metadata: run_metadata: 106 rows where experiment.library_selection = "RANDOM PCR", experiment.library_strategy = "RNA-Seq" and tissue_curation

106 rows where experiment.library_selection = "RANDOM PCR", experiment.library_strategy = "RNA-Seq" and tissue_curation_coarse = "All anatomical structures"

descending

Link	rowid ▼	run.accession	experiment.accession	sample.accession	study.accession	bioproject	study.title	study.alias	study.type	study.abstract	study.attributes	sample.description	sample.title	sample.alias	sample.centername	sample.attributes	experiment.title	experiment.alias	experiment.library_name	experiment.design_description	experiment.library_construction_protocol	experiment.attributes	experiment.library_strategy	experiment.library_source	experiment.library_selection	experiment.library_layout	experiment.platform	experiment.instrument_model	experiment.spot_descriptor	experiment.study_ref	run.title	run.attributes	run.filename	run.semantic_name	run.total_bases	run.total_spots	run.alias	run.read_lengths	run.base_counts	run.r1_length	run.r2_length	run.Acount	run.Ccount	run.Gcount	run.Tcount	run.Ncount	run.experiment	run.pool_member	submission.accession	submission.srasource	submission.bioprojectsource	seqdetective.n_mates	seqdetective.mapping_rate.mate1	seqdetective.mapping_rate.mate2	seqdetective.nofeature_rate.mate1	seqdetective.nofeature_rate.mate2	seqdetective.sparsity.mate1	seqdetective.sparsity.mate2	seqdetective.pos_strand_rate.mate1	seqdetective.pos_strand_rate.mate2	seqdetective.readlen.mate1	seqdetective.readlen.mate2	seqdetective.judgement.mate1	seqdetective.judgement.mate2	seqdetective.judgement.reason	platform_family	instrument_generation	read_bias	selection_class	prep_kit	sc_or_bulk	tech_class	technology	submission.bioprojectsource.country	earliest_date	devstage_curation	devstage_curation_coarse	tissue_curation	tissue_curation_coarse
10111	10111	ERR4911024	ERX4777847	ERS5435613	ERP125516	PRJEB41701	RNA seq of zebrafish primordial germ cells and somatic cells during early embryogenesis	E-MTAB-9857	Transcriptome Analysis	In this rescue experiment embryos were injected with a Tdrd7 targeting morpholino to block translation of tdrd7 RNA and simultaneously provided with a Tdrd7 morpholino resistant RNA.	ENA FIRST PUBLIC:2020 12 24\|ENA LAST UPDATE:2020 12 02	Protocols: Zebrafish PGCs were isolated via FACS post embryo dissociation. The embryos were grown until the desired stage at 28.5C and collected in synchronous batches. Cell dissociation occurred via pipetting thoroughly up and down the pooled embryos until the solution appeared homogeneous. Yolk excess was removed by two rounds of centrifugation at 300 x g 5 minutes. Cells were passed through a 50 μm mesh and loaded into a FACS Aria II machine for cell sorting. Morpholino antisense oligos were used in order to inhibit Tdrd7 translation during zebrafish development. Stock morpholinos were diluted in phenol red and about 0.3 pM were injected into the yolk of a fertilised zebrafish embryo. As experimental control a group of embryos were injected with morpholinos having 5 mismatches for the target Tdrd7 transcript. A rescue experiment was performed with Tdrd7 MO resistant RNA from tdrd7 transcript. The RNA was in vitro transcribed and co injected in once cell embryo to rescue MO mediated Tdrd7 KD. Cells were lysed in presence of RNAse inhibitor 0.2 U/μl and cDNA generated from the cell lysate. cDNA was generated with the Takara SMART Seq® v4 Ultra® Low Input RNA Kit as from manufacturer's instruction. In brief reverse transcription was carried out in presence of the SMART Seq CDS Primer II A and SMARTScribeTM Reverse Transcriptase Takara Bio Europe 634889 France. Library amplification occurred according to protocol recommendations and the amplified cDNA purified via the Agencourt AMPure XP beads kit Beckman Coulter A63880 USA.	PGC Rescue rep2	SAMEA7678632	MRC London Institute of Medical Sciences and Faculty of Medicine, Imperial College, London, UK	ENA first public:2020 12 24\|ENA last update:2020 12 02\|External Id:SAMEA7678632\|INSDC center alias:MRC London Institute of Medical Sciences and Faculty of Medicine Imperial College London UK\|INSDC center name:MRC London Institute of Medical Sciences and Faculty of Medicine Imperial College London UK\|INSDC first public:2020 12 24T04:05:28Z\|INSDC last update:2020 12 02T17:13:26Z\|INSDC status:public\|Submitter Id:E MTAB 9857:PGC Rescue rep2\|age:24\|broker name:ArrayExpress\|cell type:primordial germ cell\|common name:zebrafish\|developmental stage:pharyngula prim 5\|genotype:tgbuc:gfp\|sample name:E MTAB 9857:PGC Rescue rep2\|strain:AB	NextSeq 550 paired end sequencing; RNA seq of zebrafish primordial germ cells and somatic cells during early embryogenesis	E MTAB 9857:PGC Rescue rep2 p	PGC Rescue rep2 p	RNA seq of zebrafish primordial germ cells and somatic cells during early embryogenesis	Zebrafish PGCs were isolated via FACS post embryo dissociation. The embryos were grown until the desired stage at 28.5C and collected in synchronous batches. Cell dissociation occurred via pipetting thoroughly up and down the pooled embryos until the solution appeared homogeneous. Yolk excess was removed by two rounds of centrifugation at 300 x g 5 minutes. Cells were passed through a 50 μm mesh and loaded into a FACS Aria II machine for cell sorting. Morpholino antisense oligos were used in order to inhibit Tdrd7 translation during zebrafish development. Stock morpholinos were diluted in phenol red and about 0.3 pM were injected into the yolk of a fertilised zebrafish embryo. As experimental control a group of embryos were injected with morpholinos having 5 mismatches for the target Tdrd7 transcript. A rescue experiment was performed with Tdrd7 MO resistant RNA from tdrd7 transcript. The RNA was in vitro transcribed and co injected in once cell embryo to rescue MO mediated Tdrd7 KD. Cells were lysed in presence of RNAse inhibitor 0.2 U/μl and cDNA generated from the cell lysate. cDNA was generated with the Takara SMART Seq® v4 Ultra® Low Input RNA Kit as from manufacturer's instruction. In brief reverse transcription was carried out in presence of the SMART Seq CDS Primer II A and SMARTScribeTM Reverse Transcriptase Takara Bio Europe 634889 France. Library amplification occurred according to protocol recommendations and the amplified cDNA purified via the Agencourt AMPure XP beads kit Beckman Coulter A63880 USA.	Experimental Factor: compound:tdrd7 MO + tdrd7 rescue RNA	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	NextSeq 550		ERP125516	NextSeq 550 paired end sequencing; RNA seq of zebrafish primordial germ cells and somatic cells during early embryogenesis	ENA FIRST PUBLIC:2020 12 24\|ENA LAST UPDATE:2020 12 09	Tdrd7_Rescue_PGC_rep2_R1.fastq.gz Tdrd7_Rescue_PGC_rep2_R2.fastq.gz	fastq fastq	6487121744.0	43103086.0	E MTAB 9857:Tdrd7 Rescue PGC rep2 R	0:75.26 1:75.24	A:1769293880;C:1469053016;G:1516553427;T:1729496045;N:2725376	75	75	1769293880	1469053016	1516553427	1729496045	2725376	ERX4777847	ERS5435613	ERA3184570	MRC London Institute of Medical Sciences and Faculty of Medicine, Imperial College, London, UK\|European Nucleotide Archive	MRC London Institute of Medical Sciences and Faculty of Medicine, Imperial College, London, UK\|European Nucleotide Archive	2	0.95185	0.95349	0.04302	0.04315	0.72829	0.73022	0.47176	0.47104	75	76	B	B	biological fallback assumption	illumina	nextseq	unknown	random_priming	unknown	sc	single_cell_plate	smartseq	United Kingdom	2020-12-02	Pharyngula	Embryo	Whole Organism	All anatomical structures
