metadata: run_metadata: 37 rows where experiment.library_selection = "RANDOM PCR", experiment.library_strategy = "RNA-Seq" and tissue_curation

37 rows where experiment.library_selection = "RANDOM PCR", experiment.library_strategy = "RNA-Seq" and tissue_curation_coarse = "Reproductive System"

descending

Link	rowid ▼	run.accession	experiment.accession	sample.accession	study.accession	bioproject	study.title	study.alias	study.type	study.abstract	sample.description	sample.title	sample.alias	sample.attributes	experiment.title	experiment.alias	experiment.library_name	experiment.design_description	experiment.library_strategy	experiment.library_source	experiment.library_selection	experiment.library_layout	experiment.platform	experiment.instrument_model	experiment.study_ref	run.filename	run.semantic_name	run.total_bases	run.total_spots	run.alias	run.read_lengths	run.base_counts	run.r1_length	run.r2_length	run.Acount	run.Ccount	run.Gcount	run.Tcount	run.Ncount	run.experiment	run.pool_member	submission.accession	submission.srasource	submission.bioprojectsource	seqdetective.n_mates	seqdetective.mapping_rate.mate1	seqdetective.mapping_rate.mate2	seqdetective.nofeature_rate.mate1	seqdetective.nofeature_rate.mate2	seqdetective.sparsity.mate1	seqdetective.sparsity.mate2	seqdetective.pos_strand_rate.mate1	seqdetective.pos_strand_rate.mate2	seqdetective.readlen.mate1	seqdetective.readlen.mate2	seqdetective.judgement.mate1	seqdetective.judgement.mate2	seqdetective.judgement.reason	platform_family	instrument_generation	read_bias	selection_class	prep_kit	sc_or_bulk	tech_class	technology	submission.bioprojectsource.country	earliest_date	devstage_curation	devstage_curation_coarse	tissue_curation	tissue_curation_coarse
49742	49742	SRR8197481	SRX5016863	SRS4049994	SRP169068	PRJNA495892	Danio rerio Genome sequencing	PRJNA495892	Whole Genome Sequencing	Transcriptome data of zebrafish in two stages of unfertilized egg and prim 5.	three samples of zebrafish unfertilized eggs and three samples zebrafish fries at the stage of prim5.	Model organism or animal sample from Danio rerio	The transcriptome data of zebrafish in two stages of unfertilized egg and prim 5.	isolate:zebrafish unfertilized eggs and zebrafish fries at the prim5 stage\|dev stage:2 stages of unfertilized egg and prim 5\|sex:pooled male and female\|tissue:zebrafish in 2 stages of unfertilized egg and prim 5\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: prim5 stage	Z2 3 F	Z2 3 F	The unfertilized eggs of zebrafish were taken as three samples Z1 1 Z1 2 and Z1 3 respectively. And the fries of zebrafish were taken as three samples Z2 1 Z2 2 and Z2 3 in the prim5 stage.	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina HiSeq 2500	SRP169068	Z2_3_1.fq.gz Z2_3_2.fq.gz	fastq fastq	6979181500.0	27916726.0	Z2 3 1.fq.gz	0:125 1:125	A:1822429760;C:1670132153;G:1694226275;T:1791552753;N:840559	125	125	1822429760	1670132153	1694226275	1791552753	840559	SRX5016863	SRS4049994	SRA810793	Institute of Hydrobiology, Chinese Academy of Sciences\|State Key Laboratory of Freshwater Ecology and Bio	Institute of Hydrobiology, Chinese Academy of Sciences	2	0.9586	0.9518	0.02217	0.02129	0.81022	0.80921	0.50342	0.51319	125	125	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2018-11-16	Multi-stage	Embryo	Oocyte	Reproductive System
49743	49743	SRR8197482	SRX5016862	SRS4049994	SRP169068	PRJNA495892	Danio rerio Genome sequencing	PRJNA495892	Whole Genome Sequencing	Transcriptome data of zebrafish in two stages of unfertilized egg and prim 5.	three samples of zebrafish unfertilized eggs and three samples zebrafish fries at the stage of prim5.	Model organism or animal sample from Danio rerio	The transcriptome data of zebrafish in two stages of unfertilized egg and prim 5.	isolate:zebrafish unfertilized eggs and zebrafish fries at the prim5 stage\|dev stage:2 stages of unfertilized egg and prim 5\|sex:pooled male and female\|tissue:zebrafish in 2 stages of unfertilized egg and prim 5\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: prim5 stage	Z2 1 F	Z2 1 F	The unfertilized eggs of zebrafish were taken as three samples Z1 1 Z1 2 and Z1 3 respectively. And the fries of zebrafish were taken as three samples Z2 1 Z2 2 and Z2 3 in the prim5 stage.	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina HiSeq 2500	SRP169068	Z2_1_2.fq.gz Z2_1_1.fq.gz	fastq fastq	6728695750.0	26914783.0	Z2 1 1.fq.gz	0:125 1:125	A:1732100690;C:1624557456;G:1649046037;T:1722193010;N:798557	125	125	1732100690	1624557456	1649046037	1722193010	798557	SRX5016862	SRS4049994	SRA810793	Institute of Hydrobiology, Chinese Academy of Sciences\|State Key Laboratory of Freshwater Ecology and Bio	Institute of Hydrobiology, Chinese Academy of Sciences	2	0.9585	0.95335	0.01902	0.01833	0.8131	0.81014	0.48431	0.493	125	125	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2018-11-16	Multi-stage	Embryo	Oocyte	Reproductive System
49744	49744	SRR8197483	SRX5016861	SRS4049994	SRP169068	PRJNA495892	Danio rerio Genome sequencing	PRJNA495892	Whole Genome Sequencing	Transcriptome data of zebrafish in two stages of unfertilized egg and prim 5.	three samples of zebrafish unfertilized eggs and three samples zebrafish fries at the stage of prim5.	Model organism or animal sample from Danio rerio	The transcriptome data of zebrafish in two stages of unfertilized egg and prim 5.	isolate:zebrafish unfertilized eggs and zebrafish fries at the prim5 stage\|dev stage:2 stages of unfertilized egg and prim 5\|sex:pooled male and female\|tissue:zebrafish in 2 stages of unfertilized egg and prim 5\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: unfertilized egg	Z1 3 F	Z1 3 F	The unfertilized eggs of zebrafish were taken as three samples Z1 1 Z1 2 and Z1 3 respectively. And the fries of zebrafish were taken as three samples Z2 1 Z2 2 and Z2 3 in the prim5 stage.	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina HiSeq 2500	SRP169068	Z1_3_1.fq.gz Z1_3_2.fq.gz	fastq fastq	6657035500.0	26628142.0	Z1 3 1.fq.gz	0:125 1:125	A:1796541492;C:1535300915;G:1557971133;T:1766443902;N:778058	125	125	1796541492	1535300915	1557971133	1766443902	778058	SRX5016861	SRS4049994	SRA810793	Institute of Hydrobiology, Chinese Academy of Sciences\|State Key Laboratory of Freshwater Ecology and Bio	Institute of Hydrobiology, Chinese Academy of Sciences	2	0.95543	0.94989	0.02312	0.02201	0.79689	0.79421	0.51212	0.51203	125	125	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2018-11-16	Multi-stage	Embryo	Oocyte	Reproductive System
49745	49745	SRR8197484	SRX5016860	SRS4049994	SRP169068	PRJNA495892	Danio rerio Genome sequencing	PRJNA495892	Whole Genome Sequencing	Transcriptome data of zebrafish in two stages of unfertilized egg and prim 5.	three samples of zebrafish unfertilized eggs and three samples zebrafish fries at the stage of prim5.	Model organism or animal sample from Danio rerio	The transcriptome data of zebrafish in two stages of unfertilized egg and prim 5.	isolate:zebrafish unfertilized eggs and zebrafish fries at the prim5 stage\|dev stage:2 stages of unfertilized egg and prim 5\|sex:pooled male and female\|tissue:zebrafish in 2 stages of unfertilized egg and prim 5\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: unfertilized egg	Z1 2 F	Z1 2 F	The unfertilized eggs of zebrafish were taken as three samples Z1 1 Z1 2 and Z1 3 respectively. And the fries of zebrafish were taken as three samples Z2 1 Z2 2 and Z2 3 in the prim5 stage.	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina HiSeq 2500	SRP169068	Z1_2_1.fq.gz Z1_2_2.fq.gz	fastq fastq	8869328500.0	35477314.0	Z1 2 1.fq.gz	0:125 1:125	A:2367358711;C:2085652811;G:2116692954;T:2298597848;N:1026176	125	125	2367358711	2085652811	2116692954	2298597848	1026176	SRX5016860	SRS4049994	SRA810793	Institute of Hydrobiology, Chinese Academy of Sciences\|State Key Laboratory of Freshwater Ecology and Bio	Institute of Hydrobiology, Chinese Academy of Sciences	2	0.95776	0.95084	0.01896	0.01811	0.79823	0.79608	0.49565	0.49345	125	125	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2018-11-18	Multi-stage	Embryo	Oocyte	Reproductive System
49746	49746	SRR8197485	SRX5016859	SRS4049994	SRP169068	PRJNA495892	Danio rerio Genome sequencing	PRJNA495892	Whole Genome Sequencing	Transcriptome data of zebrafish in two stages of unfertilized egg and prim 5.	three samples of zebrafish unfertilized eggs and three samples zebrafish fries at the stage of prim5.	Model organism or animal sample from Danio rerio	The transcriptome data of zebrafish in two stages of unfertilized egg and prim 5.	isolate:zebrafish unfertilized eggs and zebrafish fries at the prim5 stage\|dev stage:2 stages of unfertilized egg and prim 5\|sex:pooled male and female\|tissue:zebrafish in 2 stages of unfertilized egg and prim 5\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: unfertilized egg	Z1 1 F	Z1 1 F	The unfertilized eggs of zebrafish were taken as three samples Z1 1 Z1 2 and Z1 3 respectively. And the fries of zebrafish were taken as three samples Z2 1 Z2 2 and Z2 3 in the prim5 stage.	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina HiSeq 2500	SRP169068	Z1_1_1.fq.gz Z1_1_2.fq.gz	fastq fastq	7205390500.0	28821562.0	Z1 1 1.fq.gz	0:125 1:125	A:1900562357;C:1700185416;G:1728383049;T:1875415232;N:844446	125	125	1900562357	1700185416	1728383049	1875415232	844446	SRX5016859	SRS4049994	SRA810793	Institute of Hydrobiology, Chinese Academy of Sciences\|State Key Laboratory of Freshwater Ecology and Bio	Institute of Hydrobiology, Chinese Academy of Sciences	2	0.95593	0.95003	0.01844	0.01778	0.80064	0.80008	0.4858	0.48331	125	125	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2018-11-18	Multi-stage	Embryo	Oocyte	Reproductive System
