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24 rows where experiment.library_selection = "RANDOM PCR", experiment.platform = "ILLUMINA" and tissue_curation = "Embryo Imprecise"

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experiment.library_layout 2

tissue_curation_coarse 1

tissue_curation 1

  • Embryo Imprecise · 24 ✖

technology 1

experiment.platform 1

  • ILLUMINA · 24 ✖

experiment.library_strategy 1

experiment.library_source 1

experiment.library_selection 1

  • RANDOM PCR · 24 ✖

devstage_curation_coarse 1

devstage_curation 1

Link rowid ▼ run.accession experiment.accession sample.accession study.accession bioproject study.title study.alias study.type study.abstract study.attributes study.PMIDs sample.description sample.title sample.alias sample.centername sample.attributes GEOsample.title GEOsample.dataprocessing GEOsample.source GEOsample.treatmentprotocol GEOsample.extractprotocol GEOsample.growthprotocol GEOsample.characteristics GEOsample.accession experiment.title experiment.alias experiment.library_name experiment.design_description experiment.library_construction_protocol experiment.attributes experiment.library_strategy experiment.library_source experiment.library_selection experiment.library_layout experiment.platform experiment.instrument_model experiment.spot_descriptor experiment.study_ref run.title run.attributes run.filename run.semantic_name run.total_bases run.total_spots run.alias run.read_lengths run.base_counts run.r1_length run.r2_length run.r3_length run.r4_length run.Acount run.Ccount run.Gcount run.Tcount run.Ncount run.experiment run.pool_member submission.accession submission.srasource submission.bioprojectsource seqdetective.n_mates seqdetective.mapping_rate.mate1 seqdetective.mapping_rate.mate2 seqdetective.nofeature_rate.mate1 seqdetective.nofeature_rate.mate2 seqdetective.sparsity.mate1 seqdetective.sparsity.mate2 seqdetective.pos_strand_rate.mate1 seqdetective.pos_strand_rate.mate2 seqdetective.readlen.mate1 seqdetective.readlen.mate2 seqdetective.judgement.mate1 seqdetective.judgement.mate2 seqdetective.judgement.reason platform_family instrument_generation read_bias selection_class prep_kit sc_or_bulk tech_class technology tech_variant submission.bioprojectsource.country earliest_date devstage_curation devstage_curation_coarse tissue_curation tissue_curation_coarse
64197 64197 SRR14319883 SRX10675035 SRS8769036 SRP316198 PRJNA724884 Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and terfa compromised zebrafish embryos PRJNA724884 Other The goals of this study are to compare NGS in 3dpf zebrafish embryo post knockout terfa telomere repeats binding factor 2. In order to investigate the role of terfa in DDR telomere protection and neuro development.         yyl homo zf rep2   replicate:2|date:2/20/2021/3pm|breed:AB|age:10 day|dev stage:embryo|sex:not determined|tissue:embryo|BioSampleModel:Model organism or animal                 RNA Seq of danio rerio: 3d embryos LDA9530 LDA9530 RNA libraries were prepared for sequencing using standard Illumina protocols     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED ILLUMINA HiSeq X Ten   SRP316198     TRF2_homozygous_3d_2_LDA9530Aligned.sortedByCoord.out.bam bam 13532124350.0 45108312.0 TRF2 homozygous 3d 2 LDA9530Aligned.sortedByCoord.out.bam 0:150.00 1:150.00 A:3411777260;C:3360449196;G:3332955645;T:3425874531;N:1067718 150 150     3411777260 3360449196 3332955645 3425874531 1067718 SRX10675035 SRS8769036 SRA1223267 Ruijin hospital, Shanghai, China|Emergency Medchine Ruijin hospital, Shanghai, China 2 0.96358 0.96219 0.06413 0.06452 0.67101 0.67304 0.45519 0.45225 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2021-04-24 Larval Larval Embryo Imprecise All anatomical structures