10112	10112	ERR4911023	ERX4777846	ERS5435612	ERP125516	PRJEB41701	RNA seq of zebrafish primordial germ cells and somatic cells during early embryogenesis	E-MTAB-9857	Transcriptome Analysis	In this rescue experiment embryos were injected with a Tdrd7 targeting morpholino to block translation of tdrd7 RNA and simultaneously provided with a Tdrd7 morpholino resistant RNA.	ENA FIRST PUBLIC:2020 12 24\|ENA LAST UPDATE:2020 12 02	Protocols: Zebrafish PGCs were isolated via FACS post embryo dissociation. The embryos were grown until the desired stage at 28.5C and collected in synchronous batches. Cell dissociation occurred via pipetting thoroughly up and down the pooled embryos until the solution appeared homogeneous. Yolk excess was removed by two rounds of centrifugation at 300 x g 5 minutes. Cells were passed through a 50 μm mesh and loaded into a FACS Aria II machine for cell sorting. Morpholino antisense oligos were used in order to inhibit Tdrd7 translation during zebrafish development. Stock morpholinos were diluted in phenol red and about 0.3 pM were injected into the yolk of a fertilised zebrafish embryo. As experimental control a group of embryos were injected with morpholinos having 5 mismatches for the target Tdrd7 transcript. A rescue experiment was performed with Tdrd7 MO resistant RNA from tdrd7 transcript. The RNA was in vitro transcribed and co injected in once cell embryo to rescue MO mediated Tdrd7 KD. Cells were lysed in presence of RNAse inhibitor 0.2 U/μl and cDNA generated from the cell lysate. cDNA was generated with the Takara SMART Seq® v4 Ultra® Low Input RNA Kit as from manufacturer's instruction. In brief reverse transcription was carried out in presence of the SMART Seq CDS Primer II A and SMARTScribeTM Reverse Transcriptase Takara Bio Europe 634889 France. Library amplification occurred according to protocol recommendations and the amplified cDNA purified via the Agencourt AMPure XP beads kit Beckman Coulter A63880 USA.	PGC Rescue rep1	SAMEA7678631	MRC London Institute of Medical Sciences and Faculty of Medicine, Imperial College, London, UK	ENA first public:2020 12 24\|ENA last update:2020 12 02\|External Id:SAMEA7678631\|INSDC center alias:MRC London Institute of Medical Sciences and Faculty of Medicine Imperial College London UK\|INSDC center name:MRC London Institute of Medical Sciences and Faculty of Medicine Imperial College London UK\|INSDC first public:2020 12 24T04:05:28Z\|INSDC last update:2020 12 02T17:13:26Z\|INSDC status:public\|Submitter Id:E MTAB 9857:PGC Rescue rep1\|age:24\|broker name:ArrayExpress\|cell type:primordial germ cell\|common name:zebrafish\|developmental stage:pharyngula prim 5\|genotype:tgbuc:gfp\|sample name:E MTAB 9857:PGC Rescue rep1\|strain:AB	NextSeq 550 paired end sequencing; RNA seq of zebrafish primordial germ cells and somatic cells during early embryogenesis	E MTAB 9857:PGC Rescue rep1 p	PGC Rescue rep1 p	RNA seq of zebrafish primordial germ cells and somatic cells during early embryogenesis	Zebrafish PGCs were isolated via FACS post embryo dissociation. The embryos were grown until the desired stage at 28.5C and collected in synchronous batches. Cell dissociation occurred via pipetting thoroughly up and down the pooled embryos until the solution appeared homogeneous. Yolk excess was removed by two rounds of centrifugation at 300 x g 5 minutes. Cells were passed through a 50 μm mesh and loaded into a FACS Aria II machine for cell sorting. Morpholino antisense oligos were used in order to inhibit Tdrd7 translation during zebrafish development. Stock morpholinos were diluted in phenol red and about 0.3 pM were injected into the yolk of a fertilised zebrafish embryo. As experimental control a group of embryos were injected with morpholinos having 5 mismatches for the target Tdrd7 transcript. A rescue experiment was performed with Tdrd7 MO resistant RNA from tdrd7 transcript. The RNA was in vitro transcribed and co injected in once cell embryo to rescue MO mediated Tdrd7 KD. Cells were lysed in presence of RNAse inhibitor 0.2 U/μl and cDNA generated from the cell lysate. cDNA was generated with the Takara SMART Seq® v4 Ultra® Low Input RNA Kit as from manufacturer's instruction. In brief reverse transcription was carried out in presence of the SMART Seq CDS Primer II A and SMARTScribeTM Reverse Transcriptase Takara Bio Europe 634889 France. Library amplification occurred according to protocol recommendations and the amplified cDNA purified via the Agencourt AMPure XP beads kit Beckman Coulter A63880 USA.	Experimental Factor: compound:tdrd7 MO + tdrd7 rescue RNA	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	NextSeq 550		ERP125516	NextSeq 550 paired end sequencing; RNA seq of zebrafish primordial germ cells and somatic cells during early embryogenesis	ENA FIRST PUBLIC:2020 12 24\|ENA LAST UPDATE:2020 12 09	Tdrd7_Rescue_PGC_rep1_R1.fastq.gz Tdrd7_Rescue_PGC_rep1_R2.fastq.gz	fastq fastq	5952473889.0	39454929.0	E MTAB 9857:Tdrd7 Rescue PGC rep1 R	0:75.44 1:75.43	A:1640467527;C:1332668425;G:1380033115;T:1597665169;N:1639653	75	75	1640467527	1332668425	1380033115	1597665169	1639653	ERX4777846	ERS5435612	ERA3184570	MRC London Institute of Medical Sciences and Faculty of Medicine, Imperial College, London, UK\|European Nucleotide Archive	MRC London Institute of Medical Sciences and Faculty of Medicine, Imperial College, London, UK\|European Nucleotide Archive	2	0.95086	0.95226	0.06292	0.0629	0.70341	0.70579	0.46524	0.46691	75	76	B	B	biological fallback assumption	illumina	nextseq	unknown	random_priming	unknown	sc	single_cell_plate	smartseq	United Kingdom	2020-12-02	Pharyngula	Embryo	Whole Organism	All anatomical structures
10113	10113	ERR4911022	ERX4777845	ERS5435611	ERP125516	PRJEB41701	RNA seq of zebrafish primordial germ cells and somatic cells during early embryogenesis	E-MTAB-9857	Transcriptome Analysis	In this rescue experiment embryos were injected with a Tdrd7 targeting morpholino to block translation of tdrd7 RNA and simultaneously provided with a Tdrd7 morpholino resistant RNA.	ENA FIRST PUBLIC:2020 12 24\|ENA LAST UPDATE:2020 12 02	Protocols: Zebrafish PGCs were isolated via FACS post embryo dissociation. The embryos were grown until the desired stage at 28.5C and collected in synchronous batches. Cell dissociation occurred via pipetting thoroughly up and down the pooled embryos until the solution appeared homogeneous. Yolk excess was removed by two rounds of centrifugation at 300 x g 5 minutes. Cells were passed through a 50 μm mesh and loaded into a FACS Aria II machine for cell sorting. Morpholino antisense oligos were used in order to inhibit Tdrd7 translation during zebrafish development. Stock morpholinos were diluted in phenol red and about 0.3 pM were injected into the yolk of a fertilised zebrafish embryo. As experimental control a group of embryos were injected with morpholinos having 5 mismatches for the target Tdrd7 transcript. A rescue experiment was performed with Tdrd7 MO resistant RNA from tdrd7 transcript. The RNA was in vitro transcribed and co injected in once cell embryo to rescue MO mediated Tdrd7 KD. Cells were lysed in presence of RNAse inhibitor 0.2 U/μl and cDNA generated from the cell lysate. cDNA was generated with the Takara SMART Seq® v4 Ultra® Low Input RNA Kit as from manufacturer's instruction. In brief reverse transcription was carried out in presence of the SMART Seq CDS Primer II A and SMARTScribeTM Reverse Transcriptase Takara Bio Europe 634889 France. Library amplification occurred according to protocol recommendations and the amplified cDNA purified via the Agencourt AMPure XP beads kit Beckman Coulter A63880 USA.	PGC MO rep2	SAMEA7678630	MRC London Institute of Medical Sciences and Faculty of Medicine, Imperial College, London, UK	ENA first public:2020 12 24\|ENA last update:2020 12 02\|External Id:SAMEA7678630\|INSDC center alias:MRC London Institute of Medical Sciences and Faculty of Medicine Imperial College London UK\|INSDC center name:MRC London Institute of Medical Sciences and Faculty of Medicine Imperial College London UK\|INSDC first public:2020 12 24T04:05:28Z\|INSDC last update:2020 12 02T17:13:26Z\|INSDC status:public\|Submitter Id:E MTAB 9857:PGC MO rep2\|age:24\|broker name:ArrayExpress\|cell type:primordial germ cell\|common name:zebrafish\|developmental stage:pharyngula prim 5\|genotype:tgbuc:gfp\|sample name:E MTAB 9857:PGC MO rep2\|strain:AB	NextSeq 550 paired end sequencing; RNA seq of zebrafish primordial germ cells and somatic cells during early embryogenesis	E MTAB 9857:PGC MO rep2 p	PGC MO rep2 p	RNA seq of zebrafish primordial germ cells and somatic cells during early embryogenesis	Zebrafish PGCs were isolated via FACS post embryo dissociation. The embryos were grown until the desired stage at 28.5C and collected in synchronous batches. Cell dissociation occurred via pipetting thoroughly up and down the pooled embryos until the solution appeared homogeneous. Yolk excess was removed by two rounds of centrifugation at 300 x g 5 minutes. Cells were passed through a 50 μm mesh and loaded into a FACS Aria II machine for cell sorting. Morpholino antisense oligos were used in order to inhibit Tdrd7 translation during zebrafish development. Stock morpholinos were diluted in phenol red and about 0.3 pM were injected into the yolk of a fertilised zebrafish embryo. As experimental control a group of embryos were injected with morpholinos having 5 mismatches for the target Tdrd7 transcript. A rescue experiment was performed with Tdrd7 MO resistant RNA from tdrd7 transcript. The RNA was in vitro transcribed and co injected in once cell embryo to rescue MO mediated Tdrd7 KD. Cells were lysed in presence of RNAse inhibitor 0.2 U/μl and cDNA generated from the cell lysate. cDNA was generated with the Takara SMART Seq® v4 Ultra® Low Input RNA Kit as from manufacturer's instruction. In brief reverse transcription was carried out in presence of the SMART Seq CDS Primer II A and SMARTScribeTM Reverse Transcriptase Takara Bio Europe 634889 France. Library amplification occurred according to protocol recommendations and the amplified cDNA purified via the Agencourt AMPure XP beads kit Beckman Coulter A63880 USA.	