49747	49747	SRR8197486	SRX5016858	SRS4049994	SRP169068	PRJNA495892	Danio rerio Genome sequencing	PRJNA495892	Whole Genome Sequencing	Transcriptome data of zebrafish in two stages of unfertilized egg and prim 5.	three samples of zebrafish unfertilized eggs and three samples zebrafish fries at the stage of prim5.	Model organism or animal sample from Danio rerio	The transcriptome data of zebrafish in two stages of unfertilized egg and prim 5.	isolate:zebrafish unfertilized eggs and zebrafish fries at the prim5 stage\|dev stage:2 stages of unfertilized egg and prim 5\|sex:pooled male and female\|tissue:zebrafish in 2 stages of unfertilized egg and prim 5\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: prim5 stage	Z2 2 F	Z2 2 F	The unfertilized eggs of zebrafish were taken as three samples Z1 1 Z1 2 and Z1 3 respectively. And the fries of zebrafish were taken as three samples Z2 1 Z2 2 and Z2 3 in the prim5 stage.	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina HiSeq 2500	SRP169068	Z2_2_2.fq.gz Z2_2_1.fq.gz	fastq fastq	7724266250.0	30897065.0	Z2 2 1.fq.gz	0:125 1:125	A:1986625683;C:1864133349;G:1894026843;T:1978566785;N:913590	125	125	1986625683	1864133349	1894026843	1978566785	913590	SRX5016858	SRS4049994	SRA810793	Institute of Hydrobiology, Chinese Academy of Sciences\|State Key Laboratory of Freshwater Ecology and Bio	Institute of Hydrobiology, Chinese Academy of Sciences	2	0.95577	0.94831	0.01968	0.01899	0.80793	0.80667	0.48789	0.48551	125	125	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2018-11-16	Multi-stage	Embryo	Oocyte	Reproductive System
50511	50511	SRR8293425	SRX5108028	SRS4117494	SRP172911	PRJNA498365	Raw sequence reads in the unfertilized eggs of zebrafish Danio rerio	PRJNA498365	Other	Raw sequence reads of full length transcriptome sequencing in the unfertilized eggs of zebrafish Danio rerio.	Three female zebrafish were selected and 100 unfertilized eggs from each female were harvested as three samples Z1 1 Z1 2 and Z1 3 respectively; Identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.	Model organism or animal sample from Danio rerio	unfertilized eggs from three female zebrafish were harvested as samples Z1 M	isolate:3 female zebrafish were selected and 100 unfertilized eggs from each female were harvested as 3 samples Z1 1 Z1 2 and Z1 3 respectively; and identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.\|dev stage:unfertilized egg\|sex:female\|tissue:ovary\|BioSampleModel:Model organism or animal	Full length transcriptome sequencing of zebrafish Danio rerio : adult female unfertilized eggs.	2 3K D03 1	2 3K D03 1	RNA sample Z1 M was reverse transcribed into cDNA. Four fragment ranges 0.5 1K 1 2K 2 3K and >3K were prepared according to the PacBio Iso Seq protocol. PacBio RS II sequencing reactions of 16 SMRT single molecule real time cells 3 cells of 0.5 1K 5 cells of 1 2K 5 cells of 2 3K 3 cells of >3K were performed in DNA Sequencing Reagent 4.0 Clontech Mountain View California USA.	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	SINGLE	PACBIO_SMRT	PacBio RS II	SRP172911	m160828_125709_42199_c101055502550000001823247601061763_s1_p0.1.bax.h5 m160828_125709_42199_c101055502550000001823247601061763_s1_p0.2.bax.h5 m160828_125709_42199_c101055502550000001823247601061763_s1_p0.3.bax.h5 m160828_125709_42199_c101055502550000001823247601061763_s1_p0.bas.h5	pacbio_native pacbio_native pacbio_native pacbio_native	3189114337.0	163482.0	2 3K D03 1.tar.gz		A:1019691460;C:775938787;G:628460211;T:736274173;N:0			1019691460	775938787	628460211	736274173	0	SRX5108028	SRS4117494	SRA820074	Institute of Hydrobiology, Chinese Academy of Sciences\|State Key Laboratory of Freshwater Ecology and Bio	Institute of Hydrobiology, Chinese Academy of Sciences															pacbio	pacbio_early	full_length	random_priming	unknown	bulk	unknown	unknown	China	2018-12-10	Zygote	Embryo	Gonad	Reproductive System
50512	50512	SRR8293426	SRX5108027	SRS4117494	SRP172911	PRJNA498365	Raw sequence reads in the unfertilized eggs of zebrafish Danio rerio	PRJNA498365	Other	Raw sequence reads of full length transcriptome sequencing in the unfertilized eggs of zebrafish Danio rerio.	Three female zebrafish were selected and 100 unfertilized eggs from each female were harvested as three samples Z1 1 Z1 2 and Z1 3 respectively; Identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.	Model organism or animal sample from Danio rerio	unfertilized eggs from three female zebrafish were harvested as samples Z1 M	isolate:3 female zebrafish were selected and 100 unfertilized eggs from each female were harvested as 3 samples Z1 1 Z1 2 and Z1 3 respectively; and identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.\|dev stage:unfertilized egg\|sex:female\|tissue:ovary\|BioSampleModel:Model organism or animal	Full length transcriptome sequencing of zebrafish Danio rerio : adult female unfertilized eggs.	2 3K E03 1	2 3K E03 1	RNA sample Z1 M was reverse transcribed into cDNA. Four fragment ranges 0.5 1K 1 2K 2 3K and >3K were prepared according to the PacBio Iso Seq protocol. PacBio RS II sequencing reactions of 16 SMRT single molecule real time cells 3 cells of 0.5 1K 5 cells of 1 2K 5 cells of 2 3K 3 cells of >3K were performed in DNA Sequencing Reagent 4.0 Clontech Mountain View California USA.	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	SINGLE	PACBIO_SMRT	PacBio RS II	SRP172911	m160828_171546_42199_c101055502550000001823247601061764_s1_p0.1.bax.h5 m160828_171546_42199_c101055502550000001823247601061764_s1_p0.2.bax.h5 m160828_171546_42199_c101055502550000001823247601061764_s1_p0.3.bax.h5 m160828_171546_42199_c101055502550000001823247601061764_s1_p0.bas.h5	pacbio_native pacbio_native pacbio_native pacbio_native	3603145484.0	163482.0	2 3K E03 1.tar.gz		A:1041332538;C:789941375;G:785608794;T:952634306;N:0			1041332538	789941375	785608794	952634306	0	SRX5108027	SRS4117494	SRA820074	Institute of Hydrobiology, Chinese Academy of Sciences\|State Key Laboratory of Freshwater Ecology and Bio	Institute of Hydrobiology, Chinese Academy of Sciences															pacbio	pacbio_early	full_length	random_priming	unknown	bulk	unknown	unknown	China	2018-12-10	Zygote	Embryo	Gonad	Reproductive System
50513	50513	SRR8293427	SRX5108026	SRS4117494	SRP172911	PRJNA498365	Raw sequence reads in the unfertilized eggs of zebrafish Danio rerio	PRJNA498365	Other	Raw sequence reads of full length transcriptome sequencing in the unfertilized eggs of zebrafish Danio rerio.	Three female zebrafish were selected and 100 unfertilized eggs from each female were harvested as three samples Z1 1 Z1 2 and Z1 3 respectively; Identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.	Model organism or animal sample from Danio rerio	unfertilized eggs from three female zebrafish were harvested as samples Z1 M	isolate:3 female zebrafish were selected and 100 unfertilized eggs from each female were harvested as 3 samples Z1 1 Z1 2 and Z1 3 respectively; and identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.\|dev stage:unfertilized egg\|sex:female\|tissue:ovary\|BioSampleModel:Model organism or animal	Full length transcriptome sequencing of zebrafish Danio rerio : adult female unfertilized eggs.	1 2K D05 1	1 2K D05 1	RNA sample Z1 M was reverse transcribed into cDNA. Four fragment ranges 0.5 1K 1 2K 2 3K and >3K were prepared according to the PacBio Iso Seq protocol. PacBio RS II sequencing reactions of 16 SMRT single molecule real time cells 3 cells of 0.5 1K 5 cells of 1 2K 5 cells of 2 3K 3 cells of >3K were performed in DNA Sequencing Reagent 4.0 Clontech Mountain View California USA.	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	SINGLE	PACBIO_SMRT	PacBio RS II	SRP172911	m160831_064528_42199_c101016682550000001823228410211623_s1_p0.1.bax.h5 m160831_064528_42199_c101016682550000001823228410211623_s1_p0.2.bax.h5 m160831_064528_42199_c101016682550000001823228410211623_s1_p0.3.bax.h5 m160831_064528_42199_c101016682550000001823228410211623_s1_p0.bas.h5	pacbio_native pacbio_native pacbio_native pacbio_native	4494598972.0	163482.0	1 2K D05 1.tar.gz		A:1263523570;C:919488657;G:1005901638;T:1241749988;N:0			1263523570	919488657	1005901638	1241749988	0	SRX5108026	SRS4117494	SRA820074	Institute of Hydrobiology, Chinese Academy of Sciences\|State Key Laboratory of Freshwater Ecology and Bio	Institute of Hydrobiology, Chinese Academy of Sciences															pacbio	pacbio_early	full_length	random_priming	unknown	bulk	unknown	unknown	China	2018-12-10	Zygote	Embryo	Gonad	Reproductive System
