metadata: run_metadata: 65 rows where experiment.library_selection = "RANDOM PCR", technology = "unknown" and tissue

65 rows where experiment.library_selection = "RANDOM PCR", technology = "unknown" and tissue_curation = "Whole Organism"

descending

Link	rowid ▼	run.accession	experiment.accession	sample.accession	study.accession	bioproject	study.title	study.alias	study.type	study.abstract	sample.title	sample.alias	sample.attributes	experiment.title	experiment.alias	experiment.library_name	experiment.design_description	experiment.library_strategy	experiment.library_source	experiment.library_selection	experiment.library_layout	experiment.platform	experiment.instrument_model	experiment.spot_descriptor	experiment.study_ref	run.attributes	run.filename	run.semantic_name	run.total_bases	run.total_spots	run.alias	run.read_lengths	run.base_counts	run.r1_length	run.r2_length	run.Acount	run.Ccount	run.Gcount	run.Tcount	run.Ncount	run.experiment	run.pool_member	submission.accession	submission.srasource	submission.bioprojectsource	seqdetective.n_mates	seqdetective.mapping_rate.mate1	seqdetective.mapping_rate.mate2	seqdetective.nofeature_rate.mate1	seqdetective.nofeature_rate.mate2	seqdetective.sparsity.mate1	seqdetective.sparsity.mate2	seqdetective.pos_strand_rate.mate1	seqdetective.pos_strand_rate.mate2	seqdetective.readlen.mate1	seqdetective.readlen.mate2	seqdetective.judgement.mate1	seqdetective.judgement.mate2	seqdetective.judgement.reason	platform_family	instrument_generation	read_bias	selection_class	prep_kit	sc_or_bulk	tech_class	technology	submission.bioprojectsource.country	earliest_date	devstage_curation	devstage_curation_coarse	tissue_curation	tissue_curation_coarse
39629	39629	SRR1947863	SRX981062	SRS889614	SRP056748	PRJNA279991	Zebrafish Mespaa regulates miR 430 expression during gastrulation and initiates cardiac laterality	PRJNA279991	Other	Transcriptional events during initial vertebrate heart development in vivo remain poorly understood. Mesp1 a bHLH transcription factor has been described as the earliest transcriptional regulator of cardiac progenitors in multiple species and represents an excellent candidate for the investigation of relevant targets during cardiovascular development. We report here that both depletion and mutation of Mespaa the zebrafish homolog of mammalian Mesp1 lead to randomization of cardiac looping together with significant cardiac morphogenesis defects. These disruptions are preceded by a defect in cardiac left right asymmetry. Surprisingly the defect in asymmetry was found to occur independently of defects in the transient organ of laterality the Kupffer’s vesicle KV. We show that Mespaa regulates miR 430 expression during gastrulation to control the levels of Nodal signaling and that this regulation is required for asymmetric laterality signaling in the prospective heart field. Ectopic expression of miR 430 is sufficient to induce cardiac laterality defects and consistent with Mespaa over expression in this system the reduction of miR 430 leads to cardia bifida. This study reveals a novel transcriptional regulation of miR 430 by Mespaa and a role for this pathway in cardiac laterality during gastrulation.	Danio rerio injected with mespaa morpholino 5.5hpf	Zebrafish injected with mespaa morpholino	strain:Ekkwill\|dev stage:5.5hpf\|sex:pooled male and female\|tissue:whole embryo\|BioSampleModel:Model organism or animal	Zebrafish Mespaa regulates miR 430 expression during gastrulation and initiates cardiac laterality	Zebrafish injected with mespaa morpholino replicate 2	Zebrafish injected with mespaa morpholino replicate 2	1	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina HiSeq 2000		SRP056748	loader:latf load	Mespa-230413_TGTGAA_L008_R2.fastq.gz Mespa-230413_TGTGAA_L008_R1.fastq.gz	fastq fastq	7275994449.0	42132158.0	RNAseq Danio rerio 5.5hpf mespaa morpholino replicate2	0:101 1:101	A:2058072859;C:1476303521;G:1525105443;T:2088915957;N:127596669	101	101	2058072859	1476303521	1525105443	2088915957	127596669	SRX981062	SRS889614	SRA249481	Gladstone Institute\|Bioinformatics	Gladstone Institutes	2	0.86631	0.83649	0.14484	0.22396	0.78861	0.90727	0.65055	0.64516	101	101	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	United States	2015-04-07	Gastrula	Embryo	Whole Organism	All anatomical structures
39630	39630	SRR1947880	SRX981061	SRS895863	SRP056748	PRJNA279991	Zebrafish Mespaa regulates miR 430 expression during gastrulation and initiates cardiac laterality	PRJNA279991	Other	Transcriptional events during initial vertebrate heart development in vivo remain poorly understood. Mesp1 a bHLH transcription factor has been described as the earliest transcriptional regulator of cardiac progenitors in multiple species and represents an excellent candidate for the investigation of relevant targets during cardiovascular development. We report here that both depletion and mutation of Mespaa the zebrafish homolog of mammalian Mesp1 lead to randomization of cardiac looping together with significant cardiac morphogenesis defects. These disruptions are preceded by a defect in cardiac left right asymmetry. Surprisingly the defect in asymmetry was found to occur independently of defects in the transient organ of laterality the Kupffer’s vesicle KV. We show that Mespaa regulates miR 430 expression during gastrulation to control the levels of Nodal signaling and that this regulation is required for asymmetric laterality signaling in the prospective heart field. Ectopic expression of miR 430 is sufficient to induce cardiac laterality defects and consistent with Mespaa over expression in this system the reduction of miR 430 leads to cardia bifida. This study reveals a novel transcriptional regulation of miR 430 by Mespaa and a role for this pathway in cardiac laterality during gastrulation.	Danio rerio injected with negative control morpholino 5.5hpf	Zebrafish injected with untargeted negative control morpholino	strain:Ekkwill\|dev stage:5.5 hpf\|sex:pooled male and female\|tissue:whole embryo\|BioSampleModel:Model organism or animal	Zebrafish Mespaa regulates miR 430 expression during gastrulation and initiates cardiac laterality	Zebrafish injected with untargeted negative control morpholino replicate 2	Zebrafish injected with untargeted negative control morpholino replicate 2	1	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina HiSeq 2000		SRP056748	loader:latf load	Std-230413_GTGTTA_L008_R1.fastq.gz Std-230413_GTGTTA_L008_R2.fastq.gz	fastq fastq	10015452496.0	49581448.0	RNAseq Danio rerio 5.5hpf negative control morpholino replicate2	0:101 1:101	A:2883382922;C:1998043392;G:2046542450;T:2937071125;N:150412607	101	101	2883382922	1998043392	2046542450	2937071125	150412607	SRX981061	SRS895863	SRA249481	Gladstone Institute\|Bioinformatics	Gladstone Institutes	2	0.8766	0.85002	0.17158	0.25762	0.77167	0.89057	0.64584	0.66342	101	101	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	United States	2016-03-31	Gastrula	Embryo	Whole Organism	All anatomical structures
39631	39631	SRR1947876	SRX981011	SRS895863	SRP056748	PRJNA279991	Zebrafish Mespaa regulates miR 430 expression during gastrulation and initiates cardiac laterality	PRJNA279991	Other	Transcriptional events during initial vertebrate heart development in vivo remain poorly understood. Mesp1 a bHLH transcription factor has been described as the earliest transcriptional regulator of cardiac progenitors in multiple species and represents an excellent candidate for the investigation of relevant targets during cardiovascular development. We report here that both depletion and mutation of Mespaa the zebrafish homolog of mammalian Mesp1 lead to randomization of cardiac looping together with significant cardiac morphogenesis defects. These disruptions are preceded by a defect in cardiac left right asymmetry. Surprisingly the defect in asymmetry was found to occur independently of defects in the transient organ of laterality the Kupffer’s vesicle KV. We show that Mespaa regulates miR 430 expression during gastrulation to control the levels of Nodal signaling and that this regulation is required for asymmetric laterality signaling in the prospective heart field. Ectopic expression of miR 430 is sufficient to induce cardiac laterality defects and consistent with Mespaa over expression in this system the reduction of miR 430 leads to cardia bifida. This study reveals a novel transcriptional regulation of miR 430 by Mespaa and a role for this pathway in cardiac laterality during gastrulation.	Danio rerio injected with negative control morpholino 5.5hpf	Zebrafish injected with untargeted negative control morpholino	strain:Ekkwill\|dev stage:5.5 hpf\|sex:pooled male and female\|tissue:whole embryo\|BioSampleModel:Model organism or animal	Zebrafish Mespaa regulates miR 430 expression during gastrulation and initiates cardiac laterality	Zebrafish injected with untargeted negative control morpholino	Zebrafish injected with untargeted negative control morpholino replicate 1	1	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina HiSeq 2000		SRP056748	loader:latf load	Std-190413_ACACGA_L008_R2.fastq.gz Std-190413_ACACGA_L008_R1.fastq.gz	fastq fastq	10412449358.0	51546779.0	RNAseq Danio rerio 5.5hpf negative control morpholino replicate1	0:101 1:101	A:2998996009;C:2064995108;G:2125498634;T:3066600855;N:156358752	101	101	2998996009	2064995108	2125498634	3066600855	156358752	SRX981011	SRS895863	SRA249481	Gladstone Institute\|Bioinformatics	Gladstone Institutes	2	0.87394	0.84802	0.15672	0.23447	0.77072	0.89049	0.63241	0.65533	101	101	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	United States	2016-03-31	Gastrula	Embryo	Whole Organism	All anatomical structures
39632	39632	SRR1947862	SRX974390	SRS889614	SRP056748	PRJNA279991	Zebrafish Mespaa regulates miR 430 expression during gastrulation and initiates cardiac laterality	PRJNA279991	Other	Transcriptional events during initial vertebrate heart development in vivo remain poorly understood. Mesp1 a bHLH transcription factor has been described as the earliest transcriptional regulator of cardiac progenitors in multiple species and represents an excellent candidate for the investigation of relevant targets during cardiovascular development. We report here that both depletion and mutation of Mespaa the zebrafish homolog of mammalian Mesp1 lead to randomization of cardiac looping together with significant cardiac morphogenesis defects. These disruptions are preceded by a defect in cardiac left right asymmetry. Surprisingly the defect in asymmetry was found to occur independently of defects in the transient organ of laterality the Kupffer’s vesicle KV. We show that Mespaa regulates miR 430 expression during gastrulation to control the levels of Nodal signaling and that this regulation is required for asymmetric laterality signaling in the prospective heart field. Ectopic expression of miR 430 is sufficient to induce cardiac laterality defects and consistent with Mespaa over expression in this system the reduction of miR 430 leads to cardia bifida. This study reveals a novel transcriptional regulation of miR 430 by Mespaa and a role for this pathway in cardiac laterality during gastrulation.	Danio rerio injected with mespaa morpholino 5.5hpf	Zebrafish injected with mespaa morpholino	strain:Ekkwill\|dev stage:5.5hpf\|sex:pooled male and female\|tissue:whole embryo\|BioSampleModel:Model organism or animal	Zebrafish Mespaa regulates miR 430 expression during gastrulation and initiates cardiac laterality	RNAseq analysis of mespaa knockdown embryos	Zebrafish injected with mespaa morpholino replicate 1	1	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina HiSeq 2000	<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>	SRP056748	loader:latf load	Mespa-190413_CACACA_L008_R2.fastq.gz Mespa-190413_CACACA_L008_R1.fastq.gz	fastq fastq	715965164.0	3668538.0	RNAseq Danio rerio 5.5hpf mespaa morpholino replicate1	0:101 1:101	A:203464307;C:144071219;G:148845038;T:209200873;N:10383727	101	101	203464307	144071219	148845038	209200873	10383727	SRX974390	SRS889614	SRA249481	Gladstone Institute\|Bioinformatics	Gladstone Institutes	2	0.86222	0.8307	0.14165	0.17545	0.7624	0.84415	0.65454	0.64758	101	101	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	United States	2015-04-07	Gastrula	Embryo	Whole Organism	All anatomical structures
