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run_metadata

45 rows where experiment.library_selection = "RANDOM PCR", technology = "unknown" and tissue_curation_coarse = "Surface Structure"

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experiment.platform 2

experiment.library_strategy 2

experiment.library_layout 2

tissue_curation_coarse 1

  • Surface Structure · 45 ✖

tissue_curation 1

technology 1

  • unknown · 45 ✖

experiment.library_source 1

experiment.library_selection 1

  • RANDOM PCR · 45 ✖

devstage_curation_coarse 1

devstage_curation 1

Link rowid ▼ run.accession experiment.accession sample.accession study.accession bioproject study.title study.alias study.type study.abstract study.attributes study.PMIDs sample.description sample.title sample.alias sample.centername sample.attributes GEOsample.title GEOsample.dataprocessing GEOsample.source GEOsample.treatmentprotocol GEOsample.extractprotocol GEOsample.growthprotocol GEOsample.characteristics GEOsample.accession experiment.title experiment.alias experiment.library_name experiment.design_description experiment.library_construction_protocol experiment.attributes experiment.library_strategy experiment.library_source experiment.library_selection experiment.library_layout experiment.platform experiment.instrument_model experiment.spot_descriptor experiment.study_ref run.title run.attributes run.filename run.semantic_name run.total_bases run.total_spots run.alias run.read_lengths run.base_counts run.r1_length run.r2_length run.r3_length run.r4_length run.Acount run.Ccount run.Gcount run.Tcount run.Ncount run.experiment run.pool_member submission.accession submission.srasource submission.bioprojectsource seqdetective.n_mates seqdetective.mapping_rate.mate1 seqdetective.mapping_rate.mate2 seqdetective.nofeature_rate.mate1 seqdetective.nofeature_rate.mate2 seqdetective.sparsity.mate1 seqdetective.sparsity.mate2 seqdetective.pos_strand_rate.mate1 seqdetective.pos_strand_rate.mate2 seqdetective.readlen.mate1 seqdetective.readlen.mate2 seqdetective.judgement.mate1 seqdetective.judgement.mate2 seqdetective.judgement.reason platform_family instrument_generation read_bias selection_class prep_kit sc_or_bulk tech_class technology tech_variant submission.bioprojectsource.country earliest_date devstage_curation devstage_curation_coarse tissue_curation tissue_curation_coarse
29840 29840 SRR27586310 SRX23255332 SRS20157331 SRP484115 PRJNA1065252 Study of spermine on prednisolone treated zebrafish larvae PRJNA1065252 Other RNA sequencing was conducted in zebrafish larvae received prednisolone PN only OP group and PN with spermine SPM group aiming at revealing the key molecular mediating the anti osteoporosis effect of spermine.     SPM3 SPM3 SPM3   strain:Tubingen line|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:7 day|dev stage:larvae|collection date:2022 11 21|geo loc name:China:Shanghai|sex:not determined|tissue:whole body|birth date:2022 11 14|birth location:China:Shanghai|health state:OP+SPM|sample type:Experimental|treatment:prednisol1+spermine|replicate:biological replicate3|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish: larvae SPM3 SPM3 Total RNA was extracted and RNA integrity was assessed by agarose gel electrophoresis purity was checked using a Nanodrop OD260/280 ratio between 1.8 2.2 and quantified with Qubit. The samples were sequenced using the Illumina NovaSeq 6000 platform. The Skewer software trimmed splice sequences and low quality fragments.     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP484115     SPM3_221124N_S30_L004_R1_001.fastq.gz SPM3_221124N_S30_L004_R2_001.fastq.gz fastq fastq 10885465576.0 36044588.0 SPM3 221124N S30 L004 R1 001.fastq.gz 0:151 1:151 A:2964982971;C:2446827592;G:2632817265;T:2840605296;N:232452 151 151     2964982971 2446827592 2632817265 2840605296 232452 SRX23255332 SRS20157331     Shanghai Ninth People's Hospital, Shanghai Jiao Tong University School of Medicine                       B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2024-01-17 Larval Larval Trunk Surface Structure
29841 29841 SRR27586311 SRX23255331 SRS20157334 SRP484115 PRJNA1065252 Study of spermine on prednisolone treated zebrafish larvae PRJNA1065252 Other RNA sequencing was conducted in zebrafish larvae received prednisolone PN only OP group and PN with spermine SPM group aiming at revealing the key molecular mediating the anti osteoporosis effect of spermine.     SPM2 SPM2 SPM2   strain:Tubingen line|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:7 day|dev stage:larvae|collection date:2022 11 21|geo loc name:China:Shanghai|sex:not determined|tissue:whole body|birth date:2022 11 14|birth location:China:Shanghai|health state:OP+SPM|sample type:Experimental|treatment:prednisol1+spermine|replicate:biological replicate2|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish: larvae SPM2 SPM2 Total RNA was extracted and RNA integrity was assessed by agarose gel electrophoresis purity was checked using a Nanodrop OD260/280 ratio between 1.8 2.2 and quantified with Qubit. The samples were sequenced using the Illumina NovaSeq 6000 platform. The Skewer software trimmed splice sequences and low quality fragments.     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP484115     SPM2_221124N_S29_L004_R1_001.fastq.gz SPM2_221124N_S29_L004_R2_001.fastq.gz fastq fastq 8024508138.0 26571219.0 SPM2 221124N S29 L004 R1 001.fastq.gz 0:151 1:151 A:2183023143;C:1799931538;G:1940440841;T:2100940639;N:171977 151 151     2183023143 1799931538 1940440841 2100940639 171977 SRX23255331 SRS20157334     Shanghai Ninth People's Hospital, Shanghai Jiao Tong University School of Medicine                       B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2024-01-17 Larval Larval Trunk Surface Structure
29842 29842 SRR27586312 SRX23255330 SRS20157332 SRP484115 PRJNA1065252 Study of spermine on prednisolone treated zebrafish larvae PRJNA1065252 Other RNA sequencing was conducted in zebrafish larvae received prednisolone PN only OP group and PN with spermine SPM group aiming at revealing the key molecular mediating the anti osteoporosis effect of spermine.     SPM1 SPM1 SPM1   strain:Tubingen line|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:7 day|dev stage:larvae|collection date:2022 11 21|geo loc name:China:Shanghai|sex:not determined|tissue:whole body|birth date:2022 11 14|birth location:China:Shanghai|health state:OP+SPM|sample type:Experimental|treatment:prednisol1+spermine|replicate:biological replicate1|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish: larvae SPM1 SPM1 Total RNA was extracted and RNA integrity was assessed by agarose gel electrophoresis purity was checked using a Nanodrop OD260/280 ratio between 1.8 2.2 and quantified with Qubit. The samples were sequenced using the Illumina NovaSeq 6000 platform. The Skewer software trimmed splice sequences and low quality fragments.     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP484115     SPM1_221124N_S28_L004_R1_001.fastq.gz SPM1_221124N_S28_L004_R2_001.fastq.gz fastq fastq 8569531464.0 28375932.0 SPM1 221124N S28 L004 R1 001.fastq.gz 0:151 1:151 A:2324124676;C:1912685666;G:2084412340;T:2248125150;N:183632 151 151     2324124676 1912685666 2084412340 2248125150 183632 SRX23255330 SRS20157332     Shanghai Ninth People's Hospital, Shanghai Jiao Tong University School of Medicine                       B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2024-01-17 Larval Larval Trunk Surface Structure