64198 64198 SRR14319884 SRX10675034 SRS8769035 SRP316198 PRJNA724884 Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and terfa compromised zebrafish embryos PRJNA724884 Other The goals of this study are to compare NGS in 3dpf zebrafish embryo post knockout terfa telomere repeats binding factor 2. In order to investigate the role of terfa in DDR telomere protection and neuro development.         yyl homo zf rep1   replicate:1|date:2/20/2021/2pm|breed:AB|age:9 day|dev stage:embryo|sex:not determined|tissue:embryo|BioSampleModel:Model organism or animal                 RNA Seq of danio rerio: 3d embryos LDA9528 LDA9528 RNA libraries were prepared for sequencing using standard Illumina protocols     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED ILLUMINA HiSeq X Ten   SRP316198   assembly:GRCz11 TRF2_homozygous_3d_1_LDA9528Aligned.sortedByCoord.out.bam bam 14927377118.0 51943892.0 TRF2 homozygous 3d 1 LDA9528Aligned.sortedByCoord.out.bam 0:143.69 1:143.69 A:3703977593;C:3766420543;G:3739925195;T:3715825628;N:1228159 143 143     3703977593 3766420543 3739925195 3715825628 1228159 SRX10675034 SRS8769035 SRA1223267 Ruijin hospital, Shanghai, China|Emergency Medchine Ruijin hospital, Shanghai, China 2 0.96471 0.96437 0.0498 0.05004 0.66906 0.67036 0.45421 0.45111 98 98 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2021-05-17 Larval Larval Embryo Imprecise All anatomical structures
64199 64199 SRR14319885 SRX10675033 SRS8769034 SRP316198 PRJNA724884 Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and terfa compromised zebrafish embryos PRJNA724884 Other The goals of this study are to compare NGS in 3dpf zebrafish embryo post knockout terfa telomere repeats binding factor 2. In order to investigate the role of terfa in DDR telomere protection and neuro development.         yyl hybrid zf rep3   replicate:3|date:2/15/2021/12am|breed:AB|age:8 day|dev stage:embryo|sex:not determined|tissue:embryo|BioSampleModel:Model organism or animal                 RNA Seq of danio rerio: 3d embryos LDA9527 LDA9527 RNA libraries were prepared for sequencing using standard Illumina protocols     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED ILLUMINA HiSeq X Ten   SRP316198     TRF2_hybrid_3d_3_LDA9527Aligned.sortedByCoord.out.bam bam 12450675900.0 41503258.0 TRF2 hybrid 3d 3 LDA9527Aligned.sortedByCoord.out.bam 0:150.00 1:150.00 A:3154217597;C:3079057917;G:3050871836;T:3166472619;N:55931 150 150     3154217597 3079057917 3050871836 3166472619 55931 SRX10675033 SRS8769034 SRA1223267 Ruijin hospital, Shanghai, China|Emergency Medchine Ruijin hospital, Shanghai, China 2 0.97361 0.97378 0.0695 0.06953 0.65884 0.65922 0.44942 0.45124 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2021-04-24 Larval Larval Embryo Imprecise All anatomical structures
64200 64200 SRR14319886 SRX10675032 SRS8769033 SRP316198 PRJNA724884 Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and terfa compromised zebrafish embryos PRJNA724884 Other The goals of this study are to compare NGS in 3dpf zebrafish embryo post knockout terfa telomere repeats binding factor 2. In order to investigate the role of terfa in DDR telomere protection and neuro development.         yyl hybrid zf rep2   replicate:2|date:2/15/2021/11am|breed:AB|age:7 day|dev stage:embryo|sex:not determined|tissue:embryo|BioSampleModel:Model organism or animal                 RNA Seq of danio rerio: 3d embryos LDA9526 LDA9526 RNA libraries were prepared for sequencing using standard Illumina protocols     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED ILLUMINA HiSeq X Ten   SRP316198     TRF2_hybrid_3d_2_LDA9526Aligned.sortedByCoord.out.bam bam 13705312262.0 45685613.0 TRF2 hybrid 3d 2 LDA9526Aligned.sortedByCoord.out.bam 0:150.00 1:150.00 A:3456147807;C:3403904273;G:3377881707;T:3466298988;N:1079487 150 150     3456147807 3403904273 3377881707 3466298988 1079487 SRX10675032 SRS8769033 SRA1223267 Ruijin hospital, Shanghai, China|Emergency Medchine Ruijin hospital, Shanghai, China 2 0.96349 0.96378 0.06028 0.06096 0.66296 0.66655 0.46411 0.4594 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2021-04-24 Larval Larval Embryo Imprecise All anatomical structures