41309	41309	SRR4242454	SRX2163334	SRS1691357	SRP089876	PRJNA341782	Danio rerio Phenotype or Genotype	PRJNA341782	Other	Based on the differential comparison of transcriptomes of Homo hetero zygote Het and wild type Wt in vivo protein trap mutagenesis system we have produced series of expression codex of the zebrafish. Here we reported the transcriptomic characteristic of a line with stable deficits found in homozygous Homo expressing the strongest signal of red fluorescent protein mRFP in the central neural system and vascular system.		ho 160	strain:TU\|isolate:homozygous\|age:3 dpf\|dev stage:3 dpf\|sex:not determined\|tissue:whole fish\|biomaterial provider:Intitute of Medical Sciences University of Toronto Toronto Canada. Xiao yan WEN\|birth date:2015 05 01\|genotype:homozygous\|phenotype:small head abnormal vascular system\|treatment:in vivo protein trap mutagenesis\|BioSampleModel:Model organism or animal	1	ho 160	ho 160	1	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	SINGLE	ILLUMINA	Illumina HiSeq 2000		SRP089876		HO.fq.gz	fastq	568688414.0	11605886.0	HO.fq.gz	0:49	A:146833011;C:136838940;G:142141532;T:142831489;N:43442	49		146833011	136838940	142141532	142831489	43442	SRX2163334	SRS1691357	SRA471230	Guangdong Ocean University\|Fisheries College	Guangdong Ocean University	1	0.92072		0.03662		0.79584		0.46051		49		B		usable mapping rate	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2016-09-14	Larval	Larval	Whole Organism	All anatomical structures
41310	41310	SRR4242453	SRX2163333	SRS1691356	SRP089876	PRJNA341782	Danio rerio Phenotype or Genotype	PRJNA341782	Other	Based on the differential comparison of transcriptomes of Homo hetero zygote Het and wild type Wt in vivo protein trap mutagenesis system we have produced series of expression codex of the zebrafish. Here we reported the transcriptomic characteristic of a line with stable deficits found in homozygous Homo expressing the strongest signal of red fluorescent protein mRFP in the central neural system and vascular system.		he 160	strain:TU\|isolate:heterozygous\|age:3 dpf\|dev stage:3 dpf\|sex:not determined\|tissue:whole fish\|biomaterial provider:Intitute of Medical Sciences University of Toronto Toronto Canada. Xiao yan WEN\|birth date:2015 05 01\|genotype:heterozygous\|phenotype:normal\|treatment:in vivo protein trap mutagenesis\|BioSampleModel:Model organism or animal	1	he 160	he 160	1	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	SINGLE	ILLUMINA	Illumina HiSeq 2000		SRP089876		HE.fq	fastq	578835432.0	11812968.0	HE.fq	0:49	A:149797321;C:137638814;G:143656076;T:147699087;N:44134	49		149797321	137638814	143656076	147699087	44134	SRX2163333	SRS1691356	SRA471230	Guangdong Ocean University\|Fisheries College	Guangdong Ocean University	1	0.96392		0.03868		0.71064		0.48997		49		B		usable mapping rate	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2016-09-19	Larval	Larval	Whole Organism	All anatomical structures
41311	41311	SRR4242452	SRX2163332	SRS1691355	SRP089876	PRJNA341782	Danio rerio Phenotype or Genotype	PRJNA341782	Other	Based on the differential comparison of transcriptomes of Homo hetero zygote Het and wild type Wt in vivo protein trap mutagenesis system we have produced series of expression codex of the zebrafish. Here we reported the transcriptomic characteristic of a line with stable deficits found in homozygous Homo expressing the strongest signal of red fluorescent protein mRFP in the central neural system and vascular system.		wt 160	strain:TU\|isolate:wild type\|age:3 dpf\|dev stage:3 dpf\|sex:not determined\|tissue:whole fish\|biomaterial provider:Intitute of Medical Sciences University of Toronto Toronto Canada. Xiao yan WEN\|birth date:2015 05 01\|genotype:wild type\|phenotype:normal\|BioSampleModel:Model organism or animal	1	wt 160	wt 160	1	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	SINGLE	ILLUMINA	Illumina HiSeq 2000		SRP089876		WT.fq.gz	fastq	582208151.0	11881799.0	WT.fq.gz	0:49	A:151848733;C:138129346;G:143758419;T:148430704;N:40949	49		151848733	138129346	143758419	148430704	40949	SRX2163332	SRS1691355	SRA471230	Guangdong Ocean University\|Fisheries College	Guangdong Ocean University	1	0.95342		0.04301		0.75503		0.48726		49		B		usable mapping rate	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2016-09-19	Larval	Larval	Whole Organism	All anatomical structures
41349	41349	SRR4330940	SRX2205508	SRS1723862	SRP090717	PRJNA345071	Transcriptome sequencing of zebrafish mutants	PRJNA345071	Other	To investigate the possible mechanism that NOD1 impacts larval survival in zebrafish we performed transcriptome analysis to explore NOD1 related signaling pathways. Zebrafish larvae from WT and NOD1 1IS / were collected at 10 dpf and used for transcriptome sequencing.		ZIS 3	strain:mutant biological replicate 3\|dev stage:10 dpf\|sex:pooled male and female\|tissue:larvae\|biomaterial provider:Chang MX\|birth date:2015 08\|breeding method:?artificial insemination\|BioSampleModel:Model organism or animal	RNA seq of zebrafish mutant at 10 dpf	ZIS 3	ZIS 3	1	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina HiSeq 4000		SRP090717		ZIS-3_S41_L003_R1_001.fastq ZIS-3_S41_L003_R2_001.fastq	fastq fastq	8951074036.0	29639318.0	ZIS 3 S41 L003 R1 001.fastq	0:151 1:151	A:2283207699;C:2181203331;G:2250920956;T:2233298555;N:2443495	151	151	2283207699	2181203331	2250920956	2233298555	2443495	SRX2205508	SRS1723862	SRA481515	Institute of Hydrobiology, Chinese Academy of Sciences\|Center for Fish Biology and Fishery Biotechnology	Institute of Hydrobiology, Chinese Academy of Sciences	2	0.94568	0.94599	0.04792	0.04705	0.68511	0.69191	0.48349	0.49441	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2019-12-31	Larval	Larval	Whole Organism	All anatomical structures
41350	41350	SRR4330939	SRX2205507	SRS1723861	SRP090717	PRJNA345071	Transcriptome sequencing of zebrafish mutants	PRJNA345071	Other	To investigate the possible mechanism that NOD1 impacts larval survival in zebrafish we performed transcriptome analysis to explore NOD1 related signaling pathways. Zebrafish larvae from WT and NOD1 1IS / were collected at 10 dpf and used for transcriptome sequencing.		ZIS 2	strain:mutant biological replicate 2\|dev stage:10 dpf\|sex:pooled male and female\|tissue:larvae\|biomaterial provider:Chang MX\|birth date:2015 08\|breeding method:?artificial insemination\|BioSampleModel:Model organism or animal	RNA seq of zebrafish mutant at 10 dpf	ZIS 2	ZIS 2	1	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina HiSeq 4000		SRP090717		ZIS-2_S40_L003_R1_001.fastq ZIS-2_S40_L003_R2_001.fastq	fastq fastq	9435991208.0	31245004.0	ZIS 2 S40 L003 R2 001.fastq	0:151 1:151	A:2432777029;C:2274473737;G:2351228268;T:2374883671;N:2628503	151	151	2432777029	2274473737	2351228268	2374883671	2628503	SRX2205507	SRS1723861	SRA481515	Institute of Hydrobiology, Chinese Academy of Sciences\|Center for Fish Biology and Fishery Biotechnology	Institute of Hydrobiology, Chinese Academy of Sciences	2	0.93852	0.93895	0.06814	0.06752	0.67464	0.68185	0.4731	0.48737	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2019-12-31	Larval	Larval	Whole Organism	All anatomical structures
41351	41351	SRR4330938	SRX2205506	SRS1723859	SRP090717	PRJNA345071	Transcriptome sequencing of zebrafish mutants	PRJNA345071	Other	To investigate the possible mechanism that NOD1 impacts larval survival in zebrafish we performed transcriptome analysis to explore NOD1 related signaling pathways. Zebrafish larvae from WT and NOD1 1IS / were collected at 10 dpf and used for transcriptome sequencing.		ZIS 1	strain:mutant biological replicate 1\|dev stage:10 dpf\|sex:pooled male and female\|tissue:larvae\|biomaterial provider:Chang MX\|birth date:2015 08\|breeding method:?artificial insemination\|BioSampleModel:Model organism or animal	RNA seq of zebrafish mutant at 10 dpf	ZIS 1	ZIS 1	1	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina HiSeq 4000		SRP090717		ZIS-1_S58_L004_R1_001.fastq ZIS-1_S58_L004_R2_001.fastq	fastq fastq	9474125956.0	31371278.0	ZIS 1 S58 L004 R1 001.fastq	0:151 1:151	A:2432127105;C:2294541938;G:2369906198;T:2374445988;N:3104727	151	151	2432127105	2294541938	2369906198	2374445988	3104727	SRX2205506	SRS1723859	SRA481515	Institute of Hydrobiology, Chinese Academy of Sciences\|Center for Fish Biology and Fishery Biotechnology	Institute of Hydrobiology, Chinese Academy of Sciences	2	0.94217	0.94136	0.05812	0.05769	0.67957	0.68665	0.48986	0.48912	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2019-12-31	Larval	Larval	Whole Organism	All anatomical structures
41352	41352	SRR4330937	SRX2205505	SRS1723863	SRP090717	PRJNA345071	Transcriptome sequencing of zebrafish mutants	PRJNA345071	Other	To investigate the possible mechanism that NOD1 impacts larval survival in zebrafish we performed transcriptome analysis to explore NOD1 related signaling pathways. Zebrafish larvae from WT and NOD1 1IS / were collected at 10 dpf and used for transcriptome sequencing.		WT 3	strain:wild type biological replicate 3\|dev stage:10 dpf\|sex:pooled male and female\|tissue:larvae\|biomaterial provider:Chang MX\|birth date:2015 08\|breeding method:?artificial insemination\|BioSampleModel:Model organism or animal	RNA seq of zebrafish wildtype at 10 dpf	WT 3	WT 3	1	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina HiSeq 4000		SRP090717		WT-3_S59_L004_R1_001.fastq WT-3_S59_L004_R2_001.fastq	fastq fastq	9459728710.0	31323605.0	WT 3 S59 L004 R2 001.fastq	0:151 1:151	A:2435834973;C:2283457751;G:2353515662;T:2383834638;N:3085686	151	151	2435834973	2283457751	2353515662	2383834638	3085686	SRX2205505	SRS1723863	SRA481515	Institute of Hydrobiology, Chinese Academy of Sciences\|Center for Fish Biology and Fishery Biotechnology	Institute of Hydrobiology, Chinese Academy of Sciences	2	0.93703	0.93671	0.06932	0.06902	0.67815	0.68527	0.49406	0.48629	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2019-12-31	Larval	Larval	Whole Organism	All anatomical structures
