		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-04-21	Larval	Larval	Brain	Nervous System
58996	58996	SRR11577241	SRX8145122	SRS6507858	SRP257630	PRJNA627056	Impact of social isolation on brain transcriptome in zebrafish	PRJNA627056	Other	The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.	21 va 4	20170906 21dpf va	breed:Konstanz Wildtype\|age:21 dpf\|dev stage:juvenile\|sex:not applicable\|tissue:brain\|biomaterial provider:Erin Schuman\|collected by:Lukas Anneser\|collection date:2017 09 06\|sample type:whole brain\|store cond:storage in trizol immediate extraction\|treatment:visual access\|replicate:4\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: larval and juvenile brain	D712 D503	D712 D503	RNA extraction from whole brain lysates polyA enrichment reverse transcription and amplification	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	SINGLE	ILLUMINA	NextSeq 500	SRP257630	20170906_21dpf_va_S33_R1_001.fastq.gz	fastq	1661935649.0	12040839.0	20170906 21dpf va S33 R1 001.fastq.gz	0:138.02 1:0	A:512672438;C:325062238;G:324522459;T:499578935;N:99579	138	0	512672438	325062238	324522459	499578935	99579	SRX8145122	SRS6507858	SRA1067479	Max Planck Institute for Brain Research\|Synaptic Plasticity	Max Planck Institute for Brain Research	1	0.92534		0.20642		0.71415		0.50058		149		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-04-21	Multi-stage	Multi-stage	Brain	Nervous System
58997	58997	SRR11577242	SRX8145121	SRS6507857	SRP257630	PRJNA627056	Impact of social isolation on brain transcriptome in zebrafish	PRJNA627056	Other	The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.	21 social 4	20170906 21dpf soc	breed:Konstanz Wildtype\|age:21 dpf\|dev stage:juvenile\|sex:not applicable\|tissue:brain\|biomaterial provider:Erin Schuman\|collected by:Lukas Anneser\|collection date:2017 09 06\|sample type:whole brain\|store cond:storage in trizol immediate extraction\|treatment:social\|replicate:4\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: larval and juvenile brain	D712 D502	D712 D502	RNA extraction from whole brain lysates polyA enrichment reverse transcription and amplification	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	SINGLE	ILLUMINA	NextSeq 500	SRP257630	20170906_21dpf_soc_S32_R1_001.fastq.gz	fastq	1794859081.0	13268077.0	20170906 21dpf soc S32 R1 001.fastq.gz	0:135.28 1:0	A:540408588;C:359901078;G:360448696;T:532610170;N:1490549	135	0	540408588	359901078	360448696	532610170	1490549	SRX8145121	SRS6507857	SRA1067479	Max Planck Institute for Brain Research\|Synaptic Plasticity	Max Planck Institute for Brain Research	1	0.92777		0.20003		0.70836		0.49772		150		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-04-21	Multi-stage	Multi-stage	Brain	Nervous System
58998	58998	SRR11577243	SRX8145120	SRS6507856	SRP257630	PRJNA627056	Impact of social isolation on brain transcriptome in zebrafish	PRJNA627056	Other	The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.	21 iso 4	20170906 21dpf iso	breed:Konstanz Wildtype\|age:21 dpf\|dev stage:juvenile\|sex:not applicable\|tissue:brain\|biomaterial provider:Erin Schuman\|collected by:Lukas Anneser\|collection date:2017 09 06\|sample type:whole brain\|store cond:storage in trizol immediate extraction\|treatment:isolated\|replicate:4\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: larval and juvenile brain	D712 D501	D712 D501	RNA extraction from whole brain lysates polyA enrichment reverse transcription and amplification	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	SINGLE	ILLUMINA	NextSeq 500	SRP257630	20170906_21dpf_iso_S31_R1_001.fastq.gz	fastq	1873301073.0	13752080.0	20170906 21dpf iso S31 R1 001.fastq.gz	0:136.22 1:0	A:542725908;C:393749236;G:391185289;T:545475931;N:164709	136	0	542725908	393749236	391185289	545475931	164709	SRX8145120	SRS6507856	SRA1067479	Max Planck Institute for Brain Research\|Synaptic Plasticity	Max Planck Institute for Brain Research	1	0.93526		0.1792		0.70449		0.5011		151		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-04-21	Multi-stage	Multi-stage	Brain	Nervous System
58999	58999	SRR11577244	SRX8145119	SRS6507855	SRP257630	PRJNA627056	Impact of social isolation on brain transcriptome in zebrafish	PRJNA627056	Other	The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.	21 va 3	20170830 21dpf va	breed:Konstanz Wildtype\|age:21 dpf\|dev stage:juvenile\|sex:not applicable\|tissue:brain\|biomaterial provider:Erin Schuman\|collected by:Lukas Anneser\|collection date:2017 08 30\|sample type:whole brain\|store cond:storage in trizol immediate extraction\|treatment:visual access\|replicate:3\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: larval and juvenile brain	D711 D508	D711 D508	RNA extraction from whole brain lysates polyA enrichment reverse transcription and amplification	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	SINGLE	ILLUMINA	NextSeq 500	SRP257630	20170830_21dpf_va_S30_R1_001.fastq.gz	fastq	1665561578.0	12239078.0	20170830 21dpf va S30 R1 001.fastq.gz	0:136.09 1:0	A:523851621;C:320222311;G:318423760;T:502879358;N:184528	136	0	523851621	320222311	318423760	502879358	184528	SRX8145119	SRS6507855	SRA1067479	Max Planck Institute for Brain Research\|Synaptic Plasticity	Max Planck Institute for Brain Research	1	0.92268		0.22072		0.7167		0.50583		150		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-04-21	Multi-stage	Multi-stage	Brain	Nervous System
59000	59000	SRR11577245	SRX8145118	SRS6507854	SRP257630	PRJNA627056	Impact of social isolation on brain transcriptome in zebrafish	PRJNA627056	Other	The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.	21 social 3	20170830 21dpf soc	breed:Konstanz Wildtype\|age:21 dpf\|dev stage:juvenile\|sex:not applicable\|tissue:brain\|biomaterial provider:Erin Schuman\|collected by:Lukas Anneser\|collection date:2018 08 30\|sample type:whole brain\|store cond:storage in trizol immediate extraction\|treatment:social\|replicate:3\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: larval and juvenile brain	D711 D507	D711 D507	RNA extraction from whole brain lysates polyA enrichment reverse transcription and amplification	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	SINGLE	ILLUMINA	NextSeq 500	SRP257630	20170830_21dpf_soc_S29_R1_001.fastq.gz	fastq	1587516569.0	11532068.0	20170830 21dpf soc S29 R1 001.fastq.gz	0:137.66 1:0	A:505388701;C:300044293;G:297465254;T:484459426;N:158895	137	0	505388701	300044293	297465254	484459426	158895	SRX8145118	SRS6507854	SRA1067479	Max Planck Institute for Brain Research\|Synaptic Plasticity	Max Planck Institute for Brain Research	1	0.92277		0.22348		0.7237		0.50214		151		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-04-21	Multi-stage	Multi-stage	Brain	Nervous System
59001	59001	SRR11577246	SRX8145117	SRS6507853	SRP257630	PRJNA627056	Impact of social isolation on brain transcriptome in zebrafish	PRJNA627056	Other	The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.	5 social 3	20170210A 5dpf soc	breed:Konstanz Wildtype\|age:5 dpf\|dev stage:larva\|sex:not applicable\|tissue:brain\|biomaterial provider:Erin Schuman\|collected by:Lukas Anneser\|collection date:2017 02 10\|sample type:whole brain\|store cond:storage in trizol immediate extraction\|treatment:social\|replicate:3\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: larval and juvenile brain	A007	A007	RNA extraction from whole brain lysates polyA enrichment reverse transcription and amplification	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	SINGLE	ILLUMINA	NextSeq 500	SRP257630	20170210A_5dpf_soc_S5_R1_001.fastq.gz	fastq	1726237934.0	14278894.0	20170210A 5dpf soc S5 R1 001.fastq.gz	0:120.89 1:0	A:463605810;C:370696125;G:372572642;T:495475185;N:23888172	120	0	463605810	370696125	372572642	495475185	23888172	SRX8145117	SRS6507853	SRA1067479	Max Planck Institute for Brain Research\|Synaptic Plasticity	Max Planck Institute for Brain Research	1	0.94821		0.14237		0.66689		0.48963		136		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-04-21	Larval	Larval	Brain	Nervous System
