metadata: run_metadata: 10 rows where experiment.library_selection = "RT-PCR", experiment.library_source = "TRANSCRIPTOMIC" and tissue

10 rows where experiment.library_selection = "RT-PCR", experiment.library_source = "TRANSCRIPTOMIC" and tissue_curation = "Heart"

descending

Link	rowid ▼	run.accession	experiment.accession	sample.accession	study.accession	bioproject	study.title	study.alias	study.type	study.abstract	sample.title	sample.alias	sample.attributes	experiment.title	experiment.alias	experiment.library_name	experiment.design_description	experiment.library_strategy	experiment.library_source	experiment.library_selection	experiment.library_layout	experiment.platform	experiment.instrument_model	experiment.study_ref	run.attributes	run.filename	run.semantic_name	run.total_bases	run.total_spots	run.alias	run.read_lengths	run.base_counts	run.r1_length	run.r2_length	run.Acount	run.Ccount	run.Gcount	run.Tcount	run.Ncount	run.experiment	run.pool_member	submission.accession	submission.srasource	submission.bioprojectsource	seqdetective.n_mates	seqdetective.mapping_rate.mate1	seqdetective.mapping_rate.mate2	seqdetective.nofeature_rate.mate1	seqdetective.nofeature_rate.mate2	seqdetective.sparsity.mate1	seqdetective.sparsity.mate2	seqdetective.pos_strand_rate.mate1	seqdetective.pos_strand_rate.mate2	seqdetective.readlen.mate1	seqdetective.readlen.mate2	seqdetective.judgement.mate1	seqdetective.judgement.mate2	seqdetective.judgement.reason	platform_family	instrument_generation	read_bias	selection_class	prep_kit	sc_or_bulk	tech_class	technology	submission.bioprojectsource.country	earliest_date	devstage_curation	devstage_curation_coarse	tissue_curation	tissue_curation_coarse
59387	59387	SRR11869421	SRX8419453	SRS6730997	SRP265157	PRJNA635689	Identification of potentially relevant genes for pathological cardiac hypertrophy	PRJNA635689	Other	Identification of potentially relevant genes for excessive exercise induced pathological cardiac hypertrophy in zebrafish	RNAseq	ex3	strain:not aplicable\|isolate:not collected\|breed:AB\|cultivar:not collected\|ecotype:not collected\|age:6 mpf\|dev stage:not collected\|sex:male\|tissue:heart\|biomaterial provider:hunan normal university\|genotype:WT\|phenotype:Pathological cardiac hypertrophy\|replicates:6\|BioSampleModel:Model organism or animal	RNAseq of zebrafish : heart	EX H 3	EX H 3	RNA seq for Pathologically hypertrophied heart	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP265157		EX_H_3_R1.fastq.gz EX_H_3_R2.fastq.gz	fastq fastq	6259636144.0	20727272.0	EX H 3 R1.fastq.gz	0:151 1:151	A:1778280447;C:1363197355;G:1403049077;T:1715079291;N:29974	151	151	1778280447	1363197355	1403049077	1715079291	29974	SRX8419453	SRS6730997	SRA1080960	Hunan Normal University\|college of physical education	Hunan Normal University	2	0.92733	0.88813	0.0791	0.07597	0.76297	0.76771	0.50252	0.50158	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	other	unknown	bulk	unknown	unknown	China	2020-05-28	Adult	Adult	Heart	Cardiovascular System