41353	41353	SRR4330936	SRX2205504	SRS1723860	SRP090717	PRJNA345071	Transcriptome sequencing of zebrafish mutants	PRJNA345071	Other	To investigate the possible mechanism that NOD1 impacts larval survival in zebrafish we performed transcriptome analysis to explore NOD1 related signaling pathways. Zebrafish larvae from WT and NOD1 1IS / were collected at 10 dpf and used for transcriptome sequencing.		WT 2	strain:wild type biological replicate 2\|dev stage:10 dpf\|sex:pooled male and female\|tissue:larvae\|biomaterial provider:Chang MX\|birth date:2015 08\|breeding method:?artificial insemination\|BioSampleModel:Model organism or animal	RNA seq of zebrafish wildtype at 10 dpf	WT 2	WT 2	1	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina HiSeq 4000		SRP090717		WT-2_S39_L003_R1_001.fastq WT-2_S39_L003_R2_001.fastq	fastq fastq	8115257628.0	26871714.0	WT 2 S39 L003 R1 001.fastq	0:151 1:151	A:2056302105;C:1991691115;G:2061808328;T:2003236611;N:2219469	151	151	2056302105	1991691115	2061808328	2003236611	2219469	SRX2205504	SRS1723860	SRA481515	Institute of Hydrobiology, Chinese Academy of Sciences\|Center for Fish Biology and Fishery Biotechnology	Institute of Hydrobiology, Chinese Academy of Sciences	2	0.9479	0.94848	0.03505	0.0349	0.69946	0.70638	0.4871	0.48737	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2019-12-31	Larval	Larval	Whole Organism	All anatomical structures
41354	41354	SRR4330935	SRX2205503	SRS1723858	SRP090717	PRJNA345071	Transcriptome sequencing of zebrafish mutants	PRJNA345071	Other	To investigate the possible mechanism that NOD1 impacts larval survival in zebrafish we performed transcriptome analysis to explore NOD1 related signaling pathways. Zebrafish larvae from WT and NOD1 1IS / were collected at 10 dpf and used for transcriptome sequencing.		WT 1	strain:wild type biological replicate 1\|dev stage:10 dpf\|sex:pooled male and female\|tissue:larvae\|biomaterial provider:Chang MX\|birth date:2015 08\|breeding method:?artificial insemination\|BioSampleModel:Model organism or animal	RNA seq of zebrafish wildtype at 10 dpf	WT 1	WT 1	To investigate the possible mechanism that NOD1 impacts larval survival in zebrafish we performed transcriptome analysis to explore NOD1 related signaling pathways. Zebrafish larvae from WT and NOD1 1IS / were collected at 10 dpf and used for transcriptome sequencing.	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina HiSeq 4000		SRP090717		WT-1_S38_L003_R1_001.fastq WT-1_S38_L003_R2_001.fastq	fastq fastq	9771991274.0	32357587.0	WT 1 S38 L003 R2 001.fastq	0:151 1:151	A:2524417259;C:2348903783;G:2421563752;T:2474419170;N:2687310	151	151	2524417259	2348903783	2421563752	2474419170	2687310	SRX2205503	SRS1723858	SRA481515	Institute of Hydrobiology, Chinese Academy of Sciences\|Center for Fish Biology and Fishery Biotechnology	Institute of Hydrobiology, Chinese Academy of Sciences	2	0.93787	0.93896	0.0697	0.06907	0.67446	0.68162	0.49385	0.49554	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2019-12-31	Larval	Larval	Whole Organism	All anatomical structures
41603	41603	SRR5086607	SRX2403900	SRS1843204	SRP094738	PRJNA356682	Transcriptome sequencing of zebrafish mutants with or without xxx tarda infection	PRJNA356682	Other	To investigate the possible mechanism that NOD1/RIP2 impacts larval survival in zebrafish under infectious condition we performed transcriptome analysis. Zebrafish larvae from WT NOD1 / and RIP / were infected with Edwardsiella tarda and collected at 24 hours post infection hpi.		RIP2 Etarda 2	isolate:RIP2 mutant biological replicate 2\|age:7 dpf\|dev stage:larvae\|sex:pooled male and female\|tissue:larvae\|biomaterial provider:Chang MX\|birth date:2016 3\|BioSampleModel:Model organism or animal	RNA seq of zebrafish RIP2 mutant at 7 dpf	RIP2 Etarda 2	RIP2 Etarda 2	1	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina HiSeq 4000		SRP094738		S231_07B_CHG009012-0413lane6-RP-E-tarda-2_L003_R2.fastq.gz S231_07B_CHG009012-0413lane6-RP-E-tarda-2_L003_R1.fastq.gz	fastq fastq	12903564000.0	43011880.0	S231 07B CHG009012 0413lane6 RP E tarda 2 L003 R1.fastq.gz	0:150 1:150	A:3540121379;C:2905716861;G:3027503729;T:3429809429;N:412602	150	150	3540121379	2905716861	3027503729	3429809429	412602	SRX2403900	SRS1843204	SRA501516	Institute of Hydrobiology, Chinese Academy of Sciences\|Center for Fish Biology and Fishery Biotechnology	Institute of Hydrobiology, Chinese Academy of Sciences	2	0.91895	0.92448	0.22816	0.22865	0.6873	0.69104	0.59821	0.59683	150	150	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2016-12-08	Larval	Larval	Whole Organism	All anatomical structures
41604	41604	SRR5086606	SRX2403899	SRS1843203	SRP094738	PRJNA356682	Transcriptome sequencing of zebrafish mutants with or without xxx tarda infection	PRJNA356682	Other	To investigate the possible mechanism that NOD1/RIP2 impacts larval survival in zebrafish under infectious condition we performed transcriptome analysis. Zebrafish larvae from WT NOD1 / and RIP / were infected with Edwardsiella tarda and collected at 24 hours post infection hpi.		NOD1 Etarda 1	isolate:NOD1 mutant biological replicate 1\|age:7 dpf\|dev stage:larvae\|sex:pooled male and female\|tissue:larvae\|biomaterial provider:Chang MX\|birth date:2016 3\|BioSampleModel:Model organism or animal	RNA seq of zebrafish NOD1 mutant at 7 dpf	NOD1 Etarda 1	NOD1 Etarda 1	1	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina HiSeq 4000		SRP094738		S231_07B_CHG009012-0413lane6-ND-E-tarda-1_L003_R1.fastq.gz S231_07B_CHG009012-0413lane6-ND-E-tarda-1_L003_R2.fastq.gz	fastq fastq	12320572500.0	41068575.0	S231 07B CHG009012 0413lane6 ND E tarda 1 L003 R1.fastq.gz	0:150 1:150	A:3355646078;C:2797387103;G:2920550779;T:3246590603;N:397937	150	150	3355646078	2797387103	2920550779	3246590603	397937	SRX2403899	SRS1843203	SRA501516	Institute of Hydrobiology, Chinese Academy of Sciences\|Center for Fish Biology and Fishery Biotechnology	Institute of Hydrobiology, Chinese Academy of Sciences	2	0.86604	0.87043	0.20071	0.20146	0.69369	0.69869	0.5907	0.59843	150	150	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2020-11-27	Larval	Larval	Whole Organism	All anatomical structures
41605	41605	SRR5086605	SRX2403898	SRS1843202	SRP094738	PRJNA356682	Transcriptome sequencing of zebrafish mutants with or without xxx tarda infection	PRJNA356682	Other	To investigate the possible mechanism that NOD1/RIP2 impacts larval survival in zebrafish under infectious condition we performed transcriptome analysis. Zebrafish larvae from WT NOD1 / and RIP / were infected with Edwardsiella tarda and collected at 24 hours post infection hpi.		NOD1 Etarda 2	isolate:NOD1 mutant biological replicate 2\|age:7 dpf\|dev stage:larvae\|sex:pooled male and female\|tissue:larvae\|biomaterial provider:Chang MX\|birth date:2016 3\|BioSampleModel:Model organism or animal	RNA seq of zebrafish NOD1 mutant at 7 dpf	NOD1 Etarda 2	NOD1 Etarda 2	1	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina HiSeq 4000		SRP094738		S231_07B_CHG009012-0413lane6-ND-E-tarda-2_L003_R1.fastq.gz S231_07B_CHG009012-0413lane6-ND-E-tarda-2_L003_R2.fastq.gz	fastq fastq	15551299800.0	51837666.0	S231 07B CHG009012 0413lane6 ND E tarda 2 L003 R1.fastq.gz	0:150 1:150	A:4265070757;C:3495006741;G:3648563581;T:4142124454;N:534267	150	150	4265070757	3495006741	3648563581	4142124454	534267	SRX2403898	SRS1843202	SRA501516	Institute of Hydrobiology, Chinese Academy of Sciences\|Center for Fish Biology and Fishery Biotechnology	Institute of Hydrobiology, Chinese Academy of Sciences	2	0.86759	0.86834	0.23528	0.23586	0.68779	0.69272	0.57804	0.57769	150	150	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2020-11-27	Larval	Larval	Whole Organism	All anatomical structures
41606	41606	SRR5086604	SRX2403897	SRS1843201	SRP094738	PRJNA356682	Transcriptome sequencing of zebrafish mutants with or without xxx tarda infection	PRJNA356682	Other	To investigate the possible mechanism that NOD1/RIP2 impacts larval survival in zebrafish under infectious condition we performed transcriptome analysis. Zebrafish larvae from WT NOD1 / and RIP / were infected with Edwardsiella tarda and collected at 24 hours post infection hpi.		RIP2 Etarda 3	isolate:RIP2 mutant biological replicate 3\|age:7 dpf\|dev stage:larvae\|sex:pooled male and female\|tissue:larvae\|biomaterial provider:Chang MX\|birth date:2016 3\|BioSampleModel:Model organism or animal	RNA seq of zebrafish RIP2 mutant at 7 dpf	RIP2 Etarda 3	RIP2 Etarda 3	1	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina HiSeq 4000		SRP094738		S231_07B_CHG009012-0413lane6-RP-E-tarda-3_L003_R1.fastq.gz S231_07B_CHG009012-0413lane6-RP-E-tarda-3_L003_R2.fastq.gz	fastq fastq	12144058200.0	40480194.0	S231 07B CHG009012 0413lane6 RP E tarda 3 L003 R1.fastq.gz	0:150 1:150	A:3277198817;C:2779538400;G:2897367228;T:3189540397;N:413358	150	150	3277198817	2779538400	2897367228	3189540397	413358	SRX2403897	SRS1843201	SRA501516	Institute of Hydrobiology, Chinese Academy of Sciences\|Center for Fish Biology and Fishery Biotechnology	Institute of Hydrobiology, Chinese Academy of Sciences	2	0.91654	0.9175	0.25593	0.25637	0.68795	0.69414	0.56468	0.56806	150	150	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2020-11-27	Larval	Larval	Whole Organism	All anatomical structures
41607	41607	SRR5086603	SRX2403896	SRS1843200	SRP094738	PRJNA356682	Transcriptome sequencing of zebrafish mutants with or without xxx tarda infection	PRJNA356682	Other	To investigate the possible mechanism that NOD1/RIP2 impacts larval survival in zebrafish under infectious condition we performed transcriptome analysis. Zebrafish larvae from WT NOD1 / and RIP / were infected with Edwardsiella tarda and collected at 24 hours post infection hpi.		WT Etarda 3	isolate:wild type biological replicate 3\|age:7 dpf\|dev stage:larvae\|sex:pooled male and female\|tissue:larvae\|biomaterial provider:Chang MX\|birth date:2016 3\|BioSampleModel:Model organism or animal	RNA seq of zebrafish wildtype at 7 dpf	WT Etarda 3	WT Etarda 3	1	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina HiSeq 4000		SRP094738		S231_07B_CHG009012-0413lane6-WT-E-tarda-3_L003_R1.fastq.gz S231_07B_CHG009012-0413lane6-WT-E-tarda-3_L003_R2.fastq.gz	fastq fastq	13158784200.0	43862614.0	S231 07B CHG009012 0413lane6 WT E tarda 3 L003 R1.fastq.gz	0:150 1:150	A:3492740553;C:3076792456;G:3216533074;T:3372287751;N:430366	150	150	3492740553	3076792456	3216533074	3372287751	430366	SRX2403896	SRS1843200	SRA501516	Institute of Hydrobiology, Chinese Academy of Sciences\|Center for Fish Biology and Fishery Biotechnology	Institute of Hydrobiology, Chinese Academy of Sciences	2	0.91602	0.92416	0.23246	0.23514	0.68164	0.68663	0.55407	0.55215	150	150	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2020-11-27	Larval	Larval	Whole Organism	All anatomical structures
