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run_metadata

42 rows where experiment.library_selection = "RANDOM PCR", technology = "unknown" and tissue_curation = "Embryo Imprecise"

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experiment.platform 2

experiment.library_layout 2

tissue_curation_coarse 1

tissue_curation 1

  • Embryo Imprecise · 42 ✖

technology 1

  • unknown · 42 ✖

experiment.library_strategy 1

experiment.library_source 1

experiment.library_selection 1

  • RANDOM PCR · 42 ✖

devstage_curation_coarse 1

devstage_curation 1

Link rowid ▼ run.accession experiment.accession sample.accession study.accession bioproject study.title study.alias study.type study.abstract study.attributes study.PMIDs sample.description sample.title sample.alias sample.centername sample.attributes GEOsample.title GEOsample.dataprocessing GEOsample.source GEOsample.treatmentprotocol GEOsample.extractprotocol GEOsample.growthprotocol GEOsample.characteristics GEOsample.accession experiment.title experiment.alias experiment.library_name experiment.design_description experiment.library_construction_protocol experiment.attributes experiment.library_strategy experiment.library_source experiment.library_selection experiment.library_layout experiment.platform experiment.instrument_model experiment.spot_descriptor experiment.study_ref run.title run.attributes run.filename run.semantic_name run.total_bases run.total_spots run.alias run.read_lengths run.base_counts run.r1_length run.r2_length run.r3_length run.r4_length run.Acount run.Ccount run.Gcount run.Tcount run.Ncount run.experiment run.pool_member submission.accession submission.srasource submission.bioprojectsource seqdetective.n_mates seqdetective.mapping_rate.mate1 seqdetective.mapping_rate.mate2 seqdetective.nofeature_rate.mate1 seqdetective.nofeature_rate.mate2 seqdetective.sparsity.mate1 seqdetective.sparsity.mate2 seqdetective.pos_strand_rate.mate1 seqdetective.pos_strand_rate.mate2 seqdetective.readlen.mate1 seqdetective.readlen.mate2 seqdetective.judgement.mate1 seqdetective.judgement.mate2 seqdetective.judgement.reason platform_family instrument_generation read_bias selection_class prep_kit sc_or_bulk tech_class technology tech_variant submission.bioprojectsource.country earliest_date devstage_curation devstage_curation_coarse tissue_curation tissue_curation_coarse
55655 55655 SRR10674410 SRX7351703 SRS5811186 SRP237283 PRJNA595113 Transcriptomic responses of Bisphenol S on zebrafish PRJNA595113 Other To better understand the multiple interacting molecular mechanisms that are altered during BPS exposure global transcriptome sequencing RNA Seq was performed in embryonic fish to quantify expression levels of transcripts with a high sensitivity and broad genome coverage post BPS treatment19. To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.         BPS 100 1   isolate:biologocal replicate 10|age:120hpf|sex:not collected|tissue:embryo|collection date:2018 05 01|geo loc name:China:Guangdong|BioSampleModel:Model organism or animal                 Transcriptomic responses of Bisphenol S bps050110 bps050110 An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent Santa Clara CA USA with only high quality RNA samples 28 S:18 S=2.02.2 RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen China . The libraries were sequenced at the Beijing Genomics Institute BGI Shenzhen China on a BGISEQ500 platform with 50 bp single end reads under three replicates per treatment group.     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED BGISEQ BGISEQ-500   SRP237283     BPS_100_1_1.fq.gz BPS_100_1_2.fq.gz fastq fastq 6958801200.0 69588012.0 BPS 100 1 1.fq.gz 0:100 1:100 A:1852139865;C:1635606671;G:1596180575;T:1874072794;N:801295 100 100     1852139865 1635606671 1596180575 1874072794 801295 SRX7351703 SRS5811186 SRA1010884 Southern University of Science and Technology|School of Environmental Science and Engineering Southern University of Science and Technology 1 0.94716   0.09824   0.68475   0.47195   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2019-12-12 Larval Larval Embryo Imprecise All anatomical structures
55656 55656 SRR10674411 SRX7351702 SRS5811185 SRP237283 PRJNA595113 Transcriptomic responses of Bisphenol S on zebrafish PRJNA595113 Other To better understand the multiple interacting molecular mechanisms that are altered during BPS exposure global transcriptome sequencing RNA Seq was performed in embryonic fish to quantify expression levels of transcripts with a high sensitivity and broad genome coverage post BPS treatment19. To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.         BPS 10 3   isolate:biologocal replicate 9|age:120hpf|sex:not collected|tissue:embryo|collection date:2018 05 01|geo loc name:China:Guangdong|BioSampleModel:Model organism or animal                 Transcriptomic responses of Bisphenol S bps050109 bps050109 An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent Santa Clara CA USA with only high quality RNA samples 28 S:18 S=2.02.2 RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen China . The libraries were sequenced at the Beijing Genomics Institute BGI Shenzhen China on a BGISEQ500 platform with 50 bp single end reads under three replicates per treatment group.     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED BGISEQ BGISEQ-500   SRP237283     BPS_10_3_1.fq.gz BPS_10_3_2.fq.gz fastq fastq 6969574800.0 69695748.0 BPS 10 3 1.fq.gz 0:100 1:100 A:1860393053;C:1631995190;G:1597357772;T:1879188120;N:640665 100 100     1860393053 1631995190 1597357772 1879188120 640665 SRX7351702 SRS5811185 SRA1010884 Southern University of Science and Technology|School of Environmental Science and Engineering Southern University of Science and Technology 1 0.94597   0.10542   0.68016   0.4666   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2019-12-12 Larval Larval Embryo Imprecise All anatomical structures
55657 55657 SRR10674412 SRX7351701 SRS5811182 SRP237283 PRJNA595113 Transcriptomic responses of Bisphenol S on zebrafish PRJNA595113 Other To better understand the multiple interacting molecular mechanisms that are altered during BPS exposure global transcriptome sequencing RNA Seq was performed in embryonic fish to quantify expression levels of transcripts with a high sensitivity and broad genome coverage post BPS treatment19. To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.         BPS 10 2   isolate:biologocal replicate 8|age:120hpf|sex:not collected|tissue:embryo|collection date:2018 05 01|geo loc name:China:Guangdong|BioSampleModel:Model organism or animal                 Transcriptomic responses of Bisphenol S bps050108 bps050108 An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent Santa Clara CA USA with only high quality RNA samples 28 S:18 S=2.02.2 RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen China . The libraries were sequenced at the Beijing Genomics Institute BGI Shenzhen China on a BGISEQ500 platform with 50 bp single end reads under three replicates per treatment group.     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED BGISEQ BGISEQ-500   SRP237283     BPS_10_2_1.fq.gz BPS_10_2_2.fq.gz fastq fastq 6709340400.0 67093404.0 BPS 10 2 1.fq.gz 0:100 1:100 A:2036224090;C:1319652145;G:1297564214;T:2055258677;N:641274 100 100     2036224090 1319652145 1297564214 2055258677 641274 SRX7351701 SRS5811182 SRA1010884 Southern University of Science and Technology|School of Environmental Science and Engineering Southern University of Science and Technology 1 0.87778   0.38111   0.71543   0.56061   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2019-12-12 Larval Larval Embryo Imprecise All anatomical structures