64201 64201 SRR14319887 SRX10675031 SRS8769032 SRP316198 PRJNA724884 Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and terfa compromised zebrafish embryos PRJNA724884 Other The goals of this study are to compare NGS in 3dpf zebrafish embryo post knockout terfa telomere repeats binding factor 2. In order to investigate the role of terfa in DDR telomere protection and neuro development.         yyl hybrid zf rep1   replicate:1|date:2/15/2021/10am|breed:AB|age:6 day|dev stage:embryo|sex:not determined|tissue:embryo|BioSampleModel:Model organism or animal                 RNA Seq of danio rerio: 3d embryos LDA9525 LDA9525 RNA libraries were prepared for sequencing using standard Illumina protocols     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED ILLUMINA HiSeq X Ten   SRP316198     TRF2_hybrid_3d_1_LDA9525Aligned.sortedByCoord.out.bam bam 14038287516.0 46795622.0 TRF2 hybrid 3d 1 LDA9525Aligned.sortedByCoord.out.bam 0:150.00 1:150.00 A:3551265371;C:3474535373;G:3450978358;T:3560404727;N:1103687 150 150     3551265371 3474535373 3450978358 3560404727 1103687 SRX10675031 SRS8769032 SRA1223267 Ruijin hospital, Shanghai, China|Emergency Medchine Ruijin hospital, Shanghai, China 2 0.96271 0.96308 0.06105 0.06177 0.66403 0.6672 0.45387 0.4559 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2021-04-24 Larval Larval Embryo Imprecise All anatomical structures
64202 64202 SRR14319888 SRX10675030 SRS8769031 SRP316198 PRJNA724884 Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and terfa compromised zebrafish embryos PRJNA724884 Other The goals of this study are to compare NGS in 3dpf zebrafish embryo post knockout terfa telomere repeats binding factor 2. In order to investigate the role of terfa in DDR telomere protection and neuro development.         yyl wt zf rep3   replicate:3|date:2/14/2021/11am|breed:AB|age:5 day|dev stage:embryo|sex:not determined|tissue:embryo|BioSampleModel:Model organism or animal                 RNA Seq of danio rerio: 3d embryos LDA9524 LDA9524 RNA libraries were prepared for sequencing using standard Illumina protocols     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED ILLUMINA HiSeq X Ten   SRP316198   assembly:GRCz11 WT_3d_3_LDA9524Aligned.sortedByCoord.out.bam bam 14859562542.0 49533110.0 WT 3d 3 LDA9524Aligned.sortedByCoord.out.bam 0:150.00 1:150.00 A:3726520603;C:3710201397;G:3682621106;T:3739080755;N:1138681 150 150     3726520603 3710201397 3682621106 3739080755 1138681 SRX10675030 SRS8769031 SRA1223267 Ruijin hospital, Shanghai, China|Emergency Medchine Ruijin hospital, Shanghai, China 2 0.96602 0.96434 0.05466 0.05515 0.66659 0.66983 0.45294 0.44988 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2021-05-17 Larval Larval Embryo Imprecise All anatomical structures