41608	41608	SRR5086602	SRX2403895	SRS1843199	SRP094738	PRJNA356682	Transcriptome sequencing of zebrafish mutants with or without xxx tarda infection	PRJNA356682	Other	To investigate the possible mechanism that NOD1/RIP2 impacts larval survival in zebrafish under infectious condition we performed transcriptome analysis. Zebrafish larvae from WT NOD1 / and RIP / were infected with Edwardsiella tarda and collected at 24 hours post infection hpi.		WT Etarda 1	isolate:wild type biological replicate 1\|age:7 dpf\|dev stage:larvae\|sex:pooled male and female\|tissue:larvae\|biomaterial provider:Chang MX\|birth date:2016 3\|BioSampleModel:Model organism or animal	RNA seq of zebrafish wildtype at 7dpf	WT Etarda 1	WT Etarda 1	To investigate the possible mechanism that NOD1/RIP2 impacts larval survival in zebrafish under infectious condition we performed transcriptome analysis. Zebrafish larvae from WT NOD1 / and RIP / were infected with Edwardsiella tarda and collected at 24 hours post infection hpi.	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina HiSeq 4000		SRP094738		S231_07B_CHG009012-0413lane6-WT-E-tarda-1_L003_R1.fastq.gz S231_07B_CHG009012-0413lane6-WT-E-tarda-1_L003_R2.fastq.gz	fastq fastq	11991766500.0	39972555.0	S231 07B CHG009012 0413lane6 WT E tarda 1 L003 R1.fastq.gz	0:150 1:150	A:3282107515;C:2699757677;G:2810716102;T:3198780035;N:405171	150	150	3282107515	2699757677	2810716102	3198780035	405171	SRX2403895	SRS1843199	SRA501516	Institute of Hydrobiology, Chinese Academy of Sciences\|Center for Fish Biology and Fishery Biotechnology	Institute of Hydrobiology, Chinese Academy of Sciences	2	0.91731	0.91778	0.23094	0.23042	0.6784	0.68596	0.59413	0.59241	150	150	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2020-11-27	Larval	Larval	Whole Organism	All anatomical structures
41609	41609	SRR5086601	SRX2403894	SRS1843198	SRP094738	PRJNA356682	Transcriptome sequencing of zebrafish mutants with or without xxx tarda infection	PRJNA356682	Other	To investigate the possible mechanism that NOD1/RIP2 impacts larval survival in zebrafish under infectious condition we performed transcriptome analysis. Zebrafish larvae from WT NOD1 / and RIP / were infected with Edwardsiella tarda and collected at 24 hours post infection hpi.		NOD1 Etarda 3	isolate:NOD1 mutant biological replicate 3\|age:7 dpf\|dev stage:larvae\|sex:pooled male and female\|tissue:larvae\|biomaterial provider:Chang MX\|birth date:2016 3\|BioSampleModel:Model organism or animal	RNA seq of zebrafish NOD1 mutant at 7 dpf	NOD1 Etarda 3	NOD1 Etarda 3	1	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina HiSeq 4000		SRP094738		S231_07B_CHG009012-0413lane6-ND-E-tarda-3_L003_R1.fastq.gz S231_07B_CHG009012-0413lane6-ND-E-tarda-3_L003_R2.fastq.gz	fastq fastq	13231011300.0	44103371.0	S231 07B CHG009012 0413lane6 ND E tarda 3 L003 R1.fastq.gz	0:150 1:150	A:3583948856;C:3022120866;G:3144073054;T:3480438095;N:430429	150	150	3583948856	3022120866	3144073054	3480438095	430429	SRX2403894	SRS1843198	SRA501516	Institute of Hydrobiology, Chinese Academy of Sciences\|Center for Fish Biology and Fishery Biotechnology	Institute of Hydrobiology, Chinese Academy of Sciences	2	0.8625	0.86327	0.21095	0.21123	0.69126	0.69808	0.59807	0.59873	150	150	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2020-11-27	Larval	Larval	Whole Organism	All anatomical structures
41610	41610	SRR5086600	SRX2403893	SRS1843197	SRP094738	PRJNA356682	Transcriptome sequencing of zebrafish mutants with or without xxx tarda infection	PRJNA356682	Other	To investigate the possible mechanism that NOD1/RIP2 impacts larval survival in zebrafish under infectious condition we performed transcriptome analysis. Zebrafish larvae from WT NOD1 / and RIP / were infected with Edwardsiella tarda and collected at 24 hours post infection hpi.		WT Etarda 2	isolate:wild type biological replicate 2\|age:7 dpf\|dev stage:larvae\|sex:pooled male and female\|tissue:larvae\|biomaterial provider:Chang MX\|birth date:2016 3\|BioSampleModel:Model organism or animal	RNA seq of zebrafish wildtype at 7 dpf	WT Etarda 2	WT Etarda 2	1	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina HiSeq 4000		SRP094738		S231_07B_CHG009012-0413lane6-WT-E-tarda-2_L003_R1.fastq.gz S231_07B_CHG009012-0413lane6-WT-E-tarda-2_L003_R2.fastq.gz	fastq fastq	11385997200.0	37953324.0	S231 07B CHG009012 0413lane6 WT E tarda 2 L003 R1.fastq.gz	0:150 1:150	A:3100666193;C:2581361422;G:2676308702;T:3027299840;N:361043	150	150	3100666193	2581361422	2676308702	3027299840	361043	SRX2403893	SRS1843197	SRA501516	Institute of Hydrobiology, Chinese Academy of Sciences\|Center for Fish Biology and Fishery Biotechnology	Institute of Hydrobiology, Chinese Academy of Sciences	2	0.91592	0.91843	0.23215	0.23276	0.67894	0.6843	0.56756	0.57405	150	150	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2020-11-27	Larval	Larval	Whole Organism	All anatomical structures
41611	41611	SRR5086599	SRX2403892	SRS1843196	SRP094738	PRJNA356682	Transcriptome sequencing of zebrafish mutants with or without xxx tarda infection	PRJNA356682	Other	To investigate the possible mechanism that NOD1/RIP2 impacts larval survival in zebrafish under infectious condition we performed transcriptome analysis. Zebrafish larvae from WT NOD1 / and RIP / were infected with Edwardsiella tarda and collected at 24 hours post infection hpi.		RIP2 Etarda 1	isolate:RIP2 mutant biological replicate 1\|age:7 dpf\|dev stage:larvae\|sex:pooled male and female\|tissue:larvae\|biomaterial provider:Chang MX\|birth date:2016 3\|BioSampleModel:Model organism or animal	RNA seq of zebrafish RIP2 mutant at 7 dpf	RIP2 Etarda 1	RIP2 Etarda 1	1	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina HiSeq 4000		SRP094738		S231_07B_CHG009012-0413lane6-RP-E-tarda-1_L003_R1.fastq.gz S231_07B_CHG009012-0413lane6-RP-E-tarda-1_L003_R2.fastq.gz	fastq fastq	12517987200.0	41726624.0	S231 07B CHG009012 0413lane6 RP E tarda 1 L003 R1.fastq.gz	0:150 1:150	A:3383702176;C:2864897363;G:2969958296;T:3299042555;N:386810	150	150	3383702176	2864897363	2969958296	3299042555	386810	SRX2403892	SRS1843196	SRA501516	Institute of Hydrobiology, Chinese Academy of Sciences\|Center for Fish Biology and Fishery Biotechnology	Institute of Hydrobiology, Chinese Academy of Sciences	2	0.92847	0.93046	0.20764	0.20908	0.68217	0.68889	0.58846	0.59063	150	150	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2020-11-27	Larval	Larval	Whole Organism	All anatomical structures
41754	41754	SRR5131065	SRX2444929	SRS1878801	SRP095651	PRJNA358793	Transcriptome sequencing of zebrafish RIP2 mutants	PRJNA358793	Other	Zebrafish larvae from wildtype and RIP2 / were collected at 7 dpf and used for transcriptome sequencing.		control 3	isolate:wild type biological replicate 3\|age:7 dpf\|dev stage:larvae\|sex:pooled male and female\|tissue:larvae\|biomaterial provider:Chang MX\|birth date:2016 3\|BioSampleModel:Model organism or animal	RNA seq of zebrafish wildtype at 7 dpf	control 3	control 3	1	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina HiSeq 4000		SRP095651		S231_07B_CHG009010-0413lane4-WT-3_L001_R2.fastq.gz S231_07B_CHG009010-0413lane4-WT-3_L001_R1.fastq.gz	fastq fastq	7170870300.0	23902901.0	S231 07B CHG009010 0413lane4 WT 3 L001 R2.fastq.gz	0:150 1:150	A:1861223343;C:1713993670;G:1720465419;T:1875067010;N:120858	150	150	1861223343	1713993670	1720465419	1875067010	120858	SRX2444929	SRS1878801	SRA510115	Institute of Hydrobiology, Chinese Academy of Sciences\|Center for Fish Biology and Fishery Biotechnology	Institute of Hydrobiology, Chinese Academy of Sciences	2	0.93719	0.93331	0.07804	0.07734	0.66478	0.67152	0.48991	0.48846	150	150	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2016-12-25	Larval	Larval	Whole Organism	All anatomical structures
41755	41755	SRR5131064	SRX2444928	SRS1878800	SRP095651	PRJNA358793	Transcriptome sequencing of zebrafish RIP2 mutants	PRJNA358793	Other	Zebrafish larvae from wildtype and RIP2 / were collected at 7 dpf and used for transcriptome sequencing.		RP 3	isolate:RIP2 mutant biological replicate 3\|age:7 dpf\|dev stage:larvae\|sex:pooled male and female\|tissue:larvae\|biomaterial provider:Chang MX\|birth date:2016 3\|BioSampleModel:Model organism or animal	RNA seq of zebrafish RIP2 mutant at 7 dpf	RP 3	RP 3	1	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina HiSeq 4000		SRP095651		S231_07B_CHG009010-0413lane4-RP-3_L001_R1.fastq.gz S231_07B_CHG009010-0413lane4-RP-3_L001_R2.fastq.gz	fastq fastq	7468205400.0	24894018.0	S231 07B CHG009010 0413lane4 RP 3 L001 R1.fastq.gz	0:150 1:150	A:1923116988;C:1800729614;G:1804880487;T:1939349442;N:128869	150	150	1923116988	1800729614	1804880487	1939349442	128869	SRX2444928	SRS1878800	SRA510115	Institute of Hydrobiology, Chinese Academy of Sciences\|Center for Fish Biology and Fishery Biotechnology	Institute of Hydrobiology, Chinese Academy of Sciences	2	0.94182	0.93791	0.07003	0.06911	0.67391	0.68032	0.48725	0.48383	150	150	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2020-12-21	Larval	Larval	Whole Organism	All anatomical structures
41756	41756	SRR5131063	SRX2444927	SRS1878799	SRP095651	PRJNA358793	Transcriptome sequencing of zebrafish RIP2 mutants	PRJNA358793	Other	Zebrafish larvae from wildtype and RIP2 / were collected at 7 dpf and used for transcriptome sequencing.		control 1	isolate:wild type biological replicate 1\|age:7 dpf\|dev stage:larvae\|sex:pooled male and female\|tissue:larvae\|biomaterial provider:Chang MX\|birth date:2016 3\|BioSampleModel:Model organism or animal	RNA seq of zebrafish wildtype at 7dpf	control 1	control 1	To investigate the possible mechanism that RIP2 impacts immune response in zebrafish we performed transcriptome analysis. Zebrafish larvae from WT and RIP / were collected at 7 dpf.	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina HiSeq 4000		SRP095651		S231_07B_CHG009010-0413lane4-WT-1_L001_R1.fastq.gz S231_07B_CHG009010-0413lane4-WT-1_L001_R2.fastq.gz	fastq fastq	7794774600.0	25982582.0	S231 07B CHG009010 0413lane4 WT 1 L001 R1.fastq.gz	0:150 1:150	A:2030478380;C:1854310335;G:1862519444;T:2047324790;N:141651	150	150	2030478380	1854310335	1862519444	2047324790	141651	SRX2444927	SRS1878799	SRA510115	Institute of Hydrobiology, Chinese Academy of Sciences\|Center for Fish Biology and Fishery Biotechnology	Institute of Hydrobiology, Chinese Academy of Sciences	2	0.94149	0.93653	0.07296	0.07218	0.66614	0.67294	0.49615	0.48813	150	150	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2020-12-21	Larval	Larval	Whole Organism	All anatomical structures
41757	41757	SRR5131062	SRX2444926	SRS1878798	SRP095651	PRJNA358793	Transcriptome sequencing of zebrafish RIP2 mutants	PRJNA358793	Other	Zebrafish larvae from wildtype and RIP2 / were collected at 7 dpf and used for transcriptome sequencing.		control 2	isolate:wild type biological replicate 2\|age:7 dpf\|dev stage:larvae\|sex:pooled male and female\|tissue:larvae\|biomaterial provider:Chang MX\|birth date:2016 3\|BioSampleModel:Model organism or animal	RNA seq of zebrafish wildtype at 7 dpf	control 2	control 2	1	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina HiSeq 4000		SRP095651		S231_07B_CHG009010-0413lane4-WT-2_L001_R1.fastq.gz S231_07B_CHG009010-0413lane4-WT-2_L001_R2.fastq.gz	fastq fastq	5623326600.0	18744422.0	S231 07B CHG009010 0413lane4 WT 2 L001 R2.fastq.gz	0:150 1:150	A:1451164902;C:1350358314;G:1359170147;T:1462531546;N:101691	150	150	1451164902	1350358314	1359170147	1462531546	101691	SRX2444926	SRS1878798	SRA510115	Institute of Hydrobiology, Chinese Academy of Sciences\|Center for Fish Biology and Fishery Biotechnology	Institute of Hydrobiology, Chinese Academy of Sciences	2	0.93864	0.93904	0.06797	0.06755	0.67048	0.67521	0.49371	0.48819	150	150	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2020-12-21	Larval	Larval	Whole Organism	All anatomical structures