55658 55658 SRR10674413 SRX7351700 SRS5811181 SRP237283 PRJNA595113 Transcriptomic responses of Bisphenol S on zebrafish PRJNA595113 Other To better understand the multiple interacting molecular mechanisms that are altered during BPS exposure global transcriptome sequencing RNA Seq was performed in embryonic fish to quantify expression levels of transcripts with a high sensitivity and broad genome coverage post BPS treatment19. To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.         BPS 10 1   isolate:biologocal replicate 7|age:120hpf|sex:not collected|tissue:embryo|collection date:2018 05 01|geo loc name:China:Guangdong|BioSampleModel:Model organism or animal                 Transcriptomic responses of Bisphenol S bps050107 bps050107 An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent Santa Clara CA USA with only high quality RNA samples 28 S:18 S=2.02.2 RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen China . The libraries were sequenced at the Beijing Genomics Institute BGI Shenzhen China on a BGISEQ500 platform with 50 bp single end reads under three replicates per treatment group.     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED BGISEQ BGISEQ-500   SRP237283     BPS_10_1_1.fq.gz BPS_10_1_2.fq.gz fastq fastq 6717746800.0 67177468.0 BPS 10 1 1.fq.gz 0:100 1:100 A:1787637885;C:1578942212;G:1548400030;T:1802147201;N:619472 100 100     1787637885 1578942212 1548400030 1802147201 619472 SRX7351700 SRS5811181 SRA1010884 Southern University of Science and Technology|School of Environmental Science and Engineering Southern University of Science and Technology 1 0.94726   0.10123   0.68919   0.45234   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2019-12-12 Larval Larval Embryo Imprecise All anatomical structures
55659 55659 SRR10674414 SRX7351699 SRS5811184 SRP237283 PRJNA595113 Transcriptomic responses of Bisphenol S on zebrafish PRJNA595113 Other To better understand the multiple interacting molecular mechanisms that are altered during BPS exposure global transcriptome sequencing RNA Seq was performed in embryonic fish to quantify expression levels of transcripts with a high sensitivity and broad genome coverage post BPS treatment19. To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.         BPS 1 3   isolate:biologocal replicate 6|age:120hpf|sex:not collected|tissue:embryo|collection date:2018 05 01|geo loc name:China:Guangdong|BioSampleModel:Model organism or animal                 Transcriptomic responses of Bisphenol S bps050106 bps050106 An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent Santa Clara CA USA with only high quality RNA samples 28 S:18 S=2.02.2 RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen China . The libraries were sequenced at the Beijing Genomics Institute BGI Shenzhen China on a BGISEQ500 platform with 50 bp single end reads under three replicates per treatment group.     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED BGISEQ BGISEQ-500   SRP237283     BPS_1_3_2.fq.gz BPS_1_3_1.fq.gz fastq fastq 6726522800.0 67265228.0 BPS 1 3 1.fq.gz 0:100 1:100 A:1789486049;C:1582069064;G:1548432478;T:1805913744;N:621465 100 100     1789486049 1582069064 1548432478 1805913744 621465 SRX7351699 SRS5811184 SRA1010884 Southern University of Science and Technology|School of Environmental Science and Engineering Southern University of Science and Technology 1 0.9465   0.09858   0.68442   0.45032   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2019-12-12 Larval Larval Embryo Imprecise All anatomical structures
55660 55660 SRR10674415 SRX7351698 SRS5811180 SRP237283 PRJNA595113 Transcriptomic responses of Bisphenol S on zebrafish PRJNA595113 Other To better understand the multiple interacting molecular mechanisms that are altered during BPS exposure global transcriptome sequencing RNA Seq was performed in embryonic fish to quantify expression levels of transcripts with a high sensitivity and broad genome coverage post BPS treatment19. To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.         BPS 1 2   isolate:biologocal replicate 5|age:120hpf|sex:not collected|tissue:embryo|collection date:2018 05 01|geo loc name:China:Guangdong|BioSampleModel:Model organism or animal                 Transcriptomic responses of Bisphenol S bps050105 bps050105 An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent Santa Clara CA USA with only high quality RNA samples 28 S:18 S=2.02.2 RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen China . The libraries were sequenced at the Beijing Genomics Institute BGI Shenzhen China on a BGISEQ500 platform with 50 bp single end reads under three replicates per treatment group.     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED BGISEQ BGISEQ-500   SRP237283     BPS_1_2_2.fq.gz BPS_1_2_1.fq.gz fastq fastq 6959685000.0 69596850.0 BPS 1 2 1.fq.gz 0:100 1:100 A:1914426129;C:1574998719;G:1542052351;T:1927550147;N:657654 100 100     1914426129 1574998719 1542052351 1927550147 657654 SRX7351698 SRS5811180 SRA1010884 Southern University of Science and Technology|School of Environmental Science and Engineering Southern University of Science and Technology 1 0.94034   0.14574   0.69934   0.47033   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2019-12-12 Larval Larval Embryo Imprecise All anatomical structures
55661 55661 SRR10674416 SRX7351697 SRS5811183 SRP237283 PRJNA595113 Transcriptomic responses of Bisphenol S on zebrafish PRJNA595113 Other To better understand the multiple interacting molecular mechanisms that are altered during BPS exposure global transcriptome sequencing RNA Seq was performed in embryonic fish to quantify expression levels of transcripts with a high sensitivity and broad genome coverage post BPS treatment19. To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.         BPS 1 1   isolate:biologocal replicate 4|age:120hpf|sex:not collected|tissue:embryo|collection date:2018 05 01|geo loc name:China:Guangdong|BioSampleModel:Model organism or animal                 Transcriptomic responses of Bisphenol S bps050104 bps050104 An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent Santa Clara CA USA with only high quality RNA samples 28 S:18 S=2.02.2 RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen China . The libraries were sequenced at the Beijing Genomics Institute BGI Shenzhen China on a BGISEQ500 platform with 50 bp single end reads under three replicates per treatment group.     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED BGISEQ BGISEQ-500   SRP237283     BPS_1_1_1.fq.gz BPS_1_1_2.fq.gz fastq fastq 7040826400.0 70408264.0 BPS 1 1 1.fq.gz 0:100 1:100 A:1915125100;C:1612334047;G:1578924466;T:1933922418;N:520369 100 100     1915125100 1612334047 1578924466 1933922418 520369 SRX7351697 SRS5811183 SRA1010884 Southern University of Science and Technology|School of Environmental Science and Engineering Southern University of Science and Technology 1 0.94114   0.13158   0.68903   0.47739   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2019-12-12 Larval Larval Embryo Imprecise All anatomical structures