29843 29843 SRR27586313 SRX23255329 SRS20157333 SRP484115 PRJNA1065252 Study of spermine on prednisolone treated zebrafish larvae PRJNA1065252 Other RNA sequencing was conducted in zebrafish larvae received prednisolone PN only OP group and PN with spermine SPM group aiming at revealing the key molecular mediating the anti osteoporosis effect of spermine.     OP3 OP3 OP3   strain:Tubingen line|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:7 day|dev stage:larvae|collection date:2022 11 21|geo loc name:China:Shanghai|sex:not determined|tissue:whole body|birth date:2022 11 14|birth location:China:Shanghai|health state:OP|sample type:Control|treatment:prednisol1|replicate:biological replicate3|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish: larvae OP3 OP3 Total RNA was extracted and RNA integrity was assessed by agarose gel electrophoresis purity was checked using a Nanodrop OD260/280 ratio between 1.8 2.2 and quantified with Qubit. The samples were sequenced using the Illumina NovaSeq 6000 platform. The Skewer software trimmed splice sequences and low quality fragments.     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP484115     OP3_221124N_S27_L004_R1_001.fastq.gz OP3_221124N_S27_L004_R2_001.fastq.gz fastq fastq 7567534120.0 25058060.0 OP3 221124N S27 L004 R1 001.fastq.gz 0:151 1:151 A:2053939655;C:1700201614;G:1849434461;T:1963797744;N:160646 151 151     2053939655 1700201614 1849434461 1963797744 160646 SRX23255329 SRS20157333     Shanghai Ninth People's Hospital, Shanghai Jiao Tong University School of Medicine                       B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2024-01-17 Larval Larval Trunk Surface Structure
29844 29844 SRR27586314 SRX23255328 SRS20157330 SRP484115 PRJNA1065252 Study of spermine on prednisolone treated zebrafish larvae PRJNA1065252 Other RNA sequencing was conducted in zebrafish larvae received prednisolone PN only OP group and PN with spermine SPM group aiming at revealing the key molecular mediating the anti osteoporosis effect of spermine.     OP2 OP2 OP2   strain:Tubingen line|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:7 day|dev stage:larvae|collection date:2022 11 21|geo loc name:China:Shanghai|sex:not determined|tissue:whole body|birth date:2022 11 14|birth location:China:Shanghai|health state:OP|sample type:Control|treatment:prednisol1|replicate:biological replicate2|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish: larvae OP2 OP2 Total RNA was extracted and RNA integrity was assessed by agarose gel electrophoresis purity was checked using a Nanodrop OD260/280 ratio between 1.8 2.2 and quantified with Qubit. The samples were sequenced using the Illumina NovaSeq 6000 platform. The Skewer software trimmed splice sequences and low quality fragments.     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP484115     OP2_221124N_S26_L004_R1_001.fastq.gz OP2_221124N_S26_L004_R2_001.fastq.gz fastq fastq 8254140482.0 27331591.0 OP2 221124N S26 L004 R1 001.fastq.gz 0:151 1:151 A:2224573197;C:1861991388;G:2017457521;T:2149938231;N:180145 151 151     2224573197 1861991388 2017457521 2149938231 180145 SRX23255328 SRS20157330     Shanghai Ninth People's Hospital, Shanghai Jiao Tong University School of Medicine                       B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2024-01-17 Larval Larval Trunk Surface Structure
29845 29845 SRR27586315 SRX23255327 SRS20157329 SRP484115 PRJNA1065252 Study of spermine on prednisolone treated zebrafish larvae PRJNA1065252 Other RNA sequencing was conducted in zebrafish larvae received prednisolone PN only OP group and PN with spermine SPM group aiming at revealing the key molecular mediating the anti osteoporosis effect of spermine.     OP1 OP1 OP1   strain:Tubingen line|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:7 day|dev stage:larvae|collection date:2022 11 21|geo loc name:China:Shanghai|sex:not determined|tissue:whole body|birth date:2022 11 14|birth location:China:Shanghai|health state:OP|sample type:Control|treatment:prednisol1|replicate:biological replicate1|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish: larvae OP1 OP1 Total RNA was extracted and RNA integrity was assessed by agarose gel electrophoresis purity was checked using a Nanodrop OD260/280 ratio between 1.8 2.2 and quantified with Qubit. The samples were sequenced using the Illumina NovaSeq 6000 platform. The Skewer software trimmed splice sequences and low quality fragments.     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP484115     OP1_221124N_S25_L004_R1_001.fastq.gz OP1_221124N_S25_L004_R2_001.fastq.gz fastq fastq 8986218380.0 29755690.0 OP1 221124N S25 L004 R1 001.fastq.gz 0:151 1:151 A:2416582939;C:2017538630;G:2211618173;T:2340284174;N:194464 151 151     2416582939 2017538630 2211618173 2340284174 194464 SRX23255327 SRS20157329     Shanghai Ninth People's Hospital, Shanghai Jiao Tong University School of Medicine                       B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2024-01-17 Larval Larval Trunk Surface Structure
32529 32529 SRR29303005 SRX24820082 SRS21534192 SRP512093 PRJNA1120586 Light induce Zebrafish larvae PRJNA1120586 Other           L6H 1   breed:zebrafish|cultivar:not applicable|ecotype:AB|age:5 dpf|dev stage:larvae|collection date:2020 10 10|geo loc name:China: Lanzhou|sex:not determined|tissue:whole body|BioSampleModel:Model organism or animal                 rna seq of zebrafish larvae L6H 1 L6H 1 RNA seq     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED ILLUMINA Illumina HiSeq 3000   SRP512093     L6H_1_Clean_Data_unaligned.fq.1.gz L6H_1_Clean_Data_unaligned.fq.2.gz fastq fastq 11101739564.0 40053288.0 L6H 1 Clean Data unaligned.fq.1.gz 0:138.59 1:138.59 A:1881599898;C:3750364237;G:3437926223;T:2031844069;N:5137 138 138     1881599898 3750364237 3437926223 2031844069 5137 SRX24820082 SRS21534192 SRA1890517 Lanzhou University|College of Life Science Lanzhou University 2 0.97634 0.97569 0.11214 0.10424 0.76126 0.76282 0.50878 0.71334 114 114 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-06-06 Larval Larval Trunk Surface Structure