59388	59388	SRR11869422	SRX8419452	SRS6730996	SRP265157	PRJNA635689	Identification of potentially relevant genes for pathological cardiac hypertrophy	PRJNA635689	Other	Identification of potentially relevant genes for excessive exercise induced pathological cardiac hypertrophy in zebrafish	RNAseq	ex2	strain:not aplicable\|isolate:not collected\|breed:AB\|cultivar:not collected\|ecotype:not collected\|age:6 mpf\|dev stage:not collected\|sex:male\|tissue:heart\|biomaterial provider:hunan normal university\|genotype:WT\|phenotype:Pathological cardiac hypertrophy\|replicates:5\|BioSampleModel:Model organism or animal	RNAseq of zebrafish : heart	EX H 2	EX H 2	RNA seq for Pathologically hypertrophied heart	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP265157		EX_H_2_R1.fastq.gz EX_H_2_R2.fastq.gz	fastq fastq	8103625192.0	26833196.0	EX H 2 R1.fastq.gz	0:151 1:151	A:2245093216;C:1807855840;G:1857514326;T:2193123949;N:37861	151	151	2245093216	1807855840	1857514326	2193123949	37861	SRX8419452	SRS6730996	SRA1080960	Hunan Normal University\|college of physical education	Hunan Normal University	2	0.92984	0.89009	0.06796	0.06486	0.76631	0.77163	0.4919	0.49814	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	other	unknown	bulk	unknown	unknown	China	2020-05-28	Adult	Adult	Heart	Cardiovascular System
59389	59389	SRR11869423	SRX8419451	SRS6730995	SRP265157	PRJNA635689	Identification of potentially relevant genes for pathological cardiac hypertrophy	PRJNA635689	Other	Identification of potentially relevant genes for excessive exercise induced pathological cardiac hypertrophy in zebrafish	RNAseq	ex1	strain:not aplicable\|isolate:not collected\|breed:AB\|cultivar:not collected\|ecotype:not collected\|age:6 mpf\|dev stage:not collected\|sex:male\|tissue:heart\|biomaterial provider:hunan normal university\|genotype:WT\|phenotype:Pathological cardiac hypertrophy\|replicates:4\|BioSampleModel:Model organism or animal	RNAseq of zebrafish : heart	EX H 1	EX H 1	RNA seq for Pathologically hypertrophied heart	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP265157		EX_H_1_R1.fastq.gz EX_H_1_R2.fastq.gz	fastq fastq	6451974810.0	21364155.0	EX H 1 R1.fastq.gz	0:151 1:151	A:1790936245;C:1436034787;G:1479727207;T:1745254376;N:22195	151	151	1790936245	1436034787	1479727207	1745254376	22195	SRX8419451	SRS6730995	SRA1080960	Hunan Normal University\|college of physical education	Hunan Normal University	2	0.93365	0.90193	0.07267	0.07043	0.77778	0.78121	0.49987	0.50115	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	other	unknown	bulk	unknown	unknown	China	2020-05-28	Adult	Adult	Heart	Cardiovascular System
59390	59390	SRR11869424	SRX8419450	SRS6730994	SRP265157	PRJNA635689	Identification of potentially relevant genes for pathological cardiac hypertrophy	PRJNA635689	Other	Identification of potentially relevant genes for excessive exercise induced pathological cardiac hypertrophy in zebrafish	RNAseq	con3	strain:not aplicable\|isolate:not collected\|breed:AB\|cultivar:not collected\|ecotype:not collected\|age:6 mpf\|dev stage:not collected\|sex:male\|tissue:heart\|biomaterial provider:hunan normal university\|genotype:WT\|phenotype:normal\|replicates:3\|BioSampleModel:Model organism or animal	RNAseq of zebrafish : heart	CON H 3	CON H 3	RNA seq for normal heart	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP265157		CON_H_3_R1.fastq.gz CON_H_3_R2.fastq.gz	fastq fastq	6526853596.0	21612098.0	CON H 3 R1.fastq.gz	0:151 1:151	A:1812103278;C:1452775339;G:1489864278;T:1772088823;N:21878	151	151	1812103278	1452775339	1489864278	1772088823	21878	SRX8419450	SRS6730994	SRA1080960	Hunan Normal University\|college of physical education	Hunan Normal University	2	0.93603	0.91137	0.07069	0.06842	0.77133	0.77435	0.52249	0.52352	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	other	unknown	bulk	unknown	unknown	China	2020-05-28	Adult	Adult	Heart	Cardiovascular System