Experimental Factor: compound:tdrd7 targeting MO	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	NextSeq 550		ERP125516	NextSeq 550 paired end sequencing; RNA seq of zebrafish primordial germ cells and somatic cells during early embryogenesis	ENA FIRST PUBLIC:2020 12 24\|ENA LAST UPDATE:2020 12 09	Tdrd7_MO_PGC_rep2_R1.fastq.gz Tdrd7_MO_PGC_rep2_R2.fastq.gz	fastq fastq	906443913.0	6069224.0	E MTAB 9857:Tdrd7 MO PGC rep2 R	0:74.67 1:74.68	A:256935983;C:195137600;G:200975999;T:253026767;N:367564	74	74	256935983	195137600	200975999	253026767	367564	ERX4777845	ERS5435611	ERA3184570	MRC London Institute of Medical Sciences and Faculty of Medicine, Imperial College, London, UK\|European Nucleotide Archive	MRC London Institute of Medical Sciences and Faculty of Medicine, Imperial College, London, UK\|European Nucleotide Archive	2	0.93468	0.93603	0.09796	0.09848	0.7119	0.71439	0.48682	0.48933	75	76	B	B	biological fallback assumption	illumina	nextseq	unknown	random_priming	unknown	sc	single_cell_plate	smartseq	United Kingdom	2020-12-02	Pharyngula	Embryo	Whole Organism	All anatomical structures
10114	10114	ERR4911021	ERX4777844	ERS5435610	ERP125516	PRJEB41701	RNA seq of zebrafish primordial germ cells and somatic cells during early embryogenesis	E-MTAB-9857	Transcriptome Analysis	In this rescue experiment embryos were injected with a Tdrd7 targeting morpholino to block translation of tdrd7 RNA and simultaneously provided with a Tdrd7 morpholino resistant RNA.	ENA FIRST PUBLIC:2020 12 24\|ENA LAST UPDATE:2020 12 02	Protocols: Zebrafish PGCs were isolated via FACS post embryo dissociation. The embryos were grown until the desired stage at 28.5C and collected in synchronous batches. Cell dissociation occurred via pipetting thoroughly up and down the pooled embryos until the solution appeared homogeneous. Yolk excess was removed by two rounds of centrifugation at 300 x g 5 minutes. Cells were passed through a 50 μm mesh and loaded into a FACS Aria II machine for cell sorting. Morpholino antisense oligos were used in order to inhibit Tdrd7 translation during zebrafish development. Stock morpholinos were diluted in phenol red and about 0.3 pM were injected into the yolk of a fertilised zebrafish embryo. As experimental control a group of embryos were injected with morpholinos having 5 mismatches for the target Tdrd7 transcript. A rescue experiment was performed with Tdrd7 MO resistant RNA from tdrd7 transcript. The RNA was in vitro transcribed and co injected in once cell embryo to rescue MO mediated Tdrd7 KD. Cells were lysed in presence of RNAse inhibitor 0.2 U/μl and cDNA generated from the cell lysate. cDNA was generated with the Takara SMART Seq® v4 Ultra® Low Input RNA Kit as from manufacturer's instruction. In brief reverse transcription was carried out in presence of the SMART Seq CDS Primer II A and SMARTScribeTM Reverse Transcriptase Takara Bio Europe 634889 France. Library amplification occurred according to protocol recommendations and the amplified cDNA purified via the Agencourt AMPure XP beads kit Beckman Coulter A63880 USA.	PGC MO rep1	SAMEA7678629	MRC London Institute of Medical Sciences and Faculty of Medicine, Imperial College, London, UK	ENA first public:2020 12 24\|ENA last update:2020 12 02\|External Id:SAMEA7678629\|INSDC center alias:MRC London Institute of Medical Sciences and Faculty of Medicine Imperial College London UK\|INSDC center name:MRC London Institute of Medical Sciences and Faculty of Medicine Imperial College London UK\|INSDC first public:2020 12 24T04:05:28Z\|INSDC last update:2020 12 02T17:13:26Z\|INSDC status:public\|Submitter Id:E MTAB 9857:PGC MO rep1\|age:24\|broker name:ArrayExpress\|cell type:primordial germ cell\|common name:zebrafish\|developmental stage:pharyngula prim 5\|genotype:tgbuc:gfp\|sample name:E MTAB 9857:PGC MO rep1\|strain:AB	NextSeq 550 paired end sequencing; RNA seq of zebrafish primordial germ cells and somatic cells during early embryogenesis	E MTAB 9857:PGC MO rep1 p	PGC MO rep1 p	RNA seq of zebrafish primordial germ cells and somatic cells during early embryogenesis	Zebrafish PGCs were isolated via FACS post embryo dissociation. The embryos were grown until the desired stage at 28.5C and collected in synchronous batches. Cell dissociation occurred via pipetting thoroughly up and down the pooled embryos until the solution appeared homogeneous. Yolk excess was removed by two rounds of centrifugation at 300 x g 5 minutes. Cells were passed through a 50 μm mesh and loaded into a FACS Aria II machine for cell sorting. Morpholino antisense oligos were used in order to inhibit Tdrd7 translation during zebrafish development. Stock morpholinos were diluted in phenol red and about 0.3 pM were injected into the yolk of a fertilised zebrafish embryo. As experimental control a group of embryos were injected with morpholinos having 5 mismatches for the target Tdrd7 transcript. A rescue experiment was performed with Tdrd7 MO resistant RNA from tdrd7 transcript. The RNA was in vitro transcribed and co injected in once cell embryo to rescue MO mediated Tdrd7 KD. Cells were lysed in presence of RNAse inhibitor 0.2 U/μl and cDNA generated from the cell lysate. cDNA was generated with the Takara SMART Seq® v4 Ultra® Low Input RNA Kit as from manufacturer's instruction. In brief reverse transcription was carried out in presence of the SMART Seq CDS Primer II A and SMARTScribeTM Reverse Transcriptase Takara Bio Europe 634889 France. Library amplification occurred according to protocol recommendations and the amplified cDNA purified via the Agencourt AMPure XP beads kit Beckman Coulter A63880 USA.	Experimental Factor: compound:tdrd7 targeting MO	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	NextSeq 550		ERP125516	NextSeq 550 paired end sequencing; RNA seq of zebrafish primordial germ cells and somatic cells during early embryogenesis	ENA FIRST PUBLIC:2020 12 24\|ENA LAST UPDATE:2020 12 09	Tdrd7_MO_PGC_rep1_R1.fastq.gz Tdrd7_MO_PGC_rep1_R2.fastq.gz	fastq fastq	1078919524.0	7241200.0	E MTAB 9857:Tdrd7 MO PGC rep1 R	0:74.50 1:74.50	A:308200726;C:229836659;G:236649504;T:303673221;N:559414	74	74	308200726	229836659	236649504	303673221	559414	ERX4777844	ERS5435610	ERA3184570	MRC London Institute of Medical Sciences and Faculty of Medicine, Imperial College, London, UK\|European Nucleotide Archive	MRC London Institute of Medical Sciences and Faculty of Medicine, Imperial College, London, UK\|European Nucleotide Archive	2	0.938	0.93748	0.10463	0.10431	0.7077	0.70999	0.48098	0.48239	75	76	B	B	biological fallback assumption	illumina	nextseq	unknown	random_priming	unknown	sc	single_cell_plate	smartseq	United Kingdom	2020-12-02	Pharyngula	Embryo	Whole Organism	All anatomical structures
10115	10115	ERR4911020	ERX4777843	ERS5435609	ERP125516	PRJEB41701	RNA seq of zebrafish primordial germ cells and somatic cells during early embryogenesis	E-MTAB-9857	Transcriptome Analysis	In this rescue experiment embryos were injected with a Tdrd7 targeting morpholino to block translation of tdrd7 RNA and simultaneously provided with a Tdrd7 morpholino resistant RNA.	ENA FIRST PUBLIC:2020 12 24\|ENA LAST UPDATE:2020 12 02	Protocols: Zebrafish PGCs were isolated via FACS post embryo dissociation. The embryos were grown until the desired stage at 28.5C and collected in synchronous batches. Cell dissociation occurred via pipetting thoroughly up and down the pooled embryos until the solution appeared homogeneous. Yolk excess was removed by two rounds of centrifugation at 300 x g 5 minutes. Cells were passed through a 50 μm mesh and loaded into a FACS Aria II machine for cell sorting. Morpholino antisense oligos were used in order to inhibit Tdrd7 translation during zebrafish development. Stock morpholinos were diluted in phenol red and about 0.3 pM were injected into the yolk of a fertilised zebrafish embryo. As experimental control a group of embryos were injected with morpholinos having 5 mismatches for the target Tdrd7 transcript. A rescue experiment was performed with Tdrd7 MO resistant RNA from tdrd7 transcript. The RNA was in vitro transcribed and co injected in once cell embryo to rescue MO mediated Tdrd7 KD. Cells were lysed in presence of RNAse inhibitor 0.2 U/μl and cDNA generated from the cell lysate. cDNA was generated with the Takara SMART Seq® v4 Ultra® Low Input RNA Kit as from manufacturer's instruction. In brief reverse transcription was carried out in presence of the SMART Seq CDS Primer II A and SMARTScribeTM Reverse Transcriptase Takara Bio Europe 634889 France. Library amplification occurred according to protocol recommendations and the amplified cDNA purified via the Agencourt AMPure XP beads kit Beckman Coulter A63880 USA.	