55662 55662 SRR10674417 SRX7351696 SRS5811179 SRP237283 PRJNA595113 Transcriptomic responses of Bisphenol S on zebrafish PRJNA595113 Other To better understand the multiple interacting molecular mechanisms that are altered during BPS exposure global transcriptome sequencing RNA Seq was performed in embryonic fish to quantify expression levels of transcripts with a high sensitivity and broad genome coverage post BPS treatment19. To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.         BPS 0 1 3   isolate:biologocal replicate 3|age:120hpf|sex:not collected|tissue:embryo|collection date:2018 05 01|geo loc name:China:Guangdong|BioSampleModel:Model organism or animal                 Transcriptomic responses of Bisphenol S bps050103 bps050103 An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent Santa Clara CA USA with only high quality RNA samples 28 S:18 S=2.02.2 RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen China . The libraries were sequenced at the Beijing Genomics Institute BGI Shenzhen China on a BGISEQ500 platform with 50 bp single end reads under three replicates per treatment group.     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED BGISEQ BGISEQ-500   SRP237283     BPS_0_1_3_1.fq.gz BPS_0_1_3_2.fq.gz fastq fastq 6992676800.0 69926768.0 BPS 0 1 3 1.fq.gz 0:100 1:100 A:1860627581;C:1643489002;G:1610508221;T:1877536968;N:515028 100 100     1860627581 1643489002 1610508221 1877536968 515028 SRX7351696 SRS5811179 SRA1010884 Southern University of Science and Technology|School of Environmental Science and Engineering Southern University of Science and Technology 1 0.94485   0.101   0.68314   0.45711   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2019-12-12 Larval Larval Embryo Imprecise All anatomical structures
55663 55663 SRR10674418 SRX7351695 SRS5811178 SRP237283 PRJNA595113 Transcriptomic responses of Bisphenol S on zebrafish PRJNA595113 Other To better understand the multiple interacting molecular mechanisms that are altered during BPS exposure global transcriptome sequencing RNA Seq was performed in embryonic fish to quantify expression levels of transcripts with a high sensitivity and broad genome coverage post BPS treatment19. To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.         Cntrol3   isolate:biologocal replicate 18|age:120hpf|sex:not collected|tissue:embryo|collection date:2018 05 01|geo loc name:China:Guangdong|BioSampleModel:Model organism or animal                 Transcriptomic responses of Bisphenol S bps050118 bps050118 An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent Santa Clara CA USA with only high quality RNA samples 28 S:18 S=2.02.2 RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen China . The libraries were sequenced at the Beijing Genomics Institute BGI Shenzhen China on a BGISEQ500 platform with 50 bp single end reads under three replicates per treatment group.     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED BGISEQ BGISEQ-500   SRP237283     Cntrol3_1.fq.gz Cntrol3_2.fq.gz fastq fastq 6742983200.0 67429832.0 Cntrol3 1.fq.gz 0:100 1:100 A:1801392073;C:1577630219;G:1545614005;T:1817857809;N:489094 100 100     1801392073 1577630219 1545614005 1817857809 489094 SRX7351695 SRS5811178 SRA1010884 Southern University of Science and Technology|School of Environmental Science and Engineering Southern University of Science and Technology 1 0.94386   0.10779   0.68832   0.45545   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2019-12-12 Larval Larval Embryo Imprecise All anatomical structures
55664 55664 SRR10674419 SRX7351694 SRS5811177 SRP237283 PRJNA595113 Transcriptomic responses of Bisphenol S on zebrafish PRJNA595113 Other To better understand the multiple interacting molecular mechanisms that are altered during BPS exposure global transcriptome sequencing RNA Seq was performed in embryonic fish to quantify expression levels of transcripts with a high sensitivity and broad genome coverage post BPS treatment19. To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.         Cntrol2   isolate:biologocal replicate 17|age:120hpf|sex:not collected|tissue:embryo|collection date:2018 05 01|geo loc name:China:Guangdong|BioSampleModel:Model organism or animal                 Transcriptomic responses of Bisphenol S bps050117 bps050117 An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent Santa Clara CA USA with only high quality RNA samples 28 S:18 S=2.02.2 RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen China . The libraries were sequenced at the Beijing Genomics Institute BGI Shenzhen China on a BGISEQ500 platform with 50 bp single end reads under three replicates per treatment group.     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED BGISEQ BGISEQ-500   SRP237283     Cntrol2_1.fq.gz Cntrol2_2.fq.gz fastq fastq 6750661000.0 67506610.0 Cntrol2 1.fq.gz 0:100 1:100 A:1796606666;C:1585909518;G:1556014239;T:1811284557;N:846020 100 100     1796606666 1585909518 1556014239 1811284557 846020 SRX7351694 SRS5811177 SRA1010884 Southern University of Science and Technology|School of Environmental Science and Engineering Southern University of Science and Technology 1 0.94397   0.10007   0.68708   0.47779   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2019-12-12 Larval Larval Embryo Imprecise All anatomical structures
55665 55665 SRR10674420 SRX7351693 SRS5811174 SRP237283 PRJNA595113 Transcriptomic responses of Bisphenol S on zebrafish PRJNA595113 Other To better understand the multiple interacting molecular mechanisms that are altered during BPS exposure global transcriptome sequencing RNA Seq was performed in embryonic fish to quantify expression levels of transcripts with a high sensitivity and broad genome coverage post BPS treatment19. To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.         Cntrol1   isolate:biologocal replicate 16|age:120hpf|sex:not collected|tissue:embryo|collection date:2018 05 01|geo loc name:China:Guangdong|BioSampleModel:Model organism or animal                 Transcriptomic responses of Bisphenol S bps050116 bps050116 An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent Santa Clara CA USA with only high quality RNA samples 28 S:18 S=2.02.2 RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen China . The libraries were sequenced at the Beijing Genomics Institute BGI Shenzhen China on a BGISEQ500 platform with 50 bp single end reads under three replicates per treatment group.     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED BGISEQ BGISEQ-500   SRP237283     Cntrol1_1.fq.gz Cntrol1_2.fq.gz fastq fastq 6766663000.0 67666630.0 Cntrol1 1.fq.gz 0:100 1:100 A:1825736389;C:1564390057;G:1532835305;T:1842876742;N:824507 100 100     1825736389 1564390057 1532835305 1842876742 824507 SRX7351693 SRS5811174 SRA1010884 Southern University of Science and Technology|School of Environmental Science and Engineering Southern University of Science and Technology 1 0.94047   0.12338   0.68893   0.46407   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2019-12-12 Larval Larval Embryo Imprecise All anatomical structures
55666 55666 SRR10674421 SRX7351692 SRS5811176 SRP237283 PRJNA595113 Transcriptomic responses of Bisphenol S on zebrafish PRJNA595113 Other To better understand the multiple interacting molecular mechanisms that are altered during BPS exposure global transcriptome sequencing RNA Seq was performed in embryonic fish to quantify expression levels of transcripts with a high sensitivity and broad genome coverage post BPS treatment19. To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.         BPS 1000 3   isolate:biologocal replicate 15|age:120hpf|sex:not collected|tissue:embryo|collection date:2018 05 01|geo loc name:China:Guangdong|BioSampleModel:Model organism or animal                 Transcriptomic responses of Bisphenol S bps050115 bps050115 An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent Santa Clara CA USA with only high quality RNA samples 28 S:18 S=2.02.2 RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen China . The libraries were sequenced at the Beijing Genomics Institute BGI Shenzhen China on a BGISEQ500 platform with 50 bp single end reads under three replicates per treatment group.     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED BGISEQ BGISEQ-500   SRP237283     BPS_1000_3_1.fq.gz BPS_1000_3_2.fq.gz fastq fastq 6507622200.0 65076222.0 BPS 1000 3 1.fq.gz 0:100 1:100 A:1735402948;C:1525938362;G:1493787016;T:1751945676;N:548198 100 100     1735402948 1525938362 1493787016 1751945676 548198 SRX7351692 SRS5811176 SRA1010884 Southern University of Science and Technology|School of Environmental Science and Engineering Southern University of Science and Technology 1 0.94304   0.10593   0.6842   0.46348   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2019-12-12 Larval Larval Embryo Imprecise All anatomical structures