59391	59391	SRR11869425	SRX8419449	SRS6730993	SRP265157	PRJNA635689	Identification of potentially relevant genes for pathological cardiac hypertrophy	PRJNA635689	Other	Identification of potentially relevant genes for excessive exercise induced pathological cardiac hypertrophy in zebrafish	RNAseq	con2	strain:not aplicable\|isolate:not collected\|breed:AB\|cultivar:not collected\|ecotype:not collected\|age:6 mpf\|dev stage:not collected\|sex:male\|tissue:heart\|biomaterial provider:hunan normal university\|genotype:WT\|phenotype:normal\|replicates:2\|BioSampleModel:Model organism or animal	RNAseq of zebrafish : heart	CON H 2	CON H 2	RNA seq for normal heart	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP265157		CON_H_2_R1.fastq.gz CON_H_2_R2.fastq.gz	fastq fastq	6367520510.0	21084505.0	CON H 2 R1.fastq.gz	0:151 1:151	A:1744234790;C:1437029037;G:1478909299;T:1707323187;N:24197	151	151	1744234790	1437029037	1478909299	1707323187	24197	SRX8419449	SRS6730993	SRA1080960	Hunan Normal University\|college of physical education	Hunan Normal University	2	0.93818	0.91397	0.07325	0.071	0.77429	0.77656	0.53623	0.53447	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	other	unknown	bulk	unknown	unknown	China	2020-05-28	Adult	Adult	Heart	Cardiovascular System
59392	59392	SRR11869426	SRX8419448	SRS6730992	SRP265157	PRJNA635689	Identification of potentially relevant genes for pathological cardiac hypertrophy	PRJNA635689	Other	Identification of potentially relevant genes for excessive exercise induced pathological cardiac hypertrophy in zebrafish	RNAseq	con1	strain:not aplicable\|isolate:not collected\|breed:AB\|cultivar:not collected\|ecotype:not collected\|age:6 mpf\|dev stage:not collected\|sex:male\|tissue:heart\|biomaterial provider:hunan normal university\|genotype:WT\|phenotype:normal\|replicates:1\|BioSampleModel:Model organism or animal	RNAseq of zebrafish : heart	CON H 1	CON H 1	RNA seq for normal heart	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP265157		CON_H_1_R1.fastq.gz CON_H_1_R2.fastq.gz	fastq fastq	6359506336.0	21057968.0	CON H 1 R1.fastq.gz	0:151 1:151	A:1739787665;C:1437042647;G:1482458254;T:1700195714;N:22056	151	151	1739787665	1437042647	1482458254	1700195714	22056	SRX8419448	SRS6730992	SRA1080960	Hunan Normal University\|college of physical education	Hunan Normal University	2	0.93392	0.90778	0.07115	0.06926	0.76814	0.77108	0.46067	0.49942	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	other	unknown	bulk	unknown	unknown	China	2020-05-28	Adult	Adult	Heart	Cardiovascular System
66745	66745	SRR16530663	SRX12733276	SRS10681588	SRP342649	PRJNA773625	loft ventricle RNAseq	PRJNA773625	Other	Cardiac looping and trabeculation are key processes during cardiac chamber maturation and alteration of these processes frequently causes congenital heart defects. Here we report the isolation cloning and characterization of the proprotein convertase furina from the cardiovascular mutant loft in zebrafish and thus establish its critical role in heart looping and trabecular development. Although heart defects are previously reported in zebrafish and mouse furin mutants it remains unclear what are the targets of Furin in the heart. This work presents a new layer of post translational modulation of Notch1b proteins by Furina during zebrafish cardiac looping and trabeculation and mutations in the Furina Notch1b axis may shed light on the genetic basis of congenital heart diseases in humans.	