64203 64203 SRR14319889 SRX10675029 SRS8769030 SRP316198 PRJNA724884 Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and terfa compromised zebrafish embryos PRJNA724884 Other The goals of this study are to compare NGS in 3dpf zebrafish embryo post knockout terfa telomere repeats binding factor 2. In order to investigate the role of terfa in DDR telomere protection and neuro development.         yyl wt zf rep2   replicate:2|date:2/14/2021/10am|breed:AB|age:4 day|dev stage:embryo|sex:not determined|tissue:embryo|BioSampleModel:Model organism or animal                 RNA Seq of danio rerio: 3d embryos LDA9523 LDA9523 RNA libraries were prepared for sequencing using standard Illumina protocols     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED ILLUMINA HiSeq X Ten   SRP316198     WT_3d_2_LDA9523Aligned.sortedByCoord.out.bam bam 14514400332.0 48381654.0 WT 3d 2 LDA9523Aligned.sortedByCoord.out.bam 0:150.00 1:150.00 A:3705089802;C:3553212549;G:3520322215;T:3734808448;N:967318 150 150     3705089802 3553212549 3520322215 3734808448 967318 SRX10675029 SRS8769030 SRA1223267 Ruijin hospital, Shanghai, China|Emergency Medchine Ruijin hospital, Shanghai, China 2 0.96308 0.96421 0.07369 0.0744 0.6552 0.65888 0.46075 0.45705 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2021-04-24 Larval Larval Embryo Imprecise All anatomical structures
64204 64204 SRR14319890 SRX10675028 SRS8769029 SRP316198 PRJNA724884 Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and terfa compromised zebrafish embryos PRJNA724884 Other The goals of this study are to compare NGS in 3dpf zebrafish embryo post knockout terfa telomere repeats binding factor 2. In order to investigate the role of terfa in DDR telomere protection and neuro development.         yyl wt zf rep1   replicate:1|date:2/14/2021/9am|breed:AB|age:3 day|dev stage:embryo|sex:not determined|tissue:embryo|BioSampleModel:Model organism or animal                 RNA Seq of danio rerio: 3d embryos LDA9522 LDA9522 RNA libraries were prepared for sequencing using standard Illumina protocols     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED ILLUMINA HiSeq X Ten   SRP316198     WT_3d_1_LDA9522Aligned.sortedByCoord.out.bam bam 18010289414.0 60034644.0 WT 3d 1 LDA9522Aligned.sortedByCoord.out.bam 0:150.00 1:150.00 A:4584048700;C:4421083340;G:4382775986;T:4621251990;N:1129398 150 150     4584048700 4421083340 4382775986 4621251990 1129398 SRX10675028 SRS8769029 SRA1223267 Ruijin hospital, Shanghai, China|Emergency Medchine Ruijin hospital, Shanghai, China 2 0.96428 0.96501 0.06803 0.06875 0.65458 0.65837 0.46378 0.45821 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2021-04-29 Larval Larval Embryo Imprecise All anatomical structures
65871 65871 SRR15684056 SRX11980374 SRS9988552 SRP335145 PRJNA758770 Danio rerio Raw sequence reads PRJNA758770 Whole Genome Sequencing A polyfluorinated compound H PFMO2OSA induced transcriptome alters in early zebrafish embryo         PFVE80 1.R2   strain:AB|age:120h|sex:N1|tissue:embyo|treatment:PFVE 1.2|BioSampleModel:Model organism or animal                 RNA Seq of embryo SAMN21035685 SAMN21035685 Illumina NovaSeq 6000     RNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE ILLUMINA Illumina NovaSeq 6000   SRP335145     PFVE80_1.R2.fastq.gz fastq 3296094440.0 21828440.0 PFVE80 1.R2.fastq.gz 0:0 1:151 A:915433386;C:730204213;G:755908505;T:894514826;N:33510 0 151     915433386 730204213 755908505 894514826 33510 SRX11980374 SRS9988552 SRA1287281 Chinese Academy of Sciences|Institute of Zoology Chinese Academy of Sciences 1 0.93185   0.1143   0.69244   0.47999   151   B   usable mapping rate illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-01 Larval Larval Embryo Imprecise All anatomical structures