55667 55667 SRR10674422 SRX7351691 SRS5811173 SRP237283 PRJNA595113 Transcriptomic responses of Bisphenol S on zebrafish PRJNA595113 Other To better understand the multiple interacting molecular mechanisms that are altered during BPS exposure global transcriptome sequencing RNA Seq was performed in embryonic fish to quantify expression levels of transcripts with a high sensitivity and broad genome coverage post BPS treatment19. To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.         BPS 1000 2   isolate:biologocal replicate 14|age:120hpf|sex:not collected|tissue:embryo|collection date:2018 05 01|geo loc name:China:Guangdong|BioSampleModel:Model organism or animal                 Transcriptomic responses of Bisphenol S bps050114 bps050114 An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent Santa Clara CA USA with only high quality RNA samples 28 S:18 S=2.02.2 RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen China . The libraries were sequenced at the Beijing Genomics Institute BGI Shenzhen China on a BGISEQ500 platform with 50 bp single end reads under three replicates per treatment group.     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED BGISEQ BGISEQ-500   SRP237283     BPS_1000_2_1.fq.gz BPS_1000_2_2.fq.gz fastq fastq 6740712000.0 67407120.0 BPS 1000 2 1.fq.gz 0:100 1:100 A:1816870993;C:1562402111;G:1527381283;T:1833284067;N:773546 100 100     1816870993 1562402111 1527381283 1833284067 773546 SRX7351691 SRS5811173 SRA1010884 Southern University of Science and Technology|School of Environmental Science and Engineering Southern University of Science and Technology 1 0.94327   0.11511   0.70033   0.4551   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2019-12-12 Larval Larval Embryo Imprecise All anatomical structures
55668 55668 SRR10674423 SRX7351690 SRS5811175 SRP237283 PRJNA595113 Transcriptomic responses of Bisphenol S on zebrafish PRJNA595113 Other To better understand the multiple interacting molecular mechanisms that are altered during BPS exposure global transcriptome sequencing RNA Seq was performed in embryonic fish to quantify expression levels of transcripts with a high sensitivity and broad genome coverage post BPS treatment19. To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.         BPS 1000 1   isolate:biologocal replicate 13|age:120hpf|sex:not collected|tissue:embryo|collection date:2018 05 01|geo loc name:China:Guangdong|BioSampleModel:Model organism or animal                 Transcriptomic responses of Bisphenol S bps050113 bps050113 An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent Santa Clara CA USA with only high quality RNA samples 28 S:18 S=2.02.2 RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen China . The libraries were sequenced at the Beijing Genomics Institute BGI Shenzhen China on a BGISEQ500 platform with 50 bp single end reads under three replicates per treatment group.     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED BGISEQ BGISEQ-500   SRP237283     BPS_1000_1_1.fq.gz BPS_1000_1_2.fq.gz fastq fastq 6727750400.0 67277504.0 BPS 1000 1 1.fq.gz 0:100 1:100 A:1803578734;C:1568712705;G:1535618959;T:1819016739;N:823263 100 100     1803578734 1568712705 1535618959 1819016739 823263 SRX7351690 SRS5811175 SRA1010884 Southern University of Science and Technology|School of Environmental Science and Engineering Southern University of Science and Technology 1 0.94457   0.1118   0.69087   0.46815   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2019-12-12 Larval Larval Embryo Imprecise All anatomical structures
55669 55669 SRR10674424 SRX7351689 SRS5811172 SRP237283 PRJNA595113 Transcriptomic responses of Bisphenol S on zebrafish PRJNA595113 Other To better understand the multiple interacting molecular mechanisms that are altered during BPS exposure global transcriptome sequencing RNA Seq was performed in embryonic fish to quantify expression levels of transcripts with a high sensitivity and broad genome coverage post BPS treatment19. To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.         BPS 100 3   isolate:biologocal replicate 12|age:120hpf|sex:not collected|tissue:embryo|collection date:2018 05 01|geo loc name:China:Guangdong|BioSampleModel:Model organism or animal                 Transcriptomic responses of Bisphenol S bps050112 bps050112 An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent Santa Clara CA USA with only high quality RNA samples 28 S:18 S=2.02.2 RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen China . The libraries were sequenced at the Beijing Genomics Institute BGI Shenzhen China on a BGISEQ500 platform with 50 bp single end reads under three replicates per treatment group.     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED BGISEQ BGISEQ-500   SRP237283     BPS_100_3_1.fq.gz BPS_100_3_2.fq.gz fastq fastq 6962431800.0 69624318.0 BPS 100 3 1.fq.gz 0:100 1:100 A:1865300693;C:1624120289;G:1585691091;T:1886538935;N:780792 100 100     1865300693 1624120289 1585691091 1886538935 780792 SRX7351689 SRS5811172 SRA1010884 Southern University of Science and Technology|School of Environmental Science and Engineering Southern University of Science and Technology 1 0.94581   0.10195   0.68288   0.47174   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2019-12-12 Larval Larval Embryo Imprecise All anatomical structures
55670 55670 SRR10674425 SRX7351688 SRS5811171 SRP237283 PRJNA595113 Transcriptomic responses of Bisphenol S on zebrafish PRJNA595113 Other To better understand the multiple interacting molecular mechanisms that are altered during BPS exposure global transcriptome sequencing RNA Seq was performed in embryonic fish to quantify expression levels of transcripts with a high sensitivity and broad genome coverage post BPS treatment19. To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.         BPS 100 2   isolate:biologocal replicate 11|age:120hpf|sex:not collected|tissue:embryo|collection date:2018 05 01|geo loc name:China:Guangdong|BioSampleModel:Model organism or animal                 Transcriptomic responses of Bisphenol S bps050111 bps050111 An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent Santa Clara CA USA with only high quality RNA samples 28 S:18 S=2.02.2 RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen China . The libraries were sequenced at the Beijing Genomics Institute BGI Shenzhen China on a BGISEQ500 platform with 50 bp single end reads under three replicates per treatment group.     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED BGISEQ BGISEQ-500   SRP237283     BPS_100_2_1.fq.gz BPS_100_2_2.fq.gz fastq fastq 7201035800.0 72010358.0 BPS 100 2 1.fq.gz 0:100 1:100 A:2115590854;C:1489181336;G:1459936470;T:2135514629;N:812511 100 100     2115590854 1489181336 1459936470 2135514629 812511 SRX7351688 SRS5811171 SRA1010884 Southern University of Science and Technology|School of Environmental Science and Engineering Southern University of Science and Technology 1 0.90678   0.29289   0.70735   0.49554   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2019-12-12 Larval Larval Embryo Imprecise All anatomical structures