32530 32530 SRR29303006 SRX24820081 SRS21534191 SRP512093 PRJNA1120586 Light induce Zebrafish larvae PRJNA1120586 Other           L3H 3   breed:zebrafish|cultivar:not applicable|ecotype:AB|age:5 dpf|dev stage:larvae|collection date:2020 10 09|geo loc name:China: Lanzhou|sex:not determined|tissue:whole body|BioSampleModel:Model organism or animal                 rna seq of zebrafish larvae L3H 3 L3H 3 RNA seq     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED ILLUMINA Illumina HiSeq 3000   SRP512093     L3H_3_Clean_Data_unaligned.fq.1.gz L3H_3_Clean_Data_unaligned.fq.2.gz fastq fastq 12429288407.0 44697516.0 L3H 3 Clean Data unaligned.fq.1.gz 0:139.04 1:139.04 A:1944396671;C:4412224488;G:3945149648;T:2127511369;N:6231 139 139     1944396671 4412224488 3945149648 2127511369 6231 SRX24820081 SRS21534191 SRA1890517 Lanzhou University|College of Life Science Lanzhou University 2 0.97914 0.97901 0.10979 0.09858 0.78066 0.78042 0.74708 0.68135 141 141 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-06-06 Larval Larval Trunk Surface Structure
32531 32531 SRR29303007 SRX24820080 SRS21534190 SRP512093 PRJNA1120586 Light induce Zebrafish larvae PRJNA1120586 Other           L3H 2   breed:zebrafish|cultivar:not applicable|ecotype:AB|age:5 dpf|dev stage:larvae|collection date:2020 10 08|geo loc name:China: Lanzhou|sex:not determined|tissue:whole body|BioSampleModel:Model organism or animal                 rna seq of zebrafish larvae L3H 2 L3H 2 RNA seq     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED ILLUMINA Illumina HiSeq 3000   SRP512093     L3H_2_Clean_Data_unaligned.fq.1.gz L3H_2_Clean_Data_unaligned.fq.2.gz fastq fastq 11592698722.0 41780538.0 L3H 2 Clean Data unaligned.fq.1.gz 0:138.74 1:138.73 A:1962645286;C:3927770539;G:3580608912;T:2121668415;N:5570 138 138     1962645286 3927770539 3580608912 2121668415 5570 SRX24820080 SRS21534190 SRA1890517 Lanzhou University|College of Life Science Lanzhou University 2 0.97149 0.9706 0.10139 0.09326 0.76414 0.76473 0.71808 0.69507 141 141 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-06-06 Larval Larval Trunk Surface Structure
32532 32532 SRR29303008 SRX24820079 SRS21534189 SRP512093 PRJNA1120586 Light induce Zebrafish larvae PRJNA1120586 Other           L3H 1   breed:zebrafish|cultivar:not applicable|ecotype:AB|age:5 dpf|dev stage:larvae|collection date:2020 10 07|geo loc name:China: Lanzhou|sex:not determined|tissue:whole body|BioSampleModel:Model organism or animal                 rna seq of zebrafish larvae L3H 1 L3H 1 RNA seq     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED ILLUMINA Illumina HiSeq 3000   SRP512093     L3H_1_Clean_Data_unaligned.fq.1.gz L3H_1_Clean_Data_unaligned.fq.2.gz fastq fastq 12497258818.0 45041676.0 L3H 1 Clean Data unaligned.fq.1.gz 0:138.73 1:138.73 A:2056782475;C:4298181686;G:3906493539;T:2235795303;N:5815 138 138     2056782475 4298181686 3906493539 2235795303 5815 SRX24820079 SRS21534189 SRA1890517 Lanzhou University|College of Life Science Lanzhou University 2 0.9711 0.9699 0.1059 0.09694 0.77571 0.7764 0.71997 0.74345 141 141 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-06-06 Larval Larval Trunk Surface Structure
32533 32533 SRR29303009 SRX24820078 SRS21534188 SRP512093 PRJNA1120586 Light induce Zebrafish larvae PRJNA1120586 Other           L1H 3   breed:zebrafish|cultivar:not applicable|ecotype:AB|age:5 dpf|dev stage:larvae|collection date:2020 10 06|geo loc name:China: Lanzhou|sex:not determined|tissue:whole body|BioSampleModel:Model organism or animal                 rna seq of zebrafish larvae L1H 3 L1H 3 RNA seq     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED ILLUMINA Illumina HiSeq 3000   SRP512093     L1H_3_Clean_Data_unaligned.fq.1.gz L1H_3_Clean_Data_unaligned.fq.2.gz fastq fastq 12273249812.0 44192396.0 L1H 3 Clean Data unaligned.fq.1.gz 0:138.86 1:138.86 A:2140693174;C:4064298470;G:3750682721;T:2317568977;N:6470 138 138     2140693174 4064298470 3750682721 2317568977 6470 SRX24820078 SRS21534188 SRA1890517 Lanzhou University|College of Life Science Lanzhou University 2 0.96617 0.96354 0.10751 0.09938 0.76258 0.76347 0.71559 0.72025 141 141 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-06-06 Larval Larval Trunk Surface Structure
32534 32534 SRR29303010 SRX24820077 SRS21534187 SRP512093 PRJNA1120586 Light induce Zebrafish larvae PRJNA1120586 Other           L1H 2   breed:zebrafish|cultivar:not applicable|ecotype:AB|age:5 dpf|dev stage:larvae|collection date:2020 10 05|geo loc name:China: Lanzhou|sex:not determined|tissue:whole body|BioSampleModel:Model organism or animal                 rna seq of zebrafish larvae L1H 2 L1H 2 RNA seq     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED ILLUMINA Illumina HiSeq 3000   SRP512093     L1H_2_Clean_Data_unaligned.fq.1.gz L1H_2_Clean_Data_unaligned.fq.2.gz fastq fastq 12413369278.0 44651075.0 L1H 2 Clean Data unaligned.fq.1.gz 0:139.01 1:139.00 A:2070178651;C:4220902189;G:3863965227;T:2258317385;N:5826 139 139     2070178651 4220902189 3863965227 2258317385 5826 SRX24820077 SRS21534187 SRA1890517 Lanzhou University|College of Life Science Lanzhou University 2 0.97099 0.96979 0.08555 0.07779 0.77346 0.77396 0.73438 0.55772 127 127 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-06-06 Larval Larval Trunk Surface Structure
32535 32535 SRR29303011 SRX24820076 SRS21534185 SRP512093 PRJNA1120586 Light induce Zebrafish larvae PRJNA1120586 Other           L1H 1   breed:zebrafish|cultivar:not applicable|ecotype:AB|age:5 dpf|dev stage:larvae|collection date:2020 10 04|geo loc name:China: Lanzhou|sex:not determined|tissue:whole body|BioSampleModel:Model organism or animal                 rna seq of zebrafish larvae L1H 1 L1H 1 RNA seq     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED ILLUMINA Illumina HiSeq 3000   SRP512093     L1H_1_Clean_Data_unaligned.fq.1.gz L1H_1_Clean_Data_unaligned.fq.2.gz fastq fastq 12302170771.0 44531982.0 L1H 1 Clean Data unaligned.fq.1.gz 0:138.13 1:138.13 A:2209775658;C:3996913716;G:3742634659;T:2352841220;N:5518 138 138     2209775658 3996913716 3742634659 2352841220 5518 SRX24820076 SRS21534185 SRA1890517 Lanzhou University|College of Life Science Lanzhou University 2 0.97281 0.97214 0.1053 0.09944 0.75446 0.75418 0.68857 0.68601 141 141 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-06-06 Larval Larval Trunk Surface Structure