41758	41758	SRR5131061	SRX2444925	SRS1878797	SRP095651	PRJNA358793	Transcriptome sequencing of zebrafish RIP2 mutants	PRJNA358793	Other	Zebrafish larvae from wildtype and RIP2 / were collected at 7 dpf and used for transcriptome sequencing.		RP 1	isolate:RIP2 mutant biological replicate 1\|age:7 dpf\|dev stage:larvae\|sex:pooled male and female\|tissue:larvae\|biomaterial provider:Chang MX\|birth date:2016 3\|BioSampleModel:Model organism or animal	RNA seq of zebrafish RIP2 mutant at 7 dpf	RP 1	RP 1	1	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina HiSeq 4000		SRP095651		S231_07B_CHG009010-0413lane4-RP-1_L001_R1.fastq.gz S231_07B_CHG009010-0413lane4-RP-1_L001_R2.fastq.gz	fastq fastq	8583762600.0	28612542.0	S231 07B CHG009010 0413lane4 RP 1 L001 R2.fastq.gz	0:150 1:150	A:2233488442;C:2047436003;G:2053585249;T:2249097620;N:155286	150	150	2233488442	2047436003	2053585249	2249097620	155286	SRX2444925	SRS1878797	SRA510115	Institute of Hydrobiology, Chinese Academy of Sciences\|Center for Fish Biology and Fishery Biotechnology	Institute of Hydrobiology, Chinese Academy of Sciences	2	0.94045	0.93559	0.08356	0.0825	0.66576	0.67188	0.48456	0.48745	150	150	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2020-12-21	Larval	Larval	Whole Organism	All anatomical structures
41759	41759	SRR5131060	SRX2444924	SRS1878796	SRP095651	PRJNA358793	Transcriptome sequencing of zebrafish RIP2 mutants	PRJNA358793	Other	Zebrafish larvae from wildtype and RIP2 / were collected at 7 dpf and used for transcriptome sequencing.		RP 2	isolate:RIP2 mutant biological replicate 2\|age:7 dpf\|dev stage:larvae\|sex:pooled male and female\|tissue:larvae\|biomaterial provider:Chang MX\|birth date:2016 3\|BioSampleModel:Model organism or animal	RNA seq of zebrafish RIP2 mutant at 7 dpf	RP 2	RP 2	1	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina HiSeq 4000		SRP095651		S231_07B_CHG009010-0413lane4-RP-2_L001_R1.fastq.gz S231_07B_CHG009010-0413lane4-RP-2_L001_R2.fastq.gz	fastq fastq	6660884700.0	22202949.0	S231 07B CHG009010 0413lane4 RP 2 L001 R1.fastq.gz	0:150 1:150	A:1716524391;C:1604826566;G:1610050455;T:1729364340;N:118948	150	150	1716524391	1604826566	1610050455	1729364340	118948	SRX2444924	SRS1878796	SRA510115	Institute of Hydrobiology, Chinese Academy of Sciences\|Center for Fish Biology and Fishery Biotechnology	Institute of Hydrobiology, Chinese Academy of Sciences	2	0.94509	0.94069	0.07191	0.0702	0.67322	0.68045	0.4937	0.4864	150	150	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2020-12-21	Larval	Larval	Whole Organism	All anatomical structures
60445	60445	SRR12272862	SRX8777892	SRS7048444	SRP272672	PRJNA647444	mRNA and miRNA Seq in offspring post parental exposure to an antibiotic mixturemiRNA	PRJNA647444	Other	Zebrafish embryos were exposed to environmentally relevant levels 1 and 100 ug/L of antibiotic mixtures 15 of the most commonly detected antibiotics for 150 days until sexual maturation. miRNA mRNA network analysis in offspring post parental exposure to an antibiotic mixture.	C2	C2 C2 2 4	replicate:biological replicate 2\|strain:AB\|isolate:C2\|breed:not applicable\|cultivar:not applicable\|ecotype:not applicable\|age:not applicable\|dev stage:not applicable\|sex:pooled male and female\|tissue:the whole\|collection date:2019 11 01\|geo loc name:China: Shenzhen Guangdong\|phenotype:100ug/L\|BioSampleModel:Model organism or animal	RNA seq of zebrafish	C2C220200712	C2C220200712	RNA seq of zebrafish in different conditions	miRNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	SINGLE	BGISEQ	BGISEQ-500		SRP272672	loader:fastq load.py	C2_C2_2_4.fq	fastq	542610936.0	21965958.0	C2 C2 2 4.fq.gz	0:24.70	A:95221617;C:122628624;G:167025611;T:157730855;N:4229	24		95221617	122628624	167025611	157730855	4229	SRX8777892	SRS7048444	SRA1101037	Southern University of Science and Technology\|School of Environmental Science and Engineering	Southern University of Science and Technology	1	0.8119		0.10745		0.85717		0.51338		22		B		usable mapping rate	bgi	bgi	unknown	random_priming	unknown	bulk	unknown	unknown	China	2020-08-05	Undetermined	Embryo	Whole Organism	All anatomical structures
60446	60446	SRR12272863	SRX8777891	SRS7048443	SRP272672	PRJNA647444	mRNA and miRNA Seq in offspring post parental exposure to an antibiotic mixturemiRNA	PRJNA647444	Other	Zebrafish embryos were exposed to environmentally relevant levels 1 and 100 ug/L of antibiotic mixtures 15 of the most commonly detected antibiotics for 150 days until sexual maturation. miRNA mRNA network analysis in offspring post parental exposure to an antibiotic mixture.	C2	C2 C2 1 4	replicate:biological replicate 1\|strain:AB\|isolate:C2\|breed:not applicable\|cultivar:not applicable\|ecotype:not applicable\|age:not applicable\|dev stage:not applicable\|sex:pooled male and female\|tissue:the whole\|collection date:2019 11 01\|geo loc name:China: Shenzhen Guangdong\|phenotype:100ug/L\|BioSampleModel:Model organism or animal	RNA seq of zebrafish	C2C220200711	C2C220200711	RNA seq of zebrafish in different conditions	miRNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	SINGLE	BGISEQ	BGISEQ-500		SRP272672	loader:fastq load.py	C2_C2_1_4.fq	fastq	542847476.0	22614181.0	C2 C2 1 4.fq.gz	0:24.00	A:99999101;C:125407906;G:162383758;T:155055099;N:1612	24		99999101	125407906	162383758	155055099	1612	SRX8777891	SRS7048443	SRA1101037	Southern University of Science and Technology\|School of Environmental Science and Engineering	Southern University of Science and Technology	1	0.84327		0.10491		0.83256		0.52046		19		B		usable mapping rate	bgi	bgi	unknown	random_priming	unknown	bulk	unknown	unknown	China	2020-08-05	Undetermined	Embryo	Whole Organism	All anatomical structures
60447	60447	SRR12272864	SRX8777890	SRS7048442	SRP272672	PRJNA647444	mRNA and miRNA Seq in offspring post parental exposure to an antibiotic mixturemiRNA	PRJNA647444	Other	Zebrafish embryos were exposed to environmentally relevant levels 1 and 100 ug/L of antibiotic mixtures 15 of the most commonly detected antibiotics for 150 days until sexual maturation. miRNA mRNA network analysis in offspring post parental exposure to an antibiotic mixture.	C1	C1 C1 2 4	replicate:biological replicate 2\|strain:AB\|isolate:C1\|breed:not applicable\|cultivar:not applicable\|ecotype:not applicable\|age:not applicable\|dev stage:not applicable\|sex:pooled male and female\|tissue:the whole\|collection date:2019 11 01\|geo loc name:China: Shenzhen Guangdong\|phenotype:1ug/L\|BioSampleModel:Model organism or animal	RNA seq of zebrafish	C1C120200712	C1C120200712	RNA seq of zebrafish in different conditions	miRNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	SINGLE	BGISEQ	BGISEQ-500		SRP272672	loader:fastq load.py	C1_C1_2_4.fq	fastq	570918284.0	22577002.0	C1 C1 2 4.fq.gz	0:25.29	A:100121235;C:130480588;G:178656113;T:161652765;N:7583	25		100121235	130480588	178656113	161652765	7583	SRX8777890	SRS7048442	SRA1101037	Southern University of Science and Technology\|School of Environmental Science and Engineering	Southern University of Science and Technology	1	0.85096		0.12542		0.82873		0.51535		22		B		usable mapping rate	bgi	bgi	unknown	random_priming	unknown	bulk	unknown	unknown	China	2020-08-05	Undetermined	Embryo	Whole Organism	All anatomical structures
60448	60448	SRR12272865	SRX8777889	SRS7048441	SRP272672	PRJNA647444	mRNA and miRNA Seq in offspring post parental exposure to an antibiotic mixturemiRNA	PRJNA647444	Other	Zebrafish embryos were exposed to environmentally relevant levels 1 and 100 ug/L of antibiotic mixtures 15 of the most commonly detected antibiotics for 150 days until sexual maturation. miRNA mRNA network analysis in offspring post parental exposure to an antibiotic mixture.	C1	C1 C1 1 4	replicate:biological replicate 1\|strain:AB\|isolate:C1\|breed:not applicable\|cultivar:not applicable\|ecotype:not applicable\|age:not applicable\|dev stage:not applicable\|sex:pooled male and female\|tissue:the whole\|collection date:2019 11 01\|geo loc name:China: Shenzhen Guangdong\|phenotype:1ug/L\|BioSampleModel:Model organism or animal	RNA seq of zebrafish	C1C120200711	C1C120200711	RNA seq of zebrafish in different conditions	miRNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	SINGLE	BGISEQ	BGISEQ-500		SRP272672	loader:fastq load.py	C1_C1_1_4.fq	fastq	545089417.0	22812164.0	C1 C1 1 4.fq.gz	0:23.89	A:99851844;C:125314095;G:166401335;T:153521167;N:976	23		99851844	125314095	166401335	153521167	976	SRX8777889	SRS7048441	SRA1101037	Southern University of Science and Technology\|School of Environmental Science and Engineering	Southern University of Science and Technology	1	0.84602		0.11725		0.83159		0.51353		19		B		usable mapping rate	bgi	bgi	unknown	random_priming	unknown	bulk	unknown	unknown	China	2020-08-05	Undetermined	Embryo	Whole Organism	All anatomical structures
60449	60449	SRR12272866	SRX8777888	SRS7048440	SRP272672	PRJNA647444	mRNA and miRNA Seq in offspring post parental exposure to an antibiotic mixturemiRNA	PRJNA647444	Other	Zebrafish embryos were exposed to environmentally relevant levels 1 and 100 ug/L of antibiotic mixtures 15 of the most commonly detected antibiotics for 150 days until sexual maturation. miRNA mRNA network analysis in offspring post parental exposure to an antibiotic mixture.	C0	C0 C0 2 4	replicate:biological replicate 2\|strain:AB\|isolate:C0\|breed:not applicable\|cultivar:not applicable\|ecotype:not applicable\|age:not applicable\|dev stage:not applicable\|sex:pooled male and female\|tissue:the whole\|collection date:2019 11 01\|geo loc name:China: Shenzhen Guangdong\|phenotype:0ug/L\|BioSampleModel:Model organism or animal	RNA seq of zebrafish	C0C020200712	C0C020200712	RNA seq of zebrafish in different conditions	miRNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	SINGLE	BGISEQ	BGISEQ-500		SRP272672	loader:fastq load.py	C0_C0_2_4.fq	fastq	527443144.0	23174740.0	C0 C0 2 4.fq.gz	0:22.76	A:102368401;C:120843229;G:151690193;T:152540806;N:515	22		102368401	120843229	151690193	152540806	515	SRX8777888	SRS7048440	SRA1101037	Southern University of Science and Technology\|School of Environmental Science and Engineering	Southern University of Science and Technology	1	0.83063		0.08114		0.85169		0.50894		16		B		usable mapping rate	bgi	bgi	unknown	random_priming	unknown	bulk	unknown	unknown	China	2020-08-05	Undetermined	Embryo	Whole Organism	All anatomical structures
60450	60450	SRR12272867	SRX8777887	SRS7048439	SRP272672	PRJNA647444	mRNA and miRNA Seq in offspring post parental exposure to an antibiotic mixturemiRNA	PRJNA647444	Other	Zebrafish embryos were exposed to environmentally relevant levels 1 and 100 ug/L of antibiotic mixtures 15 of the most commonly detected antibiotics for 150 days until sexual maturation. miRNA mRNA network analysis in offspring post parental exposure to an antibiotic mixture.	C0	C0 C0 1 4	replicate:biological replicate 1\|strain:AB\|isolate:C0\|breed:not applicable\|cultivar:not applicable\|ecotype:not applicable\|age:not applicable\|dev stage:not applicable\|sex:pooled male and female\|tissue:the whole\|collection date:2019 11 01\|geo loc name:China: Shenzhen Guangdong\|phenotype:0ug/L\|BioSampleModel:Model organism or animal	RNA seq of zebrafish	C0C020200711	C0C020200711	RNA seq of zebrafish in different conditions	miRNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	SINGLE	BGISEQ	BGISEQ-500		SRP272672	loader:fastq load.py	C0_C0_1_4.fq	fastq	511759408.0	22673361.0	C0 C0 1 4.fq.gz	0:22.57	A:100879182;C:120237907;G:142799495;T:147842595;N:229	22		100879182	120237907	142799495	147842595	229	SRX8777887	SRS7048439	SRA1101037	Southern University of Science and Technology\|School of Environmental Science and Engineering	Southern University of Science and Technology	1	0.83904		0.0823		0.84741		0.49929		22		B		usable mapping rate	bgi	bgi	unknown	random_priming	unknown	bulk	unknown	unknown	China	2020-08-05	Undetermined	Embryo	Whole Organism	All anatomical structures