50514	50514	SRR8293428	SRX5108025	SRS4117494	SRP172911	PRJNA498365	Raw sequence reads in the unfertilized eggs of zebrafish Danio rerio	PRJNA498365	Other	Raw sequence reads of full length transcriptome sequencing in the unfertilized eggs of zebrafish Danio rerio.	Three female zebrafish were selected and 100 unfertilized eggs from each female were harvested as three samples Z1 1 Z1 2 and Z1 3 respectively; Identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.	Model organism or animal sample from Danio rerio	unfertilized eggs from three female zebrafish were harvested as samples Z1 M	isolate:3 female zebrafish were selected and 100 unfertilized eggs from each female were harvested as 3 samples Z1 1 Z1 2 and Z1 3 respectively; and identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.\|dev stage:unfertilized egg\|sex:female\|tissue:ovary\|BioSampleModel:Model organism or animal	Full length transcriptome sequencing of zebrafish Danio rerio : adult female unfertilized eggs.	1 2K E05 1	1 2K E05 1	RNA sample Z1 M was reverse transcribed into cDNA. Four fragment ranges 0.5 1K 1 2K 2 3K and >3K were prepared according to the PacBio Iso Seq protocol. PacBio RS II sequencing reactions of 16 SMRT single molecule real time cells 3 cells of 0.5 1K 5 cells of 1 2K 5 cells of 2 3K 3 cells of >3K were performed in DNA Sequencing Reagent 4.0 Clontech Mountain View California USA.	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	SINGLE	PACBIO_SMRT	PacBio RS II	SRP172911	m160831_110725_42199_c101016682550000001823228410211624_s1_p0.1.bax.h5 m160831_110725_42199_c101016682550000001823228410211624_s1_p0.2.bax.h5 m160831_110725_42199_c101016682550000001823228410211624_s1_p0.3.bax.h5 m160831_110725_42199_c101016682550000001823228410211624_s1_p0.bas.h5	pacbio_native pacbio_native pacbio_native pacbio_native	4610281055.0	163482.0	1 2K E05 1.tar.gz		A:1313884618;C:971754386;G:994748647;T:1264950574;N:0			1313884618	971754386	994748647	1264950574	0	SRX5108025	SRS4117494	SRA820074	Institute of Hydrobiology, Chinese Academy of Sciences\|State Key Laboratory of Freshwater Ecology and Bio	Institute of Hydrobiology, Chinese Academy of Sciences															pacbio	pacbio_early	full_length	random_priming	unknown	bulk	unknown	unknown	China	2018-12-10	Zygote	Embryo	Gonad	Reproductive System
50515	50515	SRR8293429	SRX5108024	SRS4117494	SRP172911	PRJNA498365	Raw sequence reads in the unfertilized eggs of zebrafish Danio rerio	PRJNA498365	Other	Raw sequence reads of full length transcriptome sequencing in the unfertilized eggs of zebrafish Danio rerio.	Three female zebrafish were selected and 100 unfertilized eggs from each female were harvested as three samples Z1 1 Z1 2 and Z1 3 respectively; Identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.	Model organism or animal sample from Danio rerio	unfertilized eggs from three female zebrafish were harvested as samples Z1 M	isolate:3 female zebrafish were selected and 100 unfertilized eggs from each female were harvested as 3 samples Z1 1 Z1 2 and Z1 3 respectively; and identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.\|dev stage:unfertilized egg\|sex:female\|tissue:ovary\|BioSampleModel:Model organism or animal	Full length transcriptome sequencing of zebrafish Danio rerio : adult female unfertilized eggs.	1 2K F03 1	1 2K F03 1	RNA sample Z1 M was reverse transcribed into cDNA. Four fragment ranges 0.5 1K 1 2K 2 3K and >3K were prepared according to the PacBio Iso Seq protocol. PacBio RS II sequencing reactions of 16 SMRT single molecule real time cells 3 cells of 0.5 1K 5 cells of 1 2K 5 cells of 2 3K 3 cells of >3K were performed in DNA Sequencing Reagent 4.0 Clontech Mountain View California USA.	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	SINGLE	PACBIO_SMRT	PacBio RS II	SRP172911	m160828_213458_42199_c101055502550000001823247601061765_s1_p0.1.bax.h5 m160828_213458_42199_c101055502550000001823247601061765_s1_p0.2.bax.h5 m160828_213458_42199_c101055502550000001823247601061765_s1_p0.3.bax.h5 m160828_213458_42199_c101055502550000001823247601061765_s1_p0.bas.h5	pacbio_native pacbio_native pacbio_native pacbio_native	6488051235.0	163482.0	1 2K F03 1.tar.gz		A:1835535517;C:1366315971;G:1464006715;T:1752025312;N:0			1835535517	1366315971	1464006715	1752025312	0	SRX5108024	SRS4117494	SRA820074	Institute of Hydrobiology, Chinese Academy of Sciences\|State Key Laboratory of Freshwater Ecology and Bio	Institute of Hydrobiology, Chinese Academy of Sciences															pacbio	pacbio_early	full_length	random_priming	unknown	bulk	unknown	unknown	China	2018-12-10	Zygote	Embryo	Gonad	Reproductive System
50516	50516	SRR8293430	SRX5108023	SRS4117494	SRP172911	PRJNA498365	Raw sequence reads in the unfertilized eggs of zebrafish Danio rerio	PRJNA498365	Other	Raw sequence reads of full length transcriptome sequencing in the unfertilized eggs of zebrafish Danio rerio.	Three female zebrafish were selected and 100 unfertilized eggs from each female were harvested as three samples Z1 1 Z1 2 and Z1 3 respectively; Identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.	Model organism or animal sample from Danio rerio	unfertilized eggs from three female zebrafish were harvested as samples Z1 M	isolate:3 female zebrafish were selected and 100 unfertilized eggs from each female were harvested as 3 samples Z1 1 Z1 2 and Z1 3 respectively; and identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.\|dev stage:unfertilized egg\|sex:female\|tissue:ovary\|BioSampleModel:Model organism or animal	Full length transcriptome sequencing of zebrafish Danio rerio : adult female unfertilized eggs.	1 2K G05 1	1 2K G05 1	RNA sample Z1 M was reverse transcribed into cDNA. Four fragment ranges 0.5 1K 1 2K 2 3K and >3K were prepared according to the PacBio Iso Seq protocol. PacBio RS II sequencing reactions of 16 SMRT single molecule real time cells 3 cells of 0.5 1K 5 cells of 1 2K 5 cells of 2 3K 3 cells of >3K were performed in DNA Sequencing Reagent 4.0 Clontech Mountain View California USA.	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	SINGLE	PACBIO_SMRT	PacBio RS II	SRP172911	m160829_020016_42199_c101055502550000001823247601061766_s1_p0.1.bax.h5 m160829_020016_42199_c101055502550000001823247601061766_s1_p0.2.bax.h5 m160829_020016_42199_c101055502550000001823247601061766_s1_p0.3.bax.h5 m160829_020016_42199_c101055502550000001823247601061766_s1_p0.bas.h5	pacbio_native pacbio_native pacbio_native pacbio_native	6326394753.0	163482.0	1 2K G03 1.tar.gz		A:1844148357;C:1410947877;G:1367704673;T:1640545786;N:0			1844148357	1410947877	1367704673	1640545786	0	SRX5108023	SRS4117494	SRA820074	Institute of Hydrobiology, Chinese Academy of Sciences\|State Key Laboratory of Freshwater Ecology and Bio	Institute of Hydrobiology, Chinese Academy of Sciences															pacbio	pacbio_early	full_length	random_priming	unknown	bulk	unknown	unknown	China	2018-12-10	Zygote	Embryo	Gonad	Reproductive System
50517	50517	SRR8293431	SRX5108022	SRS4117494	SRP172911	PRJNA498365	Raw sequence reads in the unfertilized eggs of zebrafish Danio rerio	PRJNA498365	Other	Raw sequence reads of full length transcriptome sequencing in the unfertilized eggs of zebrafish Danio rerio.	Three female zebrafish were selected and 100 unfertilized eggs from each female were harvested as three samples Z1 1 Z1 2 and Z1 3 respectively; Identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.	Model organism or animal sample from Danio rerio	unfertilized eggs from three female zebrafish were harvested as samples Z1 M	isolate:3 female zebrafish were selected and 100 unfertilized eggs from each female were harvested as 3 samples Z1 1 Z1 2 and Z1 3 respectively; and identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.\|dev stage:unfertilized egg\|sex:female\|tissue:ovary\|BioSampleModel:Model organism or animal	Full length transcriptome sequencing of zebrafish Danio rerio : adult female unfertilized eggs.	0.5 1K E03 1	0.5 1K E03 1	RNA sample Z1 M was reverse transcribed into cDNA. Four fragment ranges 0.5 1K 1 2K 2 3K and >3K were prepared according to the PacBio Iso Seq protocol. PacBio RS II sequencing reactions of 16 SMRT single molecule real time cells 3 cells of 0.5 1K 5 cells of 1 2K 5 cells of 2 3K 3 cells of >3K were performed in DNA Sequencing Reagent 4.0 Clontech Mountain View California USA.	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	SINGLE	PACBIO_SMRT	PacBio RS II	SRP172911	m160921_142928_42199_c100979762550000001823212907061657_s1_X0.bas.h5 m160921_142928_42199_c100979762550000001823212907061657_s1_X0.3.bax.h5 m160921_142928_42199_c100979762550000001823212907061657_s1_X0.2.bax.h5 m160921_142928_42199_c100979762550000001823212907061657_s1_X0.1.bax.h5	pacbio_native pacbio_native pacbio_native pacbio_native	1906153604.0	163482.0	0.5 1K E03 1.tar.gz		A:568523342;C:407560314;G:389613623;T:500427928;N:0			568523342	407560314	389613623	500427928	0	SRX5108022	SRS4117494	SRA820074	Institute of Hydrobiology, Chinese Academy of Sciences\|State Key Laboratory of Freshwater Ecology and Bio	Institute of Hydrobiology, Chinese Academy of Sciences															pacbio	pacbio_early	full_length	random_priming	unknown	bulk	unknown	unknown	China	2018-12-08	Zygote	Embryo	Gonad	Reproductive System