32536 32536 SRR29303012 SRX24820075 SRS21534186 SRP512093 PRJNA1120586 Light induce Zebrafish larvae PRJNA1120586 Other           DD 3   breed:zebrafish|cultivar:not applicable|ecotype:AB|age:5 dpf|dev stage:larvae|collection date:2020 10 03|geo loc name:China: Lanzhou|sex:not determined|tissue:whole body|BioSampleModel:Model organism or animal                 rna seq of zebrafish larvae DD 3 DD 3 RNA seq     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED ILLUMINA Illumina HiSeq 3000   SRP512093     DD_3_Clean_Data_unaligned.fq.1.gz DD_3_Clean_Data_unaligned.fq.2.gz fastq fastq 11687586349.0 42197319.0 DD 3 Clean Data unaligned.fq.1.gz 0:138.49 1:138.49 A:2056950205;C:3858960815;G:3563760225;T:2207909207;N:5897 138 138     2056950205 3858960815 3563760225 2207909207 5897 SRX24820075 SRS21534186 SRA1890517 Lanzhou University|College of Life Science Lanzhou University 2 0.96463 0.96389 0.11454 0.1079 0.76163 0.7626 0.54192 0.73007 141 141 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-06-06 Larval Larval Trunk Surface Structure
32537 32537 SRR29303013 SRX24820074 SRS21534184 SRP512093 PRJNA1120586 Light induce Zebrafish larvae PRJNA1120586 Other           L6H 3   breed:zebrafish|cultivar:not applicable|ecotype:AB|age:5 dpf|dev stage:larvae|collection date:2020 10 12|geo loc name:China: Lanzhou|sex:not determined|tissue:whole body|BioSampleModel:Model organism or animal                 rna seq of zebrafish larvae L6H 3 L6H 3 RNA seq     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED ILLUMINA Illumina HiSeq 3000   SRP512093     L6H_3_Clean_Data_unaligned.fq.1.gz L6H_3_Clean_Data_unaligned.fq.2.gz fastq fastq 11507362721.0 41543859.0 L6H 3 Clean Data unaligned.fq.1.gz 0:138.50 1:138.49 A:2101644820;C:3715974381;G:3443971890;T:2245765677;N:5953 138 138     2101644820 3715974381 3443971890 2245765677 5953 SRX24820074 SRS21534184 SRA1890517 Lanzhou University|College of Life Science Lanzhou University 2 0.96389 0.96345 0.12875 0.12146 0.75213 0.7526 0.69992 0.69951 141 141 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-06-06 Larval Larval Trunk Surface Structure
32538 32538 SRR29303014 SRX24820073 SRS21534183 SRP512093 PRJNA1120586 Light induce Zebrafish larvae PRJNA1120586 Other           L6H 2   breed:zebrafish|cultivar:not applicable|ecotype:AB|age:5 dpf|dev stage:larvae|collection date:2020 10 11|geo loc name:China: Lanzhou|sex:not determined|tissue:whole body|BioSampleModel:Model organism or animal                 rna seq of zebrafish larvae L6H 2 L6H 2 RNA seq     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED ILLUMINA Illumina HiSeq 3000   SRP512093     L6H_2_Clean_Data_unaligned.fq.1.gz L6H_2_Clean_Data_unaligned.fq.2.gz fastq fastq 11424359048.0 41225621.0 L6H 2 Clean Data unaligned.fq.1.gz 0:138.56 1:138.56 A:1944006759;C:3838938644;G:3536756873;T:2104650999;N:5773 138 138     1944006759 3838938644 3536756873 2104650999 5773 SRX24820073 SRS21534183 SRA1890517 Lanzhou University|College of Life Science Lanzhou University 2 0.97629 0.97534 0.10969 0.10186 0.76234 0.76315 0.70599 0.70482 141 141 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-06-06 Larval Larval Trunk Surface Structure
32539 32539 SRR29303015 SRX24820072 SRS21534182 SRP512093 PRJNA1120586 Light induce Zebrafish larvae PRJNA1120586 Other           DD 2   breed:zebrafish|cultivar:not applicable|ecotype:AB|age:5 dpf|dev stage:larvae|collection date:2020 10 02|geo loc name:China: Lanzhou|sex:not determined|tissue:whole body|BioSampleModel:Model organism or animal                 rna seq of zebrafish larvae DD 2 DD 2 RNA seq     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED ILLUMINA Illumina HiSeq 3000   SRP512093     DD_2_Clean_Data_unaligned.fq.1.gz DD_2_Clean_Data_unaligned.fq.2.gz fastq fastq 11514098186.0 41662480.0 DD 2 Clean Data unaligned.fq.1.gz 0:138.18 1:138.18 A:2000101979;C:3836446667;G:3546229881;T:2131314047;N:5612 138 138     2000101979 3836446667 3546229881 2131314047 5612 SRX24820072 SRS21534182 SRA1890517 Lanzhou University|College of Life Science Lanzhou University 2 0.97366 0.973 0.10082 0.09428 0.7641 0.76418 0.6992 0.6976 141 141 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-06-06 Larval Larval Trunk Surface Structure
32540 32540 SRR29303016 SRX24820071 SRS21534181 SRP512093 PRJNA1120586 Light induce Zebrafish larvae PRJNA1120586 Other           DD 1   breed:zebrafish|cultivar:not applicable|ecotype:AB|age:5 dpf|dev stage:larvae|collection date:2020 10 01|geo loc name:China: Lanzhou|sex:not determined|tissue:whole body|BioSampleModel:Model organism or animal                 rna seq of zebrafish larvae DD 1 DD 1 RNA seq     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED ILLUMINA Illumina HiSeq 3000   SRP512093     DD_1_Clean_Data_unaligned.fq.1.gz DD_1_Clean_Data_unaligned.fq.2.gz fastq fastq 12387599627.0 44593250.0 DD 1 Clean Data unaligned.fq.1.gz 0:138.90 1:138.89 A:2122330901;C:4173621794;G:3807435168;T:2284205715;N:6049 138 138     2122330901 4173621794 3807435168 2284205715 6049 SRX24820071 SRS21534181 SRA1890517 Lanzhou University|College of Life Science Lanzhou University 2 0.97122 0.9708 0.10985 0.10105 0.76384 0.76406 0.59526 0.7234 141 141 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-06-06 Larval Larval Trunk Surface Structure
32541 32541 SRR29303120 SRX24820197 SRS21534299 SRP512097 PRJNA1120592 Light induce Zebrafish larvae PRJNA1120592 Other Light induce Zebrafish larvae miRNA         L6H 1 miRNA   breed:zebrafish|cultivar:not applicable|ecotype:AB|age:5 dpf|dev stage:larvae|collection date:2020 10 10|geo loc name:China: Lanzhou|sex:not determined|tissue:whole body|BioSampleModel:Model organism or animal                 miRNA seq of zebrafish larvae L6H 1 L6H 1 miRNA seq     miRNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE ILLUMINA Illumina HiSeq 3000   SRP512097     L6H_1.fq.gz fastq 619966455.0 12156205.0 L6H 1.fq.gz 0:51 A:143411079;C:162001488;G:168382605;T:146007422;N:163861 51       143411079 162001488 168382605 146007422 163861 SRX24820197 SRS21534299 SRA1890590 Lanzhou University|College of Life Science Lanzhou University 1 0.01303   0.00337   0.99472   0.5628   51   B   usable mapping rate illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-06-06 Larval Larval Trunk Surface Structure
32542 32542 SRR29303121 SRX24820196 SRS21534298 SRP512097 PRJNA1120592 Light induce Zebrafish larvae PRJNA1120592 Other Light induce Zebrafish larvae miRNA         L3H 3 miRNA   breed:zebrafish|cultivar:not applicable|ecotype:AB|age:5 dpf|dev stage:larvae|collection date:2020 10 09|geo loc name:China: Lanzhou|sex:not determined|tissue:whole body|BioSampleModel:Model organism or animal                 miRNA seq of zebrafish larvae L3H 3 L3H 3 miRNA seq     miRNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE ILLUMINA Illumina HiSeq 3000   SRP512097     L3H_3.fq.gz fastq 738125703.0 14473053.0 L3H 3.fq.gz 0:51 A:176614297;C:190760467;G:197157923;T:173400138;N:192878 51       176614297 190760467 197157923 173400138 192878 SRX24820196 SRS21534298 SRA1890590 Lanzhou University|College of Life Science Lanzhou University 1 0.01163   0.00356   0.99379   0.55469   51   T   under 1.2% mapping rate illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-06-06 Larval Larval Trunk Surface Structure