RNAseq of zebrafish heart	loft mutant RNAseq rep2	strain:Tu\|dev stage:3 dpf determined\|tissue:ventricle\|genotype:loft mutant\|replicate:biological replicate 2\|BioSampleModel:Model organism or animal	RNAseq of zebrafish heart	loft mutant RNAseq rep2	loft mutant RNAseq rep2	The cDNA libraries were constructed by MALBAC method KT110700424 Yikon Genomics	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	PAIRED	ILLUMINA	Illumina HiSeq 2500	SRP342649	assembly:danRer7	loft_mutant_RNAseq_rep2.1.bam loft_mutant_RNAseq_rep2.2.bam	bam bam	4184284762.0	20714281.0	loft mutant RNAseq rep2.1.bam	0:101 1:101	A:1235933017;C:598023900;G:852833672;T:1497442499;N:51674	101	101	1235933017	598023900	852833672	1497442499	51674	SRX12733276	SRS10681588	SRA1315131	Peking University\|Institute of Molecular Medicine	Peking University	2	0.4825	0.50527	0.2448	0.25451	0.87288	0.87888	0.46562	0.45703	101	101	B	B	biological fallback assumption	illumina	hiseq_era	unknown	other	unknown	bulk	unknown	unknown	China	2021-10-22	Larval	Larval	Heart	Cardiovascular System
66746	66746	SRR16530664	SRX12733275	SRS10681587	SRP342649	PRJNA773625	loft ventricle RNAseq	PRJNA773625	Other	Cardiac looping and trabeculation are key processes during cardiac chamber maturation and alteration of these processes frequently causes congenital heart defects. Here we report the isolation cloning and characterization of the proprotein convertase furina from the cardiovascular mutant loft in zebrafish and thus establish its critical role in heart looping and trabecular development. Although heart defects are previously reported in zebrafish and mouse furin mutants it remains unclear what are the targets of Furin in the heart. This work presents a new layer of post translational modulation of Notch1b proteins by Furina during zebrafish cardiac looping and trabeculation and mutations in the Furina Notch1b axis may shed light on the genetic basis of congenital heart diseases in humans.	RNAseq of zebrafish heart	loft mutant RNAseq rep1	strain:Tu\|dev stage:3 dpf determined\|tissue:ventricle\|genotype:loft mutant\|replicate:biological replicate 1\|BioSampleModel:Model organism or animal	RNAseq of zebrafish heart	loft mutant RNAseq rep1	loft mutant RNAseq rep1	The cDNA libraries were constructed by MALBAC method KT110700424 Yikon Genomics	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	PAIRED	ILLUMINA	Illumina HiSeq 2500	SRP342649	assembly:danRer7	loft_mutant_RNAseq_rep1.1.bam loft_mutant_RNAseq_rep1.2.bam	bam bam	4349194532.0	21530666.0	loft mutant RNAseq rep1.1.bam	0:101 1:101	A:1285307324;C:607005074;G:876055199;T:1580773245;N:53690	101	101	1285307324	607005074	876055199	1580773245	53690	SRX12733275	SRS10681587	SRA1315131	Peking University\|Institute of Molecular Medicine	Peking University	2	0.50395	0.50527	0.2163	0.21684	0.87444	0.88371	0.47374	0.46918	101	101	B	B	biological fallback assumption	illumina	hiseq_era	unknown	other	unknown	bulk	unknown	unknown	China	2021-10-22	Larval	Larval	Heart	Cardiovascular System