55671 55671 SRR10674426 SRX7351687 SRS5811170 SRP237283 PRJNA595113 Transcriptomic responses of Bisphenol S on zebrafish PRJNA595113 Other To better understand the multiple interacting molecular mechanisms that are altered during BPS exposure global transcriptome sequencing RNA Seq was performed in embryonic fish to quantify expression levels of transcripts with a high sensitivity and broad genome coverage post BPS treatment19. To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.         BPS 0 1 2   isolate:biologocal replicate 2|age:120hpf|sex:not collected|tissue:embryo|collection date:2018 05 01|geo loc name:China:Guangdong|BioSampleModel:Model organism or animal                 Transcriptomic responses of Bisphenol S bps050102 bps050102 An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent Santa Clara CA USA with only high quality RNA samples 28 S:18 S=2.02.2 RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen China . The libraries were sequenced at the Beijing Genomics Institute BGI Shenzhen China on a BGISEQ500 platform with 50 bp single end reads under three replicates per treatment group.     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED BGISEQ BGISEQ-500   SRP237283     BPS_0_1_2_1.fq.gz BPS_0_1_2_2.fq.gz fastq fastq 7022382800.0 70223828.0 BPS 0 1 2 1.fq.gz 0:100 1:100 A:1853514579;C:1663935080;G:1635277415;T:1869136960;N:518766 100 100     1853514579 1663935080 1635277415 1869136960 518766 SRX7351687 SRS5811170 SRA1010884 Southern University of Science and Technology|School of Environmental Science and Engineering Southern University of Science and Technology 1 0.94712   0.09313   0.6814   0.47256   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2019-12-12 Larval Larval Embryo Imprecise All anatomical structures
55672 55672 SRR10674427 SRX7351686 SRS5811167 SRP237283 PRJNA595113 Transcriptomic responses of Bisphenol S on zebrafish PRJNA595113 Other To better understand the multiple interacting molecular mechanisms that are altered during BPS exposure global transcriptome sequencing RNA Seq was performed in embryonic fish to quantify expression levels of transcripts with a high sensitivity and broad genome coverage post BPS treatment19. To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.         BPS 0 1 1   isolate:biologocal replicate 1|age:120hpf|sex:not collected|tissue:embryo|collection date:2018 05 01|geo loc name:China:Guangdong|BioSampleModel:Model organism or animal                 Transcriptomic responses of Bisphenol S bps050101 bps050101 An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent Santa Clara CA USA with only high quality RNA samples 28 S:18 S=2.02.2 RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen China . The libraries were sequenced at the Beijing Genomics Institute BGI Shenzhen China on a BGISEQ500 platform with 50 bp single end reads under three replicates per treatment group.     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED BGISEQ BGISEQ-500   SRP237283     BPS_0_1_1_1.fq.gz BPS_0_1_1_2.fq.gz fastq fastq 7013900400.0 70139004.0 BPS 0 1 1 1.fq.gz 0:100 1:100 A:1885826391;C:1629114228;G:1597181244;T:1901261511;N:517026 100 100     1885826391 1629114228 1597181244 1901261511 517026 SRX7351686 SRS5811167 SRA1010884 Southern University of Science and Technology|School of Environmental Science and Engineering Southern University of Science and Technology 1 0.94226   0.11616   0.69014   0.45679   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2019-12-12 Larval Larval Embryo Imprecise All anatomical structures
64197 64197 SRR14319883 SRX10675035 SRS8769036 SRP316198 PRJNA724884 Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and terfa compromised zebrafish embryos PRJNA724884 Other The goals of this study are to compare NGS in 3dpf zebrafish embryo post knockout terfa telomere repeats binding factor 2. In order to investigate the role of terfa in DDR telomere protection and neuro development.         yyl homo zf rep2   replicate:2|date:2/20/2021/3pm|breed:AB|age:10 day|dev stage:embryo|sex:not determined|tissue:embryo|BioSampleModel:Model organism or animal                 RNA Seq of danio rerio: 3d embryos LDA9530 LDA9530 RNA libraries were prepared for sequencing using standard Illumina protocols     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED ILLUMINA HiSeq X Ten   SRP316198     TRF2_homozygous_3d_2_LDA9530Aligned.sortedByCoord.out.bam bam 13532124350.0 45108312.0 TRF2 homozygous 3d 2 LDA9530Aligned.sortedByCoord.out.bam 0:150.00 1:150.00 A:3411777260;C:3360449196;G:3332955645;T:3425874531;N:1067718 150 150     3411777260 3360449196 3332955645 3425874531 1067718 SRX10675035 SRS8769036 SRA1223267 Ruijin hospital, Shanghai, China|Emergency Medchine Ruijin hospital, Shanghai, China 2 0.96358 0.96219 0.06413 0.06452 0.67101 0.67304 0.45519 0.45225 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2021-04-24 Larval Larval Embryo Imprecise All anatomical structures
64198 64198 SRR14319884 SRX10675034 SRS8769035 SRP316198 PRJNA724884 Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and terfa compromised zebrafish embryos PRJNA724884 Other The goals of this study are to compare NGS in 3dpf zebrafish embryo post knockout terfa telomere repeats binding factor 2. In order to investigate the role of terfa in DDR telomere protection and neuro development.         yyl homo zf rep1   replicate:1|date:2/20/2021/2pm|breed:AB|age:9 day|dev stage:embryo|sex:not determined|tissue:embryo|BioSampleModel:Model organism or animal                 RNA Seq of danio rerio: 3d embryos LDA9528 LDA9528 RNA libraries were prepared for sequencing using standard Illumina protocols     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED ILLUMINA HiSeq X Ten   SRP316198   assembly:GRCz11 TRF2_homozygous_3d_1_LDA9528Aligned.sortedByCoord.out.bam bam 14927377118.0 51943892.0 TRF2 homozygous 3d 1 LDA9528Aligned.sortedByCoord.out.bam 0:143.69 1:143.69 A:3703977593;C:3766420543;G:3739925195;T:3715825628;N:1228159 143 143     3703977593 3766420543 3739925195 3715825628 1228159 SRX10675034 SRS8769035 SRA1223267 Ruijin hospital, Shanghai, China|Emergency Medchine Ruijin hospital, Shanghai, China 2 0.96471 0.96437 0.0498 0.05004 0.66906 0.67036 0.45421 0.45111 98 98 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2021-05-17 Larval Larval Embryo Imprecise All anatomical structures
64199 64199 SRR14319885 SRX10675033 SRS8769034 SRP316198 PRJNA724884 Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and terfa compromised zebrafish embryos PRJNA724884 Other The goals of this study are to compare NGS in 3dpf zebrafish embryo post knockout terfa telomere repeats binding factor 2. In order to investigate the role of terfa in DDR telomere protection and neuro development.         yyl hybrid zf rep3   replicate:3|date:2/15/2021/12am|breed:AB|age:8 day|dev stage:embryo|sex:not determined|tissue:embryo|BioSampleModel:Model organism or animal                 RNA Seq of danio rerio: 3d embryos LDA9527 LDA9527 RNA libraries were prepared for sequencing using standard Illumina protocols     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED ILLUMINA HiSeq X Ten   SRP316198     TRF2_hybrid_3d_3_LDA9527Aligned.sortedByCoord.out.bam bam 12450675900.0 41503258.0 TRF2 hybrid 3d 3 LDA9527Aligned.sortedByCoord.out.bam 0:150.00 1:150.00 A:3154217597;C:3079057917;G:3050871836;T:3166472619;N:55931 150 150     3154217597 3079057917 3050871836 3166472619 55931 SRX10675033 SRS8769034 SRA1223267 Ruijin hospital, Shanghai, China|Emergency Medchine Ruijin hospital, Shanghai, China 2 0.97361 0.97378 0.0695 0.06953 0.65884 0.65922 0.44942 0.45124 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2021-04-24 Larval Larval Embryo Imprecise All anatomical structures