32543 32543 SRR29303122 SRX24820195 SRS21534297 SRP512097 PRJNA1120592 Light induce Zebrafish larvae PRJNA1120592 Other Light induce Zebrafish larvae miRNA         L3H 2 miRNA   breed:zebrafish|cultivar:not applicable|ecotype:AB|age:5 dpf|dev stage:larvae|collection date:2020 10 08|geo loc name:China: Lanzhou|sex:not determined|tissue:whole body|BioSampleModel:Model organism or animal                 miRNA seq of zebrafish larvae L3H 2 L3H 2 miRNA seq     miRNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE ILLUMINA Illumina HiSeq 3000   SRP512097     L3H_2.fq.gz fastq 489154821.0 9591271.0 L3H 2.fq.gz 0:51 A:109695797;C:132121151;G:127787221;T:119539033;N:11619 51       109695797 132121151 127787221 119539033 11619 SRX24820195 SRS21534297 SRA1890590 Lanzhou University|College of Life Science Lanzhou University 1 0.05359   0.01132   0.98924   0.55364   51   B   usable mapping rate illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-06-06 Larval Larval Trunk Surface Structure
32544 32544 SRR29303123 SRX24820194 SRS21534296 SRP512097 PRJNA1120592 Light induce Zebrafish larvae PRJNA1120592 Other Light induce Zebrafish larvae miRNA         L3H 1 miRNA   breed:zebrafish|cultivar:not applicable|ecotype:AB|age:5 dpf|dev stage:larvae|collection date:2020 10 07|geo loc name:China: Lanzhou|sex:not determined|tissue:whole body|BioSampleModel:Model organism or animal                 miRNA seq of zebrafish larvae L3H 1 L3H 1 miRNA seq     miRNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE ILLUMINA Illumina HiSeq 3000   SRP512097     L3H_1.fq.gz fastq 551502015.0 10813765.0 L3H 1.fq.gz 0:51 A:130437158;C:141969110;G:146479841;T:132605147;N:10759 51       130437158 141969110 146479841 132605147 10759 SRX24820194 SRS21534296 SRA1890590 Lanzhou University|College of Life Science Lanzhou University 1 0.13403   0.01834   0.98735   0.54849   51   B   usable mapping rate illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-06-06 Larval Larval Trunk Surface Structure
32545 32545 SRR29303124 SRX24820193 SRS21534295 SRP512097 PRJNA1120592 Light induce Zebrafish larvae PRJNA1120592 Other Light induce Zebrafish larvae miRNA         L1H 3 miRNA   breed:zebrafish|cultivar:not applicable|ecotype:AB|age:5 dpf|dev stage:larvae|collection date:2020 10 06|geo loc name:China: Lanzhou|sex:not determined|tissue:whole body|BioSampleModel:Model organism or animal                 miRNA seq of zebrafish larvae L1H 3 L1H 3 miRNA seq     miRNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE ILLUMINA Illumina HiSeq 3000   SRP512097     L1H_3.fq.gz fastq 524533827.0 10284977.0 L1H 3.fq.gz 0:51 A:118598837;C:136729611;G:142993590;T:126201873;N:9916 51       118598837 136729611 142993590 126201873 9916 SRX24820193 SRS21534295 SRA1890590 Lanzhou University|College of Life Science Lanzhou University 1 0.00829   0.00187   0.99472   0.54701   51   T   under 1.2% mapping rate illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-06-06 Larval Larval Trunk Surface Structure
32546 32546 SRR29303125 SRX24820192 SRS21534294 SRP512097 PRJNA1120592 Light induce Zebrafish larvae PRJNA1120592 Other Light induce Zebrafish larvae miRNA         L1H 2 miRNA   breed:zebrafish|cultivar:not applicable|ecotype:AB|age:5 dpf|dev stage:larvae|collection date:2020 10 05|geo loc name:China: Lanzhou|sex:not determined|tissue:whole body|BioSampleModel:Model organism or animal                 miRNA seq of zebrafish larvae L1H 2 L1H 2 miRNA seq     miRNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE ILLUMINA Illumina HiSeq 3000   SRP512097     L1H_2.fq.gz fastq 541697163.0 10621513.0 L1H 2.fq.gz 0:51 A:126751483;C:135818134;G:141122995;T:137953543;N:51008 51       126751483 135818134 141122995 137953543 51008 SRX24820192 SRS21534294 SRA1890590 Lanzhou University|College of Life Science Lanzhou University 1 0.33438   0.08101   0.98238   0.53337   51   B   usable mapping rate illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-06-06 Larval Larval Trunk Surface Structure
32547 32547 SRR29303126 SRX24820191 SRS21534293 SRP512097 PRJNA1120592 Light induce Zebrafish larvae PRJNA1120592 Other Light induce Zebrafish larvae miRNA         L1H 1 miRNA   breed:zebrafish|cultivar:not applicable|ecotype:AB|age:5 dpf|dev stage:larvae|collection date:2020 10 04|geo loc name:China: Lanzhou|sex:not determined|tissue:whole body|BioSampleModel:Model organism or animal                 miRNA seq of zebrafish larvae L1H 1 L1H 1 miRNA seq     miRNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE ILLUMINA Illumina HiSeq 3000   SRP512097     L1H_1.fq.gz fastq 930096282.0 18237182.0 L1H 1.fq.gz 0:51 A:212568445;C:243497911;G:260145458;T:213851032;N:33436 51       212568445 243497911 260145458 213851032 33436 SRX24820191 SRS21534293 SRA1890590 Lanzhou University|College of Life Science Lanzhou University 1 0.64143   0.02683   0.98683   0.5342   51   B   usable mapping rate illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-06-06 Larval Larval Trunk Surface Structure
32548 32548 SRR29303127 SRX24820190 SRS21534292 SRP512097 PRJNA1120592 Light induce Zebrafish larvae PRJNA1120592 Other Light induce Zebrafish larvae miRNA         DD 3 miRNA   breed:zebrafish|cultivar:not applicable|ecotype:AB|age:5 dpf|dev stage:larvae|collection date:2020 10 03|geo loc name:China: Lanzhou|sex:not determined|tissue:whole body|BioSampleModel:Model organism or animal                 miRNA seq of zebrafish larvae DD 3 DD 3 miRNA seq     miRNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE ILLUMINA Illumina HiSeq 3000   SRP512097     DD_3.fq.gz fastq 667459389.0 13087439.0 DD 3.fq.gz 0:51 A:157267065;C:168909886;G:178336724;T:162865168;N:80546 51       157267065 168909886 178336724 162865168 80546 SRX24820190 SRS21534292 SRA1890590 Lanzhou University|College of Life Science Lanzhou University 1 0.19375   0.03528   0.98827   0.55124   51   B   usable mapping rate illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-06-06 Larval Larval Trunk Surface Structure
32549 32549 SRR29303128 SRX24820189 SRS21534291 SRP512097 PRJNA1120592 Light induce Zebrafish larvae PRJNA1120592 Other Light induce Zebrafish larvae miRNA         L6H 3 miRNA   breed:zebrafish|cultivar:not applicable|ecotype:AB|age:5 dpf|dev stage:larvae|collection date:2020 10 12|geo loc name:China: Lanzhou|sex:not determined|tissue:whole body|BioSampleModel:Model organism or animal                 miRNA seq of zebrafish larvae L6H 3 L6H 3 miRNA seq     miRNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE ILLUMINA Illumina HiSeq 3000   SRP512097     L6H_3.fq.gz fastq 551181072.0 10807472.0 L6H 3.fq.gz 0:51 A:126813056;C:141881980;G:147676363;T:134665008;N:144665 51       126813056 141881980 147676363 134665008 144665 SRX24820189 SRS21534291 SRA1890590 Lanzhou University|College of Life Science Lanzhou University 1 0.09301   0.01507   0.99042   0.54323   51   B   usable mapping rate illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-06-06 Larval Larval Trunk Surface Structure