59002	59002	SRR11577247	SRX8145116	SRS6507852	SRP257630	PRJNA627056	Impact of social isolation on brain transcriptome in zebrafish	PRJNA627056	Other	The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.	21 iso 3	20170830 21dpf iso	breed:Konstanz Wildtype\|age:21 dpf\|dev stage:juvenile\|sex:not applicable\|tissue:brain\|biomaterial provider:Erin Schuman\|collected by:Lukas Anneser\|collection date:2017 08 30\|sample type:whole brain\|store cond:storage in trizol immediate extraction\|treatment:isolated\|replicate:3\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: larval and juvenile brain	D711 D506	D711 D506	RNA extraction from whole brain lysates polyA enrichment reverse transcription and amplification	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	SINGLE	ILLUMINA	NextSeq 500	SRP257630	20170830_21dpf_iso_S28_R1_001.fastq.gz	fastq	1502071856.0	11108454.0	20170830 21dpf iso S28 R1 001.fastq.gz	0:135.22 1:0	A:465590927;C:293070754;G:290713397;T:452388232;N:308546	135	0	465590927	293070754	290713397	452388232	308546	SRX8145116	SRS6507852	SRA1067479	Max Planck Institute for Brain Research\|Synaptic Plasticity	Max Planck Institute for Brain Research	1	0.9282		0.21564		0.71735		0.48929		122		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-04-21	Multi-stage	Multi-stage	Brain	Nervous System
59003	59003	SRR11577248	SRX8145115	SRS6507851	SRP257630	PRJNA627056	Impact of social isolation on brain transcriptome in zebrafish	PRJNA627056	Other	The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.	14 iso 5	20171019 14dpf iso	breed:Konstanz Wildtype\|age:14 dpf\|dev stage:juvenile\|sex:not applicable\|tissue:brain\|biomaterial provider:Erin Schuman\|collected by:Lukas Anneser\|collection date:2017 10 19\|sample type:whole brain\|store cond:storage in trizol immediate extraction\|treatment:isolated\|replicate:5\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: larval and juvenile brain	D711 D505	D711 D505	RNA extraction from whole brain lysates polyA enrichment reverse transcription and amplification	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	SINGLE	ILLUMINA	NextSeq 500	SRP257630	20171019_14dpf_iso_S27_R1_001.fastq.gz	fastq	1768205560.0	12917483.0	20171019 14dpf iso S27 R1 001.fastq.gz	0:136.88 1:0	A:555603588;C:338259364;G:332890369;T:541226785;N:225454	136	0	555603588	338259364	332890369	541226785	225454	SRX8145115	SRS6507851	SRA1067479	Max Planck Institute for Brain Research\|Synaptic Plasticity	Max Planck Institute for Brain Research	1	0.92237		0.22542		0.7189		0.49571		137		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-04-21	Multi-stage	Multi-stage	Brain	Nervous System
59004	59004	SRR11577249	SRX8145114	SRS6507850	SRP257630	PRJNA627056	Impact of social isolation on brain transcriptome in zebrafish	PRJNA627056	Other	The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.	14 social 5	20171019 14dpf soc	breed:Konstanz Wildtype\|age:14 dpf\|dev stage:juvenile\|sex:not applicable\|tissue:brain\|biomaterial provider:Erin Schuman\|collected by:Lukas Anneser\|collection date:2017 10 19\|sample type:whole brain\|store cond:storage in trizol immediate extraction\|treatment:social\|replicate:5\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: larval and juvenile brain	D711 D504	D711 D504	RNA extraction from whole brain lysates polyA enrichment reverse transcription and amplification	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	SINGLE	ILLUMINA	NextSeq 500	SRP257630	20171019_14dpf_soc_S26_R1_001.fastq.gz	fastq	2449724667.0	17539539.0	20171019 14dpf soc S26 R1 001.fastq.gz	0:139.67 1:0	A:770396759;C:469506555;G:460464367;T:749061593;N:295393	139	0	770396759	469506555	460464367	749061593	295393	SRX8145114	SRS6507850	SRA1067479	Max Planck Institute for Brain Research\|Synaptic Plasticity	Max Planck Institute for Brain Research	1	0.92149		0.22074		0.72176		0.48648		151		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-04-21	Multi-stage	Multi-stage	Brain	Nervous System
59005	59005	SRR11577250	SRX8145113	SRS6507849	SRP257630	PRJNA627056	Impact of social isolation on brain transcriptome in zebrafish	PRJNA627056	Other	The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.	14 iso 4	20170927 14dpf iso	breed:Konstanz Wildtype\|age:14 dpf\|dev stage:juvenile\|sex:not applicable\|tissue:brain\|biomaterial provider:Erin Schuman\|collected by:Lukas Anneser\|collection date:2017 09 27\|sample type:whole brain\|store cond:storage in trizol immediate extraction\|treatment:isolated\|replicate:4\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: larval and juvenile brain	D711 D503	D711 D503	RNA extraction from whole brain lysates polyA enrichment reverse transcription and amplification	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	SINGLE	ILLUMINA	NextSeq 500	SRP257630	20170927_14dpf_iso_S25_R1_001.fastq.gz	fastq	2024375395.0	14714506.0	20170927 14dpf iso S25 R1 001.fastq.gz	0:137.58 1:0	A:630956852;C:392021593;G:387382117;T:613569631;N:445202	137	0	630956852	392021593	387382117	613569631	445202	SRX8145113	SRS6507849	SRA1067479	Max Planck Institute for Brain Research\|Synaptic Plasticity	Max Planck Institute for Brain Research	1	0.92636		0.22205		0.71334		0.46764		151		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-04-21	Multi-stage	Multi-stage	Brain	Nervous System
59006	59006	SRR11577251	SRX8145112	SRS6507848	SRP257630	PRJNA627056	Impact of social isolation on brain transcriptome in zebrafish	PRJNA627056	Other	The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.	14 iso 3	20170912 14dpf iso	breed:Konstanz Wildtype\|age:14 dpf\|dev stage:juvenile\|sex:not applicable\|tissue:brain\|biomaterial provider:Erin Schuman\|collected by:Lukas Anneser\|collection date:2017 09 12\|sample type:whole brain\|store cond:storage in trizol immediate extraction\|treatment:isolated\|replicate:3\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: larval and juvenile brain	D711 D502	D711 D502	RNA extraction from whole brain lysates polyA enrichment reverse transcription and amplification	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	SINGLE	ILLUMINA	NextSeq 500	SRP257630	20170912_14dpf_iso_S24_R1_001.fastq.gz	fastq	1539139897.0	11503089.0	20170912 14dpf iso S24 R1 001.fastq.gz	0:133.80 1:0	A:462339700;C:309696226;G:308140729;T:457996565;N:966677	133	0	462339700	309696226	308140729	457996565	966677	SRX8145112	SRS6507848	SRA1067479	Max Planck Institute for Brain Research\|Synaptic Plasticity	Max Planck Institute for Brain Research	1	0.93509		0.18982		0.70745		0.49473		125		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-04-21	Multi-stage	Multi-stage	Brain	Nervous System
59007	59007	SRR11577252	SRX8145111	SRS6507847	SRP257630	PRJNA627056	Impact of social isolation on brain transcriptome in zebrafish	PRJNA627056	Other	The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.	14 social 3	20170912 14dpf soc	breed:Konstanz Wildtype\|age:14 dpf\|dev stage:juvenile\|sex:not applicable\|tissue:brain\|biomaterial provider:Erin Schuman\|collected by:Lukas Anneser\|collection date:2017 09 12\|sample type:whole brain\|store cond:storage in trizol immediate extraction\|treatment:social\|replicate:3\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: larval and juvenile brain	D711 D501	D711 D501	RNA extraction from whole brain lysates polyA enrichment reverse transcription and amplification	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	SINGLE	ILLUMINA	NextSeq 500	SRP257630	20170912_14dpf_soc_S23_R1_001.fastq.gz	fastq	1846815763.0	13311290.0	20170912 14dpf soc S23 R1 001.fastq.gz	0:138.74 1:0	A:532697843;C:390098289;G:387302654;T:536566282;N:150695	138	0	532697843	390098289	387302654	536566282	150695	SRX8145111	SRS6507847	SRA1067479	Max Planck Institute for Brain Research\|Synaptic Plasticity	Max Planck Institute for Brain Research	1	0.94078		0.16787		0.70345		0.50462		150		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-04-21	Multi-stage	Multi-stage	Brain	Nervous System
59008	59008	SRR11577253	SRX8145110	SRS6507846	SRP257630	PRJNA627056	Impact of social isolation on brain transcriptome in zebrafish	PRJNA627056	Other	The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.	8 iso 6	20171109 8dpf iso B	breed:Konstanz Wildtype\|age:8 dpf\|dev stage:larva\|sex:not applicable\|tissue:brain\|biomaterial provider:Erin Schuman\|collected by:Lukas Anneser\|collection date:2017 11 09\|sample type:whole brain\|store cond:storage in trizol immediate extraction\|treatment:isolated\|replicate:6\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: larval and juvenile brain	D710 D508	D710 D508	RNA extraction from whole brain lysates polyA enrichment reverse transcription and amplification	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	SINGLE	ILLUMINA	NextSeq 500	SRP257630	20171109_8dpf_iso_B_S22_R1_001.fastq.gz	fastq	1700207946.0	12434052.0	20171109 8dpf iso B S22 R1 001.fastq.gz	0:136.74 1:0	A:521541858;C:336119080;G:332771490;T:509018316;N:757202	136	0	521541858	336119080	332771490	509018316	757202	SRX8145110	SRS6507846	SRA1067479	Max Planck Institute for Brain Research\|Synaptic Plasticity	Max Planck Institute for Brain Research	1	0.93058		0.19578		0.68868		0.50184		139		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-04-21	Larval	Larval	Brain	Nervous System