PGC 5mm rep2	SAMEA7678628	MRC London Institute of Medical Sciences and Faculty of Medicine, Imperial College, London, UK	ENA first public:2020 12 24\|ENA last update:2020 12 02\|External Id:SAMEA7678628\|INSDC center alias:MRC London Institute of Medical Sciences and Faculty of Medicine Imperial College London UK\|INSDC center name:MRC London Institute of Medical Sciences and Faculty of Medicine Imperial College London UK\|INSDC first public:2020 12 24T04:05:28Z\|INSDC last update:2020 12 02T17:13:26Z\|INSDC status:public\|Submitter Id:E MTAB 9857:PGC 5mm rep2\|age:24\|broker name:ArrayExpress\|cell type:primordial germ cell\|common name:zebrafish\|developmental stage:pharyngula prim 5\|genotype:tgbuc:gfp\|sample name:E MTAB 9857:PGC 5mm rep2\|strain:AB	NextSeq 550 paired end sequencing; RNA seq of zebrafish primordial germ cells and somatic cells during early embryogenesis	E MTAB 9857:PGC 5mm rep2 p	PGC 5mm rep2 p	RNA seq of zebrafish primordial germ cells and somatic cells during early embryogenesis	Zebrafish PGCs were isolated via FACS post embryo dissociation. The embryos were grown until the desired stage at 28.5C and collected in synchronous batches. Cell dissociation occurred via pipetting thoroughly up and down the pooled embryos until the solution appeared homogeneous. Yolk excess was removed by two rounds of centrifugation at 300 x g 5 minutes. Cells were passed through a 50 μm mesh and loaded into a FACS Aria II machine for cell sorting. Morpholino antisense oligos were used in order to inhibit Tdrd7 translation during zebrafish development. Stock morpholinos were diluted in phenol red and about 0.3 pM were injected into the yolk of a fertilised zebrafish embryo. As experimental control a group of embryos were injected with morpholinos having 5 mismatches for the target Tdrd7 transcript. A rescue experiment was performed with Tdrd7 MO resistant RNA from tdrd7 transcript. The RNA was in vitro transcribed and co injected in once cell embryo to rescue MO mediated Tdrd7 KD. Cells were lysed in presence of RNAse inhibitor 0.2 U/μl and cDNA generated from the cell lysate. cDNA was generated with the Takara SMART Seq® v4 Ultra® Low Input RNA Kit as from manufacturer's instruction. In brief reverse transcription was carried out in presence of the SMART Seq CDS Primer II A and SMARTScribeTM Reverse Transcriptase Takara Bio Europe 634889 France. Library amplification occurred according to protocol recommendations and the amplified cDNA purified via the Agencourt AMPure XP beads kit Beckman Coulter A63880 USA.	Experimental Factor: compound:tdrd7 5mismatch MO	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	NextSeq 550		ERP125516	NextSeq 550 paired end sequencing; RNA seq of zebrafish primordial germ cells and somatic cells during early embryogenesis	ENA FIRST PUBLIC:2020 12 24\|ENA LAST UPDATE:2020 12 09	Tdrd7_5mm_PGC_rep2_R1.fastq.gz Tdrd7_5mm_PGC_rep2_R2.fastq.gz	fastq fastq	673911944.0	4501723.0	E MTAB 9857:Tdrd7 5mm PGC rep2 R	0:74.85 1:74.85	A:184466911;C:150779527;G:155693395;T:182720480;N:251631	74	74	184466911	150779527	155693395	182720480	251631	ERX4777843	ERS5435609	ERA3184570	MRC London Institute of Medical Sciences and Faculty of Medicine, Imperial College, London, UK\|European Nucleotide Archive	MRC London Institute of Medical Sciences and Faculty of Medicine, Imperial College, London, UK\|European Nucleotide Archive	2	0.91989	0.92025	0.08795	0.08919	0.70096	0.70416	0.49184	0.49415	75	75	B	B	biological fallback assumption	illumina	nextseq	unknown	random_priming	unknown	sc	single_cell_plate	smartseq	United Kingdom	2020-12-02	Pharyngula	Embryo	Whole Organism	All anatomical structures
10116	10116	ERR4911019	ERX4777842	ERS5435608	ERP125516	PRJEB41701	RNA seq of zebrafish primordial germ cells and somatic cells during early embryogenesis	E-MTAB-9857	Transcriptome Analysis	In this rescue experiment embryos were injected with a Tdrd7 targeting morpholino to block translation of tdrd7 RNA and simultaneously provided with a Tdrd7 morpholino resistant RNA.	ENA FIRST PUBLIC:2020 12 24\|ENA LAST UPDATE:2020 12 02	Protocols: Zebrafish PGCs were isolated via FACS post embryo dissociation. The embryos were grown until the desired stage at 28.5C and collected in synchronous batches. Cell dissociation occurred via pipetting thoroughly up and down the pooled embryos until the solution appeared homogeneous. Yolk excess was removed by two rounds of centrifugation at 300 x g 5 minutes. Cells were passed through a 50 μm mesh and loaded into a FACS Aria II machine for cell sorting. Morpholino antisense oligos were used in order to inhibit Tdrd7 translation during zebrafish development. Stock morpholinos were diluted in phenol red and about 0.3 pM were injected into the yolk of a fertilised zebrafish embryo. As experimental control a group of embryos were injected with morpholinos having 5 mismatches for the target Tdrd7 transcript. A rescue experiment was performed with Tdrd7 MO resistant RNA from tdrd7 transcript. The RNA was in vitro transcribed and co injected in once cell embryo to rescue MO mediated Tdrd7 KD. Cells were lysed in presence of RNAse inhibitor 0.2 U/μl and cDNA generated from the cell lysate. cDNA was generated with the Takara SMART Seq® v4 Ultra® Low Input RNA Kit as from manufacturer's instruction. In brief reverse transcription was carried out in presence of the SMART Seq CDS Primer II A and SMARTScribeTM Reverse Transcriptase Takara Bio Europe 634889 France. Library amplification occurred according to protocol recommendations and the amplified cDNA purified via the Agencourt AMPure XP beads kit Beckman Coulter A63880 USA.	PGC 5mm rep1	SAMEA7678627	MRC London Institute of Medical Sciences and Faculty of Medicine, Imperial College, London, UK	ENA first public:2020 12 24\|ENA last update:2020 12 02\|External Id:SAMEA7678627\|INSDC center alias:MRC London Institute of Medical Sciences and Faculty of Medicine Imperial College London UK\|INSDC center name:MRC London Institute of Medical Sciences and Faculty of Medicine Imperial College London UK\|INSDC first public:2020 12 24T04:05:28Z\|INSDC last update:2020 12 02T17:13:26Z\|INSDC status:public\|Submitter Id:E MTAB 9857:PGC 5mm rep1\|age:24\|broker name:ArrayExpress\|cell type:primordial germ cell\|common name:zebrafish\|developmental stage:pharyngula prim 5\|genotype:tgbuc:gfp\|sample name:E MTAB 9857:PGC 5mm rep1\|strain:AB	NextSeq 550 paired end sequencing; RNA seq of zebrafish primordial germ cells and somatic cells during early embryogenesis	E MTAB 9857:PGC 5mm rep1 p	PGC 5mm rep1 p	RNA seq of zebrafish primordial germ cells and somatic cells during early embryogenesis	Zebrafish PGCs were isolated via FACS post embryo dissociation. The embryos were grown until the desired stage at 28.5C and collected in synchronous batches. Cell dissociation occurred via pipetting thoroughly up and down the pooled embryos until the solution appeared homogeneous. Yolk excess was removed by two rounds of centrifugation at 300 x g 5 minutes. Cells were passed through a 50 μm mesh and loaded into a FACS Aria II machine for cell sorting. Morpholino antisense oligos were used in order to inhibit Tdrd7 translation during zebrafish development. Stock morpholinos were diluted in phenol red and about 0.3 pM were injected into the yolk of a fertilised zebrafish embryo. As experimental control a group of embryos were injected with morpholinos having 5 mismatches for the target Tdrd7 transcript. A rescue experiment was performed with Tdrd7 MO resistant RNA from tdrd7 transcript. The RNA was in vitro transcribed and co injected in once cell embryo to rescue MO mediated Tdrd7 KD. Cells were lysed in presence of RNAse inhibitor 0.2 U/μl and cDNA generated from the cell lysate. cDNA was generated with the Takara SMART Seq® v4 Ultra® Low Input RNA Kit as from manufacturer's instruction. In brief reverse transcription was carried out in presence of the SMART Seq CDS Primer II A and SMARTScribeTM Reverse Transcriptase Takara Bio Europe 634889 France. Library amplification occurred according to protocol recommendations and the amplified cDNA purified via the Agencourt AMPure XP beads kit Beckman Coulter A63880 USA.	Experimental Factor: compound:tdrd7 5mismatch MO	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	NextSeq 550		ERP125516	NextSeq 550 paired end sequencing; RNA seq of zebrafish primordial germ cells and somatic cells during early embryogenesis	ENA FIRST PUBLIC:2020 12 24\|ENA LAST UPDATE:2020 12 09	Tdrd7_5mm_PGC_rep1_R1.fastq.gz Tdrd7_5mm_PGC_rep1_R2.fastq.gz	fastq fastq	565636692.0	3782000.0	E MTAB 9857:Tdrd7 5mm PGC rep1 R	0:74.78 1:74.78	A:157353454;C:124504476;G:128260137;T:155314004;N:204621	74	74	157353454	124504476	128260137	155314004	204621	ERX4777842	ERS5435608	ERA3184570	MRC London Institute of Medical Sciences and Faculty of Medicine, Imperial College, London, UK\|European Nucleotide Archive	MRC London Institute of Medical Sciences and Faculty of Medicine, Imperial College, London, UK\|European Nucleotide Archive	2	0.91957	0.91995	0.08301	0.0845	0.69929	0.70195	0.48544	0.4877	76	76	B	B	biological fallback assumption	illumina	nextseq	unknown	random_priming	unknown	sc	single_cell_plate	smartseq	United Kingdom	2020-12-02	Pharyngula	Embryo	Whole Organism	All anatomical structures