32550 32550 SRR29303129 SRX24820188 SRS21534290 SRP512097 PRJNA1120592 Light induce Zebrafish larvae PRJNA1120592 Other Light induce Zebrafish larvae miRNA         L6H 2 miRNA   breed:zebrafish|cultivar:not applicable|ecotype:AB|age:5 dpf|dev stage:larvae|collection date:2020 10 11|geo loc name:China: Lanzhou|sex:not determined|tissue:whole body|BioSampleModel:Model organism or animal                 miRNA seq of zebrafish larvae L6H 2 L6H 2 miRNA seq     miRNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE ILLUMINA Illumina HiSeq 3000   SRP512097     L6H_2.fq.gz fastq 571762632.0 11211032.0 L6H 2.fq.gz 0:51 A:138521192;C:148068464;G:150615597;T:134408189;N:149190 51       138521192 148068464 150615597 134408189 149190 SRX24820188 SRS21534290 SRA1890590 Lanzhou University|College of Life Science Lanzhou University 1 0.01523   0.00336   0.9933   0.57685   51   B   usable mapping rate illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-06-06 Larval Larval Trunk Surface Structure
32551 32551 SRR29303130 SRX24820187 SRS21534289 SRP512097 PRJNA1120592 Light induce Zebrafish larvae PRJNA1120592 Other Light induce Zebrafish larvae miRNA         DD 2 miRNA   breed:zebrafish|cultivar:not applicable|ecotype:AB|age:5 dpf|dev stage:larvae|collection date:2020 10 02|geo loc name:China: Lanzhou|sex:not determined|tissue:whole body|BioSampleModel:Model organism or animal                 miRNA seq of zebrafish larvae DD 2 DD 2 miRNA seq     miRNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE ILLUMINA Illumina HiSeq 3000   SRP512097     DD_2.fq.gz fastq 706940937.0 13861587.0 DD 2.fq.gz 0:51 A:162899595;C:189209828;G:187422113;T:167222837;N:186564 51       162899595 189209828 187422113 167222837 186564 SRX24820187 SRS21534289 SRA1890590 Lanzhou University|College of Life Science Lanzhou University 1 0.02266   0.00566   0.99334   0.56959   51   B   usable mapping rate illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-06-06 Larval Larval Trunk Surface Structure
32552 32552 SRR29303131 SRX24820186 SRS21534288 SRP512097 PRJNA1120592 Light induce Zebrafish larvae PRJNA1120592 Other Light induce Zebrafish larvae miRNA         DD 1 miRNA   breed:zebrafish|cultivar:not applicable|ecotype:AB|age:5 dpf|dev stage:larvae|collection date:2020 10 01|geo loc name:China: Lanzhou|sex:not determined|tissue:whole body|BioSampleModel:Model organism or animal                 miRNA seq of zebrafish larvae DD 1 DD 1 miRNA seq     miRNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE ILLUMINA Illumina HiSeq 3000   SRP512097     DD_1.fq.gz fastq 540332862.0 10594762.0 DD 1.fq.gz 0:51 A:127336994;C:143901414;G:142437491;T:126515166;N:141797 51       127336994 143901414 142437491 126515166 141797 SRX24820186 SRS21534288 SRA1890590 Lanzhou University|College of Life Science Lanzhou University 1 0.01404   0.00313   0.99484   0.56573   51   B   usable mapping rate illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-06-06 Larval Larval Trunk Surface Structure
71636 71636 SRR21869755 SRX17856945 SRS15377990 SRP402080 PRJNA889683 miRNA mRNA sequencing of zebrafish embryos PRJNA889683 Other miRNA Seq and RNA Seq data of zebrafish embryos post exposure to TBBPA and TBBPA BHEE         BHEE L 1   replicate:biological replicate 1|strain:AB|isolate:not applicable|breed:wild type|cultivar:not applicable|ecotype:not applicable|age:120 hpf|dev stage:larvae|sex:not applicable|tissue:whole body 10|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish larvae AT20221019 AT20221019 RNA Seq of zebrafish larvae     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED BGISEQ BGISEQ-500   SRP402080     BHEE_L_1_1.fq.gz BHEE_L_1_2.fq.gz fastq fastq 6801171000.0 45341140.0 BHEE L 1 1.fq.gz 0:150 1:150 A:1888974247;C:1508524578;G:1489908963;T:1913517780;N:245432 150 150     1888974247 1508524578 1489908963 1913517780 245432 SRX17856945 SRS15377990 SRA1518395 Jiangsu University|School of Environment and Safety Engineering Jiangsu University 1 0.9335   0.13981   0.68002   0.4788   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2022-10-12 Larval Larval Trunk Surface Structure
71637 71637 SRR21869756 SRX17856944 SRS15377989 SRP402080 PRJNA889683 miRNA mRNA sequencing of zebrafish embryos PRJNA889683 Other miRNA Seq and RNA Seq data of zebrafish embryos post exposure to TBBPA and TBBPA BHEE         TBBPA H 3   replicate:biological replicate 3|strain:AB|isolate:not applicable|breed:wild type|cultivar:not applicable|ecotype:not applicable|age:120 hpf|dev stage:larvae|sex:not applicable|tissue:whole body 9|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish larvae AT20221018 AT20221018 RNA Seq of zebrafish larvae     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED BGISEQ BGISEQ-500   SRP402080     TBBPA_H_3_1.fq.gz TBBPA_H_3_2.fq.gz fastq fastq 6951086400.0 46340576.0 TBBPA H 3 1.fq.gz 0:150 1:150 A:1880119007;C:1592162094;G:1577584281;T:1900616606;N:604412 150 150     1880119007 1592162094 1577584281 1900616606 604412 SRX17856944 SRS15377989 SRA1518395 Jiangsu University|School of Environment and Safety Engineering Jiangsu University 1 0.93943   0.10589   0.67689   0.47979   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2022-10-12 Larval Larval Trunk Surface Structure
71638 71638 SRR21869757 SRX17856943 SRS15377988 SRP402080 PRJNA889683 miRNA mRNA sequencing of zebrafish embryos PRJNA889683 Other miRNA Seq and RNA Seq data of zebrafish embryos post exposure to TBBPA and TBBPA BHEE         TBBPA H 2   replicate:biological replicate 2|strain:AB|isolate:not applicable|breed:wild type|cultivar:not applicable|ecotype:not applicable|age:120 hpf|dev stage:larvae|sex:not applicable|tissue:whole body 8|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish larvae AT20221017 AT20221017 RNA Seq of zebrafish larvae     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED BGISEQ BGISEQ-500   SRP402080     TBBPA_H_2_2.fq.gz TBBPA_H_2_1.fq.gz fastq fastq 6795391800.0 45302612.0 TBBPA H 2 1.fq.gz 0:150 1:150 A:1857631184;C:1537732087;G:1520731548;T:1879126916;N:170065 150 150     1857631184 1537732087 1520731548 1879126916 170065 SRX17856943 SRS15377988 SRA1518395 Jiangsu University|School of Environment and Safety Engineering Jiangsu University 1 0.939   0.11307   0.67562   0.48002   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2022-10-12 Larval Larval Trunk Surface Structure