65872 65872 SRR15684057 SRX11980373 SRS9988551 SRP335145 PRJNA758770 Danio rerio Raw sequence reads PRJNA758770 Whole Genome Sequencing A polyfluorinated compound H PFMO2OSA induced transcriptome alters in early zebrafish embryo         PFVE80 1.R1   strain:AB|age:120h|sex:N1|tissue:embyo|treatment:PFVE 1.1|BioSampleModel:Model organism or animal                 RNA Seq of embryo SAMN21035684 SAMN21035684 Illumina NovaSeq 6000     RNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE ILLUMINA Illumina NovaSeq 6000   SRP335145     PFVE80_1.R1.fastq.gz fastq 3296094440.0 21828440.0 PFVE80 1.R1.fastq.gz 0:151 1:0 A:912467078;C:735556764;G:752785505;T:895102572;N:182521 151 0     912467078 735556764 752785505 895102572 182521 SRX11980373 SRS9988551 SRA1287281 Chinese Academy of Sciences|Institute of Zoology Chinese Academy of Sciences 1 0.93451   0.11559   0.69063   0.48574   151   B   usable mapping rate illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-01 Larval Larval Embryo Imprecise All anatomical structures
65873 65873 SRR15684058 SRX11980372 SRS9988550 SRP335145 PRJNA758770 Danio rerio Raw sequence reads PRJNA758770 Whole Genome Sequencing A polyfluorinated compound H PFMO2OSA induced transcriptome alters in early zebrafish embryo         PFVE0 4.R2   strain:AB|age:120h|sex:N1|tissue:embyo|treatment:H20 4.2|BioSampleModel:Model organism or animal                 RNA Seq of embryo SAMN21035683 SAMN21035683 Illumina NovaSeq 6000     RNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE ILLUMINA Illumina NovaSeq 6000   SRP335145     PFVE0_4.R2.fastq.gz fastq 3759908003.0 24900053.0 PFVE0 4.R2.fastq.gz 0:0 1:151 A:1000945494;C:875720109;G:898795328;T:984408950;N:38122 0 151     1000945494 875720109 898795328 984408950 38122 SRX11980372 SRS9988550 SRA1287281 Chinese Academy of Sciences|Institute of Zoology Chinese Academy of Sciences 1 0.9408   0.0837   0.67584   0.46787   151   B   usable mapping rate illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-01 Larval Larval Embryo Imprecise All anatomical structures
65874 65874 SRR15684059 SRX11980371 SRS9988549 SRP335145 PRJNA758770 Danio rerio Raw sequence reads PRJNA758770 Whole Genome Sequencing A polyfluorinated compound H PFMO2OSA induced transcriptome alters in early zebrafish embryo         PFVE0 4.R1   strain:AB|age:120h|sex:N1|tissue:embyo|treatment:H20 4.1|BioSampleModel:Model organism or animal                 RNA Seq of embryo SAMN21035682 SAMN21035682 Illumina NovaSeq 6000     RNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE ILLUMINA Illumina NovaSeq 6000   SRP335145     PFVE0_4.R1.fastq.gz fastq 3759908003.0 24900053.0 PFVE0 4.R1.fastq.gz 0:151 1:0 A:998344987;C:880686863;G:894577099;T:986091832;N:207222 151 0     998344987 880686863 894577099 986091832 207222 SRX11980371 SRS9988549 SRA1287281 Chinese Academy of Sciences|Institute of Zoology Chinese Academy of Sciences 1 0.94175   0.08443   0.67334   0.46255   151   B   usable mapping rate illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-01 Larval Larval Embryo Imprecise All anatomical structures
65875 65875 SRR15684060 SRX11980370 SRS9988548 SRP335145 PRJNA758770 Danio rerio Raw sequence reads PRJNA758770 Whole Genome Sequencing A polyfluorinated compound H PFMO2OSA induced transcriptome alters in early zebrafish embryo         PFVE0 3.R2   strain:AB|age:120h|sex:N1|tissue:embyo|treatment:H20 3.2|BioSampleModel:Model organism or animal                 RNA Seq of embryo SAMN21035681 SAMN21035681 Illumina NovaSeq 6000     RNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE ILLUMINA Illumina NovaSeq 6000   SRP335145     PFVE0_3.R2.fastq.gz fastq 4110903728.0 27224528.0 PFVE0 3.R2.fastq.gz 0:0 1:151 A:1107531796;C:945271780;G:971476953;T:1086581356;N:41843 0 151     1107531796 945271780 971476953 1086581356 41843 SRX11980370 SRS9988548 SRA1287281 Chinese Academy of Sciences|Institute of Zoology Chinese Academy of Sciences 1 0.94068   0.08433   0.67243   0.45982   151   B   usable mapping rate illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-01 Larval Larval Embryo Imprecise All anatomical structures