59009	59009	SRR11577254	SRX8145109	SRS6507845	SRP257630	PRJNA627056	Impact of social isolation on brain transcriptome in zebrafish	PRJNA627056	Other	The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.	8 social 6	20171109 8dpf soc B	breed:Konstanz Wildtype\|age:8 dpf\|dev stage:larva\|sex:not applicable\|tissue:brain\|biomaterial provider:Erin Schuman\|collected by:Lukas Anneser\|collection date:2017 11 09\|sample type:whole brain\|store cond:storage in trizol immediate extraction\|treatment:social\|replicate:6\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: larval and juvenile brain	D710 D507	D710 D507	RNA extraction from whole brain lysates polyA enrichment reverse transcription and amplification	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	SINGLE	ILLUMINA	NextSeq 500	SRP257630	20171109_8dpf_soc_B_S21_R1_001.fastq.gz	fastq	2564439613.0	18763192.0	20171109 8dpf soc B S21 R1 001.fastq.gz	0:136.67 1:0	A:790757790;C:503826332;G:501530520;T:767769522;N:555449	136	0	790757790	503826332	501530520	767769522	555449	SRX8145109	SRS6507845	SRA1067479	Max Planck Institute for Brain Research\|Synaptic Plasticity	Max Planck Institute for Brain Research	1	0.92839		0.1986		0.68885		0.50483		131		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-04-21	Larval	Larval	Brain	Nervous System
59010	59010	SRR11577255	SRX8145108	SRS6507844	SRP257630	PRJNA627056	Impact of social isolation on brain transcriptome in zebrafish	PRJNA627056	Other	The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.	8 iso 5	20171026 8dpf iso	breed:Konstanz Wildtype\|age:8 dpf\|dev stage:larva\|sex:not applicable\|tissue:brain\|biomaterial provider:Erin Schuman\|collected by:Lukas Anneser\|collection date:2017 10 26\|sample type:whole brain\|store cond:storage in trizol immediate extraction\|treatment:isolated\|replicate:5\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: larval and juvenile brain	D710 D506	D710 D506	RNA extraction from whole brain lysates polyA enrichment reverse transcription and amplification	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	SINGLE	ILLUMINA	NextSeq 500	SRP257630	20171026_8dpf_iso_S20_R1_001.fastq.gz	fastq	2826413292.0	20452973.0	20171026 8dpf iso S20 R1 001.fastq.gz	0:138.19 1:0	A:865014614;C:559489084;G:552925517;T:847716596;N:1267481	138	0	865014614	559489084	552925517	847716596	1267481	SRX8145108	SRS6507844	SRA1067479	Max Planck Institute for Brain Research\|Synaptic Plasticity	Max Planck Institute for Brain Research	1	0.92608		0.2105		0.67903		0.49051		151		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-04-21	Larval	Larval	Brain	Nervous System
59011	59011	SRR11577256	SRX8145107	SRS6507843	SRP257630	PRJNA627056	Impact of social isolation on brain transcriptome in zebrafish	PRJNA627056	Other	The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.	8 social 5	20171026 8dpf soc	breed:Konstanz Wildtype\|age:8 dpf\|dev stage:larva\|sex:not applicable\|tissue:brain\|biomaterial provider:Erin Schuman\|collected by:Lukas Anneser\|collection date:2017 10 26\|sample type:whole brain\|store cond:storage in trizol immediate extraction\|treatment:social\|replicate:5\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: larval and juvenile brain	D710 D505	D710 D505	RNA extraction from whole brain lysates polyA enrichment reverse transcription and amplification	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	SINGLE	ILLUMINA	NextSeq 500	SRP257630	20171026_8dpf_soc_S19_R1_001.fastq.gz	fastq	2392544953.0	17491839.0	20171026 8dpf soc S19 R1 001.fastq.gz	0:136.78 1:0	A:742679673;C:465343974;G:462989237;T:721074201;N:457868	136	0	742679673	465343974	462989237	721074201	457868	SRX8145107	SRS6507843	SRA1067479	Max Planck Institute for Brain Research\|Synaptic Plasticity	Max Planck Institute for Brain Research	1	0.92316		0.21835		0.68655		0.48878		98		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-04-21	Larval	Larval	Brain	Nervous System
59012	59012	SRR11577257	SRX8145106	SRS6507842	SRP257630	PRJNA627056	Impact of social isolation on brain transcriptome in zebrafish	PRJNA627056	Other	The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.	5 iso 2	20170209 5dpf iso	breed:Konstanz Wildtype\|age:5 dpf\|dev stage:larva\|sex:not applicable\|tissue:brain\|biomaterial provider:Erin Schuman\|collected by:Lukas Anneser\|collection date:2017 02 09\|sample type:whole brain\|store cond:storage in trizol immediate extraction\|treatment:isolated\|replicate:2\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: larval and juvenile brain	A006	A006	RNA extraction from whole brain lysates polyA enrichment reverse transcription and amplification	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	SINGLE	ILLUMINA	NextSeq 500	SRP257630	20170209_5dpf_iso_S4_R1_001.fastq.gz	fastq	1425974682.0	10933160.0	20170209 5dpf iso S4 R1 001.fastq.gz	0:130.43 1:0	A:384119497;C:314204651;G:311289822;T:412270680;N:4090032	130	0	384119497	314204651	311289822	412270680	4090032	SRX8145106	SRS6507842	SRA1067479	Max Planck Institute for Brain Research\|Synaptic Plasticity	Max Planck Institute for Brain Research	1	0.94694		0.14009		0.66271		0.50186		35		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-04-21	Larval	Larval	Brain	Nervous System
59013	59013	SRR11577258	SRX8145105	SRS6507841	SRP257630	PRJNA627056	Impact of social isolation on brain transcriptome in zebrafish	PRJNA627056	Other	The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.	8 iso 4	20171019 8dpf iso	breed:Konstanz Wildtype\|age:8 dpf\|dev stage:larva\|sex:not applicable\|tissue:brain\|biomaterial provider:Erin Schuman\|collected by:Lukas Anneser\|collection date:2017 10 19\|sample type:whole brain\|store cond:storage in trizol immediate extraction\|treatment:isolated\|replicate:4\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: larval and juvenile brain	D710 D504	D710 D504	RNA extraction from whole brain lysates polyA enrichment reverse transcription and amplification	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	SINGLE	ILLUMINA	NextSeq 500	SRP257630	20171019_8dpf_iso_S18_R1_001.fastq.gz	fastq	1983037322.0	14462095.0	20171019 8dpf iso S18 R1 001.fastq.gz	0:137.12 1:0	A:615819850;C:385988693;G:385056417;T:595787232;N:385130	137	0	615819850	385988693	385056417	595787232	385130	SRX8145105	SRS6507841	SRA1067479	Max Planck Institute for Brain Research\|Synaptic Plasticity	Max Planck Institute for Brain Research	1	0.92714		0.20602		0.68387		0.49262		150		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-04-21	Larval	Larval	Brain	Nervous System
59014	59014	SRR11577259	SRX8145104	SRS6507840	SRP257630	PRJNA627056	Impact of social isolation on brain transcriptome in zebrafish	PRJNA627056	Other	The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.	8 social 4	20171019 8dpf soc	breed:Konstanz Wildtype\|age:8 dpf\|dev stage:larva\|sex:not applicable\|tissue:brain\|biomaterial provider:Erin Schuman\|collected by:Lukas Anneser\|collection date:2017 10 19\|sample type:whole brain\|store cond:storage in trizol immediate extraction\|treatment:social\|replicate:4\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: larval and juvenile brain	D710 D503	D710 D503	RNA extraction from whole brain lysates polyA enrichment reverse transcription and amplification	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	SINGLE	ILLUMINA	NextSeq 500	SRP257630	20171019_8dpf_soc_S17_R1_001.fastq.gz	fastq	2128354590.0	15330724.0	20171019 8dpf soc S17 R1 001.fastq.gz	0:138.83 1:0	A:664838663;C:412783437;G:406007808;T:644520130;N:204552	138	0	664838663	412783437	406007808	644520130	204552	SRX8145104	SRS6507840	SRA1067479	Max Planck Institute for Brain Research\|Synaptic Plasticity	Max Planck Institute for Brain Research	1	0.92294		0.21336		0.68907		0.48677		112		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-04-21	Larval	Larval	Brain	Nervous System