60496	60496	SRR12328853	SRX8829078	SRS7048444	SRP273655	PRJNA648800	mRNA and miRNA Seq in offspring post parental exposure to an antibiotic mixturemRNA	PRJNA648800	Other	Zebrafish embryos were exposed to environmentally relevant levels 1 and 100 ug/L of antibiotic mixtures 15 of the most commonly detected antibiotics for 150 days until sexual maturation. miRNA mRNA network analysis in offspring post parental exposure to an antibiotic mixture.	C2	C2 C2 2 4	replicate:biological replicate 2\|strain:AB\|isolate:C2\|breed:not applicable\|cultivar:not applicable\|ecotype:not applicable\|age:not applicable\|dev stage:not applicable\|sex:pooled male and female\|tissue:the whole\|collection date:2019 11 01\|geo loc name:China: Shenzhen Guangdong\|phenotype:100ug/L\|BioSampleModel:Model organism or animal	RNA seq of zebrafish	C2C220200712	C2C220200712	RNA seq of zebrafish in different conditions	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	BGISEQ	BGISEQ-500		SRP273655		C2_C2_2_4_1.fq.gz C2_C2_2_4_2.fq.gz	fastq fastq	6974294600.0	69742946.0	C2 C2 2 4 1.fq.gz	0:100 1:100	A:2057162032;C:1418016219;G:1425580374;T:2073535975;N:0	100	100	2057162032	1418016219	1425580374	2073535975	0	SRX8829078	SRS7048444	SRA1103962	Southern University of Science and Technology\|School of Environmental Science and Engineering	Southern University of Science and Technology	1	0.93171		0.17455		0.71626		0.54961		100		B		usable mapping rate	bgi	bgi	unknown	random_priming	unknown	bulk	unknown	unknown	China	2020-07-27	Undetermined	Embryo	Whole Organism	All anatomical structures
60497	60497	SRR12328854	SRX8829077	SRS7048443	SRP273655	PRJNA648800	mRNA and miRNA Seq in offspring post parental exposure to an antibiotic mixturemRNA	PRJNA648800	Other	Zebrafish embryos were exposed to environmentally relevant levels 1 and 100 ug/L of antibiotic mixtures 15 of the most commonly detected antibiotics for 150 days until sexual maturation. miRNA mRNA network analysis in offspring post parental exposure to an antibiotic mixture.	C2	C2 C2 1 4	replicate:biological replicate 1\|strain:AB\|isolate:C2\|breed:not applicable\|cultivar:not applicable\|ecotype:not applicable\|age:not applicable\|dev stage:not applicable\|sex:pooled male and female\|tissue:the whole\|collection date:2019 11 01\|geo loc name:China: Shenzhen Guangdong\|phenotype:100ug/L\|BioSampleModel:Model organism or animal	RNA seq of zebrafish	C2C220200711	C2C220200711	RNA seq of zebrafish in different conditions	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	BGISEQ	BGISEQ-500		SRP273655		C2_C2_1_4_2.fq.gz C2_C2_1_4_1.fq.gz	fastq fastq	6942905200.0	69429052.0	C2 C2 1 4 1.fq.gz	0:100 1:100	A:2025129308;C:1433430820;G:1434784226;T:2049560846;N:0	100	100	2025129308	1433430820	1434784226	2049560846	0	SRX8829077	SRS7048443	SRA1103962	Southern University of Science and Technology\|School of Environmental Science and Engineering	Southern University of Science and Technology	1	0.93211		0.16662		0.71001		0.53674		100		B		usable mapping rate	bgi	bgi	unknown	random_priming	unknown	bulk	unknown	unknown	China	2020-07-27	Undetermined	Embryo	Whole Organism	All anatomical structures
60498	60498	SRR12328855	SRX8829076	SRS7048442	SRP273655	PRJNA648800	mRNA and miRNA Seq in offspring post parental exposure to an antibiotic mixturemRNA	PRJNA648800	Other	Zebrafish embryos were exposed to environmentally relevant levels 1 and 100 ug/L of antibiotic mixtures 15 of the most commonly detected antibiotics for 150 days until sexual maturation. miRNA mRNA network analysis in offspring post parental exposure to an antibiotic mixture.	C1	C1 C1 2 4	replicate:biological replicate 2\|strain:AB\|isolate:C1\|breed:not applicable\|cultivar:not applicable\|ecotype:not applicable\|age:not applicable\|dev stage:not applicable\|sex:pooled male and female\|tissue:the whole\|collection date:2019 11 01\|geo loc name:China: Shenzhen Guangdong\|phenotype:1ug/L\|BioSampleModel:Model organism or animal	RNA seq of zebrafish	C1C120200712	C1C120200712	RNA seq of zebrafish in different conditions	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	BGISEQ	BGISEQ-500		SRP273655		C1_C1_2_4_1.fq.gz C1_C1_2_4_2.fq.gz	fastq fastq	6973657600.0	69736576.0	C1 C1 2 4 1.fq.gz	0:100 1:100	A:2050440259;C:1423350359;G:1423015668;T:2076851314;N:0	100	100	2050440259	1423350359	1423015668	2076851314	0	SRX8829076	SRS7048442	SRA1103962	Southern University of Science and Technology\|School of Environmental Science and Engineering	Southern University of Science and Technology	1	0.92911		0.1877		0.72025		0.58085		100		B		usable mapping rate	bgi	bgi	unknown	random_priming	unknown	bulk	unknown	unknown	China	2020-07-27	Undetermined	Embryo	Whole Organism	All anatomical structures
60499	60499	SRR12328856	SRX8829075	SRS7048441	SRP273655	PRJNA648800	mRNA and miRNA Seq in offspring post parental exposure to an antibiotic mixturemRNA	PRJNA648800	Other	Zebrafish embryos were exposed to environmentally relevant levels 1 and 100 ug/L of antibiotic mixtures 15 of the most commonly detected antibiotics for 150 days until sexual maturation. miRNA mRNA network analysis in offspring post parental exposure to an antibiotic mixture.	C1	C1 C1 1 4	replicate:biological replicate 1\|strain:AB\|isolate:C1\|breed:not applicable\|cultivar:not applicable\|ecotype:not applicable\|age:not applicable\|dev stage:not applicable\|sex:pooled male and female\|tissue:the whole\|collection date:2019 11 01\|geo loc name:China: Shenzhen Guangdong\|phenotype:1ug/L\|BioSampleModel:Model organism or animal	RNA seq of zebrafish	C1C120200711	C1C120200711	RNA seq of zebrafish in different conditions	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	BGISEQ	BGISEQ-500		SRP273655		C1_C1_1_4_1.fq.gz C1_C1_1_4_2.fq.gz	fastq fastq	6746729200.0	67467292.0	C1 C1 1 4 1.fq.gz	0:100 1:100	A:2004203843;C:1356765594;G:1357760526;T:2027999237;N:0	100	100	2004203843	1356765594	1357760526	2027999237	0	SRX8829075	SRS7048441	SRA1103962	Southern University of Science and Technology\|School of Environmental Science and Engineering	Southern University of Science and Technology	1	0.92733		0.19903		0.72228		0.59259		100		B		usable mapping rate	bgi	bgi	unknown	random_priming	unknown	bulk	unknown	unknown	China	2020-07-27	Undetermined	Embryo	Whole Organism	All anatomical structures
60500	60500	SRR12328857	SRX8829074	SRS7048440	SRP273655	PRJNA648800	mRNA and miRNA Seq in offspring post parental exposure to an antibiotic mixturemRNA	PRJNA648800	Other	Zebrafish embryos were exposed to environmentally relevant levels 1 and 100 ug/L of antibiotic mixtures 15 of the most commonly detected antibiotics for 150 days until sexual maturation. miRNA mRNA network analysis in offspring post parental exposure to an antibiotic mixture.	C0	C0 C0 2 4	replicate:biological replicate 2\|strain:AB\|isolate:C0\|breed:not applicable\|cultivar:not applicable\|ecotype:not applicable\|age:not applicable\|dev stage:not applicable\|sex:pooled male and female\|tissue:the whole\|collection date:2019 11 01\|geo loc name:China: Shenzhen Guangdong\|phenotype:0ug/L\|BioSampleModel:Model organism or animal	RNA seq of zebrafish	C0C020200712	C0C020200712	RNA seq of zebrafish in different conditions	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	BGISEQ	BGISEQ-500		SRP273655		C0_C0_2_4_1.fq.gz C0_C0_2_4_2.fq.gz	fastq fastq	6924724800.0	69247248.0	C0 C0 2 4 1.fq.gz	0:100 1:100	A:1974618038;C:1471821932;G:1482725702;T:1995559128;N:0	100	100	1974618038	1471821932	1482725702	1995559128	0	SRX8829074	SRS7048440	SRA1103962	Southern University of Science and Technology\|School of Environmental Science and Engineering	Southern University of Science and Technology	1	0.93473		0.14676		0.69649		0.50413		100		B		usable mapping rate	bgi	bgi	unknown	random_priming	unknown	bulk	unknown	unknown	China	2020-07-27	Undetermined	Embryo	Whole Organism	All anatomical structures
60501	60501	SRR12328858	SRX8829073	SRS7048439	SRP273655	PRJNA648800	mRNA and miRNA Seq in offspring post parental exposure to an antibiotic mixturemRNA	PRJNA648800	Other	Zebrafish embryos were exposed to environmentally relevant levels 1 and 100 ug/L of antibiotic mixtures 15 of the most commonly detected antibiotics for 150 days until sexual maturation. miRNA mRNA network analysis in offspring post parental exposure to an antibiotic mixture.	C0	C0 C0 1 4	replicate:biological replicate 1\|strain:AB\|isolate:C0\|breed:not applicable\|cultivar:not applicable\|ecotype:not applicable\|age:not applicable\|dev stage:not applicable\|sex:pooled male and female\|tissue:the whole\|collection date:2019 11 01\|geo loc name:China: Shenzhen Guangdong\|phenotype:0ug/L\|BioSampleModel:Model organism or animal	RNA seq of zebrafish	C0C020200711	C0C020200711	RNA seq of zebrafish in different conditions	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	BGISEQ	BGISEQ-500		SRP273655		C0_C0_1_4_1.fq.gz C0_C0_1_4_2.fq.gz	fastq fastq	6899505600.0	68995056.0	C0 C0 1 4 1.fq.gz	0:100 1:100	A:1957459931;C:1477351919;G:1482435319;T:1982258431;N:0	100	100	1957459931	1477351919	1482435319	1982258431	0	SRX8829073	SRS7048439	SRA1103962	Southern University of Science and Technology\|School of Environmental Science and Engineering	Southern University of Science and Technology	1	0.93567		0.14057		0.6883		0.48707		100		B		usable mapping rate	bgi	bgi	unknown	random_priming	unknown	bulk	unknown	unknown	China	2020-07-27	Undetermined	Embryo	Whole Organism	All anatomical structures
60550	60550	SRR12342828	SRX8842536	SRS7105601	SRP274071	PRJNA649399	zebrafish 5 dpf sequencing	PRJNA649399	Other	For a more comprehensive analysis for the role of oxr1a on zebrafish for protection against oxidative stress		WT CTRL	strain:no\|isolate:without\|breed:AB line\|cultivar:1\|ecotype:2\|age:5 dpf\|dev stage:larval\|sex:male\|tissue:whole fish\|BioSampleModel:Model organism or animal	whole fish	729729	729729	AB line gene knockout	WGS	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina HiSeq 2000		SRP274071		WT_ctrl1 WT_ctrl2	fastq fastq	2795932250.0	11183729.0	WT ctrl1.gz	0:125 1:125	A:714170507;C:687382036;G:684930011;T:709446720;N:2976	125	125	714170507	687382036	684930011	709446720	2976	SRX8842536	SRS7105601	SRA1105186	Southwest University\|College of Animal Science and Technolgoy	Southwest University	2	0.96284	0.9622	0.06398	0.06785	0.70276	0.70179	0.50363	0.50583	125	125	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2020-07-29	Larval	Larval	Whole Organism	All anatomical structures