65876 65876 SRR15684061 SRX11980369 SRS9988547 SRP335145 PRJNA758770 Danio rerio Raw sequence reads PRJNA758770 Whole Genome Sequencing A polyfluorinated compound H PFMO2OSA induced transcriptome alters in early zebrafish embryo         PFVE0 3.R1   strain:AB|age:120h|sex:N1|tissue:embyo|treatment:H2O 3.1|BioSampleModel:Model organism or animal                 RNA Seq of embryo SAMN21035680 SAMN21035680 Illumina NovaSeq 6000     RNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE ILLUMINA Illumina NovaSeq 6000   SRP335145     PFVE0_3.R1.fastq.gz fastq 4110903728.0 27224528.0 PFVE0 3.R1.fastq.gz 0:151 1:0 A:1103234050;C:949977333;G:968068226;T:1089400056;N:224063 151 0     1103234050 949977333 968068226 1089400056 224063 SRX11980369 SRS9988547 SRA1287281 Chinese Academy of Sciences|Institute of Zoology Chinese Academy of Sciences 1 0.94257   0.08462   0.66969   0.46513   151   B   usable mapping rate illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-01 Larval Larval Embryo Imprecise All anatomical structures
65877 65877 SRR15684062 SRX11980368 SRS9988546 SRP335145 PRJNA758770 Danio rerio Raw sequence reads PRJNA758770 Whole Genome Sequencing A polyfluorinated compound H PFMO2OSA induced transcriptome alters in early zebrafish embryo         PFVE0 2.R2   strain:AB|age:120h|sex:N1|tissue:embyo|treatment:H20 2.2|BioSampleModel:Model organism or animal                 RNA Seq of embryo SAMN21035679 SAMN21035679 Illumina NovaSeq 6000     RNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE ILLUMINA Illumina NovaSeq 6000   SRP335145     PFVE0_2.R2.fastq.gz fastq 3303194158.0 21875458.0 PFVE0 2.R2.fastq.gz 0:0 1:151 A:882380354;C:765252922;G:789054306;T:866472679;N:33897 0 151     882380354 765252922 789054306 866472679 33897 SRX11980368 SRS9988546 SRA1287281 Chinese Academy of Sciences|Institute of Zoology Chinese Academy of Sciences 1 0.9451   0.07962   0.68034   0.46622   151   B   usable mapping rate illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-01 Larval Larval Embryo Imprecise All anatomical structures
65878 65878 SRR15684063 SRX11980367 SRS9988545 SRP335145 PRJNA758770 Danio rerio Raw sequence reads PRJNA758770 Whole Genome Sequencing A polyfluorinated compound H PFMO2OSA induced transcriptome alters in early zebrafish embryo         PFVE0 2.R1   strain:AB|age:120h|sex:N1|tissue:embyo|treatment:H20 2.1|BioSampleModel:Model organism or animal                 RNA Seq of embryo SAMN21035678 SAMN21035678 Illumina NovaSeq 6000     RNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE ILLUMINA Illumina NovaSeq 6000   SRP335145     PFVE0_2.R1.fastq.gz fastq 3303194158.0 21875458.0 PFVE0 2.R1.fastq.gz 0:151 1:0 A:880833177;C:770677822;G:784641418;T:866859145;N:182596 151 0     880833177 770677822 784641418 866859145 182596 SRX11980367 SRS9988545 SRA1287281 Chinese Academy of Sciences|Institute of Zoology Chinese Academy of Sciences 1 0.94592   0.07933   0.67939   0.46558   151   B   usable mapping rate illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-01 Larval Larval Embryo Imprecise All anatomical structures
65879 65879 SRR15684064 SRX11980366 SRS9988544 SRP335145 PRJNA758770 Danio rerio Raw sequence reads PRJNA758770 Whole Genome Sequencing A polyfluorinated compound H PFMO2OSA induced transcriptome alters in early zebrafish embryo         PFVE80 4.R2   strain:AB|age:120h|sex:N1|tissue:embyo|treatment:PFVE 4.2|BioSampleModel:Model organism or animal                 RNA Seq of embryo SAMN21035691 SAMN21035691 Illumina NovaSeq 6000     RNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE ILLUMINA Illumina NovaSeq 6000   SRP335145     PFVE80_4.R2.fastq.gz fastq 3525791110.0 23349610.0 PFVE80 4.R2.fastq.gz 0:0 1:151 A:962908653;C:796116922;G:823506287;T:943223019;N:36229 0 151     962908653 796116922 823506287 943223019 36229 SRX11980366 SRS9988544 SRA1287281 Chinese Academy of Sciences|Institute of Zoology Chinese Academy of Sciences 1 0.93487   0.10192   0.68193   0.48466   151   B   usable mapping rate illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-01 Larval Larval Embryo Imprecise All anatomical structures