59015	59015	SRR11577260	SRX8145103	SRS6507839	SRP257630	PRJNA627056	Impact of social isolation on brain transcriptome in zebrafish	PRJNA627056	Other	The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.	8 iso 3	20170921 8dpf iso	breed:Konstanz Wildtype\|age:8 dpf\|dev stage:larva\|sex:not applicable\|tissue:brain\|biomaterial provider:Erin Schuman\|collected by:Lukas Anneser\|collection date:2017 09 21\|sample type:whole brain\|store cond:storage in trizol immediate extraction\|treatment:isolated\|replicate:3\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: larval and juvenile brain	D710 D502	D710 D502	RNA extraction from whole brain lysates polyA enrichment reverse transcription and amplification	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	SINGLE	ILLUMINA	NextSeq 500	SRP257630	20170921_8dpf_iso_S16_R1_001.fastq.gz	fastq	1715158999.0	12523396.0	20170921 8dpf iso S16 R1 001.fastq.gz	0:136.96 1:0	A:517292645;C:345214588;G:340081628;T:512406926;N:163212	136	0	517292645	345214588	340081628	512406926	163212	SRX8145103	SRS6507839	SRA1067479	Max Planck Institute for Brain Research\|Synaptic Plasticity	Max Planck Institute for Brain Research	1	0.93065		0.1956		0.67543		0.48715		112		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-04-21	Larval	Larval	Brain	Nervous System
59016	59016	SRR11577261	SRX8145102	SRS6507838	SRP257630	PRJNA627056	Impact of social isolation on brain transcriptome in zebrafish	PRJNA627056	Other	The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.	8 social 3	20170921 8dpf soc	breed:Konstanz Wildtype\|age:8 dpf\|dev stage:larva\|sex:not applicable\|tissue:brain\|biomaterial provider:Erin Schuman\|collected by:Lukas Anneser\|collection date:2017 09 21\|sample type:whole brain\|store cond:storage in trizol immediate extraction\|treatment:social\|replicate:3\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: larval and juvenile brain	D710 D501	D710 D501	RNA extraction from whole brain lysates polyA enrichment reverse transcription and amplification	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	SINGLE	ILLUMINA	NextSeq 500	SRP257630	20170921_8dpf_soc_S15_R1_001.fastq.gz	fastq	1903374830.0	13985406.0	20170921 8dpf soc S15 R1 001.fastq.gz	0:136.10 1:0	A:576312482;C:382917713;G:376058448;T:567672351;N:413836	136	0	576312482	382917713	376058448	567672351	413836	SRX8145102	SRS6507838	SRA1067479	Max Planck Institute for Brain Research\|Synaptic Plasticity	Max Planck Institute for Brain Research	1	0.928		0.20225		0.68079		0.47235		139		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-04-21	Larval	Larval	Brain	Nervous System
59017	59017	SRR11577262	SRX8145101	SRS6507837	SRP257630	PRJNA627056	Impact of social isolation on brain transcriptome in zebrafish	PRJNA627056	Other	The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.	21 va 2	20170912 21dpf va	breed:Konstanz Wildtype\|age:21 dpf\|dev stage:juvenile\|sex:not applicable\|tissue:brain\|biomaterial provider:Erin Schuman\|collected by:Lukas Anneser\|collection date:2017 09 12\|sample type:whole brain\|store cond:storage in trizol immediate extraction\|treatment:visual access\|replicate:2\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: larval and juvenile brain	D709 D508	D709 D508	RNA extraction from whole brain lysates polyA enrichment reverse transcription and amplification	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	SINGLE	ILLUMINA	NextSeq 500	SRP257630	20170912_21dpf_va_S14_R1_001.fastq.gz	fastq	1672012701.0	12141814.0	20170912 21dpf va S14 R1 001.fastq.gz	0:137.71 1:0	A:476642379;C:357414674;G:356006342;T:480630478;N:1318828	137	0	476642379	357414674	356006342	480630478	1318828	SRX8145101	SRS6507837	SRA1067479	Max Planck Institute for Brain Research\|Synaptic Plasticity	Max Planck Institute for Brain Research	1	0.94024		0.16163		0.69779		0.49063		150		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-04-21	Multi-stage	Multi-stage	Brain	Nervous System
59018	59018	SRR11577263	SRX8145100	SRS6507836	SRP257630	PRJNA627056	Impact of social isolation on brain transcriptome in zebrafish	PRJNA627056	Other	The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.	21 social 2	20170912 21dpf soc	breed:Konstanz Wildtype\|age:21 dpf\|dev stage:juvenile\|sex:not applicable\|tissue:brain\|biomaterial provider:Erin Schuman\|collected by:Lukas Anneser\|collection date:2017 09 12\|sample type:whole brain\|store cond:storage in trizol immediate extraction\|treatment:social\|replicate:2\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: larval and juvenile brain	D709 D507	D709 D507	RNA extraction from whole brain lysates polyA enrichment reverse transcription and amplification	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	SINGLE	ILLUMINA	NextSeq 500	SRP257630	20170912_21dpf_soc_S13_R1_001.fastq.gz	fastq	2080939075.0	14649700.0	20170912 21dpf soc S13 R1 001.fastq.gz	0:142.05 1:0	A:597966503;C:441812252;G:438654868;T:601449778;N:1055674	142	0	597966503	441812252	438654868	601449778	1055674	SRX8145100	SRS6507836	SRA1067479	Max Planck Institute for Brain Research\|Synaptic Plasticity	Max Planck Institute for Brain Research	1	0.93757		0.1703		0.70061		0.49625		148		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-04-21	Multi-stage	Multi-stage	Brain	Nervous System
59019	59019	SRR11577264	SRX8145099	SRS6507835	SRP257630	PRJNA627056	Impact of social isolation on brain transcriptome in zebrafish	PRJNA627056	Other	The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.	21 iso 2	20170912 21dpf iso	breed:Konstanz Wildtype\|age:21 dpf\|dev stage:juvenile\|sex:not applicable\|tissue:brain\|biomaterial provider:Erin Schuman\|collected by:Lukas Anneser\|collection date:2017 09 12\|sample type:whole brain\|store cond:storage in trizol immediate extraction\|treatment:isolated\|replicate:2\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: larval and juvenile brain	D709 D506	D709 D506	RNA extraction from whole brain lysates polyA enrichment reverse transcription and amplification	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	SINGLE	ILLUMINA	NextSeq 500	SRP257630	20170912_21dpf_iso_S12_R1_001.fastq.gz	fastq	3489258082.0	25226043.0	20170912 21dpf iso S12 R1 001.fastq.gz	0:138.32 1:0	A:1004881001;C:740475054;G:734330793;T:1008365272;N:1205962	138	0	1004881001	740475054	734330793	1008365272	1205962	SRX8145099	SRS6507835	SRA1067479	Max Planck Institute for Brain Research\|Synaptic Plasticity	Max Planck Institute for Brain Research	1	0.9401		0.16556		0.69848		0.48682		151		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-04-21	Multi-stage	Multi-stage	Brain	Nervous System
59020	59020	SRR11577265	SRX8145098	SRS6507834	SRP257630	PRJNA627056	Impact of social isolation on brain transcriptome in zebrafish	PRJNA627056	Other	The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.	21 va 1	20170816 21dpf va	breed:Konstanz Wildtype\|age:21 dpf\|dev stage:juvenile\|sex:not applicable\|tissue:brain\|biomaterial provider:Erin Schuman\|collected by:Lukas Anneser\|collection date:2017 08 16\|sample type:whole brain\|store cond:storage in trizol immediate extraction\|treatment:visual access\|replicate:1\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: larval and juvenile brain	D709 D505	D709 D505	RNA extraction from whole brain lysates polyA enrichment reverse transcription and amplification	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	SINGLE	ILLUMINA	NextSeq 500	SRP257630	20170816_21dpf_va_S11_R1_001.fastq.gz	fastq	2357126069.0	17284572.0	20170816 21dpf va S11 R1 001.fastq.gz	0:136.37 1:0	A:673543974;C:503174130;G:502244040;T:676474372;N:1689553	136	0	673543974	503174130	502244040	676474372	1689553	SRX8145098	SRS6507834	SRA1067479	Max Planck Institute for Brain Research\|Synaptic Plasticity	Max Planck Institute for Brain Research	1	0.94094		0.16335		0.69718		0.50833		150		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-04-21	Multi-stage	Multi-stage	Brain	Nervous System