71639 71639 SRR21869758 SRX17856942 SRS15377987 SRP402080 PRJNA889683 miRNA mRNA sequencing of zebrafish embryos PRJNA889683 Other miRNA Seq and RNA Seq data of zebrafish embryos post exposure to TBBPA and TBBPA BHEE         TBBPA H 1   replicate:biological replicate 1|strain:AB|isolate:not applicable|breed:wild type|cultivar:not applicable|ecotype:not applicable|age:120 hpf|dev stage:larvae|sex:not applicable|tissue:whole body 7|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish larvae AT20221016 AT20221016 RNA Seq of zebrafish larvae     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED BGISEQ BGISEQ-500   SRP402080     TBBPA_H_1_1.fq.gz TBBPA_H_1_2.fq.gz fastq fastq 6725010600.0 44833404.0 TBBPA H 1 1.fq.gz 0:150 1:150 A:1843421900;C:1516907852;G:1500976839;T:1863525958;N:178051 150 150     1843421900 1516907852 1500976839 1863525958 178051 SRX17856942 SRS15377987 SRA1518395 Jiangsu University|School of Environment and Safety Engineering Jiangsu University 1 0.93897   0.11644   0.67919   0.47402   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2022-10-12 Larval Larval Trunk Surface Structure
71640 71640 SRR21869759 SRX17856941 SRS15377986 SRP402080 PRJNA889683 miRNA mRNA sequencing of zebrafish embryos PRJNA889683 Other miRNA Seq and RNA Seq data of zebrafish embryos post exposure to TBBPA and TBBPA BHEE         TBBPA L 3   replicate:biological replicate 3|strain:AB|isolate:not applicable|breed:wild type|cultivar:not applicable|ecotype:not applicable|age:120 hpf|dev stage:larvae|sex:not applicable|tissue:whole body 6|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish larvae AT20221015 AT20221015 RNA Seq of zebrafish larvae     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED BGISEQ BGISEQ-500   SRP402080     TBBPA_L_3_1.fq.gz TBBPA_L_3_2.fq.gz fastq fastq 6808286400.0 45388576.0 TBBPA L 3 1.fq.gz 0:150 1:150 A:1858988152;C:1543294665;G:1528035258;T:1877760196;N:208129 150 150     1858988152 1543294665 1528035258 1877760196 208129 SRX17856941 SRS15377986 SRA1518395 Jiangsu University|School of Environment and Safety Engineering Jiangsu University 1 0.93964   0.11186   0.67537   0.47243   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2022-10-12 Larval Larval Trunk Surface Structure
71641 71641 SRR21869760 SRX17856940 SRS15377985 SRP402080 PRJNA889683 miRNA mRNA sequencing of zebrafish embryos PRJNA889683 Other miRNA Seq and RNA Seq data of zebrafish embryos post exposure to TBBPA and TBBPA BHEE         TBBPA L 2   replicate:biological replicate 2|strain:AB|isolate:not applicable|breed:wild type|cultivar:not applicable|ecotype:not applicable|age:120 hpf|dev stage:larvae|sex:not applicable|tissue:whole body 5|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish larvae AT20221014 AT20221014 RNA Seq of zebrafish larvae     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED BGISEQ BGISEQ-500   SRP402080     TBBPA_L_2_1.fq.gz TBBPA_L_2_2.fq.gz fastq fastq 6774228000.0 45161520.0 TBBPA L 2 1.fq.gz 0:150 1:150 A:1848399114;C:1536937930;G:1519456780;T:1869169891;N:264285 150 150     1848399114 1536937930 1519456780 1869169891 264285 SRX17856940 SRS15377985 SRA1518395 Jiangsu University|School of Environment and Safety Engineering Jiangsu University 1 0.94025   0.11637   0.67462   0.47263   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2022-10-12 Larval Larval Trunk Surface Structure
71642 71642 SRR21869761 SRX17856939 SRS15377984 SRP402080 PRJNA889683 miRNA mRNA sequencing of zebrafish embryos PRJNA889683 Other miRNA Seq and RNA Seq data of zebrafish embryos post exposure to TBBPA and TBBPA BHEE         TBBPA L 1   replicate:biological replicate 1|strain:AB|isolate:not applicable|breed:wild type|cultivar:not applicable|ecotype:not applicable|age:120 hpf|dev stage:larvae|sex:not applicable|tissue:whole body 4|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish larvae AT20221013 AT20221013 RNA Seq of zebrafish larvae     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED BGISEQ BGISEQ-500   SRP402080     TBBPA_L_1_2.fq.gz TBBPA_L_1_1.fq.gz fastq fastq 6921381900.0 46142546.0 TBBPA L 1 1.fq.gz 0:150 1:150 A:1884200037;C:1574208410;G:1563278291;T:1899461955;N:233207 150 150     1884200037 1574208410 1563278291 1899461955 233207 SRX17856939 SRS15377984 SRA1518395 Jiangsu University|School of Environment and Safety Engineering Jiangsu University 1 0.94086   0.10976   0.67645   0.47784   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2022-10-12 Larval Larval Trunk Surface Structure
71653 71653 SRR21869772 SRX17856928 SRS15377983 SRP402080 PRJNA889683 miRNA mRNA sequencing of zebrafish embryos PRJNA889683 Other miRNA Seq and RNA Seq data of zebrafish embryos post exposure to TBBPA and TBBPA BHEE         Control 3   replicate:biological replicate 3|strain:AB|isolate:not applicable|breed:wild type|cultivar:not applicable|ecotype:not applicable|age:120 hpf|dev stage:larvae|sex:not applicable|tissue:whole body 3|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish larvae AT20221012 AT20221012 RNA Seq of zebrafish larvae     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED BGISEQ BGISEQ-500   SRP402080     Control_3_1.fq.gz Control_3_2.fq.gz fastq fastq 6649034700.0 44326898.0 Control 3 1.fq.gz 0:150 1:150 A:1818740838;C:1502937390;G:1485401626;T:1841692100;N:262746 150 150     1818740838 1502937390 1485401626 1841692100 262746 SRX17856928 SRS15377983 SRA1518395 Jiangsu University|School of Environment and Safety Engineering Jiangsu University 1 0.938   0.1166   0.66543   0.48941   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2022-10-12 Larval Larval Trunk Surface Structure
71659 71659 SRR21869778 SRX17856922 SRS15377982 SRP402080 PRJNA889683 miRNA mRNA sequencing of zebrafish embryos PRJNA889683 Other miRNA Seq and RNA Seq data of zebrafish embryos post exposure to TBBPA and TBBPA BHEE         BHEE H 3   replicate:biological replicate 3|strain:AB|isolate:not applicable|breed:wild type|cultivar:not applicable|ecotype:not applicable|age:120 hpf|dev stage:larvae|sex:not applicable|tissue:whole body 15|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish larvae AT20221024 AT20221024 RNA Seq of zebrafish larvae     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED BGISEQ BGISEQ-500   SRP402080     BHEE_H_3_1.fq.gz BHEE_H_3_2.fq.gz fastq fastq 6884798700.0 45898658.0 BHEE H 3 1.fq.gz 0:150 1:150 A:1866404874;C:1573550459;G:1557181628;T:1887479557;N:182182 150 150     1866404874 1573550459 1557181628 1887479557 182182 SRX17856922 SRS15377982 SRA1518395 Jiangsu University|School of Environment and Safety Engineering Jiangsu University 1 0.94047   0.10782   0.67939   0.46829   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2022-10-12 Larval Larval Trunk Surface Structure