50518	50518	SRR8293432	SRX5108021	SRS4117494	SRP172911	PRJNA498365	Raw sequence reads in the unfertilized eggs of zebrafish Danio rerio	PRJNA498365	Other	Raw sequence reads of full length transcriptome sequencing in the unfertilized eggs of zebrafish Danio rerio.	Three female zebrafish were selected and 100 unfertilized eggs from each female were harvested as three samples Z1 1 Z1 2 and Z1 3 respectively; Identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.	Model organism or animal sample from Danio rerio	unfertilized eggs from three female zebrafish were harvested as samples Z1 M	isolate:3 female zebrafish were selected and 100 unfertilized eggs from each female were harvested as 3 samples Z1 1 Z1 2 and Z1 3 respectively; and identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.\|dev stage:unfertilized egg\|sex:female\|tissue:ovary\|BioSampleModel:Model organism or animal	Full length transcriptome sequencing of zebrafish Danio rerio : adult female unfertilized eggs.	0.5 1K F03 1	0.5 1K F03 1	RNA sample Z1 M was reverse transcribed into cDNA. Four fragment ranges 0.5 1K 1 2K 2 3K and >3K were prepared according to the PacBio Iso Seq protocol. PacBio RS II sequencing reactions of 16 SMRT single molecule real time cells 3 cells of 0.5 1K 5 cells of 1 2K 5 cells of 2 3K 3 cells of >3K were performed in DNA Sequencing Reagent 4.0 Clontech Mountain View California USA.	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	SINGLE	PACBIO_SMRT	PacBio RS II	SRP172911	m160921_184841_42199_c101055652550000001823238312291647_s1_p0.1.bax.h5 m160921_184841_42199_c101055652550000001823238312291647_s1_p0.2.bax.h5 m160921_184841_42199_c101055652550000001823238312291647_s1_p0.3.bax.h5 m160921_184841_42199_c101055652550000001823238312291647_s1_p0.bas.h5	pacbio_native pacbio_native pacbio_native pacbio_native	4156910909.0	163482.0	0.5 1K F03 1.tar.gz		A:1183616929;C:878682771;G:890537851;T:1136413189;N:0			1183616929	878682771	890537851	1136413189	0	SRX5108021	SRS4117494	SRA820074	Institute of Hydrobiology, Chinese Academy of Sciences\|State Key Laboratory of Freshwater Ecology and Bio	Institute of Hydrobiology, Chinese Academy of Sciences															pacbio	pacbio_early	full_length	random_priming	unknown	bulk	unknown	unknown	China	2018-12-10	Zygote	Embryo	Gonad	Reproductive System
50519	50519	SRR8293433	SRX5108020	SRS4117494	SRP172911	PRJNA498365	Raw sequence reads in the unfertilized eggs of zebrafish Danio rerio	PRJNA498365	Other	Raw sequence reads of full length transcriptome sequencing in the unfertilized eggs of zebrafish Danio rerio.	Three female zebrafish were selected and 100 unfertilized eggs from each female were harvested as three samples Z1 1 Z1 2 and Z1 3 respectively; Identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.	Model organism or animal sample from Danio rerio	unfertilized eggs from three female zebrafish were harvested as samples Z1 M	isolate:3 female zebrafish were selected and 100 unfertilized eggs from each female were harvested as 3 samples Z1 1 Z1 2 and Z1 3 respectively; and identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.\|dev stage:unfertilized egg\|sex:female\|tissue:ovary\|BioSampleModel:Model organism or animal	Full length transcriptome sequencing of zebrafish Danio rerio : adult female unfertilized eggs.	0.5 1K G03 1	0.5 1K G03 1	RNA sample Z1 M was reverse transcribed into cDNA. Four fragment ranges 0.5 1K 1 2K 2 3K and >3K were prepared according to the PacBio Iso Seq protocol. PacBio RS II sequencing reactions of 16 SMRT single molecule real time cells 3 cells of 0.5 1K 5 cells of 1 2K 5 cells of 2 3K 3 cells of >3K were performed in DNA Sequencing Reagent 4.0 Clontech Mountain View California USA.	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	SINGLE	PACBIO_SMRT	PacBio RS II	SRP172911	m160829_063211_42199_c101055502550000001823247601061767_s1_p0.bas.h5 m160829_063211_42199_c101055502550000001823247601061767_s1_p0.3.bax.h5 m160829_063211_42199_c101055502550000001823247601061767_s1_p0.2.bax.h5 m160829_063211_42199_c101055502550000001823247601061767_s1_p0.1.bax.h5	pacbio_native pacbio_native pacbio_native pacbio_native	5660530911.0	163482.0	0.5 1K H03 1.tar.gz		A:1835439052;C:1406954743;G:1037776936;T:1307349158;N:0			1835439052	1406954743	1037776936	1307349158	0	SRX5108020	SRS4117494	SRA820074	Institute of Hydrobiology, Chinese Academy of Sciences\|State Key Laboratory of Freshwater Ecology and Bio	Institute of Hydrobiology, Chinese Academy of Sciences															pacbio	pacbio_early	full_length	random_priming	unknown	bulk	unknown	unknown	China	2018-12-08	Zygote	Embryo	Gonad	Reproductive System
50520	50520	SRR8293434	SRX5108019	SRS4117494	SRP172911	PRJNA498365	Raw sequence reads in the unfertilized eggs of zebrafish Danio rerio	PRJNA498365	Other	Raw sequence reads of full length transcriptome sequencing in the unfertilized eggs of zebrafish Danio rerio.	Three female zebrafish were selected and 100 unfertilized eggs from each female were harvested as three samples Z1 1 Z1 2 and Z1 3 respectively; Identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.	Model organism or animal sample from Danio rerio	unfertilized eggs from three female zebrafish were harvested as samples Z1 M	isolate:3 female zebrafish were selected and 100 unfertilized eggs from each female were harvested as 3 samples Z1 1 Z1 2 and Z1 3 respectively; and identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.\|dev stage:unfertilized egg\|sex:female\|tissue:ovary\|BioSampleModel:Model organism or animal	Full length transcriptome sequencing of zebrafish Danio rerio : adult female unfertilized eggs.	1 2K C05 1	1 2K C05 1	RNA sample Z1 M was reverse transcribed into cDNA. Four fragment ranges 0.5 1K 1 2K 2 3K and >3K were prepared according to the PacBio Iso Seq protocol. PacBio RS II sequencing reactions of 16 SMRT single molecule real time cells 3 cells of 0.5 1K 5 cells of 1 2K 5 cells of 2 3K 3 cells of >3K were performed in DNA Sequencing Reagent 4.0 Clontech Mountain View California USA.	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	SINGLE	PACBIO_SMRT	PacBio RS II	SRP172911	m160831_022615_42199_c101016682550000001823228410211622_s1_p0.1.bax.h5 m160831_022615_42199_c101016682550000001823228410211622_s1_p0.2.bax.h5 m160831_022615_42199_c101016682550000001823228410211622_s1_p0.3.bax.h5 m160831_022615_42199_c101016682550000001823228410211622_s1_p0.bas.h5	pacbio_native pacbio_native pacbio_native pacbio_native	3047073997.0	163482.0	1 2K C05 1.tar.gz		A:862003813;C:632482019;G:660595007;T:843966997;N:0			862003813	632482019	660595007	843966997	0	SRX5108019	SRS4117494	SRA820074	Institute of Hydrobiology, Chinese Academy of Sciences\|State Key Laboratory of Freshwater Ecology and Bio	Institute of Hydrobiology, Chinese Academy of Sciences															pacbio	pacbio_early	full_length	random_priming	unknown	bulk	unknown	unknown	China	2018-12-10	Zygote	Embryo	Gonad	Reproductive System
50521	50521	SRR8293435	SRX5108018	SRS4117494	SRP172911	PRJNA498365	Raw sequence reads in the unfertilized eggs of zebrafish Danio rerio	PRJNA498365	Other	Raw sequence reads of full length transcriptome sequencing in the unfertilized eggs of zebrafish Danio rerio.	Three female zebrafish were selected and 100 unfertilized eggs from each female were harvested as three samples Z1 1 Z1 2 and Z1 3 respectively; Identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.	Model organism or animal sample from Danio rerio	unfertilized eggs from three female zebrafish were harvested as samples Z1 M	isolate:3 female zebrafish were selected and 100 unfertilized eggs from each female were harvested as 3 samples Z1 1 Z1 2 and Z1 3 respectively; and identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.\|dev stage:unfertilized egg\|sex:female\|tissue:ovary\|BioSampleModel:Model organism or animal	Full length transcriptome sequencing of zebrafish Danio rerio : adult female unfertilized eggs.	2 3K F05 1	2 3K F05 1	RNA sample Z1 M was reverse transcribed into cDNA. Four fragment ranges 0.5 1K 1 2K 2 3K and >3K were prepared according to the PacBio Iso Seq protocol. PacBio RS II sequencing reactions of 16 SMRT single molecule real time cells 3 cells of 0.5 1K 5 cells of 1 2K 5 cells of 2 3K 3 cells of >3K were performed in DNA Sequencing Reagent 4.0 Clontech Mountain View California USA.	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	SINGLE	PACBIO_SMRT	PacBio RS II	SRP172911	m160831_152721_42199_c101016682550000001823228410211625_s1_p0.1.bax.h5 m160831_152721_42199_c101016682550000001823228410211625_s1_p0.2.bax.h5 m160831_152721_42199_c101016682550000001823228410211625_s1_p0.3.bax.h5 m160831_152721_42199_c101016682550000001823228410211625_s1_p0.bas.h5	pacbio_native pacbio_native pacbio_native pacbio_native	3504827488.0	163482.0	2 3K F05 1.tar.gz		A:1035191904;C:787763869;G:735456262;T:916015813;N:0			1035191904	787763869	735456262	916015813	0	SRX5108018	SRS4117494	SRA820074	Institute of Hydrobiology, Chinese Academy of Sciences\|State Key Laboratory of Freshwater Ecology and Bio	Institute of Hydrobiology, Chinese Academy of Sciences															pacbio	pacbio_early	full_length	random_priming	unknown	bulk	unknown	unknown	China	2018-12-10	Zygote	Embryo	Gonad	Reproductive System