59021	59021	SRR11577266	SRX8145097	SRS6507833	SRP257630	PRJNA627056	Impact of social isolation on brain transcriptome in zebrafish	PRJNA627056	Other	The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.	21 social 1	20170816 21dpf soc	breed:Konstanz Wildtype\|age:21 dpf\|dev stage:juvenile\|sex:not applicable\|tissue:brain\|biomaterial provider:Erin Schuman\|collected by:Lukas Anneser\|collection date:2017 08 16\|sample type:whole brain\|store cond:storage in trizol immediate extraction\|treatment:social\|replicate:1\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: larval and juvenile brain	D709 D504	D709 D504	RNA extraction from whole brain lysates polyA enrichment reverse transcription and amplification	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	SINGLE	ILLUMINA	NextSeq 500	SRP257630	20170816_21dpf_soc_S10_R1_001.fastq.gz	fastq	1891180488.0	13827534.0	20170816 21dpf soc S10 R1 001.fastq.gz	0:136.77 1:0	A:533386853;C:409970181;G:408848698;T:536931439;N:2043317	136	0	533386853	409970181	408848698	536931439	2043317	SRX8145097	SRS6507833	SRA1067479	Max Planck Institute for Brain Research\|Synaptic Plasticity	Max Planck Institute for Brain Research	1	0.94486		0.15116		0.70007		0.50715		86		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-04-21	Multi-stage	Multi-stage	Brain	Nervous System
59022	59022	SRR11577267	SRX8145096	SRS6507832	SRP257630	PRJNA627056	Impact of social isolation on brain transcriptome in zebrafish	PRJNA627056	Other	The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.	21 iso 1	20170816 21dpf iso	breed:Konstanz Wildtype\|age:21 dpf\|dev stage:juvenile\|sex:not applicable\|tissue:brain\|biomaterial provider:Erin Schuman\|collected by:Lukas Anneser\|collection date:2017 08 16\|sample type:whole brain\|store cond:storage in trizol immediate extraction\|treatment:isolated\|replicate:1\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: larval and juvenile brain	D709 D503	D709 D503	RNA extraction from whole brain lysates polyA enrichment reverse transcription and amplification	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	SINGLE	ILLUMINA	NextSeq 500	SRP257630	20170816_21dpf_iso_S9_R1_001.fastq.gz	fastq	1787118538.0	12892680.0	20170816 21dpf iso S9 R1 001.fastq.gz	0:138.61 1:0	A:524315938;C:372386070;G:371250402;T:518145923;N:1020205	138	0	524315938	372386070	371250402	518145923	1020205	SRX8145096	SRS6507832	SRA1067479	Max Planck Institute for Brain Research\|Synaptic Plasticity	Max Planck Institute for Brain Research	1	0.93597		0.18637		0.70185		0.50951		151		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-04-21	Multi-stage	Multi-stage	Brain	Nervous System
59023	59023	SRR11577268	SRX8145095	SRS6507831	SRP257630	PRJNA627056	Impact of social isolation on brain transcriptome in zebrafish	PRJNA627056	Other	The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.	5 social 2	20170209 5dpf soc	breed:Konstanz Wildtype\|age:5 dpf\|dev stage:larva\|sex:not applicable\|tissue:brain\|biomaterial provider:Erin Schuman\|collected by:Lukas Anneser\|collection date:2017 02 09\|sample type:whole brain\|store cond:storage in trizol immediate extraction\|treatment:social\|replicate:2\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: larval and juvenile brain	A005	A005	RNA extraction from whole brain lysates polyA enrichment reverse transcription and amplification	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	SINGLE	ILLUMINA	NextSeq 500	SRP257630	20170209_5dpf_soc_S3_R1_001.fastq.gz	fastq	932021340.0	8105951.0	20170209 5dpf soc S3 R1 001.fastq.gz	0:114.98 1:0	A:242483339;C:210201362;G:210814912;T:264386634;N:4135093	114	0	242483339	210201362	210814912	264386634	4135093	SRX8145095	SRS6507831	SRA1067479	Max Planck Institute for Brain Research\|Synaptic Plasticity	Max Planck Institute for Brain Research	1	0.95059		0.13154		0.66099		0.48071		86		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-04-21	Larval	Larval	Brain	Nervous System
59024	59024	SRR11577269	SRX8145094	SRS6507830	SRP257630	PRJNA627056	Impact of social isolation on brain transcriptome in zebrafish	PRJNA627056	Other	The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.	14 social 2	20171102 14dpf soc	breed:Konstanz Wildtype\|age:14 dpf\|dev stage:juvenile\|sex:not applicable\|tissue:brain\|biomaterial provider:Erin Schuman\|collected by:Lukas Anneser\|collection date:2017 11 02\|sample type:whole brain\|store cond:storage in trizol immediate extraction\|treatment:social\|replicate:2\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: larval and juvenile brain	D709 D502	D709 D502	RNA extraction from whole brain lysates polyA enrichment reverse transcription and amplification	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	SINGLE	ILLUMINA	NextSeq 500	SRP257630	20171102_14dpf_soc_S8_R1_001.fastq.gz	fastq	1822206481.0	13207373.0	20171102 14dpf soc S8 R1 001.fastq.gz	0:137.97 1:0	A:521401675;C:390638985;G:384942844;T:524801703;N:421274	137	0	521401675	390638985	384942844	524801703	421274	SRX8145094	SRS6507830	SRA1067479	Max Planck Institute for Brain Research\|Synaptic Plasticity	Max Planck Institute for Brain Research	1	0.93965		0.1632		0.70406		0.49414		137		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-04-21	Multi-stage	Multi-stage	Brain	Nervous System
59025	59025	SRR11577270	SRX8145093	SRS6507829	SRP257630	PRJNA627056	Impact of social isolation on brain transcriptome in zebrafish	PRJNA627056	Other	The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.	14 iso 2	20171102 14dpf iso	breed:Konstanz Wildtype\|age:14 dpf\|dev stage:juvenile\|sex:not applicable\|tissue:brain\|biomaterial provider:Erin Schuman\|collected by:Lukas Anneser\|collection date:2017 11 02\|sample type:whole brain\|store cond:storage in trizol immediate extraction\|treatment:isolated\|replicate:2\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: larval and juvenile brain	D709D 501	D709D 501	RNA extraction from whole brain lysates polyA enrichment reverse transcription and amplification	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	SINGLE	ILLUMINA	NextSeq 500	SRP257630	20171102_14dpf_iso_S7_R1_001.fastq.gz	fastq	1654915081.0	12110608.0	20171102 14dpf iso S7 R1 001.fastq.gz	0:136.65 1:0	A:453654237;C:368578514;G:366570763;T:464593788;N:1517779	136	0	453654237	368578514	366570763	464593788	1517779	SRX8145093	SRS6507829	SRA1067479	Max Planck Institute for Brain Research\|Synaptic Plasticity	Max Planck Institute for Brain Research	1	0.94734		0.14469		0.69976		0.48909		151		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-04-21	Multi-stage	Multi-stage	Brain	Nervous System
59026	59026	SRR11577271	SRX8145092	SRS6507828	SRP257630	PRJNA627056	Impact of social isolation on brain transcriptome in zebrafish	PRJNA627056	Other	The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.	14 social 1	20170921 14dpf soc	breed:Konstanz Wildtype\|age:14 dpf\|dev stage:juvenile\|sex:not applicable\|tissue:brain\|biomaterial provider:Erin Schuman\|collected by:Lukas Anneser\|collection date:2017 09 21\|sample type:whole brain\|store cond:storage in trizol immediate extraction\|treatment:social\|replicate:1\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: larval and juvenile brain	D708 D506	D708 D506	RNA extraction from whole brain lysates polyA enrichment reverse transcription and amplification	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	SINGLE	ILLUMINA	NextSeq 500	SRP257630	20170921__14dpf_soc_S6_R1_001.fastq.gz	fastq	2318687589.0	16884467.0	20170921 14dpf soc S6 R1 001.fastq.gz	0:137.33 1:0	A:670856703;C:490885071;G:485692957;T:670107300;N:1145558	137	0	670856703	490885071	485692957	670107300	1145558	SRX8145092	SRS6507828	SRA1067479	Max Planck Institute for Brain Research\|Synaptic Plasticity	Max Planck Institute for Brain Research	1	0.94232		0.14969		0.69846		0.50741		136		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-04-21	Multi-stage	Multi-stage	Brain	Nervous System
59027	59027	SRR11577272	SRX8145091	SRS6507827	SRP257630	PRJNA627056	Impact of social isolation on brain transcriptome in zebrafish	PRJNA627056	Other	The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.	14 iso 1	20170921 14dpf iso	breed:Konstanz Wildtype\|age:14 dpf\|dev stage:juvenile\|sex:not applicable\|tissue:brain\|biomaterial provider:Erin Schuman\|collected by:Lukas Anneser\|collection date:2017 09 21\|sample type:whole brain\|store cond:storage in trizol immediate extraction\|treatment:isolated\|replicate:1\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: larval and juvenile brain	D708 D505	D708 D505	RNA extraction from whole brain lysates polyA enrichment reverse transcription and amplification	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	SINGLE	ILLUMINA	NextSeq 500	SRP257630	20170921__14dpf_iso_S5_R1_001.fastq.gz	fastq	2786167106.0	20134934.0	20170921 14dpf iso S5 R1 001.fastq.gz	0:138.37 1:0	A:830172483;C:576374466;G:571085075;T:807339855;N:1195227	138	0	830172483	576374466	571085075	807339855	1195227	SRX8145091	SRS6507827	SRA1067479	Max Planck Institute for Brain Research\|Synaptic Plasticity	Max Planck Institute for Brain Research	1	0.9363		0.16883		0.70325		0.50421		151		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-04-21	Multi-stage	Multi-stage	Brain	Nervous System