64200 64200 SRR14319886 SRX10675032 SRS8769033 SRP316198 PRJNA724884 Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and terfa compromised zebrafish embryos PRJNA724884 Other The goals of this study are to compare NGS in 3dpf zebrafish embryo post knockout terfa telomere repeats binding factor 2. In order to investigate the role of terfa in DDR telomere protection and neuro development.         yyl hybrid zf rep2   replicate:2|date:2/15/2021/11am|breed:AB|age:7 day|dev stage:embryo|sex:not determined|tissue:embryo|BioSampleModel:Model organism or animal                 RNA Seq of danio rerio: 3d embryos LDA9526 LDA9526 RNA libraries were prepared for sequencing using standard Illumina protocols     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED ILLUMINA HiSeq X Ten   SRP316198     TRF2_hybrid_3d_2_LDA9526Aligned.sortedByCoord.out.bam bam 13705312262.0 45685613.0 TRF2 hybrid 3d 2 LDA9526Aligned.sortedByCoord.out.bam 0:150.00 1:150.00 A:3456147807;C:3403904273;G:3377881707;T:3466298988;N:1079487 150 150     3456147807 3403904273 3377881707 3466298988 1079487 SRX10675032 SRS8769033 SRA1223267 Ruijin hospital, Shanghai, China|Emergency Medchine Ruijin hospital, Shanghai, China 2 0.96349 0.96378 0.06028 0.06096 0.66296 0.66655 0.46411 0.4594 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2021-04-24 Larval Larval Embryo Imprecise All anatomical structures
64201 64201 SRR14319887 SRX10675031 SRS8769032 SRP316198 PRJNA724884 Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and terfa compromised zebrafish embryos PRJNA724884 Other The goals of this study are to compare NGS in 3dpf zebrafish embryo post knockout terfa telomere repeats binding factor 2. In order to investigate the role of terfa in DDR telomere protection and neuro development.         yyl hybrid zf rep1   replicate:1|date:2/15/2021/10am|breed:AB|age:6 day|dev stage:embryo|sex:not determined|tissue:embryo|BioSampleModel:Model organism or animal                 RNA Seq of danio rerio: 3d embryos LDA9525 LDA9525 RNA libraries were prepared for sequencing using standard Illumina protocols     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED ILLUMINA HiSeq X Ten   SRP316198     TRF2_hybrid_3d_1_LDA9525Aligned.sortedByCoord.out.bam bam 14038287516.0 46795622.0 TRF2 hybrid 3d 1 LDA9525Aligned.sortedByCoord.out.bam 0:150.00 1:150.00 A:3551265371;C:3474535373;G:3450978358;T:3560404727;N:1103687 150 150     3551265371 3474535373 3450978358 3560404727 1103687 SRX10675031 SRS8769032 SRA1223267 Ruijin hospital, Shanghai, China|Emergency Medchine Ruijin hospital, Shanghai, China 2 0.96271 0.96308 0.06105 0.06177 0.66403 0.6672 0.45387 0.4559 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2021-04-24 Larval Larval Embryo Imprecise All anatomical structures
64202 64202 SRR14319888 SRX10675030 SRS8769031 SRP316198 PRJNA724884 Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and terfa compromised zebrafish embryos PRJNA724884 Other The goals of this study are to compare NGS in 3dpf zebrafish embryo post knockout terfa telomere repeats binding factor 2. In order to investigate the role of terfa in DDR telomere protection and neuro development.         yyl wt zf rep3   replicate:3|date:2/14/2021/11am|breed:AB|age:5 day|dev stage:embryo|sex:not determined|tissue:embryo|BioSampleModel:Model organism or animal                 RNA Seq of danio rerio: 3d embryos LDA9524 LDA9524 RNA libraries were prepared for sequencing using standard Illumina protocols     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED ILLUMINA HiSeq X Ten   SRP316198   assembly:GRCz11 WT_3d_3_LDA9524Aligned.sortedByCoord.out.bam bam 14859562542.0 49533110.0 WT 3d 3 LDA9524Aligned.sortedByCoord.out.bam 0:150.00 1:150.00 A:3726520603;C:3710201397;G:3682621106;T:3739080755;N:1138681 150 150     3726520603 3710201397 3682621106 3739080755 1138681 SRX10675030 SRS8769031 SRA1223267 Ruijin hospital, Shanghai, China|Emergency Medchine Ruijin hospital, Shanghai, China 2 0.96602 0.96434 0.05466 0.05515 0.66659 0.66983 0.45294 0.44988 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2021-05-17 Larval Larval Embryo Imprecise All anatomical structures
64203 64203 SRR14319889 SRX10675029 SRS8769030 SRP316198 PRJNA724884 Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and terfa compromised zebrafish embryos PRJNA724884 Other The goals of this study are to compare NGS in 3dpf zebrafish embryo post knockout terfa telomere repeats binding factor 2. In order to investigate the role of terfa in DDR telomere protection and neuro development.         yyl wt zf rep2   replicate:2|date:2/14/2021/10am|breed:AB|age:4 day|dev stage:embryo|sex:not determined|tissue:embryo|BioSampleModel:Model organism or animal                 RNA Seq of danio rerio: 3d embryos LDA9523 LDA9523 RNA libraries were prepared for sequencing using standard Illumina protocols     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED ILLUMINA HiSeq X Ten   SRP316198     WT_3d_2_LDA9523Aligned.sortedByCoord.out.bam bam 14514400332.0 48381654.0 WT 3d 2 LDA9523Aligned.sortedByCoord.out.bam 0:150.00 1:150.00 A:3705089802;C:3553212549;G:3520322215;T:3734808448;N:967318 150 150     3705089802 3553212549 3520322215 3734808448 967318 SRX10675029 SRS8769030 SRA1223267 Ruijin hospital, Shanghai, China|Emergency Medchine Ruijin hospital, Shanghai, China 2 0.96308 0.96421 0.07369 0.0744 0.6552 0.65888 0.46075 0.45705 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2021-04-24 Larval Larval Embryo Imprecise All anatomical structures
64204 64204 SRR14319890 SRX10675028 SRS8769029 SRP316198 PRJNA724884 Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and terfa compromised zebrafish embryos PRJNA724884 Other The goals of this study are to compare NGS in 3dpf zebrafish embryo post knockout terfa telomere repeats binding factor 2. In order to investigate the role of terfa in DDR telomere protection and neuro development.         yyl wt zf rep1   replicate:1|date:2/14/2021/9am|breed:AB|age:3 day|dev stage:embryo|sex:not determined|tissue:embryo|BioSampleModel:Model organism or animal                 RNA Seq of danio rerio: 3d embryos LDA9522 LDA9522 RNA libraries were prepared for sequencing using standard Illumina protocols     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED ILLUMINA HiSeq X Ten   SRP316198     WT_3d_1_LDA9522Aligned.sortedByCoord.out.bam bam 18010289414.0 60034644.0 WT 3d 1 LDA9522Aligned.sortedByCoord.out.bam 0:150.00 1:150.00 A:4584048700;C:4421083340;G:4382775986;T:4621251990;N:1129398 150 150     4584048700 4421083340 4382775986 4621251990 1129398 SRX10675028 SRS8769029 SRA1223267 Ruijin hospital, Shanghai, China|Emergency Medchine Ruijin hospital, Shanghai, China 2 0.96428 0.96501 0.06803 0.06875 0.65458 0.65837 0.46378 0.45821 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2021-04-29 Larval Larval Embryo Imprecise All anatomical structures
65871 65871 SRR15684056 SRX11980374 SRS9988552 SRP335145 PRJNA758770 Danio rerio Raw sequence reads PRJNA758770 Whole Genome Sequencing A polyfluorinated compound H PFMO2OSA induced transcriptome alters in early zebrafish embryo         PFVE80 1.R2   strain:AB|age:120h|sex:N1|tissue:embyo|treatment:PFVE 1.2|BioSampleModel:Model organism or animal                 RNA Seq of embryo SAMN21035685 SAMN21035685 Illumina NovaSeq 6000     RNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE ILLUMINA Illumina NovaSeq 6000   SRP335145     PFVE80_1.R2.fastq.gz fastq 3296094440.0 21828440.0 PFVE80 1.R2.fastq.gz 0:0 1:151 A:915433386;C:730204213;G:755908505;T:894514826;N:33510 0 151     915433386 730204213 755908505 894514826 33510 SRX11980374 SRS9988552 SRA1287281 Chinese Academy of Sciences|Institute of Zoology Chinese Academy of Sciences 1 0.93185   0.1143   0.69244   0.47999   151   B   usable mapping rate illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-01 Larval Larval Embryo Imprecise All anatomical structures