50522	50522	SRR8293436	SRX5108017	SRS4117494	SRP172911	PRJNA498365	Raw sequence reads in the unfertilized eggs of zebrafish Danio rerio	PRJNA498365	Other	Raw sequence reads of full length transcriptome sequencing in the unfertilized eggs of zebrafish Danio rerio.	Three female zebrafish were selected and 100 unfertilized eggs from each female were harvested as three samples Z1 1 Z1 2 and Z1 3 respectively; Identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.	Model organism or animal sample from Danio rerio	unfertilized eggs from three female zebrafish were harvested as samples Z1 M	isolate:3 female zebrafish were selected and 100 unfertilized eggs from each female were harvested as 3 samples Z1 1 Z1 2 and Z1 3 respectively; and identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.\|dev stage:unfertilized egg\|sex:female\|tissue:ovary\|BioSampleModel:Model organism or animal	Full length transcriptome sequencing of zebrafish Danio rerio : adult female unfertilized eggs.	2 3K G05 1	2 3K G05 1	RNA sample Z1 M was reverse transcribed into cDNA. Four fragment ranges 0.5 1K 1 2K 2 3K and >3K were prepared according to the PacBio Iso Seq protocol. PacBio RS II sequencing reactions of 16 SMRT single molecule real time cells 3 cells of 0.5 1K 5 cells of 1 2K 5 cells of 2 3K 3 cells of >3K were performed in DNA Sequencing Reagent 4.0 Clontech Mountain View California USA.	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	SINGLE	PACBIO_SMRT	PacBio RS II	SRP172911	m160831_195005_42199_c101016682550000001823228410211626_s1_p0.1.bax.h5 m160831_195005_42199_c101016682550000001823228410211626_s1_p0.2.bax.h5 m160831_195005_42199_c101016682550000001823228410211626_s1_p0.3.bax.h5 m160831_195005_42199_c101016682550000001823228410211626_s1_p0.bas.h5	pacbio_native pacbio_native pacbio_native pacbio_native	3325636539.0	163482.0	2 3K G05 1.tar.gz		A:945624516;C:712334057;G:726829680;T:910995593;N:0			945624516	712334057	726829680	910995593	0	SRX5108017	SRS4117494	SRA820074	Institute of Hydrobiology, Chinese Academy of Sciences\|State Key Laboratory of Freshwater Ecology and Bio	Institute of Hydrobiology, Chinese Academy of Sciences															pacbio	pacbio_early	full_length	random_priming	unknown	bulk	unknown	unknown	China	2018-12-10	Zygote	Embryo	Gonad	Reproductive System
50523	50523	SRR8293437	SRX5108016	SRS4117494	SRP172911	PRJNA498365	Raw sequence reads in the unfertilized eggs of zebrafish Danio rerio	PRJNA498365	Other	Raw sequence reads of full length transcriptome sequencing in the unfertilized eggs of zebrafish Danio rerio.	Three female zebrafish were selected and 100 unfertilized eggs from each female were harvested as three samples Z1 1 Z1 2 and Z1 3 respectively; Identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.	Model organism or animal sample from Danio rerio	unfertilized eggs from three female zebrafish were harvested as samples Z1 M	isolate:3 female zebrafish were selected and 100 unfertilized eggs from each female were harvested as 3 samples Z1 1 Z1 2 and Z1 3 respectively; and identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.\|dev stage:unfertilized egg\|sex:female\|tissue:ovary\|BioSampleModel:Model organism or animal	Full length transcriptome sequencing of zebrafish Danio rerio : adult female unfertilized eggs.	2 3K H05 1	2 3K H05 1	RNA sample Z1 M was reverse transcribed into cDNA. Four fragment ranges 0.5 1K 1 2K 2 3K and >3K were prepared according to the PacBio Iso Seq protocol. PacBio RS II sequencing reactions of 16 SMRT single molecule real time cells 3 cells of 0.5 1K 5 cells of 1 2K 5 cells of 2 3K 3 cells of >3K were performed in DNA Sequencing Reagent 4.0 Clontech Mountain View California USA.	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	SINGLE	PACBIO_SMRT	PacBio RS II	SRP172911	m160901_000924_42199_c101016682550000001823228410211627_s1_p0.1.bax.h5 m160901_000924_42199_c101016682550000001823228410211627_s1_p0.2.bax.h5 m160901_000924_42199_c101016682550000001823228410211627_s1_p0.3.bax.h5 m160901_000924_42199_c101016682550000001823228410211627_s1_p0.bas.h5	pacbio_native pacbio_native pacbio_native pacbio_native	3219471171.0	163482.0	2 3K H05 1.tar.gz		A:955121582;C:717645710;G:671893655;T:846270302;N:0			955121582	717645710	671893655	846270302	0	SRX5108016	SRS4117494	SRA820074	Institute of Hydrobiology, Chinese Academy of Sciences\|State Key Laboratory of Freshwater Ecology and Bio	Institute of Hydrobiology, Chinese Academy of Sciences															pacbio	pacbio_early	full_length	random_priming	unknown	bulk	unknown	unknown	China	2018-12-10	Zygote	Embryo	Gonad	Reproductive System
50524	50524	SRR8293438	SRX5108015	SRS4117494	SRP172911	PRJNA498365	Raw sequence reads in the unfertilized eggs of zebrafish Danio rerio	PRJNA498365	Other	Raw sequence reads of full length transcriptome sequencing in the unfertilized eggs of zebrafish Danio rerio.	Three female zebrafish were selected and 100 unfertilized eggs from each female were harvested as three samples Z1 1 Z1 2 and Z1 3 respectively; Identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.	Model organism or animal sample from Danio rerio	unfertilized eggs from three female zebrafish were harvested as samples Z1 M	isolate:3 female zebrafish were selected and 100 unfertilized eggs from each female were harvested as 3 samples Z1 1 Z1 2 and Z1 3 respectively; and identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.\|dev stage:unfertilized egg\|sex:female\|tissue:ovary\|BioSampleModel:Model organism or animal	Full length transcriptome sequencing of zebrafish Danio rerio : adult female unfertilized eggs.	3K plus C03 1	3K plus C03 1	RNA sample Z1 M was reverse transcribed into cDNA. Four fragment ranges 0.5 1K 1 2K 2 3K and >3K were prepared according to the PacBio Iso Seq protocol. PacBio RS II sequencing reactions of 16 SMRT single molecule real time cells 3 cells of 0.5 1K 5 cells of 1 2K 5 cells of 2 3K 3 cells of >3K were performed in DNA Sequencing Reagent 4.0 Clontech Mountain View California USA.	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	SINGLE	PACBIO_SMRT	PacBio RS II	SRP172911	m160828_083719_42199_c101055502550000001823247601061762_s1_p0.1.bax.h5 m160828_083719_42199_c101055502550000001823247601061762_s1_p0.2.bax.h5 m160828_083719_42199_c101055502550000001823247601061762_s1_p0.3.bax.h5 m160828_083719_42199_c101055502550000001823247601061762_s1_p0.bas.h5	pacbio_native pacbio_native pacbio_native pacbio_native	2241335194.0	163482.0	3K plus C03 1.tar.gz		A:714450646;C:554512788;G:442348736;T:513624736;N:0			714450646	554512788	442348736	513624736	0	SRX5108015	SRS4117494	SRA820074	Institute of Hydrobiology, Chinese Academy of Sciences\|State Key Laboratory of Freshwater Ecology and Bio	Institute of Hydrobiology, Chinese Academy of Sciences															pacbio	pacbio_early	full_length	random_priming	unknown	bulk	unknown	unknown	China	2018-12-10	Zygote	Embryo	Gonad	Reproductive System
50525	50525	SRR8293439	SRX5108014	SRS4117494	SRP172911	PRJNA498365	Raw sequence reads in the unfertilized eggs of zebrafish Danio rerio	PRJNA498365	Other	Raw sequence reads of full length transcriptome sequencing in the unfertilized eggs of zebrafish Danio rerio.	Three female zebrafish were selected and 100 unfertilized eggs from each female were harvested as three samples Z1 1 Z1 2 and Z1 3 respectively; Identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.	Model organism or animal sample from Danio rerio	unfertilized eggs from three female zebrafish were harvested as samples Z1 M	isolate:3 female zebrafish were selected and 100 unfertilized eggs from each female were harvested as 3 samples Z1 1 Z1 2 and Z1 3 respectively; and identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.\|dev stage:unfertilized egg\|sex:female\|tissue:ovary\|BioSampleModel:Model organism or animal	Full length transcriptome sequencing of zebrafish Danio rerio : adult female unfertilized eggs.	3K plus G03 1	3K plus G03 1	RNA sample Z1 M was reverse transcribed into cDNA. Four fragment ranges 0.5 1K 1 2K 2 3K and >3K were prepared according to the PacBio Iso Seq protocol. PacBio RS II sequencing reactions of 16 SMRT single molecule real time cells 3 cells of 0.5 1K 5 cells of 1 2K 5 cells of 2 3K 3 cells of >3K were performed in DNA Sequencing Reagent 4.0 Clontech Mountain View California USA.	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	SINGLE	PACBIO_SMRT	PacBio RS II	SRP172911	m160921_231100_42199_c100829932550000001823181912311557_s1_X0.1.bax.h5 m160921_231100_42199_c100829932550000001823181912311557_s1_X0.2.bax.h5 m160921_231100_42199_c100829932550000001823181912311557_s1_X0.3.bax.h5 m160921_231100_42199_c100829932550000001823181912311557_s1_X0.bas.h5	pacbio_native pacbio_native pacbio_native pacbio_native	1500621674.0	163482.0	3K plus G03 1.tar.gz		A:461686513;C:353289117;G:298838025;T:376337789;N:0			461686513	353289117	298838025	376337789	0	SRX5108014	SRS4117494	SRA820074	Institute of Hydrobiology, Chinese Academy of Sciences\|State Key Laboratory of Freshwater Ecology and Bio	Institute of Hydrobiology, Chinese Academy of Sciences															pacbio	pacbio_early	full_length	random_priming	unknown	bulk	unknown	unknown	China	2018-12-10	Zygote	Embryo	Gonad	Reproductive System