59028	59028	SRR11577273	SRX8145090	SRS6507826	SRP257630	PRJNA627056	Impact of social isolation on brain transcriptome in zebrafish	PRJNA627056	Other	The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.	8 social 2	20171109 8dpf soc	breed:Konstanz Wildtype\|age:8 dpf\|dev stage:larva\|sex:not applicable\|tissue:brain\|biomaterial provider:Erin Schuman\|collected by:Lukas Anneser\|collection date:2017 11 09\|sample type:whole brain\|store cond:storage in trizol immediate extraction\|treatment:social\|replicate:2\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: larval and juvenile brain	D708 D504	D708 D504	RNA extraction from whole brain lysates polyA enrichment reverse transcription and amplification	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	SINGLE	ILLUMINA	NextSeq 500	SRP257630	20171109__8dpf_soc_S4_R1_001.fastq.gz	fastq	3315005132.0	25084324.0	20171109 8dpf soc S4 R1 001.fastq.gz	0:132.15 1:0	A:943965767;C:716020466;G:709793117;T:943523271;N:1702511	132	0	943965767	716020466	709793117	943523271	1702511	SRX8145090	SRS6507826	SRA1067479	Max Planck Institute for Brain Research\|Synaptic Plasticity	Max Planck Institute for Brain Research	1	0.94089		0.15844		0.68314		0.48662		150		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-04-21	Larval	Larval	Brain	Nervous System
59029	59029	SRR11577274	SRX8145089	SRS6507825	SRP257630	PRJNA627056	Impact of social isolation on brain transcriptome in zebrafish	PRJNA627056	Other	The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.	8 iso 2	20171109 8dpf iso	breed:Konstanz Wildtype\|age:8 dpf\|dev stage:larva\|sex:not applicable\|tissue:brain\|biomaterial provider:Erin Schuman\|collected by:Lukas Anneser\|collection date:2017 11 09\|sample type:whole brain\|store cond:storage in trizol immediate extraction\|treatment:isolated\|replicate:2\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: larval and juvenile brain	D708 D503	D708 D503	RNA extraction from whole brain lysates polyA enrichment reverse transcription and amplification	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	SINGLE	ILLUMINA	NextSeq 500	SRP257630	20171109__8dpf_iso_S3_R1_001.fastq.gz	fastq	2050353509.0	15447845.0	20171109 8dpf iso S3 R1 001.fastq.gz	0:132.73 1:0	A:587865535;C:439314529;G:435742480;T:586757262;N:673703	132	0	587865535	439314529	435742480	586757262	673703	SRX8145089	SRS6507825	SRA1067479	Max Planck Institute for Brain Research\|Synaptic Plasticity	Max Planck Institute for Brain Research	1	0.93978		0.1602		0.67381		0.48469		151		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-04-21	Larval	Larval	Brain	Nervous System
59030	59030	SRR11577275	SRX8145088	SRS6507824	SRP257630	PRJNA627056	Impact of social isolation on brain transcriptome in zebrafish	PRJNA627056	Other	The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.	8 social 1	20171102 8dpf soc	breed:Konstanz Wildtype\|age:8 dpf\|dev stage:larva\|sex:not applicable\|tissue:brain\|biomaterial provider:Erin Schuman\|collected by:Lukas Anneser\|collection date:2017 11 02\|sample type:whole brain\|store cond:storage in trizol immediate extraction\|treatment:social\|replicate:1\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: larval and juvenile brain	D708 D502	D708 D502	RNA extraction from whole brain lysates polyA enrichment reverse transcription and amplification	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	SINGLE	ILLUMINA	NextSeq 500	SRP257630	20171102__8dpf_soc_S2_R1_001.fastq.gz	fastq	1343770858.0	9948770.0	20171102 8dpf soc S2 R1 001.fastq.gz	0:135.07 1:0	A:393209270;C:281371562;G:280065221;T:388373414;N:751391	135	0	393209270	281371562	280065221	388373414	751391	SRX8145088	SRS6507824	SRA1067479	Max Planck Institute for Brain Research\|Synaptic Plasticity	Max Planck Institute for Brain Research	1	0.93753		0.16528		0.67478		0.48859		151		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-04-21	Larval	Larval	Brain	Nervous System
59031	59031	SRR11577276	SRX8145087	SRS6507823	SRP257630	PRJNA627056	Impact of social isolation on brain transcriptome in zebrafish	PRJNA627056	Other	The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.	8 iso 1	20171102 8dpf iso	breed:Konstanz Wildtype\|age:8 dpf\|dev stage:larva\|sex:not applicable\|tissue:brain\|biomaterial provider:Erin Schuman\|collected by:Lukas Anneser\|collection date:2017 11 02\|sample type:whole brain\|store cond:storage in trizol immediate extraction\|treatment:isolated\|replicate:1\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: larval and juvenile brain	D708 D501	D708 D501	RNA extraction from whole brain lysates polyA enrichment reverse transcription and amplification	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	SINGLE	ILLUMINA	NextSeq 500	SRP257630	20171102__8dpf_iso_S1_R1_001.fastq.gz	fastq	2222891523.0	16512518.0	20171102 8dpf iso S1 R1 001.fastq.gz	0:134.62 1:0	A:612900253;C:492583648;G:489352034;T:626301202;N:1754386	134	0	612900253	492583648	489352034	626301202	1754386	SRX8145087	SRS6507823	SRA1067479	Max Planck Institute for Brain Research\|Synaptic Plasticity	Max Planck Institute for Brain Research	1	0.94375		0.14492		0.67117		0.4862		150		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-04-21	Larval	Larval	Brain	Nervous System
59032	59032	SRR11577277	SRX8145086	SRS6507822	SRP257630	PRJNA627056	Impact of social isolation on brain transcriptome in zebrafish	PRJNA627056	Other	The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.	5 iso 6	20170222B 5dpf iso	breed:Konstanz Wildtype\|age:5 dpf\|dev stage:larva\|sex:not applicable\|tissue:brain\|biomaterial provider:Erin Schuman\|collected by:Lukas Anneser\|collection date:2017 02 22\|sample type:whole brain\|store cond:storage in trizol immediate extraction\|treatment:isolated\|replicate:6\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: larval and juvenile brain	A019	A019	RNA extraction from whole brain lysates polyA enrichment reverse transcription and amplification	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	SINGLE	ILLUMINA	NextSeq 500	SRP257630	20170222B_5dpf_iso_S12_R1_001.fastq.gz	fastq	1384115190.0	10880190.0	20170222B 5dpf iso S12 R1 001.fastq.gz	0:127.21 1:0	A:374024483;C:300637678;G:306091186;T:396608297;N:6753546	127	0	374024483	300637678	306091186	396608297	6753546	SRX8145086	SRS6507822	SRA1067479	Max Planck Institute for Brain Research\|Synaptic Plasticity	Max Planck Institute for Brain Research	1	0.93966		0.14845		0.66145		0.49277		135		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-04-21	Larval	Larval	Brain	Nervous System
59033	59033	SRR11577278	SRX8145085	SRS6507821	SRP257630	PRJNA627056	Impact of social isolation on brain transcriptome in zebrafish	PRJNA627056	Other	The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.	5 social 6	20170222B 5dpf soc	breed:Konstanz Wildtype\|age:5 dpf\|dev stage:larva\|sex:not applicable\|tissue:brain\|biomaterial provider:Erin Schuman\|collected by:Lukas Anneser\|collection date:2017 02 22\|sample type:whole brain\|store cond:storage in trizol immediate extraction\|treatment:social\|replicate:6\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: larval and juvenile brain	A018	A018	RNA extraction from whole brain lysates polyA enrichment reverse transcription and amplification	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	SINGLE	ILLUMINA	NextSeq 500	SRP257630	20170222B_5dpf_soc_S11_R1_001.fastq.gz	fastq	1509062868.0	11709685.0	20170222B 5dpf soc S11 R1 001.fastq.gz	0:128.87 1:0	A:424881841;C:317025415;G:321339469;T:440828991;N:4987152	128	0	424881841	317025415	321339469	440828991	4987152	SRX8145085	SRS6507821	SRA1067479	Max Planck Institute for Brain Research\|Synaptic Plasticity	Max Planck Institute for Brain Research	1	0.92918		0.18084		0.67067		0.48693		113		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-04-21	Larval	Larval	Brain	Nervous System