39629	39629	SRR1947863	SRX981062	SRS889614	SRP056748	PRJNA279991	Zebrafish Mespaa regulates miR 430 expression during gastrulation and initiates cardiac laterality	PRJNA279991	Other	Transcriptional events during initial vertebrate heart development in vivo remain poorly understood. Mesp1 a bHLH transcription factor has been described as the earliest transcriptional regulator of cardiac progenitors in multiple species and represents an excellent candidate for the investigation of relevant targets during cardiovascular development. We report here that both depletion and mutation of Mespaa the zebrafish homolog of mammalian Mesp1 lead to randomization of cardiac looping together with significant cardiac morphogenesis defects. These disruptions are preceded by a defect in cardiac left right asymmetry. Surprisingly the defect in asymmetry was found to occur independently of defects in the transient organ of laterality the Kupffer’s vesicle KV. We show that Mespaa regulates miR 430 expression during gastrulation to control the levels of Nodal signaling and that this regulation is required for asymmetric laterality signaling in the prospective heart field. Ectopic expression of miR 430 is sufficient to induce cardiac laterality defects and consistent with Mespaa over expression in this system the reduction of miR 430 leads to cardia bifida. This study reveals a novel transcriptional regulation of miR 430 by Mespaa and a role for this pathway in cardiac laterality during gastrulation.			Danio rerio injected with mespaa morpholino 5.5hpf	Zebrafish injected with mespaa morpholino		strain:Ekkwill\|dev stage:5.5hpf\|sex:pooled male and female\|tissue:whole embryo\|BioSampleModel:Model organism or animal	Zebrafish Mespaa regulates miR 430 expression during gastrulation and initiates cardiac laterality	Zebrafish injected with mespaa morpholino replicate 2	Zebrafish injected with mespaa morpholino replicate 2	1			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina HiSeq 2000		SRP056748		loader:latf load	Mespa-230413_TGTGAA_L008_R2.fastq.gz Mespa-230413_TGTGAA_L008_R1.fastq.gz	fastq fastq	7275994449.0	42132158.0	RNAseq Danio rerio 5.5hpf mespaa morpholino replicate2	0:101 1:101	A:2058072859;C:1476303521;G:1525105443;T:2088915957;N:127596669	101	101	2058072859	1476303521	1525105443	2088915957	127596669	SRX981062	SRS889614	SRA249481	Gladstone Institute\|Bioinformatics	Gladstone Institutes	2	0.86631	0.83649	0.14484	0.22396	0.78861	0.90727	0.65055	0.64516	101	101	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	United States	2015-04-07	Gastrula	Embryo	Whole Organism	All anatomical structures
39630	39630	SRR1947880	SRX981061	SRS895863	SRP056748	PRJNA279991	Zebrafish Mespaa regulates miR 430 expression during gastrulation and initiates cardiac laterality	PRJNA279991	Other	Transcriptional events during initial vertebrate heart development in vivo remain poorly understood. Mesp1 a bHLH transcription factor has been described as the earliest transcriptional regulator of cardiac progenitors in multiple species and represents an excellent candidate for the investigation of relevant targets during cardiovascular development. We report here that both depletion and mutation of Mespaa the zebrafish homolog of mammalian Mesp1 lead to randomization of cardiac looping together with significant cardiac morphogenesis defects. These disruptions are preceded by a defect in cardiac left right asymmetry. Surprisingly the defect in asymmetry was found to occur independently of defects in the transient organ of laterality the Kupffer’s vesicle KV. We show that Mespaa regulates miR 430 expression during gastrulation to control the levels of Nodal signaling and that this regulation is required for asymmetric laterality signaling in the prospective heart field. Ectopic expression of miR 430 is sufficient to induce cardiac laterality defects and consistent with Mespaa over expression in this system the reduction of miR 430 leads to cardia bifida. This study reveals a novel transcriptional regulation of miR 430 by Mespaa and a role for this pathway in cardiac laterality during gastrulation.			Danio rerio injected with negative control morpholino 5.5hpf	Zebrafish injected with untargeted negative control morpholino		strain:Ekkwill\|dev stage:5.5 hpf\|sex:pooled male and female\|tissue:whole embryo\|BioSampleModel:Model organism or animal	Zebrafish Mespaa regulates miR 430 expression during gastrulation and initiates cardiac laterality	Zebrafish injected with untargeted negative control morpholino replicate 2	Zebrafish injected with untargeted negative control morpholino replicate 2	1			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina HiSeq 2000		SRP056748		loader:latf load	Std-230413_GTGTTA_L008_R1.fastq.gz Std-230413_GTGTTA_L008_R2.fastq.gz	fastq fastq	10015452496.0	49581448.0	RNAseq Danio rerio 5.5hpf negative control morpholino replicate2	0:101 1:101	A:2883382922;C:1998043392;G:2046542450;T:2937071125;N:150412607	101	101	2883382922	1998043392	2046542450	2937071125	150412607	SRX981061	SRS895863	SRA249481	Gladstone Institute\|Bioinformatics	Gladstone Institutes	2	0.8766	0.85002	0.17158	0.25762	0.77167	0.89057	0.64584	0.66342	101	101	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	United States	2016-03-31	Gastrula	Embryo	Whole Organism	All anatomical structures
39631	39631	SRR1947876	SRX981011	SRS895863	SRP056748	PRJNA279991	Zebrafish Mespaa regulates miR 430 expression during gastrulation and initiates cardiac laterality	PRJNA279991	Other	Transcriptional events during initial vertebrate heart development in vivo remain poorly understood. Mesp1 a bHLH transcription factor has been described as the earliest transcriptional regulator of cardiac progenitors in multiple species and represents an excellent candidate for the investigation of relevant targets during cardiovascular development. We report here that both depletion and mutation of Mespaa the zebrafish homolog of mammalian Mesp1 lead to randomization of cardiac looping together with significant cardiac morphogenesis defects. These disruptions are preceded by a defect in cardiac left right asymmetry. Surprisingly the defect in asymmetry was found to occur independently of defects in the transient organ of laterality the Kupffer’s vesicle KV. We show that Mespaa regulates miR 430 expression during gastrulation to control the levels of Nodal signaling and that this regulation is required for asymmetric laterality signaling in the prospective heart field. Ectopic expression of miR 430 is sufficient to induce cardiac laterality defects and consistent with Mespaa over expression in this system the reduction of miR 430 leads to cardia bifida. This study reveals a novel transcriptional regulation of miR 430 by Mespaa and a role for this pathway in cardiac laterality during gastrulation.			Danio rerio injected with negative control morpholino 5.5hpf	Zebrafish injected with untargeted negative control morpholino		strain:Ekkwill\|dev stage:5.5 hpf\|sex:pooled male and female\|tissue:whole embryo\|BioSampleModel:Model organism or animal	Zebrafish Mespaa regulates miR 430 expression during gastrulation and initiates cardiac laterality	Zebrafish injected with untargeted negative control morpholino	Zebrafish injected with untargeted negative control morpholino replicate 1	1			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina HiSeq 2000		SRP056748		loader:latf load	Std-190413_ACACGA_L008_R2.fastq.gz Std-190413_ACACGA_L008_R1.fastq.gz	fastq fastq	10412449358.0	51546779.0	RNAseq Danio rerio 5.5hpf negative control morpholino replicate1	0:101 1:101	A:2998996009;C:2064995108;G:2125498634;T:3066600855;N:156358752	101	101	2998996009	2064995108	2125498634	3066600855	156358752	SRX981011	SRS895863	SRA249481	Gladstone Institute\|Bioinformatics	Gladstone Institutes	2	0.87394	0.84802	0.15672	0.23447	0.77072	0.89049	0.63241	0.65533	101	101	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	United States	2016-03-31	Gastrula	Embryo	Whole Organism	All anatomical structures