50526	50526	SRR8293440	SRX5108013	SRS4117494	SRP172911	PRJNA498365	Raw sequence reads in the unfertilized eggs of zebrafish Danio rerio	PRJNA498365	Other	Raw sequence reads of full length transcriptome sequencing in the unfertilized eggs of zebrafish Danio rerio.	Three female zebrafish were selected and 100 unfertilized eggs from each female were harvested as three samples Z1 1 Z1 2 and Z1 3 respectively; Identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.	Model organism or animal sample from Danio rerio	unfertilized eggs from three female zebrafish were harvested as samples Z1 M	isolate:3 female zebrafish were selected and 100 unfertilized eggs from each female were harvested as 3 samples Z1 1 Z1 2 and Z1 3 respectively; and identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.\|dev stage:unfertilized egg\|sex:female\|tissue:ovary\|BioSampleModel:Model organism or animal	Full length transcriptome sequencing of zebrafish Danio rerio : adult female unfertilized eggs.	3K plus H03 1	3K plus H03 1	RNA sample Z1 M was reverse transcribed into cDNA. Four fragment ranges 0.5 1K 1 2K 2 3K and >3K were prepared according to the PacBio Iso Seq protocol. PacBio RS II sequencing reactions of 16 SMRT single molecule real time cells 3 cells of 0.5 1K 5 cells of 1 2K 5 cells of 2 3K 3 cells of >3K were performed in DNA Sequencing Reagent 4.0 Clontech Mountain View California USA.	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	SINGLE	PACBIO_SMRT	PacBio RS II	SRP172911	m160922_033036_42199_c101055332550000001823238312291650_s1_p0.bas.h5 m160922_033036_42199_c101055332550000001823238312291650_s1_p0.3.bax.h5 m160922_033036_42199_c101055332550000001823238312291650_s1_p0.2.bax.h5 m160922_033036_42199_c101055332550000001823238312291650_s1_p0.1.bax.h5	pacbio_native pacbio_native pacbio_native pacbio_native	2783940881.0	163482.0	3K plus H03 1.tar.gz		A:785688594;C:616582821;G:618500268;T:743803835;N:0			785688594	616582821	618500268	743803835	0	SRX5108013	SRS4117494	SRA820074	Institute of Hydrobiology, Chinese Academy of Sciences\|State Key Laboratory of Freshwater Ecology and Bio	Institute of Hydrobiology, Chinese Academy of Sciences															pacbio	pacbio_early	full_length	random_priming	unknown	bulk	unknown	unknown	China	2018-12-08	Zygote	Embryo	Gonad	Reproductive System
58533	58533	SRR11355387	SRX7957249	SRS6343356	SRP253408	PRJNA613558	Transcriptomic assessments RNA sequencing in ovaries following treatments of gravid female zebrafish to an antibiotic mixture	PRJNA613558	Other	As the use of antimicrobials during pregnancy and the perinatal period may lead to adverse outcomes such as miscarriages and newborn disease the purpose of present study was to evaluate the influence of antibiotic exposure in offspring following treatments of gravid female zebrafish to an antibiotic mixture. For the F0 generation adult zebrafish AB strain at sexual maturity 150 dpf dpf were selected for experimentation 50% male and 50% pregnant female. Given a significant change occurred in eggs production and F1 survival at birth in present study combined with antibiotics bioaccumulated in ovary we suspect that antibiotic exposure might impact the ovary of F0 generation zebrafish and thus affect egg production and survival. Therefore ovaries of the F0 generation were evaluated for transcriptional effects in different antibiotics mixture exposure 0 1 and 100 ug/L using a HTS approach coupled with advanced bioinformatic tools.		C2 3	C2 3	strain:AB\|isolate:C2\|breed:not applicable\|cultivar:not applicable\|ecotype:not applicable\|age:not applicable\|dev stage:not applicable\|sex:female\|tissue:ovary\|collection date:2019 11 01\|geo loc name:China: Shenzhen Guangdong\|replicate:biological replicate 3\|BioSampleModel:Model organism or animal	RNA seq of zebrafish	C2 320200327	C2 320200327	RNA seq of zebrafish in different conditions	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	BGISEQ	BGISEQ-500	SRP253408	C2_3_1.fq.gz C2_3_2.fq.gz	fastq fastq	6857650800.0	45717672.0	C2 3 1.fq.gz	0:150 1:150	A:1826466263;C:1599272942;G:1580689630;T:1851144875;N:77090	150	150	1826466263	1599272942	1580689630	1851144875	77090	SRX7957249	SRS6343356	SRA1056819	Southern University of Science and Technology\|School of Environmental Science and Engineering	Southern University of Science and Technology	1	0.93222		0.02854		0.75138		0.50759		150		B		usable mapping rate	bgi	bgi	unknown	random_priming	unknown	bulk	unknown	unknown	China	2020-03-20	Undetermined	Adult	Gonad	Reproductive System
58534	58534	SRR11355388	SRX7957248	SRS6343355	SRP253408	PRJNA613558	Transcriptomic assessments RNA sequencing in ovaries following treatments of gravid female zebrafish to an antibiotic mixture	PRJNA613558	Other	As the use of antimicrobials during pregnancy and the perinatal period may lead to adverse outcomes such as miscarriages and newborn disease the purpose of present study was to evaluate the influence of antibiotic exposure in offspring following treatments of gravid female zebrafish to an antibiotic mixture. For the F0 generation adult zebrafish AB strain at sexual maturity 150 dpf dpf were selected for experimentation 50% male and 50% pregnant female. Given a significant change occurred in eggs production and F1 survival at birth in present study combined with antibiotics bioaccumulated in ovary we suspect that antibiotic exposure might impact the ovary of F0 generation zebrafish and thus affect egg production and survival. Therefore ovaries of the F0 generation were evaluated for transcriptional effects in different antibiotics mixture exposure 0 1 and 100 ug/L using a HTS approach coupled with advanced bioinformatic tools.		C2 2	C2 2	strain:AB\|isolate:C2\|breed:not applicable\|cultivar:not applicable\|ecotype:not applicable\|age:not applicable\|dev stage:not applicable\|sex:female\|tissue:ovary\|collection date:2019 11 01\|geo loc name:China: Shenzhen Guangdong\|replicate:biological replicate 2\|BioSampleModel:Model organism or animal	RNA seq of zebrafish	C2 220200326	C2 220200326	RNA seq of zebrafish in different conditions	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	BGISEQ	BGISEQ-500	SRP253408	C2_2_1.fq.gz C2_2_2.fq.gz	fastq fastq	6859954800.0	45733032.0	C2 2 1.fq.gz	0:150 1:150	A:1836618967;C:1591135182;G:1572318102;T:1859806048;N:76501	150	150	1836618967	1591135182	1572318102	1859806048	76501	SRX7957248	SRS6343355	SRA1056819	Southern University of Science and Technology\|School of Environmental Science and Engineering	Southern University of Science and Technology	1	0.93237		0.03248		0.74663		0.5081		150		B		usable mapping rate	bgi	bgi	unknown	random_priming	unknown	bulk	unknown	unknown	China	2020-03-20	Undetermined	Adult	Gonad	Reproductive System
58535	58535	SRR11355389	SRX7957247	SRS6343354	SRP253408	PRJNA613558	Transcriptomic assessments RNA sequencing in ovaries following treatments of gravid female zebrafish to an antibiotic mixture	PRJNA613558	Other	As the use of antimicrobials during pregnancy and the perinatal period may lead to adverse outcomes such as miscarriages and newborn disease the purpose of present study was to evaluate the influence of antibiotic exposure in offspring following treatments of gravid female zebrafish to an antibiotic mixture. For the F0 generation adult zebrafish AB strain at sexual maturity 150 dpf dpf were selected for experimentation 50% male and 50% pregnant female. Given a significant change occurred in eggs production and F1 survival at birth in present study combined with antibiotics bioaccumulated in ovary we suspect that antibiotic exposure might impact the ovary of F0 generation zebrafish and thus affect egg production and survival. Therefore ovaries of the F0 generation were evaluated for transcriptional effects in different antibiotics mixture exposure 0 1 and 100 ug/L using a HTS approach coupled with advanced bioinformatic tools.		C2 1	C2 1	strain:AB\|isolate:C2\|breed:not applicable\|cultivar:not applicable\|ecotype:not applicable\|age:not applicable\|dev stage:not applicable\|sex:female\|tissue:ovary\|collection date:2019 11 01\|geo loc name:China: Shenzhen Guangdong\|replicate:biological replicate 1\|BioSampleModel:Model organism or animal	RNA seq of zebrafish	C2 120200325	C2 120200325	RNA seq of zebrafish in different conditions	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	BGISEQ	BGISEQ-500	SRP253408	C2_1_1.fq.gz C2_1_2.fq.gz	fastq fastq	6618974400.0	44126496.0	C2 1 1.fq.gz	0:150 1:150	A:1774116288;C:1533828286;G:1511526952;T:1799423408;N:79466	150	150	1774116288	1533828286	1511526952	1799423408	79466	SRX7957247	SRS6343354	SRA1056819	Southern University of Science and Technology\|School of Environmental Science and Engineering	Southern University of Science and Technology	1	0.9326		0.02973		0.75426		0.50678		150		B		usable mapping rate	bgi	bgi	unknown	random_priming	unknown	bulk	unknown	unknown	China	2020-03-20	Undetermined	Adult	Gonad	Reproductive System
58536	58536	SRR11355390	SRX7957246	SRS6343353	SRP253408	PRJNA613558	Transcriptomic assessments RNA sequencing in ovaries following treatments of gravid female zebrafish to an antibiotic mixture	PRJNA613558	Other	As the use of antimicrobials during pregnancy and the perinatal period may lead to adverse outcomes such as miscarriages and newborn disease the purpose of present study was to evaluate the influence of antibiotic exposure in offspring following treatments of gravid female zebrafish to an antibiotic mixture. For the F0 generation adult zebrafish AB strain at sexual maturity 150 dpf dpf were selected for experimentation 50% male and 50% pregnant female. Given a significant change occurred in eggs production and F1 survival at birth in present study combined with antibiotics bioaccumulated in ovary we suspect that antibiotic exposure might impact the ovary of F0 generation zebrafish and thus affect egg production and survival. Therefore ovaries of the F0 generation were evaluated for transcriptional effects in different antibiotics mixture exposure 0 1 and 100 ug/L using a HTS approach coupled with advanced bioinformatic tools.		C1 3	C1 3	strain:AB\|isolate:C1\|breed:not applicable\|cultivar:not applicable\|ecotype:not applicable\|age:not applicable\|dev stage:not applicable\|sex:female\|tissue:ovary\|collection date:2019 11 01\|geo loc name:China: Shenzhen Guangdong\|replicate:biological replicate 3\|BioSampleModel:Model organism or animal	RNA seq of zebrafish	C1 320200324	C1 320200324	RNA seq of zebrafish in different conditions	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	BGISEQ	BGISEQ-500	SRP253408	C1_3_1.fq.gz C1_3_2.fq.gz	fastq fastq	6837729600.0	45584864.0	C1 3 1.fq.gz	0:150 1:150	A:1831266308;C:1587032733;G:1565071069;T:1853950421;N:409069	150	150	1831266308	1587032733	1565071069	1853950421	409069	SRX7957246	SRS6343353	SRA1056819	Southern University of Science and Technology\|School of Environmental Science and Engineering	Southern University of Science and Technology	1	0.93541		0.03212		0.74681		0.50268		150		B		usable mapping rate	bgi	bgi	unknown	random_priming	unknown	bulk	unknown	unknown	China	2020-03-20	Undetermined	Adult	Gonad	Reproductive System