65872 65872 SRR15684057 SRX11980373 SRS9988551 SRP335145 PRJNA758770 Danio rerio Raw sequence reads PRJNA758770 Whole Genome Sequencing A polyfluorinated compound H PFMO2OSA induced transcriptome alters in early zebrafish embryo         PFVE80 1.R1   strain:AB|age:120h|sex:N1|tissue:embyo|treatment:PFVE 1.1|BioSampleModel:Model organism or animal                 RNA Seq of embryo SAMN21035684 SAMN21035684 Illumina NovaSeq 6000     RNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE ILLUMINA Illumina NovaSeq 6000   SRP335145     PFVE80_1.R1.fastq.gz fastq 3296094440.0 21828440.0 PFVE80 1.R1.fastq.gz 0:151 1:0 A:912467078;C:735556764;G:752785505;T:895102572;N:182521 151 0     912467078 735556764 752785505 895102572 182521 SRX11980373 SRS9988551 SRA1287281 Chinese Academy of Sciences|Institute of Zoology Chinese Academy of Sciences 1 0.93451   0.11559   0.69063   0.48574   151   B   usable mapping rate illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-01 Larval Larval Embryo Imprecise All anatomical structures
65873 65873 SRR15684058 SRX11980372 SRS9988550 SRP335145 PRJNA758770 Danio rerio Raw sequence reads PRJNA758770 Whole Genome Sequencing A polyfluorinated compound H PFMO2OSA induced transcriptome alters in early zebrafish embryo         PFVE0 4.R2   strain:AB|age:120h|sex:N1|tissue:embyo|treatment:H20 4.2|BioSampleModel:Model organism or animal                 RNA Seq of embryo SAMN21035683 SAMN21035683 Illumina NovaSeq 6000     RNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE ILLUMINA Illumina NovaSeq 6000   SRP335145     PFVE0_4.R2.fastq.gz fastq 3759908003.0 24900053.0 PFVE0 4.R2.fastq.gz 0:0 1:151 A:1000945494;C:875720109;G:898795328;T:984408950;N:38122 0 151     1000945494 875720109 898795328 984408950 38122 SRX11980372 SRS9988550 SRA1287281 Chinese Academy of Sciences|Institute of Zoology Chinese Academy of Sciences 1 0.9408   0.0837   0.67584   0.46787   151   B   usable mapping rate illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-01 Larval Larval Embryo Imprecise All anatomical structures
65874 65874 SRR15684059 SRX11980371 SRS9988549 SRP335145 PRJNA758770 Danio rerio Raw sequence reads PRJNA758770 Whole Genome Sequencing A polyfluorinated compound H PFMO2OSA induced transcriptome alters in early zebrafish embryo         PFVE0 4.R1   strain:AB|age:120h|sex:N1|tissue:embyo|treatment:H20 4.1|BioSampleModel:Model organism or animal                 RNA Seq of embryo SAMN21035682 SAMN21035682 Illumina NovaSeq 6000     RNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE ILLUMINA Illumina NovaSeq 6000   SRP335145     PFVE0_4.R1.fastq.gz fastq 3759908003.0 24900053.0 PFVE0 4.R1.fastq.gz 0:151 1:0 A:998344987;C:880686863;G:894577099;T:986091832;N:207222 151 0     998344987 880686863 894577099 986091832 207222 SRX11980371 SRS9988549 SRA1287281 Chinese Academy of Sciences|Institute of Zoology Chinese Academy of Sciences 1 0.94175   0.08443   0.67334   0.46255   151   B   usable mapping rate illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-01 Larval Larval Embryo Imprecise All anatomical structures
65875 65875 SRR15684060 SRX11980370 SRS9988548 SRP335145 PRJNA758770 Danio rerio Raw sequence reads PRJNA758770 Whole Genome Sequencing A polyfluorinated compound H PFMO2OSA induced transcriptome alters in early zebrafish embryo         PFVE0 3.R2   strain:AB|age:120h|sex:N1|tissue:embyo|treatment:H20 3.2|BioSampleModel:Model organism or animal                 RNA Seq of embryo SAMN21035681 SAMN21035681 Illumina NovaSeq 6000     RNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE ILLUMINA Illumina NovaSeq 6000   SRP335145     PFVE0_3.R2.fastq.gz fastq 4110903728.0 27224528.0 PFVE0 3.R2.fastq.gz 0:0 1:151 A:1107531796;C:945271780;G:971476953;T:1086581356;N:41843 0 151     1107531796 945271780 971476953 1086581356 41843 SRX11980370 SRS9988548 SRA1287281 Chinese Academy of Sciences|Institute of Zoology Chinese Academy of Sciences 1 0.94068   0.08433   0.67243   0.45982   151   B   usable mapping rate illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-01 Larval Larval Embryo Imprecise All anatomical structures
65876 65876 SRR15684061 SRX11980369 SRS9988547 SRP335145 PRJNA758770 Danio rerio Raw sequence reads PRJNA758770 Whole Genome Sequencing A polyfluorinated compound H PFMO2OSA induced transcriptome alters in early zebrafish embryo         PFVE0 3.R1   strain:AB|age:120h|sex:N1|tissue:embyo|treatment:H2O 3.1|BioSampleModel:Model organism or animal                 RNA Seq of embryo SAMN21035680 SAMN21035680 Illumina NovaSeq 6000     RNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE ILLUMINA Illumina NovaSeq 6000   SRP335145     PFVE0_3.R1.fastq.gz fastq 4110903728.0 27224528.0 PFVE0 3.R1.fastq.gz 0:151 1:0 A:1103234050;C:949977333;G:968068226;T:1089400056;N:224063 151 0     1103234050 949977333 968068226 1089400056 224063 SRX11980369 SRS9988547 SRA1287281 Chinese Academy of Sciences|Institute of Zoology Chinese Academy of Sciences 1 0.94257   0.08462   0.66969   0.46513   151   B   usable mapping rate illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-01 Larval Larval Embryo Imprecise All anatomical structures
65877 65877 SRR15684062 SRX11980368 SRS9988546 SRP335145 PRJNA758770 Danio rerio Raw sequence reads PRJNA758770 Whole Genome Sequencing A polyfluorinated compound H PFMO2OSA induced transcriptome alters in early zebrafish embryo         PFVE0 2.R2   strain:AB|age:120h|sex:N1|tissue:embyo|treatment:H20 2.2|BioSampleModel:Model organism or animal                 RNA Seq of embryo SAMN21035679 SAMN21035679 Illumina NovaSeq 6000     RNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE ILLUMINA Illumina NovaSeq 6000   SRP335145     PFVE0_2.R2.fastq.gz fastq 3303194158.0 21875458.0 PFVE0 2.R2.fastq.gz 0:0 1:151 A:882380354;C:765252922;G:789054306;T:866472679;N:33897 0 151     882380354 765252922 789054306 866472679 33897 SRX11980368 SRS9988546 SRA1287281 Chinese Academy of Sciences|Institute of Zoology Chinese Academy of Sciences 1 0.9451   0.07962   0.68034   0.46622   151   B   usable mapping rate illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-01 Larval Larval Embryo Imprecise All anatomical structures
65878 65878 SRR15684063 SRX11980367 SRS9988545 SRP335145 PRJNA758770 Danio rerio Raw sequence reads PRJNA758770 Whole Genome Sequencing A polyfluorinated compound H PFMO2OSA induced transcriptome alters in early zebrafish embryo         PFVE0 2.R1   strain:AB|age:120h|sex:N1|tissue:embyo|treatment:H20 2.1|BioSampleModel:Model organism or animal                 RNA Seq of embryo SAMN21035678 SAMN21035678 Illumina NovaSeq 6000     RNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE ILLUMINA Illumina NovaSeq 6000   SRP335145     PFVE0_2.R1.fastq.gz fastq 3303194158.0 21875458.0 PFVE0 2.R1.fastq.gz 0:151 1:0 A:880833177;C:770677822;G:784641418;T:866859145;N:182596 151 0     880833177 770677822 784641418 866859145 182596 SRX11980367 SRS9988545 SRA1287281 Chinese Academy of Sciences|Institute of Zoology Chinese Academy of Sciences 1 0.94592   0.07933   0.67939   0.46558   151   B   usable mapping rate illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-01 Larval Larval Embryo Imprecise All anatomical structures
65879 65879 SRR15684064 SRX11980366 SRS9988544 SRP335145 PRJNA758770 Danio rerio Raw sequence reads PRJNA758770 Whole Genome Sequencing A polyfluorinated compound H PFMO2OSA induced transcriptome alters in early zebrafish embryo         PFVE80 4.R2   strain:AB|age:120h|sex:N1|tissue:embyo|treatment:PFVE 4.2|BioSampleModel:Model organism or animal                 RNA Seq of embryo SAMN21035691 SAMN21035691 Illumina NovaSeq 6000     RNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE ILLUMINA Illumina NovaSeq 6000   SRP335145     PFVE80_4.R2.fastq.gz fastq 3525791110.0 23349610.0 PFVE80 4.R2.fastq.gz 0:0 1:151 A:962908653;C:796116922;G:823506287;T:943223019;N:36229 0 151     962908653 796116922 823506287 943223019 36229 SRX11980366 SRS9988544 SRA1287281 Chinese Academy of Sciences|Institute of Zoology Chinese Academy of Sciences 1 0.93487   0.10192   0.68193   0.48466   151   B   usable mapping rate illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-01 Larval Larval Embryo Imprecise All anatomical structures