39632	39632	SRR1947862	SRX974390	SRS889614	SRP056748	PRJNA279991	Zebrafish Mespaa regulates miR 430 expression during gastrulation and initiates cardiac laterality	PRJNA279991	Other	Transcriptional events during initial vertebrate heart development in vivo remain poorly understood. Mesp1 a bHLH transcription factor has been described as the earliest transcriptional regulator of cardiac progenitors in multiple species and represents an excellent candidate for the investigation of relevant targets during cardiovascular development. We report here that both depletion and mutation of Mespaa the zebrafish homolog of mammalian Mesp1 lead to randomization of cardiac looping together with significant cardiac morphogenesis defects. These disruptions are preceded by a defect in cardiac left right asymmetry. Surprisingly the defect in asymmetry was found to occur independently of defects in the transient organ of laterality the Kupffer’s vesicle KV. We show that Mespaa regulates miR 430 expression during gastrulation to control the levels of Nodal signaling and that this regulation is required for asymmetric laterality signaling in the prospective heart field. Ectopic expression of miR 430 is sufficient to induce cardiac laterality defects and consistent with Mespaa over expression in this system the reduction of miR 430 leads to cardia bifida. This study reveals a novel transcriptional regulation of miR 430 by Mespaa and a role for this pathway in cardiac laterality during gastrulation.			Danio rerio injected with mespaa morpholino 5.5hpf	Zebrafish injected with mespaa morpholino		strain:Ekkwill\|dev stage:5.5hpf\|sex:pooled male and female\|tissue:whole embryo\|BioSampleModel:Model organism or animal	Zebrafish Mespaa regulates miR 430 expression during gastrulation and initiates cardiac laterality	RNAseq analysis of mespaa knockdown embryos	Zebrafish injected with mespaa morpholino replicate 1	1			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina HiSeq 2000	<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>	SRP056748		loader:latf load	Mespa-190413_CACACA_L008_R2.fastq.gz Mespa-190413_CACACA_L008_R1.fastq.gz	fastq fastq	715965164.0	3668538.0	RNAseq Danio rerio 5.5hpf mespaa morpholino replicate1	0:101 1:101	A:203464307;C:144071219;G:148845038;T:209200873;N:10383727	101	101	203464307	144071219	148845038	209200873	10383727	SRX974390	SRS889614	SRA249481	Gladstone Institute\|Bioinformatics	Gladstone Institutes	2	0.86222	0.8307	0.14165	0.17545	0.7624	0.84415	0.65454	0.64758	101	101	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	United States	2015-04-07	Gastrula	Embryo	Whole Organism	All anatomical structures
41309	41309	SRR4242454	SRX2163334	SRS1691357	SRP089876	PRJNA341782	Danio rerio Phenotype or Genotype	PRJNA341782	Other	Based on the differential comparison of transcriptomes of Homo hetero zygote Het and wild type Wt in vivo protein trap mutagenesis system we have produced series of expression codex of the zebrafish. Here we reported the transcriptomic characteristic of a line with stable deficits found in homozygous Homo expressing the strongest signal of red fluorescent protein mRFP in the central neural system and vascular system.				ho 160		strain:TU\|isolate:homozygous\|age:3 dpf\|dev stage:3 dpf\|sex:not determined\|tissue:whole fish\|biomaterial provider:Intitute of Medical Sciences University of Toronto Toronto Canada. Xiao yan WEN\|birth date:2015 05 01\|genotype:homozygous\|phenotype:small head abnormal vascular system\|treatment:in vivo protein trap mutagenesis\|BioSampleModel:Model organism or animal	1	ho 160	ho 160	1			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	SINGLE	ILLUMINA	Illumina HiSeq 2000		SRP089876			HO.fq.gz	fastq	568688414.0	11605886.0	HO.fq.gz	0:49	A:146833011;C:136838940;G:142141532;T:142831489;N:43442	49		146833011	136838940	142141532	142831489	43442	SRX2163334	SRS1691357	SRA471230	Guangdong Ocean University\|Fisheries College	Guangdong Ocean University	1	0.92072		0.03662		0.79584		0.46051		49		B		usable mapping rate	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2016-09-14	Larval	Larval	Whole Organism	All anatomical structures
41310	41310	SRR4242453	SRX2163333	SRS1691356	SRP089876	PRJNA341782	Danio rerio Phenotype or Genotype	PRJNA341782	Other	Based on the differential comparison of transcriptomes of Homo hetero zygote Het and wild type Wt in vivo protein trap mutagenesis system we have produced series of expression codex of the zebrafish. Here we reported the transcriptomic characteristic of a line with stable deficits found in homozygous Homo expressing the strongest signal of red fluorescent protein mRFP in the central neural system and vascular system.				he 160		strain:TU\|isolate:heterozygous\|age:3 dpf\|dev stage:3 dpf\|sex:not determined\|tissue:whole fish\|biomaterial provider:Intitute of Medical Sciences University of Toronto Toronto Canada. Xiao yan WEN\|birth date:2015 05 01\|genotype:heterozygous\|phenotype:normal\|treatment:in vivo protein trap mutagenesis\|BioSampleModel:Model organism or animal	1	he 160	he 160	1			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	SINGLE	ILLUMINA	Illumina HiSeq 2000		SRP089876			HE.fq	fastq	578835432.0	11812968.0	HE.fq	0:49	A:149797321;C:137638814;G:143656076;T:147699087;N:44134	49		149797321	137638814	143656076	147699087	44134	SRX2163333	SRS1691356	SRA471230	Guangdong Ocean University\|Fisheries College	Guangdong Ocean University	1	0.96392		0.03868		0.71064		0.48997		49		B		usable mapping rate	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2016-09-19	Larval	Larval	Whole Organism	All anatomical structures
41311	41311	SRR4242452	SRX2163332	SRS1691355	SRP089876	PRJNA341782	Danio rerio Phenotype or Genotype	PRJNA341782	Other	Based on the differential comparison of transcriptomes of Homo hetero zygote Het and wild type Wt in vivo protein trap mutagenesis system we have produced series of expression codex of the zebrafish. Here we reported the transcriptomic characteristic of a line with stable deficits found in homozygous Homo expressing the strongest signal of red fluorescent protein mRFP in the central neural system and vascular system.				wt 160		strain:TU\|isolate:wild type\|age:3 dpf\|dev stage:3 dpf\|sex:not determined\|tissue:whole fish\|biomaterial provider:Intitute of Medical Sciences University of Toronto Toronto Canada. Xiao yan WEN\|birth date:2015 05 01\|genotype:wild type\|phenotype:normal\|BioSampleModel:Model organism or animal	1	wt 160	wt 160	1			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	SINGLE	ILLUMINA	Illumina HiSeq 2000		SRP089876			WT.fq.gz	fastq	582208151.0	11881799.0	WT.fq.gz	0:49	A:151848733;C:138129346;G:143758419;T:148430704;N:40949	49		151848733	138129346	143758419	148430704	40949	SRX2163332	SRS1691355	SRA471230	Guangdong Ocean University\|Fisheries College	Guangdong Ocean University	1	0.95342		0.04301		0.75503		0.48726		49		B		usable mapping rate	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2016-09-19	Larval	Larval	Whole Organism	All anatomical structures
41349	41349	SRR4330940	SRX2205508	SRS1723862	SRP090717	PRJNA345071	Transcriptome sequencing of zebrafish mutants	PRJNA345071	Other	To investigate the possible mechanism that NOD1 impacts larval survival in zebrafish we performed transcriptome analysis to explore NOD1 related signaling pathways. Zebrafish larvae from WT and NOD1 1IS / were collected at 10 dpf and used for transcriptome sequencing.				ZIS 3		strain:mutant biological replicate 3\|dev stage:10 dpf\|sex:pooled male and female\|tissue:larvae\|biomaterial provider:Chang MX\|birth date:2015 08\|breeding method:?artificial insemination\|BioSampleModel:Model organism or animal	RNA seq of zebrafish mutant at 10 dpf	ZIS 3	ZIS 3	1			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina HiSeq 4000		SRP090717			ZIS-3_S41_L003_R1_001.fastq ZIS-3_S41_L003_R2_001.fastq	fastq fastq	8951074036.0	29639318.0	ZIS 3 S41 L003 R1 001.fastq	0:151 1:151	A:2283207699;C:2181203331;G:2250920956;T:2233298555;N:2443495	151	151	2283207699	2181203331	2250920956	2233298555	2443495	SRX2205508	SRS1723862	SRA481515	Institute of Hydrobiology, Chinese Academy of Sciences\|Center for Fish Biology and Fishery Biotechnology	Institute of Hydrobiology, Chinese Academy of Sciences	2	0.94568	0.94599	0.04792	0.04705	0.68511	0.69191	0.48349	0.49441	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2019-12-31	Larval	Larval	Whole Organism	All anatomical structures