62699	62699	SRR13320609	SRX9748089	SRS7936232	SRP299308	PRJNA688414	WT and oxr1b mutant zebrafish sequencing	PRJNA688414	Other	To clarify the role of oxr1b in regulating genome wide gene expression during early oxidative stress response the comparative transcriptome analysis of WT and oxr1b / mutant zebrafish larvae were performed by RNA seq.	danio rerio	zebrafish larval	strain:AB line\|isolate:n1\|breed:wt type and mutant\|cultivar:no\|ecotype:Chongqing\|age:5 dpf\|dev stage:larval stage\|sex:not collected\|tissue:whole fish\|BioSampleModel:Model organism or animal	Transcriptome Analysis the Early Molecular Response of Oxr1b / Mutant Zebrafish Larvae to Oxidative Stress by RNA Seq	MJ20201107019	MJ20201107019	The total RNA samples were isolated from WT and oxr1b / mutant zebrafish larvae by the RNAiso Plus kit	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina NovaSeq 6000		SRP299308		WT_H2O2.R1.fastq.gz WT_H2O2.R2.fastq.gz WT_ctrl.R1.fastq.gz WT_ctrl.R2.fastq.gz moxr1b_H2O2.R1.fastq.gz moxr1b_H2O2.R2.fastq.gz moxr1b_ctrl.R1.fastq.gz moxr1b_ctrl.R2.fastq.gz	fastq fastq fastq fastq fastq fastq fastq fastq	30986524572.0	102604386.0	WT H2O2.R1.fastq.gz	0:151 1:151	A:8204027517;C:7238523175;G:7419111448;T:8124456513;N:405919	151	151	8204027517	7238523175	7419111448	8124456513	405919	SRX9748089	SRS7936232	SRA1178651	Southwest University\|College of Fisheries	Southwest University	2	0.94082	0.91236	0.08994	0.08673	0.65997	0.66478	0.48105	0.48139	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2020-12-29	Larval	Larval	Whole Organism	All anatomical structures
64161	64161	SRR14308450	SRX10663886	SRS8758306	SRP315996	PRJNA724011	BDE 47 zebrafish 24hpf 4dpf	PRJNA724011	Other			D1	strain:AB10\|age:24hpf10\|dev stage:24hpf10\|sex:pooled male and female\|tissue:wholefish\|BioSampleModel:Model organism or animal	AB10	L10	L10	paried end seq	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina MiSeq		SRP315996		D1.raw_1.fastq.gz D1.raw_2.fastq.gz	fastq fastq	6493890000.0	21646300.0	D1.raw 1.fastq.gz	0:150 1:150	A:1744755708;C:1484305355;G:1549325281;T:1715269253;N:234403	150	150	1744755708	1484305355	1549325281	1715269253	234403	SRX10663886	SRS8758306	SRA1222808	Shantou University\|Medical Colleg	Shantou University	2	0.94046	0.93893	0.09092	0.08953	0.69179	0.6957	0.47163	0.4711	150	150	B	B	biological fallback assumption	illumina	miseq	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-04-27	Pharyngula	Embryo	Whole Organism	All anatomical structures
64163	64163	SRR14308452	SRX10663884	SRS8758304	SRP315996	PRJNA724011	BDE 47 zebrafish 24hpf 4dpf	PRJNA724011	Other			C2	strain:AB8\|age:24hpf8\|dev stage:24hpf8\|sex:pooled male and female\|tissue:wholefish\|BioSampleModel:Model organism or animal	AB8	L8	L8	paried end seq	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina MiSeq		SRP315996		C2.raw_1.fastq.gz C2.raw_2.fastq.gz	fastq fastq	5887783500.0	19625945.0	C2.raw 1.fastq.gz	0:150 1:150	A:1539979565;C:1392825547;G:1451253488;T:1503541801;N:183099	150	150	1539979565	1392825547	1451253488	1503541801	183099	SRX10663884	SRS8758304	SRA1222808	Shantou University\|Medical Colleg	Shantou University	2	0.94543	0.94466	0.06666	0.06614	0.73342	0.73468	0.46413	0.46432	150	150	B	B	biological fallback assumption	illumina	miseq	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-04-27	Pharyngula	Embryo	Whole Organism	All anatomical structures
64164	64164	SRR14308453	SRX10663883	SRS8758303	SRP315996	PRJNA724011	BDE 47 zebrafish 24hpf 4dpf	PRJNA724011	Other			C1	strain:AB7\|age:24hpf7\|dev stage:24hpf7\|sex:pooled male and female\|tissue:wholefish\|BioSampleModel:Model organism or animal	AB7	L7	L7	paried end seq	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina MiSeq		SRP315996		C1.raw_1.fastq.gz C1.raw_2.fastq.gz	fastq fastq	5878215900.0	19594053.0	C1.raw 1.fastq.gz	0:150 1:150	A:1567876584;C:1356626287;G:1407943115;T:1545550803;N:219111	150	150	1567876584	1356626287	1407943115	1545550803	219111	SRX10663883	SRS8758303	SRA1222808	Shantou University\|Medical Colleg	Shantou University	2	0.93508	0.93337	0.08056	0.08002	0.74024	0.74276	0.47159	0.47142	150	150	B	B	biological fallback assumption	illumina	miseq	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-04-27	Pharyngula	Embryo	Whole Organism	All anatomical structures
64165	64165	SRR14308454	SRX10663882	SRS8758302	SRP315996	PRJNA724011	BDE 47 zebrafish 24hpf 4dpf	PRJNA724011	Other			B3	strain:AB6\|age:24hpf6\|dev stage:24hpf6\|sex:pooled male and female\|tissue:wholefish\|BioSampleModel:Model organism or animal	AB6	L6	L6	paried end seq	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina MiSeq		SRP315996		B3.raw_1.fastq.gz B3.raw_2.fastq.gz	fastq fastq	5684530200.0	18948434.0	B3.raw 1.fastq.gz	0:150 1:150	A:1468959527;C:1362254368;G:1409533547;T:1443570573;N:212185	150	150	1468959527	1362254368	1409533547	1443570573	212185	SRX10663882	SRS8758302	SRA1222808	Shantou University\|Medical Colleg	Shantou University	2	0.74739	0.74464	0.07384	0.07335	0.72671	0.72977	0.46742	0.47358	150	150	B	B	biological fallback assumption	illumina	miseq	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-04-27	Pharyngula	Embryo	Whole Organism	All anatomical structures
64166	64166	SRR14308455	SRX10663881	SRS8758301	SRP315996	PRJNA724011	BDE 47 zebrafish 24hpf 4dpf	PRJNA724011	Other			B2	strain:AB5\|age:24hpf5\|dev stage:24hpf5\|sex:pooled male and female\|tissue:wholefish\|BioSampleModel:Model organism or animal	AB5	L5	L5	paried end seq	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina MiSeq		SRP315996		B2.raw_1.fastq.gz B2.raw_2.fastq.gz	fastq fastq	6605542500.0	22018475.0	B2.raw 1.fastq.gz	0:150 1:150	A:1776549620;C:1511937358;G:1570716255;T:1746097273;N:241994	150	150	1776549620	1511937358	1570716255	1746097273	241994	SRX10663881	SRS8758301	SRA1222808	Shantou University\|Medical Colleg	Shantou University	2	0.94479	0.94309	0.09199	0.09117	0.7024	0.70445	0.46871	0.46925	150	150	B	B	biological fallback assumption	illumina	miseq	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-04-27	Pharyngula	Embryo	Whole Organism	All anatomical structures
64167	64167	SRR14308456	SRX10663880	SRS8758300	SRP315996	PRJNA724011	BDE 47 zebrafish 24hpf 4dpf	PRJNA724011	Other			B1	strain:AB4\|age:24hpf4\|dev stage:24hpf4\|sex:pooled male and female\|tissue:wholefish\|BioSampleModel:Model organism or animal	AB4	L4	L4	paried end seq	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina MiSeq		SRP315996		B1.raw_1.fastq.gz B1.raw_2.fastq.gz	fastq fastq	5853655500.0	19512185.0	B1.raw 1.fastq.gz	0:150 1:150	A:1571488140;C:1342134462;G:1393752149;T:1546065949;N:214800	150	150	1571488140	1342134462	1393752149	1546065949	214800	SRX10663880	SRS8758300	SRA1222808	Shantou University\|Medical Colleg	Shantou University	2	0.94318	0.94153	0.08642	0.08621	0.7024	0.70508	0.46359	0.46397	150	150	B	B	biological fallback assumption	illumina	miseq	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-04-27	Pharyngula	Embryo	Whole Organism	All anatomical structures
64168	64168	SRR14308457	SRX10663879	SRS8758299	SRP315996	PRJNA724011	BDE 47 zebrafish 24hpf 4dpf	PRJNA724011	Other			DD3	strain:AB24\|age:24hpf21\|dev stage:24hpf21\|sex:pooled male and female\|tissue:wholefish\|BioSampleModel:Model organism or animal	AB24	L24	L24	paried end seq	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina MiSeq		SRP315996		DD3.raw_1.fastq.gz DD3.raw_2.fastq.gz	fastq fastq	7608806100.0	25362687.0	DD3.raw 1.fastq.gz	0:150 1:150	A:2042994601;C:1734375022;G:1812166219;T:2018988826;N:281432	150	150	2042994601	1734375022	1812166219	2018988826	281432	SRX10663879	SRS8758299	SRA1222808	Shantou University\|Medical Colleg	Shantou University	2	0.94225	0.94109	0.10828	0.10717	0.67436	0.6776	0.47781	0.48362	150	150	B	B	biological fallback assumption	illumina	miseq	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-04-27	Pharyngula	Embryo	Whole Organism	All anatomical structures
64169	64169	SRR14308458	SRX10663878	SRS8758298	SRP315996	PRJNA724011	BDE 47 zebrafish 24hpf 4dpf	PRJNA724011	Other			DD2	strain:AB23\|age:24hpf21\|dev stage:24hpf21\|sex:pooled male and female\|tissue:wholefish\|BioSampleModel:Model organism or animal	AB23	L23	L23	paried end seq	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina MiSeq		SRP315996		DD2.raw_1.fastq.gz DD2.raw_2.fastq.gz	fastq fastq	8917386000.0	29724620.0	DD2.raw 1.fastq.gz	0:150 1:150	A:2348537193;C:2056372655;G:2265284593;T:2246861797;N:329762	150	150	2348537193	2056372655	2265284593	2246861797	329762	SRX10663878	SRS8758298	SRA1222808	Shantou University\|Medical Colleg	Shantou University	2	0.94502	0.94397	0.09162	0.09061	0.67444	0.67718	0.47862	0.47594	150	150	B	B	biological fallback assumption	illumina	miseq	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-04-27	Pharyngula	Embryo	Whole Organism	All anatomical structures
64170	64170	SRR14308459	SRX10663877	SRS8758297	SRP315996	PRJNA724011	BDE 47 zebrafish 24hpf 4dpf	PRJNA724011	Other			DD1	strain:AB22\|age:24hpf21\|dev stage:24hpf21\|sex:pooled male and female\|tissue:wholefish\|BioSampleModel:Model organism or animal	AB22	L22	L22	paried end seq	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina MiSeq		SRP315996		DD1.raw_1.fastq.gz DD1.raw_2.fastq.gz	fastq fastq	9206423700.0	30688079.0	DD1.raw 1.fastq.gz	0:150 1:150	A:2472225392;C:2105587795;G:2227426250;T:2400846522;N:337741	150	150	2472225392	2105587795	2227426250	2400846522	337741	SRX10663877	SRS8758297	SRA1222808	Shantou University\|Medical Colleg	Shantou University	2	0.94554	0.94388	0.09791	0.09713	0.67176	0.67608	0.47029	0.46751	150	150	B	B	biological fallback assumption	illumina	miseq	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-04-26	Pharyngula	Embryo	Whole Organism	All anatomical structures
64171	64171	SRR14308460	SRX10663876	SRS8758296	SRP315996	PRJNA724011	BDE 47 zebrafish 24hpf 4dpf	PRJNA724011	Other			CC3	strain:AB21\|age:24hpf21\|dev stage:24hpf21\|sex:pooled male and female\|tissue:wholefish\|BioSampleModel:Model organism or animal	AB21	L21	L21	paried end seq	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina MiSeq		SRP315996		CC3.raw_1.fastq.gz CC3.raw_2.fastq.gz	fastq fastq	7960518600.0	26535062.0	CC3.raw 1.fastq.gz	0:150 1:150	A:2140265475;C:1813420444;G:1929113445;T:2077420579;N:298657	150	150	2140265475	1813420444	1929113445	2077420579	298657	SRX10663876	SRS8758296	SRA1222808	Shantou University\|Medical Colleg	Shantou University	2	0.94251	0.94195	0.10311	0.10286	0.66703	0.66916	0.47505	0.4745	150	150	B	B	biological fallback assumption	illumina	miseq	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-04-27	Pharyngula	Embryo	Whole Organism	All anatomical structures
64172	64172	SRR14308461	SRX10663875	SRS8758295	SRP315996	PRJNA724011	BDE 47 zebrafish 24hpf 4dpf	PRJNA724011	Other			A3	strain:AB3\|age:24hpf3\|dev stage:24hpf3\|sex:pooled male and female\|tissue:wholefish\|BioSampleModel:Model organism or animal	AB3	L3	L3	paried end seq	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina MiSeq		SRP315996		A3.raw_1.fastq.gz A3.raw_2.fastq.gz	fastq fastq	6501644400.0	21672148.0	A3.raw 1.fastq.gz	0:150 1:150	A:1749736007;C:1484391807;G:1544667394;T:1722602072;N:247120	150	150	1749736007	1484391807	1544667394	1722602072	247120	SRX10663875	SRS8758295	SRA1222808	Shantou University\|Medical Colleg	Shantou University	2	0.93166	0.92874	0.09361	0.09274	0.69033	0.69382	0.4671	0.47232	150	150	B	B	biological fallback assumption	illumina	miseq	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-04-27	Pharyngula	Embryo	Whole Organism	All anatomical structures