65880 65880 SRR15684065 SRX11980365 SRS9988543 SRP335145 PRJNA758770 Danio rerio Raw sequence reads PRJNA758770 Whole Genome Sequencing A polyfluorinated compound H PFMO2OSA induced transcriptome alters in early zebrafish embryo         PFVE80 4.R1   strain:AB|age:120h|sex:N1|tissue:embyo|treatment:PFVE 4.1|BioSampleModel:Model organism or animal                 RNA Seq of embryo SAMN21035690 SAMN21035690 Illumina NovaSeq 6000     RNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE ILLUMINA Illumina NovaSeq 6000   SRP335145     PFVE80_4.R1.fastq.gz fastq 3525791110.0 23349610.0 PFVE80 4.R1.fastq.gz 0:151 1:0 A:961509026;C:801265885;G:818953915;T:943866829;N:195455 151 0     961509026 801265885 818953915 943866829 195455 SRX11980365 SRS9988543 SRA1287281 Chinese Academy of Sciences|Institute of Zoology Chinese Academy of Sciences 1 0.93687   0.1026   0.67978   0.48493   151   B   usable mapping rate illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-01 Larval Larval Embryo Imprecise All anatomical structures
65881 65881 SRR15684066 SRX11980364 SRS9988542 SRP335145 PRJNA758770 Danio rerio Raw sequence reads PRJNA758770 Whole Genome Sequencing A polyfluorinated compound H PFMO2OSA induced transcriptome alters in early zebrafish embryo         PFVE80 3.R2   strain:AB|age:120h|sex:N1|tissue:embyo|treatment:PFVE 3.2|BioSampleModel:Model organism or animal                 RNA Seq of embryo SAMN21035689 SAMN21035689 Illumina NovaSeq 6000     RNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE ILLUMINA Illumina NovaSeq 6000   SRP335145     PFVE80_3.R2.fastq.gz fastq 3894722615.0 25792865.0 PFVE80 3.R2.fastq.gz 0:0 1:151 A:1061897475;C:882432313;G:910119669;T:1040233778;N:39380 0 151     1061897475 882432313 910119669 1040233778 39380 SRX11980364 SRS9988542 SRA1287281 Chinese Academy of Sciences|Institute of Zoology Chinese Academy of Sciences 1 0.92449   0.09119   0.68256   0.47211   151   B   usable mapping rate illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-01 Larval Larval Embryo Imprecise All anatomical structures
65882 65882 SRR15684067 SRX11980363 SRS9988541 SRP335145 PRJNA758770 Danio rerio Raw sequence reads PRJNA758770 Whole Genome Sequencing A polyfluorinated compound H PFMO2OSA induced transcriptome alters in early zebrafish embryo         PFVE80 3.R1   strain:AB|age:120h|sex:N1|tissue:embyo|treatment:PFVE 3.1|BioSampleModel:Model organism or animal                 RNA Seq of embryo SAMN21035688 SAMN21035688 Illumina NovaSeq 6000     RNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE ILLUMINA Illumina NovaSeq 6000   SRP335145     PFVE80_3.R1.fastq.gz fastq 3894722615.0 25792865.0 PFVE80 3.R1.fastq.gz 0:151 1:0 A:1058737478;C:888069233;G:906287035;T:1041414732;N:214137 151 0     1058737478 888069233 906287035 1041414732 214137 SRX11980363 SRS9988541 SRA1287281 Chinese Academy of Sciences|Institute of Zoology Chinese Academy of Sciences 1 0.92619   0.09159   0.68219   0.47411   151   B   usable mapping rate illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-01 Larval Larval Embryo Imprecise All anatomical structures
65883 65883 SRR15684068 SRX11980362 SRS9988540 SRP335145 PRJNA758770 Danio rerio Raw sequence reads PRJNA758770 Whole Genome Sequencing A polyfluorinated compound H PFMO2OSA induced transcriptome alters in early zebrafish embryo         PFVE80 2.R2   strain:AB|age:120h|sex:N1|tissue:embyo|treatment:PFVE 2.2|BioSampleModel:Model organism or animal                 RNA Seq of embryo SAMN21035687 SAMN21035687 Illumina NovaSeq 6000     RNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE ILLUMINA Illumina NovaSeq 6000   SRP335145     PFVE80_2.R2.fastq.gz fastq 3643079454.0 24126354.0 PFVE80 2.R2.fastq.gz 0:0 1:151 A:970097971;C:847572569;G:875660538;T:949711134;N:37242 0 151     970097971 847572569 875660538 949711134 37242 SRX11980362 SRS9988540 SRA1287281 Chinese Academy of Sciences|Institute of Zoology Chinese Academy of Sciences 1 0.94336   0.07333   0.68105   0.4837   151   B   usable mapping rate illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-01 Larval Larval Embryo Imprecise All anatomical structures
65884 65884 SRR15684069 SRX11980361 SRS9988539 SRP335145 PRJNA758770 Danio rerio Raw sequence reads PRJNA758770 Whole Genome Sequencing A polyfluorinated compound H PFMO2OSA induced transcriptome alters in early zebrafish embryo         PFVE80 2.R1   strain:AB|age:120h|sex:N1|tissue:embyo|treatment:PFVE 2.1|BioSampleModel:Model organism or animal                 RNA Seq of embryo SAMN21035686 SAMN21035686 Illumina NovaSeq 6000     RNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE ILLUMINA Illumina NovaSeq 6000   SRP335145     PFVE80_2.R1.fastq.gz fastq 3643079454.0 24126354.0 PFVE80 2.R1.fastq.gz 0:151 1:0 A:967689988;C:854955078;G:869122952;T:951106145;N:205291 151 0     967689988 854955078 869122952 951106145 205291 SRX11980361 SRS9988539 SRA1287281 Chinese Academy of Sciences|Institute of Zoology Chinese Academy of Sciences 1 0.94505   0.07378   0.67909   0.48465   151   B   usable mapping rate illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-01 Larval Larval Embryo Imprecise All anatomical structures
65885 65885 SRR15684070 SRX11980360 SRS9988538 SRP335145 PRJNA758770 Danio rerio Raw sequence reads PRJNA758770 Whole Genome Sequencing A polyfluorinated compound H PFMO2OSA induced transcriptome alters in early zebrafish embryo         PFVE0 1.R2   strain:AB|age:120h|sex:N1|tissue:embyo|treatment:H20 1.2|BioSampleModel:Model organism or animal                 RNA Seq of embryo SAMN21035677 SAMN21035677 Illumina NovaSeq 6000     RNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE ILLUMINA Illumina NovaSeq 6000   SRP335145     PFVE0_1.R2.fastq.gz fastq 3437455053.0 22764603.0 PFVE0 1.R2.fastq.gz 0:0 1:151 A:927165985;C:787962049;G:812091935;T:910201170;N:33914 0 151     927165985 787962049 812091935 910201170 33914 SRX11980360 SRS9988538 SRA1287281 Chinese Academy of Sciences|Institute of Zoology Chinese Academy of Sciences 1 0.9386   0.08934   0.67679   0.45689   151   B   usable mapping rate illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-01 Larval Larval Embryo Imprecise All anatomical structures
65886 65886 SRR15684071 SRX11980359 SRS9988537 SRP335145 PRJNA758770 Danio rerio Raw sequence reads PRJNA758770 Whole Genome Sequencing A polyfluorinated compound H PFMO2OSA induced transcriptome alters in early zebrafish embryo         PFVE0 1.R1   strain:AB|age:120h|sex:N1|tissue:embyo|treatment:H20 1.1|BioSampleModel:Model organism or animal                 RNA Seq of embryo SAMN21035676 SAMN21035676 Illumina NovaSeq 6000     RNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE ILLUMINA Illumina NovaSeq 6000   SRP335145     PFVE0_1.R1.fastq.gz fastq 3437455053.0 22764603.0 PFVE0 1.R1.fastq.gz 0:151 1:0 A:925579878;C:793447833;G:807004079;T:911233278;N:189985 151 0     925579878 793447833 807004079 911233278 189985 SRX11980359 SRS9988537 SRA1287281 Chinese Academy of Sciences|Institute of Zoology Chinese Academy of Sciences 1 0.93961   0.08975   0.6757   0.4584   151   B   usable mapping rate illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-01 Larval Larval Embryo Imprecise All anatomical structures

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;