71660 71660 SRR21869779 SRX17856921 SRS15377981 SRP402080 PRJNA889683 miRNA mRNA sequencing of zebrafish embryos PRJNA889683 Other miRNA Seq and RNA Seq data of zebrafish embryos post exposure to TBBPA and TBBPA BHEE         BHEE H 2   replicate:biological replicate 2|strain:AB|isolate:not applicable|breed:wild type|cultivar:not applicable|ecotype:not applicable|age:120 hpf|dev stage:larvae|sex:not applicable|tissue:whole body 14|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish larvae AT20221023 AT20221023 RNA Seq of zebrafish larvae     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED BGISEQ BGISEQ-500   SRP402080     BHEE_H_2_1.fq.gz BHEE_H_2_2.fq.gz fastq fastq 6909787800.0 46065252.0 BHEE H 2 1.fq.gz 0:150 1:150 A:1885404557;C:1566069244;G:1552991479;T:1905049514;N:273006 150 150     1885404557 1566069244 1552991479 1905049514 273006 SRX17856921 SRS15377981 SRA1518395 Jiangsu University|School of Environment and Safety Engineering Jiangsu University 1 0.93913   0.1148   0.68057   0.48135   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2022-10-12 Larval Larval Trunk Surface Structure
71661 71661 SRR21869780 SRX17856920 SRS15377980 SRP402080 PRJNA889683 miRNA mRNA sequencing of zebrafish embryos PRJNA889683 Other miRNA Seq and RNA Seq data of zebrafish embryos post exposure to TBBPA and TBBPA BHEE         BHEE H 1   replicate:biological replicate 1|strain:AB|isolate:not applicable|breed:wild type|cultivar:not applicable|ecotype:not applicable|age:120 hpf|dev stage:larvae|sex:not applicable|tissue:whole body 13|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish larvae AT20221022 AT20221022 RNA Seq of zebrafish larvae     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED BGISEQ BGISEQ-500   SRP402080     BHEE_H_1_1.fq.gz BHEE_H_1_2.fq.gz fastq fastq 6732629100.0 44884194.0 BHEE H 1 1.fq.gz 0:150 1:150 A:1847364286;C:1516868611;G:1502080906;T:1866125318;N:189979 150 150     1847364286 1516868611 1502080906 1866125318 189979 SRX17856920 SRS15377980 SRA1518395 Jiangsu University|School of Environment and Safety Engineering Jiangsu University 1 0.93635   0.12452   0.68795   0.45878   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2022-10-12 Larval Larval Trunk Surface Structure
71662 71662 SRR21869781 SRX17856919 SRS15377979 SRP402080 PRJNA889683 miRNA mRNA sequencing of zebrafish embryos PRJNA889683 Other miRNA Seq and RNA Seq data of zebrafish embryos post exposure to TBBPA and TBBPA BHEE         BHEE L 3   replicate:biological replicate 3|strain:AB|isolate:not applicable|breed:wild type|cultivar:not applicable|ecotype:not applicable|age:120 hpf|dev stage:larvae|sex:not applicable|tissue:whole body 12|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish larvae AT20221021 AT20221021 RNA Seq of zebrafish larvae     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED BGISEQ BGISEQ-500   SRP402080     BHEE_L_3_2.fq.gz BHEE_L_3_1.fq.gz fastq fastq 7006678200.0 46711188.0 BHEE L 3 1.fq.gz 0:150 1:150 A:1916044576;C:1583765437;G:1567414975;T:1939187929;N:265283 150 150     1916044576 1583765437 1567414975 1939187929 265283 SRX17856919 SRS15377979 SRA1518395 Jiangsu University|School of Environment and Safety Engineering Jiangsu University 1 0.93694   0.12086   0.67712   0.47941   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2022-10-12 Larval Larval Trunk Surface Structure
71663 71663 SRR21869782 SRX17856918 SRS15377978 SRP402080 PRJNA889683 miRNA mRNA sequencing of zebrafish embryos PRJNA889683 Other miRNA Seq and RNA Seq data of zebrafish embryos post exposure to TBBPA and TBBPA BHEE         BHEE L 2   replicate:biological replicate 2|strain:AB|isolate:not applicable|breed:wild type|cultivar:not applicable|ecotype:not applicable|age:120 hpf|dev stage:larvae|sex:not applicable|tissue:whole body 11|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish larvae AT20221020 AT20221020 RNA Seq of zebrafish larvae     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED BGISEQ BGISEQ-500   SRP402080     BHEE_L_2_1.fq.gz BHEE_L_2_2.fq.gz fastq fastq 6735918300.0 44906122.0 BHEE L 2 1.fq.gz 0:150 1:150 A:1857641267;C:1506371574;G:1491507978;T:1880130050;N:267431 150 150     1857641267 1506371574 1491507978 1880130050 267431 SRX17856918 SRS15377978 SRA1518395 Jiangsu University|School of Environment and Safety Engineering Jiangsu University 1 0.93519   0.13194   0.67677   0.47877   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2022-10-12 Larval Larval Trunk Surface Structure
71664 71664 SRR21869783 SRX17856917 SRS15377977 SRP402080 PRJNA889683 miRNA mRNA sequencing of zebrafish embryos PRJNA889683 Other miRNA Seq and RNA Seq data of zebrafish embryos post exposure to TBBPA and TBBPA BHEE         Control 2   replicate:biological replicate 2|strain:AB|isolate:not applicable|breed:wild type|cultivar:not applicable|ecotype:not applicable|age:120 hpf|dev stage:larvae|sex:not applicable|tissue:whole body 2|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish larvae AT20221011 AT20221011 RNA Seq of zebrafish larvae     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED BGISEQ BGISEQ-500   SRP402080     Control_2_2.fq.gz Control_2_1.fq.gz fastq fastq 6852696300.0 45684642.0 Control 2 1.fq.gz 0:150 1:150 A:1884613769;C:1539134365;G:1524511981;T:1904229008;N:207177 150 150     1884613769 1539134365 1524511981 1904229008 207177 SRX17856917 SRS15377977 SRA1518395 Jiangsu University|School of Environment and Safety Engineering Jiangsu University 1 0.93613   0.12084   0.66809   0.49052   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2022-10-12 Larval Larval Trunk Surface Structure
71665 71665 SRR21869784 SRX17856916 SRS15377976 SRP402080 PRJNA889683 miRNA mRNA sequencing of zebrafish embryos PRJNA889683 Other miRNA Seq and RNA Seq data of zebrafish embryos post exposure to TBBPA and TBBPA BHEE         Control 1   replicate:biological replicate 1|strain:AB|isolate:not applicable|breed:wild type|cultivar:not applicable|ecotype:not applicable|age:120 hpf|dev stage:larvae|sex:not applicable|tissue:whole body 1|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish larvae AT20221010 AT20221010 RNA Seq of zebrafish larvae     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED BGISEQ BGISEQ-500   SRP402080     Control_1_2.fq.gz Control_1_1.fq.gz fastq fastq 6880244100.0 45868294.0 Control 1 1.fq.gz 0:150 1:150 A:1897293267;C:1539803870;G:1527831180;T:1915045017;N:270766 150 150     1897293267 1539803870 1527831180 1915045017 270766 SRX17856916 SRS15377976 SRA1518395 Jiangsu University|School of Environment and Safety Engineering Jiangsu University 1 0.93542   0.12732   0.66916   0.48712   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2022-10-12 Larval Larval Trunk Surface Structure

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;