65880 65880 SRR15684065 SRX11980365 SRS9988543 SRP335145 PRJNA758770 Danio rerio Raw sequence reads PRJNA758770 Whole Genome Sequencing A polyfluorinated compound H PFMO2OSA induced transcriptome alters in early zebrafish embryo         PFVE80 4.R1   strain:AB|age:120h|sex:N1|tissue:embyo|treatment:PFVE 4.1|BioSampleModel:Model organism or animal                 RNA Seq of embryo SAMN21035690 SAMN21035690 Illumina NovaSeq 6000     RNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE ILLUMINA Illumina NovaSeq 6000   SRP335145     PFVE80_4.R1.fastq.gz fastq 3525791110.0 23349610.0 PFVE80 4.R1.fastq.gz 0:151 1:0 A:961509026;C:801265885;G:818953915;T:943866829;N:195455 151 0     961509026 801265885 818953915 943866829 195455 SRX11980365 SRS9988543 SRA1287281 Chinese Academy of Sciences|Institute of Zoology Chinese Academy of Sciences 1 0.93687   0.1026   0.67978   0.48493   151   B   usable mapping rate illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-01 Larval Larval Embryo Imprecise All anatomical structures
65881 65881 SRR15684066 SRX11980364 SRS9988542 SRP335145 PRJNA758770 Danio rerio Raw sequence reads PRJNA758770 Whole Genome Sequencing A polyfluorinated compound H PFMO2OSA induced transcriptome alters in early zebrafish embryo         PFVE80 3.R2   strain:AB|age:120h|sex:N1|tissue:embyo|treatment:PFVE 3.2|BioSampleModel:Model organism or animal                 RNA Seq of embryo SAMN21035689 SAMN21035689 Illumina NovaSeq 6000     RNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE ILLUMINA Illumina NovaSeq 6000   SRP335145     PFVE80_3.R2.fastq.gz fastq 3894722615.0 25792865.0 PFVE80 3.R2.fastq.gz 0:0 1:151 A:1061897475;C:882432313;G:910119669;T:1040233778;N:39380 0 151     1061897475 882432313 910119669 1040233778 39380 SRX11980364 SRS9988542 SRA1287281 Chinese Academy of Sciences|Institute of Zoology Chinese Academy of Sciences 1 0.92449   0.09119   0.68256   0.47211   151   B   usable mapping rate illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-01 Larval Larval Embryo Imprecise All anatomical structures
65882 65882 SRR15684067 SRX11980363 SRS9988541 SRP335145 PRJNA758770 Danio rerio Raw sequence reads PRJNA758770 Whole Genome Sequencing A polyfluorinated compound H PFMO2OSA induced transcriptome alters in early zebrafish embryo         PFVE80 3.R1   strain:AB|age:120h|sex:N1|tissue:embyo|treatment:PFVE 3.1|BioSampleModel:Model organism or animal                 RNA Seq of embryo SAMN21035688 SAMN21035688 Illumina NovaSeq 6000     RNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE ILLUMINA Illumina NovaSeq 6000   SRP335145     PFVE80_3.R1.fastq.gz fastq 3894722615.0 25792865.0 PFVE80 3.R1.fastq.gz 0:151 1:0 A:1058737478;C:888069233;G:906287035;T:1041414732;N:214137 151 0     1058737478 888069233 906287035 1041414732 214137 SRX11980363 SRS9988541 SRA1287281 Chinese Academy of Sciences|Institute of Zoology Chinese Academy of Sciences 1 0.92619   0.09159   0.68219   0.47411   151   B   usable mapping rate illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-01 Larval Larval Embryo Imprecise All anatomical structures