58537	58537	SRR11355391	SRX7957245	SRS6343352	SRP253408	PRJNA613558	Transcriptomic assessments RNA sequencing in ovaries following treatments of gravid female zebrafish to an antibiotic mixture	PRJNA613558	Other	As the use of antimicrobials during pregnancy and the perinatal period may lead to adverse outcomes such as miscarriages and newborn disease the purpose of present study was to evaluate the influence of antibiotic exposure in offspring following treatments of gravid female zebrafish to an antibiotic mixture. For the F0 generation adult zebrafish AB strain at sexual maturity 150 dpf dpf were selected for experimentation 50% male and 50% pregnant female. Given a significant change occurred in eggs production and F1 survival at birth in present study combined with antibiotics bioaccumulated in ovary we suspect that antibiotic exposure might impact the ovary of F0 generation zebrafish and thus affect egg production and survival. Therefore ovaries of the F0 generation were evaluated for transcriptional effects in different antibiotics mixture exposure 0 1 and 100 ug/L using a HTS approach coupled with advanced bioinformatic tools.		C1 2	C1 2	strain:AB\|isolate:C1\|breed:not applicable\|cultivar:not applicable\|ecotype:not applicable\|age:not applicable\|dev stage:not applicable\|sex:female\|tissue:ovary\|collection date:2019 11 01\|geo loc name:China: Shenzhen Guangdong\|replicate:biological replicate 2\|BioSampleModel:Model organism or animal	RNA seq of zebrafish	C1 220200323	C1 220200323	RNA seq of zebrafish in different conditions	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	BGISEQ	BGISEQ-500	SRP253408	C1_2_2.fq.gz C1_2_1.fq.gz	fastq fastq	6860328000.0	45735520.0	C1 2 1.fq.gz	0:150 1:150	A:1838176072;C:1591277709;G:1569605888;T:1861063734;N:204597	150	150	1838176072	1591277709	1569605888	1861063734	204597	SRX7957245	SRS6343352	SRA1056819	Southern University of Science and Technology\|School of Environmental Science and Engineering	Southern University of Science and Technology	1	0.93763		0.033		0.74617		0.50287		150		B		usable mapping rate	bgi	bgi	unknown	random_priming	unknown	bulk	unknown	unknown	China	2020-03-20	Undetermined	Adult	Gonad	Reproductive System
58538	58538	SRR11355392	SRX7957244	SRS6343351	SRP253408	PRJNA613558	Transcriptomic assessments RNA sequencing in ovaries following treatments of gravid female zebrafish to an antibiotic mixture	PRJNA613558	Other	As the use of antimicrobials during pregnancy and the perinatal period may lead to adverse outcomes such as miscarriages and newborn disease the purpose of present study was to evaluate the influence of antibiotic exposure in offspring following treatments of gravid female zebrafish to an antibiotic mixture. For the F0 generation adult zebrafish AB strain at sexual maturity 150 dpf dpf were selected for experimentation 50% male and 50% pregnant female. Given a significant change occurred in eggs production and F1 survival at birth in present study combined with antibiotics bioaccumulated in ovary we suspect that antibiotic exposure might impact the ovary of F0 generation zebrafish and thus affect egg production and survival. Therefore ovaries of the F0 generation were evaluated for transcriptional effects in different antibiotics mixture exposure 0 1 and 100 ug/L using a HTS approach coupled with advanced bioinformatic tools.		C1 1	C1 1	strain:AB\|isolate:C1\|breed:not applicable\|cultivar:not applicable\|ecotype:not applicable\|age:not applicable\|dev stage:not applicable\|sex:female\|tissue:ovary\|collection date:2019 11 01\|geo loc name:China: Shenzhen Guangdong\|replicate:biological replicate 1\|BioSampleModel:Model organism or animal	RNA seq of zebrafish	C1 120200322	C1 120200322	RNA seq of zebrafish in different conditions	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	BGISEQ	BGISEQ-500	SRP253408	C1_1_1.fq.gz C1_1_2.fq.gz	fastq fastq	6865547700.0	45770318.0	C1 1 1.fq.gz	0:150 1:150	A:1841774713;C:1591288582;G:1570400871;T:1861867728;N:215806	150	150	1841774713	1591288582	1570400871	1861867728	215806	SRX7957244	SRS6343351	SRA1056819	Southern University of Science and Technology\|School of Environmental Science and Engineering	Southern University of Science and Technology	1	0.93567		0.03152		0.74653		0.50239		150		B		usable mapping rate	bgi	bgi	unknown	random_priming	unknown	bulk	unknown	unknown	China	2020-03-20	Undetermined	Adult	Gonad	Reproductive System
58539	58539	SRR11355393	SRX7957243	SRS6343350	SRP253408	PRJNA613558	Transcriptomic assessments RNA sequencing in ovaries following treatments of gravid female zebrafish to an antibiotic mixture	PRJNA613558	Other	As the use of antimicrobials during pregnancy and the perinatal period may lead to adverse outcomes such as miscarriages and newborn disease the purpose of present study was to evaluate the influence of antibiotic exposure in offspring following treatments of gravid female zebrafish to an antibiotic mixture. For the F0 generation adult zebrafish AB strain at sexual maturity 150 dpf dpf were selected for experimentation 50% male and 50% pregnant female. Given a significant change occurred in eggs production and F1 survival at birth in present study combined with antibiotics bioaccumulated in ovary we suspect that antibiotic exposure might impact the ovary of F0 generation zebrafish and thus affect egg production and survival. Therefore ovaries of the F0 generation were evaluated for transcriptional effects in different antibiotics mixture exposure 0 1 and 100 ug/L using a HTS approach coupled with advanced bioinformatic tools.		C0 3	C0 3	strain:AB\|isolate:C0\|breed:not applicable\|cultivar:not applicable\|ecotype:not applicable\|age:not applicable\|dev stage:not applicable\|sex:female\|tissue:ovary\|collection date:2019 11 01\|geo loc name:China: Shenzhen Guangdong\|replicate:biological replicate 3\|BioSampleModel:Model organism or animal	RNA seq of zebrafish	C0 320200321	C0 320200321	RNA seq of zebrafish in different conditions	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	BGISEQ	BGISEQ-500	SRP253408	C0_3_1.fq.gz C0_3_2.fq.gz	fastq fastq	6824622600.0	45497484.0	C0 3 1.fq.gz	0:150 1:150	A:1833660953;C:1578510104;G:1558095174;T:1854128169;N:228200	150	150	1833660953	1578510104	1558095174	1854128169	228200	SRX7957243	SRS6343350	SRA1056819	Southern University of Science and Technology\|School of Environmental Science and Engineering	Southern University of Science and Technology	1	0.93758		0.0323		0.75024		0.50852		150		B		usable mapping rate	bgi	bgi	unknown	random_priming	unknown	bulk	unknown	unknown	China	2020-03-20	Undetermined	Adult	Gonad	Reproductive System
58540	58540	SRR11355394	SRX7957242	SRS6343349	SRP253408	PRJNA613558	Transcriptomic assessments RNA sequencing in ovaries following treatments of gravid female zebrafish to an antibiotic mixture	PRJNA613558	Other	As the use of antimicrobials during pregnancy and the perinatal period may lead to adverse outcomes such as miscarriages and newborn disease the purpose of present study was to evaluate the influence of antibiotic exposure in offspring following treatments of gravid female zebrafish to an antibiotic mixture. For the F0 generation adult zebrafish AB strain at sexual maturity 150 dpf dpf were selected for experimentation 50% male and 50% pregnant female. Given a significant change occurred in eggs production and F1 survival at birth in present study combined with antibiotics bioaccumulated in ovary we suspect that antibiotic exposure might impact the ovary of F0 generation zebrafish and thus affect egg production and survival. Therefore ovaries of the F0 generation were evaluated for transcriptional effects in different antibiotics mixture exposure 0 1 and 100 ug/L using a HTS approach coupled with advanced bioinformatic tools.		C0 2	C0 2	strain:AB\|isolate:C0\|breed:not applicable\|cultivar:not applicable\|ecotype:not applicable\|age:not applicable\|dev stage:not applicable\|sex:female\|tissue:ovary\|collection date:2019 11 01\|geo loc name:China: Shenzhen Guangdong\|replicate:biological replicate 2\|BioSampleModel:Model organism or animal	RNA seq of zebrafish	C0 220200320	C0 220200320	RNA seq of zebrafish in different conditions	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	BGISEQ	BGISEQ-500	SRP253408	C0_2_2.fq.gz C0_2_1.fq.gz	fastq fastq	6819326400.0	45462176.0	C0 2 1.fq.gz	0:150 1:150	A:1837661215;C:1571877614;G:1550458835;T:1859103408;N:225328	150	150	1837661215	1571877614	1550458835	1859103408	225328	SRX7957242	SRS6343349	SRA1056819	Southern University of Science and Technology\|School of Environmental Science and Engineering	Southern University of Science and Technology	1	0.93697		0.0339		0.74793		0.5035		150		B		usable mapping rate	bgi	bgi	unknown	random_priming	unknown	bulk	unknown	unknown	China	2020-03-20	Undetermined	Adult	Gonad	Reproductive System