41350	41350	SRR4330939	SRX2205507	SRS1723861	SRP090717	PRJNA345071	Transcriptome sequencing of zebrafish mutants	PRJNA345071	Other	To investigate the possible mechanism that NOD1 impacts larval survival in zebrafish we performed transcriptome analysis to explore NOD1 related signaling pathways. Zebrafish larvae from WT and NOD1 1IS / were collected at 10 dpf and used for transcriptome sequencing.				ZIS 2		strain:mutant biological replicate 2\|dev stage:10 dpf\|sex:pooled male and female\|tissue:larvae\|biomaterial provider:Chang MX\|birth date:2015 08\|breeding method:?artificial insemination\|BioSampleModel:Model organism or animal	RNA seq of zebrafish mutant at 10 dpf	ZIS 2	ZIS 2	1			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina HiSeq 4000		SRP090717			ZIS-2_S40_L003_R1_001.fastq ZIS-2_S40_L003_R2_001.fastq	fastq fastq	9435991208.0	31245004.0	ZIS 2 S40 L003 R2 001.fastq	0:151 1:151	A:2432777029;C:2274473737;G:2351228268;T:2374883671;N:2628503	151	151	2432777029	2274473737	2351228268	2374883671	2628503	SRX2205507	SRS1723861	SRA481515	Institute of Hydrobiology, Chinese Academy of Sciences\|Center for Fish Biology and Fishery Biotechnology	Institute of Hydrobiology, Chinese Academy of Sciences	2	0.93852	0.93895	0.06814	0.06752	0.67464	0.68185	0.4731	0.48737	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2019-12-31	Larval	Larval	Whole Organism	All anatomical structures
41351	41351	SRR4330938	SRX2205506	SRS1723859	SRP090717	PRJNA345071	Transcriptome sequencing of zebrafish mutants	PRJNA345071	Other	To investigate the possible mechanism that NOD1 impacts larval survival in zebrafish we performed transcriptome analysis to explore NOD1 related signaling pathways. Zebrafish larvae from WT and NOD1 1IS / were collected at 10 dpf and used for transcriptome sequencing.				ZIS 1		strain:mutant biological replicate 1\|dev stage:10 dpf\|sex:pooled male and female\|tissue:larvae\|biomaterial provider:Chang MX\|birth date:2015 08\|breeding method:?artificial insemination\|BioSampleModel:Model organism or animal	RNA seq of zebrafish mutant at 10 dpf	ZIS 1	ZIS 1	1			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina HiSeq 4000		SRP090717			ZIS-1_S58_L004_R1_001.fastq ZIS-1_S58_L004_R2_001.fastq	fastq fastq	9474125956.0	31371278.0	ZIS 1 S58 L004 R1 001.fastq	0:151 1:151	A:2432127105;C:2294541938;G:2369906198;T:2374445988;N:3104727	151	151	2432127105	2294541938	2369906198	2374445988	3104727	SRX2205506	SRS1723859	SRA481515	Institute of Hydrobiology, Chinese Academy of Sciences\|Center for Fish Biology and Fishery Biotechnology	Institute of Hydrobiology, Chinese Academy of Sciences	2	0.94217	0.94136	0.05812	0.05769	0.67957	0.68665	0.48986	0.48912	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2019-12-31	Larval	Larval	Whole Organism	All anatomical structures
41352	41352	SRR4330937	SRX2205505	SRS1723863	SRP090717	PRJNA345071	Transcriptome sequencing of zebrafish mutants	PRJNA345071	Other	To investigate the possible mechanism that NOD1 impacts larval survival in zebrafish we performed transcriptome analysis to explore NOD1 related signaling pathways. Zebrafish larvae from WT and NOD1 1IS / were collected at 10 dpf and used for transcriptome sequencing.				WT 3		strain:wild type biological replicate 3\|dev stage:10 dpf\|sex:pooled male and female\|tissue:larvae\|biomaterial provider:Chang MX\|birth date:2015 08\|breeding method:?artificial insemination\|BioSampleModel:Model organism or animal	RNA seq of zebrafish wildtype at 10 dpf	WT 3	WT 3	1			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina HiSeq 4000		SRP090717			WT-3_S59_L004_R1_001.fastq WT-3_S59_L004_R2_001.fastq	fastq fastq	9459728710.0	31323605.0	WT 3 S59 L004 R2 001.fastq	0:151 1:151	A:2435834973;C:2283457751;G:2353515662;T:2383834638;N:3085686	151	151	2435834973	2283457751	2353515662	2383834638	3085686	SRX2205505	SRS1723863	SRA481515	Institute of Hydrobiology, Chinese Academy of Sciences\|Center for Fish Biology and Fishery Biotechnology	Institute of Hydrobiology, Chinese Academy of Sciences	2	0.93703	0.93671	0.06932	0.06902	0.67815	0.68527	0.49406	0.48629	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2019-12-31	Larval	Larval	Whole Organism	All anatomical structures
41353	41353	SRR4330936	SRX2205504	SRS1723860	SRP090717	PRJNA345071	Transcriptome sequencing of zebrafish mutants	PRJNA345071	Other	To investigate the possible mechanism that NOD1 impacts larval survival in zebrafish we performed transcriptome analysis to explore NOD1 related signaling pathways. Zebrafish larvae from WT and NOD1 1IS / were collected at 10 dpf and used for transcriptome sequencing.				WT 2		strain:wild type biological replicate 2\|dev stage:10 dpf\|sex:pooled male and female\|tissue:larvae\|biomaterial provider:Chang MX\|birth date:2015 08\|breeding method:?artificial insemination\|BioSampleModel:Model organism or animal	RNA seq of zebrafish wildtype at 10 dpf	WT 2	WT 2	1			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina HiSeq 4000		SRP090717			WT-2_S39_L003_R1_001.fastq WT-2_S39_L003_R2_001.fastq	fastq fastq	8115257628.0	26871714.0	WT 2 S39 L003 R1 001.fastq	0:151 1:151	A:2056302105;C:1991691115;G:2061808328;T:2003236611;N:2219469	151	151	2056302105	1991691115	2061808328	2003236611	2219469	SRX2205504	SRS1723860	SRA481515	Institute of Hydrobiology, Chinese Academy of Sciences\|Center for Fish Biology and Fishery Biotechnology	Institute of Hydrobiology, Chinese Academy of Sciences	2	0.9479	0.94848	0.03505	0.0349	0.69946	0.70638	0.4871	0.48737	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2019-12-31	Larval	Larval	Whole Organism	All anatomical structures
41354	41354	SRR4330935	SRX2205503	SRS1723858	SRP090717	PRJNA345071	Transcriptome sequencing of zebrafish mutants	PRJNA345071	Other	To investigate the possible mechanism that NOD1 impacts larval survival in zebrafish we performed transcriptome analysis to explore NOD1 related signaling pathways. Zebrafish larvae from WT and NOD1 1IS / were collected at 10 dpf and used for transcriptome sequencing.				WT 1		strain:wild type biological replicate 1\|dev stage:10 dpf\|sex:pooled male and female\|tissue:larvae\|biomaterial provider:Chang MX\|birth date:2015 08\|breeding method:?artificial insemination\|BioSampleModel:Model organism or animal	RNA seq of zebrafish wildtype at 10 dpf	WT 1	WT 1	To investigate the possible mechanism that NOD1 impacts larval survival in zebrafish we performed transcriptome analysis to explore NOD1 related signaling pathways. Zebrafish larvae from WT and NOD1 1IS / were collected at 10 dpf and used for transcriptome sequencing.			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina HiSeq 4000		SRP090717			WT-1_S38_L003_R1_001.fastq WT-1_S38_L003_R2_001.fastq	fastq fastq	9771991274.0	32357587.0	WT 1 S38 L003 R2 001.fastq	0:151 1:151	A:2524417259;C:2348903783;G:2421563752;T:2474419170;N:2687310	151	151	2524417259	2348903783	2421563752	2474419170	2687310	SRX2205503	SRS1723858	SRA481515	Institute of Hydrobiology, Chinese Academy of Sciences\|Center for Fish Biology and Fishery Biotechnology	Institute of Hydrobiology, Chinese Academy of Sciences	2	0.93787	0.93896	0.0697	0.06907	0.67446	0.68162	0.49385	0.49554	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2019-12-31	Larval	Larval	Whole Organism	All anatomical structures
41603	41603	SRR5086607	SRX2403900	SRS1843204	SRP094738	PRJNA356682	Transcriptome sequencing of zebrafish mutants with or without xxx tarda infection	PRJNA356682	Other	To investigate the possible mechanism that NOD1/RIP2 impacts larval survival in zebrafish under infectious condition we performed transcriptome analysis. Zebrafish larvae from WT NOD1 / and RIP / were infected with Edwardsiella tarda and collected at 24 hours post infection hpi.				RIP2 Etarda 2		isolate:RIP2 mutant biological replicate 2\|age:7 dpf\|dev stage:larvae\|sex:pooled male and female\|tissue:larvae\|biomaterial provider:Chang MX\|birth date:2016 3\|BioSampleModel:Model organism or animal	RNA seq of zebrafish RIP2 mutant at 7 dpf	RIP2 Etarda 2	RIP2 Etarda 2	1			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina HiSeq 4000		SRP094738			S231_07B_CHG009012-0413lane6-RP-E-tarda-2_L003_R2.fastq.gz S231_07B_CHG009012-0413lane6-RP-E-tarda-2_L003_R1.fastq.gz	fastq fastq	12903564000.0	43011880.0	S231 07B CHG009012 0413lane6 RP E tarda 2 L003 R1.fastq.gz	0:150 1:150	A:3540121379;C:2905716861;G:3027503729;T:3429809429;N:412602	150	150	3540121379	2905716861	3027503729	3429809429	412602	SRX2403900	SRS1843204	SRA501516	Institute of Hydrobiology, Chinese Academy of Sciences\|Center for Fish Biology and Fishery Biotechnology	Institute of Hydrobiology, Chinese Academy of Sciences	2	0.91895	0.92448	0.22816	0.22865	0.6873	0.69104	0.59821	0.59683	150	150	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2016-12-08	Larval	Larval	Whole Organism	All anatomical structures