65883 65883 SRR15684068 SRX11980362 SRS9988540 SRP335145 PRJNA758770 Danio rerio Raw sequence reads PRJNA758770 Whole Genome Sequencing A polyfluorinated compound H PFMO2OSA induced transcriptome alters in early zebrafish embryo         PFVE80 2.R2   strain:AB|age:120h|sex:N1|tissue:embyo|treatment:PFVE 2.2|BioSampleModel:Model organism or animal                 RNA Seq of embryo SAMN21035687 SAMN21035687 Illumina NovaSeq 6000     RNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE ILLUMINA Illumina NovaSeq 6000   SRP335145     PFVE80_2.R2.fastq.gz fastq 3643079454.0 24126354.0 PFVE80 2.R2.fastq.gz 0:0 1:151 A:970097971;C:847572569;G:875660538;T:949711134;N:37242 0 151     970097971 847572569 875660538 949711134 37242 SRX11980362 SRS9988540 SRA1287281 Chinese Academy of Sciences|Institute of Zoology Chinese Academy of Sciences 1 0.94336   0.07333   0.68105   0.4837   151   B   usable mapping rate illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-01 Larval Larval Embryo Imprecise All anatomical structures
65884 65884 SRR15684069 SRX11980361 SRS9988539 SRP335145 PRJNA758770 Danio rerio Raw sequence reads PRJNA758770 Whole Genome Sequencing A polyfluorinated compound H PFMO2OSA induced transcriptome alters in early zebrafish embryo         PFVE80 2.R1   strain:AB|age:120h|sex:N1|tissue:embyo|treatment:PFVE 2.1|BioSampleModel:Model organism or animal                 RNA Seq of embryo SAMN21035686 SAMN21035686 Illumina NovaSeq 6000     RNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE ILLUMINA Illumina NovaSeq 6000   SRP335145     PFVE80_2.R1.fastq.gz fastq 3643079454.0 24126354.0 PFVE80 2.R1.fastq.gz 0:151 1:0 A:967689988;C:854955078;G:869122952;T:951106145;N:205291 151 0     967689988 854955078 869122952 951106145 205291 SRX11980361 SRS9988539 SRA1287281 Chinese Academy of Sciences|Institute of Zoology Chinese Academy of Sciences 1 0.94505   0.07378   0.67909   0.48465   151   B   usable mapping rate illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-01 Larval Larval Embryo Imprecise All anatomical structures
65885 65885 SRR15684070 SRX11980360 SRS9988538 SRP335145 PRJNA758770 Danio rerio Raw sequence reads PRJNA758770 Whole Genome Sequencing A polyfluorinated compound H PFMO2OSA induced transcriptome alters in early zebrafish embryo         PFVE0 1.R2   strain:AB|age:120h|sex:N1|tissue:embyo|treatment:H20 1.2|BioSampleModel:Model organism or animal                 RNA Seq of embryo SAMN21035677 SAMN21035677 Illumina NovaSeq 6000     RNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE ILLUMINA Illumina NovaSeq 6000   SRP335145     PFVE0_1.R2.fastq.gz fastq 3437455053.0 22764603.0 PFVE0 1.R2.fastq.gz 0:0 1:151 A:927165985;C:787962049;G:812091935;T:910201170;N:33914 0 151     927165985 787962049 812091935 910201170 33914 SRX11980360 SRS9988538 SRA1287281 Chinese Academy of Sciences|Institute of Zoology Chinese Academy of Sciences 1 0.9386   0.08934   0.67679   0.45689   151   B   usable mapping rate illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-01 Larval Larval Embryo Imprecise All anatomical structures
65886 65886 SRR15684071 SRX11980359 SRS9988537 SRP335145 PRJNA758770 Danio rerio Raw sequence reads PRJNA758770 Whole Genome Sequencing A polyfluorinated compound H PFMO2OSA induced transcriptome alters in early zebrafish embryo         PFVE0 1.R1   strain:AB|age:120h|sex:N1|tissue:embyo|treatment:H20 1.1|BioSampleModel:Model organism or animal                 RNA Seq of embryo SAMN21035676 SAMN21035676 Illumina NovaSeq 6000     RNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE ILLUMINA Illumina NovaSeq 6000   SRP335145     PFVE0_1.R1.fastq.gz fastq 3437455053.0 22764603.0 PFVE0 1.R1.fastq.gz 0:151 1:0 A:925579878;C:793447833;G:807004079;T:911233278;N:189985 151 0     925579878 793447833 807004079 911233278 189985 SRX11980359 SRS9988537 SRA1287281 Chinese Academy of Sciences|Institute of Zoology Chinese Academy of Sciences 1 0.93961   0.08975   0.6757   0.4584   151   B   usable mapping rate illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-01 Larval Larval Embryo Imprecise All anatomical structures

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;