59034	59034	SRR11577279	SRX8145084	SRS6507820	SRP257630	PRJNA627056	Impact of social isolation on brain transcriptome in zebrafish	PRJNA627056	Other	The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.	5 iso 1	20170201 5pdf iso	breed:Konstanz Wildtype\|age:5 dpf\|dev stage:larva\|sex:not applicable\|tissue:brain\|biomaterial provider:Erin Schuman\|collected by:Lukas Anneser\|collection date:2017 02 01\|sample type:whole brain\|store cond:storage in trizol immediate extraction\|treatment:isolated\|replicate:1\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: larval and juvenile brain	A004	A004	RNA extraction from whole brain lysates polyA enrichment reverse transcription and amplification	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	SINGLE	ILLUMINA	NextSeq 500	SRP257630	20170201_5pdf_iso_S2_R1_001.fastq.gz	fastq	2182551927.0	16660472.0	20170201 5pdf iso S2 R1 001.fastq.gz	0:131.00 1:0	A:585229301;C:487317339;G:480857079;T:626932180;N:2216028	131	0	585229301	487317339	480857079	626932180	2216028	SRX8145084	SRS6507820	SRA1067479	Max Planck Institute for Brain Research\|Synaptic Plasticity	Max Planck Institute for Brain Research	1	0.94677		0.13688		0.6633		0.47121		145		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-04-21	Larval	Larval	Brain	Nervous System
59035	59035	SRR11577280	SRX8145083	SRS6507819	SRP257630	PRJNA627056	Impact of social isolation on brain transcriptome in zebrafish	PRJNA627056	Other	The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.	5 social 1	20170201 5dpf soc	breed:Konstanz Wildtype\|age:5 dpf\|dev stage:larva\|sex:not applicable\|tissue:brain\|biomaterial provider:Erin Schuman\|collected by:Lukas Anneser\|collection date:2017 02 01\|sample type:whole brain\|store cond:storage in trizol immediate extraction\|treatment:social\|replicate:1\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: larval and juvenile brain	A002	A002	RNA extraction from whole brain lysates polyA enrichment reverse transcription and amplification	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	SINGLE	ILLUMINA	NextSeq 500	SRP257630	20170201_5dpf_soc_S1_R1_001.fastq.gz	fastq	1713105557.0	13585484.0	20170201 5dpf soc S1 R1 001.fastq.gz	0:126.10 1:0	A:446628660;C:370803315;G:376374066;T:481602204;N:37697312	126	0	446628660	370803315	376374066	481602204	37697312	SRX8145083	SRS6507819	SRA1067479	Max Planck Institute for Brain Research\|Synaptic Plasticity	Max Planck Institute for Brain Research	1	0.94527		0.13591		0.66302		0.48385		151		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-04-21	Larval	Larval	Brain	Nervous System
66831	66831	SRR16674680	SRX12875367	SRS10818487	SRP343978	PRJNA776712	RNA seq analysis of nde1 mutant zebrafish	PRJNA776712	Other	We perform RNA sequencing to detect defferential expressed genes of nde1 deficiency mutant zebrafish brains compared to wild type.		brain nde1KO	strain:nde1KO\|dev stage:2mpf\|sex:male\|tissue:brain\|BioSampleModel:Model organism or animal	RNA seq of nde1 ko Danio rerio brain	B8	B8	RNA seq transcriptome librariy was prepared following TruSeqTM RNA sample preparation Kit from Illumina San Diego CA using 5g of total RNA. Shortly messenger RNA was isolated according to polyA selection method by oligodT beads and then fragmented by fragmentation buffer firstly. Secondly double stranded cDNA was synthesized using a SuperScript double stranded cDNA synthesis kit Invitrogen CA with random hexamer primers Illumina. Then the synthesized cDNA was subjected to end repair phosphorylation and A base addition according to Illuminas library construction protocol. Libraries were size selected for cDNA target fragments of 200300 bp on 2% Low Range Ultra Agarose followed by PCR amplified using Phusion DNA polymerase NEB for 15 PCR cycles. post quantified by TBS380 paired end RNA seq sequencing library was sequenced with the Illumina HiSeq 4000 2 150bp read length.	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP343978	B8.R1.fastq.gz B8.R2.fastq.gz	fastq fastq	6730442668.0	22286234.0	B8.R1.fastq.gz	0:151 1:151	A:1861252434;C:1503025278;G:1520846977;T:1845259260;N:58719	151	151	1861252434	1503025278	1520846977	1845259260	58719	SRX12875367	SRS10818487			Children's Hospital of Fudan University	2	0.94017	0.93241	0.13042	0.12914	0.68958	0.69132	0.48508	0.48284	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	trueseq	bulk	unknown	unknown	China	2021-11-01	Juvenile	Juvenile	Brain	Nervous System
66832	66832	SRR16674681	SRX12875366	SRS10818487	SRP343978	PRJNA776712	RNA seq analysis of nde1 mutant zebrafish	PRJNA776712	Other	We perform RNA sequencing to detect defferential expressed genes of nde1 deficiency mutant zebrafish brains compared to wild type.		brain nde1KO	strain:nde1KO\|dev stage:2mpf\|sex:male\|tissue:brain\|BioSampleModel:Model organism or animal	RNA seq of nde1 ko Danio rerio brain	B5	B5	RNA seq transcriptome librariy was prepared following TruSeqTM RNA sample preparation Kit from Illumina San Diego CA using 5g of total RNA. Shortly messenger RNA was isolated according to polyA selection method by oligodT beads and then fragmented by fragmentation buffer firstly. Secondly double stranded cDNA was synthesized using a SuperScript double stranded cDNA synthesis kit Invitrogen CA with random hexamer primers Illumina. Then the synthesized cDNA was subjected to end repair phosphorylation and A base addition according to Illuminas library construction protocol. Libraries were size selected for cDNA target fragments of 200300 bp on 2% Low Range Ultra Agarose followed by PCR amplified using Phusion DNA polymerase NEB for 15 PCR cycles. post quantified by TBS380 paired end RNA seq sequencing library was sequenced with the Illumina HiSeq 4000 2 150bp read length.	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP343978	B5.R1.fastq.gz B5.R2.fastq.gz	fastq fastq	7110747040.0	23545520.0	B5.R1.fastq.gz	0:151 1:151	A:1977355863;C:1580608625;G:1601936422;T:1950785340;N:60790	151	151	1977355863	1580608625	1601936422	1950785340	60790	SRX12875366	SRS10818487			Children's Hospital of Fudan University	2	0.93839	0.92891	0.1351	0.13386	0.69175	0.69424	0.49143	0.49249	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	trueseq	bulk	unknown	unknown	China	2021-11-01	Juvenile	Juvenile	Brain	Nervous System
66833	66833	SRR16674682	SRX12875365	SRS10818487	SRP343978	PRJNA776712	RNA seq analysis of nde1 mutant zebrafish	PRJNA776712	Other	We perform RNA sequencing to detect defferential expressed genes of nde1 deficiency mutant zebrafish brains compared to wild type.		brain nde1KO	strain:nde1KO\|dev stage:2mpf\|sex:male\|tissue:brain\|BioSampleModel:Model organism or animal	RNA seq of nde1 ko Danio rerio brain	B2	B2	RNA seq transcriptome librariy was prepared following TruSeqTM RNA sample preparation Kit from Illumina San Diego CA using 5g of total RNA. Shortly messenger RNA was isolated according to polyA selection method by oligodT beads and then fragmented by fragmentation buffer firstly. Secondly double stranded cDNA was synthesized using a SuperScript double stranded cDNA synthesis kit Invitrogen CA with random hexamer primers Illumina. Then the synthesized cDNA was subjected to end repair phosphorylation and A base addition according to Illuminas library construction protocol. Libraries were size selected for cDNA target fragments of 200300 bp on 2% Low Range Ultra Agarose followed by PCR amplified using Phusion DNA polymerase NEB for 15 PCR cycles. post quantified by TBS380 paired end RNA seq sequencing library was sequenced with the Illumina HiSeq 4000 2 150bp read length.	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP343978	B2.R1.fastq.gz B2.R2.fastq.gz	fastq fastq	8547028538.0	28301419.0	B2.R1.fastq.gz	0:151 1:151	A:2378598350;C:1891330158;G:1921569124;T:2355455648;N:75258	151	151	2378598350	1891330158	1921569124	2355455648	75258	SRX12875365	SRS10818487			Children's Hospital of Fudan University	2	0.94029	0.92534	0.13616	0.13373	0.68949	0.69219	0.47948	0.48398	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	trueseq	bulk	unknown	unknown	China	2021-11-01	Juvenile	Juvenile	Brain	Nervous System