66747	66747	SRR16530665	SRX12733274	SRS10681586	SRP342649	PRJNA773625	loft ventricle RNAseq	PRJNA773625	Other	Cardiac looping and trabeculation are key processes during cardiac chamber maturation and alteration of these processes frequently causes congenital heart defects. Here we report the isolation cloning and characterization of the proprotein convertase furina from the cardiovascular mutant loft in zebrafish and thus establish its critical role in heart looping and trabecular development. Although heart defects are previously reported in zebrafish and mouse furin mutants it remains unclear what are the targets of Furin in the heart. This work presents a new layer of post translational modulation of Notch1b proteins by Furina during zebrafish cardiac looping and trabeculation and mutations in the Furina Notch1b axis may shed light on the genetic basis of congenital heart diseases in humans.	RNAseq of zebrafish heart	loft sibling RNAseq rep2	strain:Tu\|dev stage:3 dpf determined\|tissue:ventricle\|genotype:loft sibling\|replicate:biological replicate 2\|BioSampleModel:Model organism or animal	RNAseq of zebrafish heart	loft sibling RNAseq rep2	loft sibling RNAseq rep2	The cDNA libraries were constructed by MALBAC method KT110700424 Yikon Genomics	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	PAIRED	ILLUMINA	Illumina HiSeq 2500	SRP342649	assembly:danRer7	loft_sibling_RNAseq_rep2.1.bam loft_sibling_RNAseq_rep2.2.bam	bam bam	3901869168.0	19316184.0	loft sibling RNAseq rep2.1.bam	0:101 1:101	A:1145110581;C:555289006;G:798238595;T:1403183360;N:47626	101	101	1145110581	555289006	798238595	1403183360	47626	SRX12733274	SRS10681586	SRA1315131	Peking University\|Institute of Molecular Medicine	Peking University	2	0.47753	0.48927	0.20347	0.20928	0.86994	0.87726	0.46911	0.43318	101	101	B	B	biological fallback assumption	illumina	hiseq_era	unknown	other	unknown	bulk	unknown	unknown	China	2021-10-22	Larval	Larval	Heart	Cardiovascular System
66748	66748	SRR16530666	SRX12733273	SRS10681585	SRP342649	PRJNA773625	loft ventricle RNAseq	PRJNA773625	Other	Cardiac looping and trabeculation are key processes during cardiac chamber maturation and alteration of these processes frequently causes congenital heart defects. Here we report the isolation cloning and characterization of the proprotein convertase furina from the cardiovascular mutant loft in zebrafish and thus establish its critical role in heart looping and trabecular development. Although heart defects are previously reported in zebrafish and mouse furin mutants it remains unclear what are the targets of Furin in the heart. This work presents a new layer of post translational modulation of Notch1b proteins by Furina during zebrafish cardiac looping and trabeculation and mutations in the Furina Notch1b axis may shed light on the genetic basis of congenital heart diseases in humans.	RNAseq of zebrafish heart	loft sibling RNAseq rep1	strain:Tu\|dev stage:3 dpf determined\|tissue:ventricle\|genotype:loft sibling\|replicate:biological replicate 1\|BioSampleModel:Model organism or animal	RNAseq of zebrafish heart	loft sibling RNAseq rep1	loft sibling RNAseq rep1	The cDNA libraries were constructed by MALBAC method KT110700424 Yikon Genomics	RNA-Seq	TRANSCRIPTOMIC	RT-PCR	PAIRED	ILLUMINA	Illumina HiSeq 2500	SRP342649	assembly:danRer7	loft_sibling_RNAseq_rep1.1.bam loft_sibling_RNAseq_rep1.2.bam	bam bam	3973568260.0	19671130.0	loft sibling RNAseq rep1.1.bam	0:101 1:101	A:1171529555;C:572236920;G:816914171;T:1412839393;N:48221	101	101	1171529555	572236920	816914171	1412839393	48221	SRX12733273	SRS10681585	SRA1315131	Peking University\|Institute of Molecular Medicine	Peking University	2	0.47895	0.47714	0.25104	0.24998	0.86841	0.87568	0.46945	0.47273	101	101	B	B	biological fallback assumption	illumina	hiseq_era	unknown	other	unknown	bulk	unknown	unknown	China	2021-10-22	Larval	Larval	Heart	Cardiovascular System

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;