64173	64173	SRR14308462	SRX10663874	SRS8758294	SRP315996	PRJNA724011	BDE 47 zebrafish 24hpf 4dpf	PRJNA724011	Other			CC2	strain:AB20\|age:24hpf20\|dev stage:24hpf20\|sex:pooled male and female\|tissue:wholefish\|BioSampleModel:Model organism or animal	AB20	L20	L20	paried end seq	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina MiSeq		SRP315996		CC2.raw_1.fastq.gz CC2.raw_2.fastq.gz	fastq fastq	6983705700.0	23279019.0	CC2.raw 1.fastq.gz	0:150 1:150	A:1893999424;C:1578088530;G:1645506692;T:1865862107;N:248947	150	150	1893999424	1578088530	1645506692	1865862107	248947	SRX10663874	SRS8758294	SRA1222808	Shantou University\|Medical Colleg	Shantou University	2	0.94027	0.93898	0.11339	0.11255	0.66687	0.67044	0.47404	0.47154	150	150	B	B	biological fallback assumption	illumina	miseq	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-04-27	Pharyngula	Embryo	Whole Organism	All anatomical structures
64174	64174	SRR14308463	SRX10663873	SRS8758293	SRP315996	PRJNA724011	BDE 47 zebrafish 24hpf 4dpf	PRJNA724011	Other			CC1	strain:AB19\|age:24hpf19\|dev stage:24hpf19\|sex:pooled male and female\|tissue:wholefish\|BioSampleModel:Model organism or animal	AB19	L19	L19	paried end seq	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina MiSeq		SRP315996		CC1.raw_1.fastq.gz CC1.raw_2.fastq.gz	fastq fastq	6085625100.0	20285417.0	CC1.raw 1.fastq.gz	0:150 1:150	A:1649108440;C:1377973381;G:1437131820;T:1621215684;N:195775	150	150	1649108440	1377973381	1437131820	1621215684	195775	SRX10663873	SRS8758293	SRA1222808	Shantou University\|Medical Colleg	Shantou University	2	0.93918	0.93804	0.11318	0.11256	0.66754	0.67006	0.4771	0.47662	150	150	B	B	biological fallback assumption	illumina	miseq	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-04-27	Pharyngula	Embryo	Whole Organism	All anatomical structures
64175	64175	SRR14308464	SRX10663872	SRS8758292	SRP315996	PRJNA724011	BDE 47 zebrafish 24hpf 4dpf	PRJNA724011	Other			BB3	strain:AB18\|age:24hpf18\|dev stage:24hpf18\|sex:pooled male and female\|tissue:wholefish\|BioSampleModel:Model organism or animal	AB18	L18	L18	paried end seq	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina MiSeq		SRP315996		BB3.raw_1.fastq.gz BB3.raw_2.fastq.gz	fastq fastq	7062474600.0	23541582.0	BB3.raw 1.fastq.gz	0:150 1:150	A:1921863301;C:1592284161;G:1655846305;T:1892221736;N:259097	150	150	1921863301	1592284161	1655846305	1892221736	259097	SRX10663872	SRS8758292	SRA1222808	Shantou University\|Medical Colleg	Shantou University	2	0.93889	0.93837	0.11056	0.10986	0.66614	0.66933	0.47318	0.47131	150	150	B	B	biological fallback assumption	illumina	miseq	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-04-27	Pharyngula	Embryo	Whole Organism	All anatomical structures
64176	64176	SRR14308465	SRX10663871	SRS8758291	SRP315996	PRJNA724011	BDE 47 zebrafish 24hpf 4dpf	PRJNA724011	Other			BB2	strain:AB17\|age:24hpf17\|dev stage:24hpf17\|sex:pooled male and female\|tissue:wholefish\|BioSampleModel:Model organism or animal	AB17	L17	L17	paried end seq	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina MiSeq		SRP315996		BB2.raw_1.fastq.gz BB2.raw_2.fastq.gz	fastq fastq	8811666300.0	29372221.0	BB2.raw 1.fastq.gz	0:150 1:150	A:2397552932;C:1984902811;G:2068491247;T:2360394673;N:324637	150	150	2397552932	1984902811	2068491247	2360394673	324637	SRX10663871	SRS8758291	SRA1222808	Shantou University\|Medical Colleg	Shantou University	2	0.94173	0.9408	0.11119	0.11014	0.66862	0.67361	0.47037	0.47102	150	150	B	B	biological fallback assumption	illumina	miseq	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-04-27	Pharyngula	Embryo	Whole Organism	All anatomical structures
64177	64177	SRR14308466	SRX10663870	SRS8758290	SRP315996	PRJNA724011	BDE 47 zebrafish 24hpf 4dpf	PRJNA724011	Other			BB1	strain:AB16\|age:24hpf16\|dev stage:24hpf16\|sex:pooled male and female\|tissue:wholefish\|BioSampleModel:Model organism or animal	AB16	L16	L16	paried end seq	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina MiSeq		SRP315996		BB1.raw_1.fastq.gz BB1.raw_2.fastq.gz	fastq fastq	7443202800.0	24810676.0	BB1.raw 1.fastq.gz	0:150 1:150	A:2006371139;C:1694257851;G:1793398929;T:1948895527;N:279354	150	150	2006371139	1694257851	1793398929	1948895527	279354	SRX10663870	SRS8758290	SRA1222808	Shantou University\|Medical Colleg	Shantou University	2	0.94595	0.94447	0.09854	0.09761	0.66947	0.67308	0.47022	0.46692	150	150	B	B	biological fallback assumption	illumina	miseq	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-04-27	Pharyngula	Embryo	Whole Organism	All anatomical structures
64178	64178	SRR14308467	SRX10663869	SRS8758289	SRP315996	PRJNA724011	BDE 47 zebrafish 24hpf 4dpf	PRJNA724011	Other			AA3	strain:AB15\|age:24hpf15\|dev stage:24hpf15\|sex:pooled male and female\|tissue:wholefish\|BioSampleModel:Model organism or animal	AB15	L15	L15	paried end seq	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina MiSeq		SRP315996		AA3.raw_2.fastq.gz AA3.raw_1.fastq.gz	fastq fastq	9615009600.0	32050032.0	AA3.raw 1.fastq.gz	0:150 1:150	A:2582591269;C:2196606474;G:2311586967;T:2523869435;N:355455	150	150	2582591269	2196606474	2311586967	2523869435	355455	SRX10663869	SRS8758289	SRA1222808	Shantou University\|Medical Colleg	Shantou University	2	0.94626	0.94544	0.10279	0.10177	0.6607	0.66409	0.47416	0.46877	150	150	B	B	biological fallback assumption	illumina	miseq	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-04-26	Pharyngula	Embryo	Whole Organism	All anatomical structures
64179	64179	SRR14308468	SRX10663868	SRS8758288	SRP315996	PRJNA724011	BDE 47 zebrafish 24hpf 4dpf	PRJNA724011	Other			AA2	strain:AB14\|age:24hpf14\|dev stage:24hpf14\|sex:pooled male and female\|tissue:wholefish\|BioSampleModel:Model organism or animal	AB14	L14	L14	paried end seq	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina MiSeq		SRP315996		AA2.raw_1.fastq.gz AA2.raw_2.fastq.gz	fastq fastq	9362109300.0	31207031.0	AA2.raw 1.fastq.gz	0:150 1:150	A:2520201597;C:2134760126;G:2243935064;T:2462866543;N:345970	150	150	2520201597	2134760126	2243935064	2462866543	345970	SRX10663868	SRS8758288	SRA1222808	Shantou University\|Medical Colleg	Shantou University	2	0.94556	0.94456	0.10681	0.10604	0.66235	0.6647	0.4763	0.47399	150	150	B	B	biological fallback assumption	illumina	miseq	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-04-26	Pharyngula	Embryo	Whole Organism	All anatomical structures
64180	64180	SRR14308469	SRX10663867	SRS8758287	SRP315996	PRJNA724011	BDE 47 zebrafish 24hpf 4dpf	PRJNA724011	Other			AA1	strain:AB13\|age:24hpf13\|dev stage:24hpf13\|sex:pooled male and female\|tissue:wholefish\|BioSampleModel:Model organism or animal	AB13	L13	L13	paried end seq	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina MiSeq		SRP315996		AA1.raw_1.fastq.gz AA1.raw_2.fastq.gz	fastq fastq	7908833100.0	26362777.0	AA1.raw 1.fastq.gz	0:150 1:150	A:2160066191;C:1780834262;G:1851117381;T:2116551054;N:264212	150	150	2160066191	1780834262	1851117381	2116551054	264212	SRX10663867	SRS8758287	SRA1222808	Shantou University\|Medical Colleg	Shantou University	2	0.9396	0.93706	0.12075	0.11997	0.6619	0.66429	0.46569	0.46809	150	150	B	B	biological fallback assumption	illumina	miseq	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-04-27	Pharyngula	Embryo	Whole Organism	All anatomical structures
64181	64181	SRR14308470	SRX10663866	SRS8758286	SRP315996	PRJNA724011	BDE 47 zebrafish 24hpf 4dpf	PRJNA724011	Other			D3	strain:AB12\|age:24hpf12\|dev stage:24hpf12\|sex:pooled male and female\|tissue:wholefish\|BioSampleModel:Model organism or animal	AB12	L12	L12	paried end seq	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina MiSeq		SRP315996		D3.raw_1.fastq.gz D3.raw_2.fastq.gz	fastq fastq	6923319900.0	23077733.0	D3.raw 1.fastq.gz	0:150 1:150	A:1863150654;C:1581723494;G:1644468748;T:1833723008;N:253996	150	150	1863150654	1581723494	1644468748	1833723008	253996	SRX10663866	SRS8758286	SRA1222808	Shantou University\|Medical Colleg	Shantou University	2	0.94206	0.94012	0.09084	0.08963	0.69158	0.69587	0.46957	0.46928	150	150	B	B	biological fallback assumption	illumina	miseq	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-04-27	Pharyngula	Embryo	Whole Organism	All anatomical structures
64182	64182	SRR14308471	SRX10663865	SRS8758285	SRP315996	PRJNA724011	BDE 47 zebrafish 24hpf 4dpf	PRJNA724011	Other			D2	strain:AB11\|age:24hpf11\|dev stage:24hpf11\|sex:pooled male and female\|tissue:wholefish\|BioSampleModel:Model organism or animal	AB11	L11	L11	paried end seq	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina MiSeq		SRP315996		D2.raw_1.fastq.gz D2.raw_2.fastq.gz	fastq fastq	5966531700.0	19888439.0	D2.raw 1.fastq.gz	0:150 1:150	A:1618527031;C:1354948721;G:1407570126;T:1585294636;N:191186	150	150	1618527031	1354948721	1407570126	1585294636	191186	SRX10663865	SRS8758285	SRA1222808	Shantou University\|Medical Colleg	Shantou University	2	0.93817	0.93656	0.09919	0.09832	0.69633	0.69873	0.46752	0.46677	150	150	B	B	biological fallback assumption	illumina	miseq	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-04-27	Pharyngula	Embryo	Whole Organism	All anatomical structures
64183	64183	SRR14308472	SRX10663864	SRS8758284	SRP315996	PRJNA724011	BDE 47 zebrafish 24hpf 4dpf	PRJNA724011	Other			A2	strain:AB2\|age:24hpf2\|dev stage:24hpf2\|sex:pooled male and female\|tissue:wholefish\|BioSampleModel:Model organism or animal	AB2	L2	L2	paried end seq	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina MiSeq		SRP315996		A2.raw_1.fastq.gz A2.raw_2.fastq.gz	fastq fastq	6898409700.0	22994699.0	A2.raw 1.fastq.gz	0:150 1:150	A:1853201809;C:1578196914;G:1644192208;T:1822563946;N:254823	150	150	1853201809	1578196914	1644192208	1822563946	254823	SRX10663864	SRS8758284	SRA1222808	Shantou University\|Medical Colleg	Shantou University	2	0.92689	0.92559	0.09274	0.092	0.69449	0.698	0.47398	0.47458	150	150	B	B	biological fallback assumption	illumina	miseq	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-04-27	Pharyngula	Embryo	Whole Organism	All anatomical structures
64184	64184	SRR14308473	SRX10663863	SRS8758283	SRP315996	PRJNA724011	BDE 47 zebrafish 24hpf 4dpf	PRJNA724011	Other			A1	strain:AB1\|age:24hpf1\|dev stage:24hpf1\|sex:pooled male and female\|tissue:wholefish\|BioSampleModel:Model organism or animal	AB1	L1	L1	paried end seq	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina MiSeq		SRP315996		A1.raw_1.fastq.gz A1.raw_2.fastq.gz	fastq fastq	6969096000.0	23230320.0	A1.raw 1.fastq.gz	0:150 1:150	A:1873420822;C:1595222195;G:1663575945;T:1836625430;N:251608	150	150	1873420822	1595222195	1663575945	1836625430	251608	SRX10663863	SRS8758283	SRA1222808	Shantou University\|Medical Colleg	Shantou University	2	0.92862	0.92691	0.09367	0.09313	0.69203	0.69603	0.47678	0.47455	150	150	B	B	biological fallback assumption	illumina	miseq	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-04-27	Pharyngula	Embryo	Whole Organism	All anatomical structures

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;