58541	58541	SRR11355395	SRX7957241	SRS6343348	SRP253408	PRJNA613558	Transcriptomic assessments RNA sequencing in ovaries following treatments of gravid female zebrafish to an antibiotic mixture	PRJNA613558	Other	As the use of antimicrobials during pregnancy and the perinatal period may lead to adverse outcomes such as miscarriages and newborn disease the purpose of present study was to evaluate the influence of antibiotic exposure in offspring following treatments of gravid female zebrafish to an antibiotic mixture. For the F0 generation adult zebrafish AB strain at sexual maturity 150 dpf dpf were selected for experimentation 50% male and 50% pregnant female. Given a significant change occurred in eggs production and F1 survival at birth in present study combined with antibiotics bioaccumulated in ovary we suspect that antibiotic exposure might impact the ovary of F0 generation zebrafish and thus affect egg production and survival. Therefore ovaries of the F0 generation were evaluated for transcriptional effects in different antibiotics mixture exposure 0 1 and 100 ug/L using a HTS approach coupled with advanced bioinformatic tools.		C0 1	C0 1	strain:AB\|isolate:C0\|breed:not applicable\|cultivar:not applicable\|ecotype:not applicable\|age:not applicable\|dev stage:not applicable\|sex:female\|tissue:ovary\|collection date:2019 11 01\|geo loc name:China: Shenzhen Guangdong\|replicate:biological replicate 1\|BioSampleModel:Model organism or animal	RNA seq of zebrafish	C0 120200319	C0 120200319	RNA seq of zebrafish in different conditions	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	BGISEQ	BGISEQ-500	SRP253408	C0_1_1.fq.gz C0_1_2.fq.gz	fastq fastq	7030804800.0	46872032.0	C0 1 1.fq.gz	0:150 1:150	A:1891469955;C:1624531422;G:1603124564;T:1911444454;N:234405	150	150	1891469955	1624531422	1603124564	1911444454	234405	SRX7957241	SRS6343348	SRA1056819	Southern University of Science and Technology\|School of Environmental Science and Engineering	Southern University of Science and Technology	1	0.93519		0.0328		0.74602		0.48272		150		B		usable mapping rate	bgi	bgi	unknown	random_priming	unknown	bulk	unknown	unknown	China	2020-03-20	Undetermined	Adult	Gonad	Reproductive System
76464	76464	SRR24957216	SRX20715257	SRS18006806	SRP444571	PRJNA984937	Danio rerio Raw sequence reads	PRJNA984937	Whole Genome Sequencing	To further elucidate the mechanism of ovulatory dysfunction in the cyp21a2 gene knockout model we first performed a transcriptome analysis on the ovaries.			WT1	strain:not collected\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:not collected\|age:4 to 5 mpf\|collection date:not collected\|geo loc name:China\|sex:female\|tissue:ovary\|replicate:biological replicate 1\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: female	WT1	WT1	355bp	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP444571	WT_3_1.fq.gz WT_3_2.fq.gz	fastq fastq	7193246700.0	23977489.0	WT 3 1.fq.gz	0:150 1:150	A:1899215463;C:1704365793;G:1700125063;T:1889255858;N:284523	150	150	1899215463	1704365793	1700125063	1889255858	284523	SRX20715257	SRS18006806	SRA1657875	Chinese Academy of Fishery Sciences\|Chinese Academy of Fishery Sciences	Chinese Academy of Fishery Sciences	2	0.96018	0.95972	0.02154	0.02156	0.74783	0.74752	0.47659	0.4779	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2023-06-19	Adult	Adult	Gonad	Reproductive System
76465	76465	SRR24957217	SRX20715256	SRS18006805	SRP444571	PRJNA984937	Danio rerio Raw sequence reads	PRJNA984937	Whole Genome Sequencing	To further elucidate the mechanism of ovulatory dysfunction in the cyp21a2 gene knockout model we first performed a transcriptome analysis on the ovaries.			WT2	strain:not collected\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:not collected\|age:4 to 5 mpf\|collection date:not collected\|geo loc name:China\|sex:female\|tissue:ovary\|replicate:biological replicate 2\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: female	WT2	WT2	354bp	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP444571	WT_2_1.fq.gz WT_2_2.fq.gz	fastq fastq	6692745000.0	22309150.0	WT 2 1.fq.gz	0:150 1:150	A:1754867143;C:1599183933;G:1593183572;T:1745248372;N:261980	150	150	1754867143	1599183933	1593183572	1745248372	261980	SRX20715256	SRS18006805	SRA1657875	Chinese Academy of Fishery Sciences\|Chinese Academy of Fishery Sciences	Chinese Academy of Fishery Sciences	2	0.95144	0.95135	0.02095	0.02093	0.74783	0.74797	0.47881	0.48019	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2023-06-19	Adult	Adult	Gonad	Reproductive System
76466	76466	SRR24957218	SRX20715255	SRS18006804	SRP444571	PRJNA984937	Danio rerio Raw sequence reads	PRJNA984937	Whole Genome Sequencing	To further elucidate the mechanism of ovulatory dysfunction in the cyp21a2 gene knockout model we first performed a transcriptome analysis on the ovaries.			WT3	strain:not collected\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:not collected\|age:4 to 5 mpf\|collection date:not collected\|geo loc name:China\|sex:female\|tissue:ovary\|replicate:biological replicate 3\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: female	WT3	WT3	353bp	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP444571	WT_1_1.fq.gz WT_1_2.fq.gz	fastq fastq	6063572400.0	20211908.0	WT 1 1.fq.gz	0:150 1:150	A:1587049845;C:1452167103;G:1446522880;T:1577597629;N:234943	150	150	1587049845	1452167103	1446522880	1577597629	234943	SRX20715255	SRS18006804	SRA1657875	Chinese Academy of Fishery Sciences\|Chinese Academy of Fishery Sciences	Chinese Academy of Fishery Sciences	2	0.95503	0.95566	0.0198	0.0198	0.75189	0.75205	0.48404	0.48544	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2023-06-19	Adult	Adult	Gonad	Reproductive System
76467	76467	SRR24957219	SRX20715254	SRS18006803	SRP444571	PRJNA984937	Danio rerio Raw sequence reads	PRJNA984937	Whole Genome Sequencing	To further elucidate the mechanism of ovulatory dysfunction in the cyp21a2 gene knockout model we first performed a transcriptome analysis on the ovaries.			cyp21a2 1	strain:not collected\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:not collected\|age:4 to 5 mpf\|collection date:not collected\|geo loc name:China\|sex:female\|tissue:ovary\|replicate:biological replicate 4\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: female	cyp21a2 1	cyp21a2 1	352bp	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP444571	cyp21a_3_1.fq.gz cyp21a_3_2.fq.gz	fastq fastq	6995989200.0	23319964.0	cyp21a 3 1.fq.gz	0:150 1:150	A:1835165397;C:1669847288;G:1667209860;T:1823520176;N:246479	150	150	1835165397	1669847288	1667209860	1823520176	246479	SRX20715254	SRS18006803	SRA1657875	Chinese Academy of Fishery Sciences\|Chinese Academy of Fishery Sciences	Chinese Academy of Fishery Sciences	2	0.95816	0.95833	0.02281	0.02265	0.74823	0.7487	0.47417	0.47569	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2023-06-19	Adult	Adult	Gonad	Reproductive System
76468	76468	SRR24957220	SRX20715253	SRS18006802	SRP444571	PRJNA984937	Danio rerio Raw sequence reads	PRJNA984937	Whole Genome Sequencing	To further elucidate the mechanism of ovulatory dysfunction in the cyp21a2 gene knockout model we first performed a transcriptome analysis on the ovaries.			cyp21a2 2	strain:not collected\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:not collected\|age:4 to 5 mpf\|collection date:not collected\|geo loc name:China\|sex:female\|tissue:ovary\|replicate:biological replicate 5\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: female	cyp21a2 2	cyp21a2 2	351bp	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP444571	cyp21a_2_1.fq.gz cyp21a_2_2.fq.gz	fastq fastq	7468139100.0	24893797.0	cyp21a 2 1.fq.gz	0:150 1:150	A:1948988233;C:1794014163;G:1789429610;T:1935404071;N:303023	150	150	1948988233	1794014163	1789429610	1935404071	303023	SRX20715253	SRS18006802	SRA1657875	Chinese Academy of Fishery Sciences\|Chinese Academy of Fishery Sciences	Chinese Academy of Fishery Sciences	2	0.95662	0.95647	0.01866	0.01855	0.75067	0.75043	0.48064	0.48347	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2023-06-19	Adult	Adult	Gonad	Reproductive System
76469	76469	SRR24957221	SRX20715252	SRS18006801	SRP444571	PRJNA984937	Danio rerio Raw sequence reads	PRJNA984937	Whole Genome Sequencing	To further elucidate the mechanism of ovulatory dysfunction in the cyp21a2 gene knockout model we first performed a transcriptome analysis on the ovaries.			cyp21a2 3	strain:not collected\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:not collected\|age:4 to 5 mpf\|collection date:not collected\|geo loc name:China\|sex:female\|tissue:ovary\|replicate:biological replicate 6\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: female	cyp21a2 3	cyp21a2 3	350bp	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP444571	cyp21a_1_1.fq.gz cyp21a_1_2.fq.gz	fastq fastq	6687974400.0	22293248.0	cyp21a 1 1.fq.gz	0:150 1:150	A:1760782650;C:1592288096;G:1584534831;T:1750325587;N:43236	150	150	1760782650	1592288096	1584534831	1750325587	43236	SRX20715252	SRS18006801	SRA1657875	Chinese Academy of Fishery Sciences\|Chinese Academy of Fishery Sciences	Chinese Academy of Fishery Sciences	2	0.95394	0.95415	0.02019	0.0204	0.74921	0.74834	0.47901	0.47809	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2023-06-19	Adult	Adult	Gonad	Reproductive System

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;