66834	66834	SRR16674683	SRX12875364	SRS10818488	SRP343978	PRJNA776712	RNA seq analysis of nde1 mutant zebrafish	PRJNA776712	Other	We perform RNA sequencing to detect defferential expressed genes of nde1 deficiency mutant zebrafish brains compared to wild type.		brain WT	strain:TU\|dev stage:2mpf\|sex:male\|tissue:brain\|BioSampleModel:Model organism or animal	RNA seq of Danio rerio brain	B7	B7	RNA seq transcriptome librariy was prepared following TruSeqTM RNA sample preparation Kit from Illumina San Diego CA using 5g of total RNA. Shortly messenger RNA was isolated according to polyA selection method by oligodT beads and then fragmented by fragmentation buffer firstly. Secondly double stranded cDNA was synthesized using a SuperScript double stranded cDNA synthesis kit Invitrogen CA with random hexamer primers Illumina. Then the synthesized cDNA was subjected to end repair phosphorylation and A base addition according to Illuminas library construction protocol. Libraries were size selected for cDNA target fragments of 200300 bp on 2% Low Range Ultra Agarose followed by PCR amplified using Phusion DNA polymerase NEB for 15 PCR cycles. post quantified by TBS380 paired end RNA seq sequencing library was sequenced with the Illumina HiSeq 4000 2 150bp read length.	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP343978	B7.R1.fastq.gz B7.R2.fastq.gz	fastq fastq	6685388496.0	22137048.0	B7.R1.fastq.gz	0:151 1:151	A:1860264075;C:1483831512;G:1503216220;T:1838014556;N:62133	151	151	1860264075	1483831512	1503216220	1838014556	62133	SRX12875364	SRS10818488			Children's Hospital of Fudan University	2	0.94254	0.93341	0.13834	0.13689	0.69355	0.69755	0.49201	0.49217	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	trueseq	bulk	unknown	unknown	China	2021-11-01	Juvenile	Juvenile	Brain	Nervous System
66835	66835	SRR16674684	SRX12875363	SRS10818488	SRP343978	PRJNA776712	RNA seq analysis of nde1 mutant zebrafish	PRJNA776712	Other	We perform RNA sequencing to detect defferential expressed genes of nde1 deficiency mutant zebrafish brains compared to wild type.		brain WT	strain:TU\|dev stage:2mpf\|sex:male\|tissue:brain\|BioSampleModel:Model organism or animal	RNA seq of Danio rerio brain	B4	B4	RNA seq transcriptome librariy was prepared following TruSeqTM RNA sample preparation Kit from Illumina San Diego CA using 5g of total RNA. Shortly messenger RNA was isolated according to polyA selection method by oligodT beads and then fragmented by fragmentation buffer firstly. Secondly double stranded cDNA was synthesized using a SuperScript double stranded cDNA synthesis kit Invitrogen CA with random hexamer primers Illumina. Then the synthesized cDNA was subjected to end repair phosphorylation and A base addition according to Illuminas library construction protocol. Libraries were size selected for cDNA target fragments of 200300 bp on 2% Low Range Ultra Agarose followed by PCR amplified using Phusion DNA polymerase NEB for 15 PCR cycles. post quantified by TBS380 paired end RNA seq sequencing library was sequenced with the Illumina HiSeq 4000 2 150bp read length.	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP343978	B4.R1.fastq.gz B4.R2.fastq.gz	fastq fastq	7546711220.0	24989110.0	B4.R1.fastq.gz	0:151 1:151	A:2099092660;C:1670910951;G:1699960602;T:2076680479;N:66528	151	151	2099092660	1670910951	1699960602	2076680479	66528	SRX12875363	SRS10818488			Children's Hospital of Fudan University	2	0.94254	0.92745	0.13347	0.13114	0.69225	0.69424	0.48413	0.49124	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	trueseq	bulk	unknown	unknown	China	2021-11-01	Juvenile	Juvenile	Brain	Nervous System
66836	66836	SRR16674685	SRX12875362	SRS10818488	SRP343978	PRJNA776712	RNA seq analysis of nde1 mutant zebrafish	PRJNA776712	Other	We perform RNA sequencing to detect defferential expressed genes of nde1 deficiency mutant zebrafish brains compared to wild type.		brain WT	strain:TU\|dev stage:2mpf\|sex:male\|tissue:brain\|BioSampleModel:Model organism or animal	RNA seq of Danio rerio brain	B1	B1	RNA seq transcriptome librariy was prepared following TruSeqTM RNA sample preparation Kit from Illumina San Diego CA using 5g of total RNA. Shortly messenger RNA was isolated according to polyA selection method by oligodT beads and then fragmented by fragmentation buffer firstly. Secondly double stranded cDNA was synthesized using a SuperScript double stranded cDNA synthesis kit Invitrogen CA with random hexamer primers Illumina. Then the synthesized cDNA was subjected to end repair phosphorylation and A base addition according to Illuminas library construction protocol. Libraries were size selected for cDNA target fragments of 200300 bp on 2% Low Range Ultra Agarose followed by PCR amplified using Phusion DNA polymerase NEB for 15 PCR cycles. post quantified by TBS380 paired end RNA seq sequencing library was sequenced with the Illumina HiSeq 4000 2 150bp read length.	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP343978	B1.R1.fastq.gz B1.R2.fastq.gz	fastq fastq	6758464342.0	22379021.0	B1.R1.fastq.gz	0:151 1:151	A:1881676275;C:1495234309;G:1519420774;T:1862074223;N:58761	151	151	1881676275	1495234309	1519420774	1862074223	58761	SRX12875362	SRS10818488			Children's Hospital of Fudan University	2	0.94263	0.92421	0.13676	0.13324	0.69505	0.697	0.48389	0.48239	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	trueseq	bulk	unknown	unknown	China	2021-11-02	Juvenile	Juvenile	Brain	Nervous System
68554	68554	SRR18010263	SRX14164590	SRS11988750	SRP359660	PRJNA806676	Transcriptome analysis of nomo1 homologous deficiency zebrafish	PRJNA806676	Other	This analysis revealed transcriptome level changes of brain of nomo1 homologous deficiency zebrafish.		nomo1	strain:nomo / \|dev stage:2mpf\|sex:male\|tissue:brain\|BioSampleModel:Model organism or animal	RNA seq of Danio rario: nomo1	nomo	nomo	RNA seq transcriptome librariy was prepared following TruSeqTM RNA sample preparation Kit from Illumina San Diego CA using 5g of total RNA. Shortly messenger RNA was isolated according to polyA selection method by oligodT beads and then fragmented by fragmentation buffer firstly. Secondly double stranded cDNA was synthesized using a SuperScript double stranded cDNA synthesis kit Invitrogen CA with random hexamer primers Illumina. Then the synthesized cDNA was subjected to end repair phosphorylation and A base addition according to Illuminas library construction protocol. Libraries were size selected for cDNA target fragments of 200300 bp on 2% Low Range Ultra Agarose followed by PCR amplified using Phusion DNA polymerase NEB for 15 PCR cycles. post quantified by TBS380 paired end RNA seq sequencing library was sequenced with the Illumina HiSeq 4000 2 150bp read length.	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP359660	NOMO_1.fq.gz NOMO_2.fq.gz	fastq fastq	7423945800.0	24746486.0	NOMO 1.fq.gz	0:150 1:150	A:2079187833;C:1643658691;G:1652867282;T:2048199003;N:32991	150	150	2079187833	1643658691	1652867282	2048199003	32991	SRX14164590	SRS11988750			Children's Hospital of Fudan University	2	0.93796	0.93625	0.16379	0.1632	0.69643	0.69842	0.48865	0.48976	150	150	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	trueseq	bulk	unknown	unknown	China	2022-02-13	Juvenile	Juvenile	Brain	Nervous System
68555	68555	SRR18010264	SRX14164589	SRS11988749	SRP359660	PRJNA806676	Transcriptome analysis of nomo1 homologous deficiency zebrafish	PRJNA806676	Other	This analysis revealed transcriptome level changes of brain of nomo1 homologous deficiency zebrafish.		WT	strain:tu\|dev stage:2mpf\|sex:male\|tissue:brain\|BioSampleModel:Model organism or animal	RNA seq of Danio rario: TU	TU	TU	RNA seq transcriptome librariy was prepared following TruSeqTM RNA sample preparation Kit from Illumina San Diego CA using 5g of total RNA. Shortly messenger RNA was isolated according to polyA selection method by oligodT beads and then fragmented by fragmentation buffer firstly. Secondly double stranded cDNA was synthesized using a SuperScript double stranded cDNA synthesis kit Invitrogen CA with random hexamer primers Illumina. Then the synthesized cDNA was subjected to end repair phosphorylation and A base addition according to Illuminas library construction protocol. Libraries were size selected for cDNA target fragments of 200300 bp on 2% Low Range Ultra Agarose followed by PCR amplified using Phusion DNA polymerase NEB for 15 PCR cycles. post quantified by TBS380 paired end RNA seq sequencing library was sequenced with the Illumina HiSeq 4000 2 150bp read length.	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP359660	TU_1.fq.gz TU_2.fq.gz	fastq fastq	7981027200.0	26603424.0	TU 1.fq.gz	0:150 1:150	A:2246332345;C:1756444706;G:1767372264;T:2210842856;N:35029	150	150	2246332345	1756444706	1767372264	2210842856	35029	SRX14164589	SRS11988749			Children's Hospital of Fudan University	2	0.93375	0.93291	0.17081	0.17028	0.69755	0.69875	0.48942	0.49405	150	150	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	trueseq	bulk	unknown	unknown	China	2022-02-13	Juvenile	Juvenile	Brain	Nervous System

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;