41604	41604	SRR5086606	SRX2403899	SRS1843203	SRP094738	PRJNA356682	Transcriptome sequencing of zebrafish mutants with or without xxx tarda infection	PRJNA356682	Other	To investigate the possible mechanism that NOD1/RIP2 impacts larval survival in zebrafish under infectious condition we performed transcriptome analysis. Zebrafish larvae from WT NOD1 / and RIP / were infected with Edwardsiella tarda and collected at 24 hours post infection hpi.				NOD1 Etarda 1		isolate:NOD1 mutant biological replicate 1\|age:7 dpf\|dev stage:larvae\|sex:pooled male and female\|tissue:larvae\|biomaterial provider:Chang MX\|birth date:2016 3\|BioSampleModel:Model organism or animal	RNA seq of zebrafish NOD1 mutant at 7 dpf	NOD1 Etarda 1	NOD1 Etarda 1	1			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina HiSeq 4000		SRP094738			S231_07B_CHG009012-0413lane6-ND-E-tarda-1_L003_R1.fastq.gz S231_07B_CHG009012-0413lane6-ND-E-tarda-1_L003_R2.fastq.gz	fastq fastq	12320572500.0	41068575.0	S231 07B CHG009012 0413lane6 ND E tarda 1 L003 R1.fastq.gz	0:150 1:150	A:3355646078;C:2797387103;G:2920550779;T:3246590603;N:397937	150	150	3355646078	2797387103	2920550779	3246590603	397937	SRX2403899	SRS1843203	SRA501516	Institute of Hydrobiology, Chinese Academy of Sciences\|Center for Fish Biology and Fishery Biotechnology	Institute of Hydrobiology, Chinese Academy of Sciences	2	0.86604	0.87043	0.20071	0.20146	0.69369	0.69869	0.5907	0.59843	150	150	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2020-11-27	Larval	Larval	Whole Organism	All anatomical structures
41605	41605	SRR5086605	SRX2403898	SRS1843202	SRP094738	PRJNA356682	Transcriptome sequencing of zebrafish mutants with or without xxx tarda infection	PRJNA356682	Other	To investigate the possible mechanism that NOD1/RIP2 impacts larval survival in zebrafish under infectious condition we performed transcriptome analysis. Zebrafish larvae from WT NOD1 / and RIP / were infected with Edwardsiella tarda and collected at 24 hours post infection hpi.				NOD1 Etarda 2		isolate:NOD1 mutant biological replicate 2\|age:7 dpf\|dev stage:larvae\|sex:pooled male and female\|tissue:larvae\|biomaterial provider:Chang MX\|birth date:2016 3\|BioSampleModel:Model organism or animal	RNA seq of zebrafish NOD1 mutant at 7 dpf	NOD1 Etarda 2	NOD1 Etarda 2	1			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina HiSeq 4000		SRP094738			S231_07B_CHG009012-0413lane6-ND-E-tarda-2_L003_R1.fastq.gz S231_07B_CHG009012-0413lane6-ND-E-tarda-2_L003_R2.fastq.gz	fastq fastq	15551299800.0	51837666.0	S231 07B CHG009012 0413lane6 ND E tarda 2 L003 R1.fastq.gz	0:150 1:150	A:4265070757;C:3495006741;G:3648563581;T:4142124454;N:534267	150	150	4265070757	3495006741	3648563581	4142124454	534267	SRX2403898	SRS1843202	SRA501516	Institute of Hydrobiology, Chinese Academy of Sciences\|Center for Fish Biology and Fishery Biotechnology	Institute of Hydrobiology, Chinese Academy of Sciences	2	0.86759	0.86834	0.23528	0.23586	0.68779	0.69272	0.57804	0.57769	150	150	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2020-11-27	Larval	Larval	Whole Organism	All anatomical structures
41606	41606	SRR5086604	SRX2403897	SRS1843201	SRP094738	PRJNA356682	Transcriptome sequencing of zebrafish mutants with or without xxx tarda infection	PRJNA356682	Other	To investigate the possible mechanism that NOD1/RIP2 impacts larval survival in zebrafish under infectious condition we performed transcriptome analysis. Zebrafish larvae from WT NOD1 / and RIP / were infected with Edwardsiella tarda and collected at 24 hours post infection hpi.				RIP2 Etarda 3		isolate:RIP2 mutant biological replicate 3\|age:7 dpf\|dev stage:larvae\|sex:pooled male and female\|tissue:larvae\|biomaterial provider:Chang MX\|birth date:2016 3\|BioSampleModel:Model organism or animal	RNA seq of zebrafish RIP2 mutant at 7 dpf	RIP2 Etarda 3	RIP2 Etarda 3	1			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina HiSeq 4000		SRP094738			S231_07B_CHG009012-0413lane6-RP-E-tarda-3_L003_R1.fastq.gz S231_07B_CHG009012-0413lane6-RP-E-tarda-3_L003_R2.fastq.gz	fastq fastq	12144058200.0	40480194.0	S231 07B CHG009012 0413lane6 RP E tarda 3 L003 R1.fastq.gz	0:150 1:150	A:3277198817;C:2779538400;G:2897367228;T:3189540397;N:413358	150	150	3277198817	2779538400	2897367228	3189540397	413358	SRX2403897	SRS1843201	SRA501516	Institute of Hydrobiology, Chinese Academy of Sciences\|Center for Fish Biology and Fishery Biotechnology	Institute of Hydrobiology, Chinese Academy of Sciences	2	0.91654	0.9175	0.25593	0.25637	0.68795	0.69414	0.56468	0.56806	150	150	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2020-11-27	Larval	Larval	Whole Organism	All anatomical structures
41607	41607	SRR5086603	SRX2403896	SRS1843200	SRP094738	PRJNA356682	Transcriptome sequencing of zebrafish mutants with or without xxx tarda infection	PRJNA356682	Other	To investigate the possible mechanism that NOD1/RIP2 impacts larval survival in zebrafish under infectious condition we performed transcriptome analysis. Zebrafish larvae from WT NOD1 / and RIP / were infected with Edwardsiella tarda and collected at 24 hours post infection hpi.				WT Etarda 3		isolate:wild type biological replicate 3\|age:7 dpf\|dev stage:larvae\|sex:pooled male and female\|tissue:larvae\|biomaterial provider:Chang MX\|birth date:2016 3\|BioSampleModel:Model organism or animal	RNA seq of zebrafish wildtype at 7 dpf	WT Etarda 3	WT Etarda 3	1			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina HiSeq 4000		SRP094738			S231_07B_CHG009012-0413lane6-WT-E-tarda-3_L003_R1.fastq.gz S231_07B_CHG009012-0413lane6-WT-E-tarda-3_L003_R2.fastq.gz	fastq fastq	13158784200.0	43862614.0	S231 07B CHG009012 0413lane6 WT E tarda 3 L003 R1.fastq.gz	0:150 1:150	A:3492740553;C:3076792456;G:3216533074;T:3372287751;N:430366	150	150	3492740553	3076792456	3216533074	3372287751	430366	SRX2403896	SRS1843200	SRA501516	Institute of Hydrobiology, Chinese Academy of Sciences\|Center for Fish Biology and Fishery Biotechnology	Institute of Hydrobiology, Chinese Academy of Sciences	2	0.91602	0.92416	0.23246	0.23514	0.68164	0.68663	0.55407	0.55215	150	150	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2020-11-27	Larval	Larval	Whole Organism	All anatomical structures
41608	41608	SRR5086602	SRX2403895	SRS1843199	SRP094738	PRJNA356682	Transcriptome sequencing of zebrafish mutants with or without xxx tarda infection	PRJNA356682	Other	To investigate the possible mechanism that NOD1/RIP2 impacts larval survival in zebrafish under infectious condition we performed transcriptome analysis. Zebrafish larvae from WT NOD1 / and RIP / were infected with Edwardsiella tarda and collected at 24 hours post infection hpi.				WT Etarda 1		isolate:wild type biological replicate 1\|age:7 dpf\|dev stage:larvae\|sex:pooled male and female\|tissue:larvae\|biomaterial provider:Chang MX\|birth date:2016 3\|BioSampleModel:Model organism or animal	RNA seq of zebrafish wildtype at 7dpf	WT Etarda 1	WT Etarda 1	To investigate the possible mechanism that NOD1/RIP2 impacts larval survival in zebrafish under infectious condition we performed transcriptome analysis. Zebrafish larvae from WT NOD1 / and RIP / were infected with Edwardsiella tarda and collected at 24 hours post infection hpi.			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina HiSeq 4000		SRP094738			S231_07B_CHG009012-0413lane6-WT-E-tarda-1_L003_R1.fastq.gz S231_07B_CHG009012-0413lane6-WT-E-tarda-1_L003_R2.fastq.gz	fastq fastq	11991766500.0	39972555.0	S231 07B CHG009012 0413lane6 WT E tarda 1 L003 R1.fastq.gz	0:150 1:150	A:3282107515;C:2699757677;G:2810716102;T:3198780035;N:405171	150	150	3282107515	2699757677	2810716102	3198780035	405171	SRX2403895	SRS1843199	SRA501516	Institute of Hydrobiology, Chinese Academy of Sciences\|Center for Fish Biology and Fishery Biotechnology	Institute of Hydrobiology, Chinese Academy of Sciences	2	0.91731	0.91778	0.23094	0.23042	0.6784	0.68596	0.59413	0.59241	150	150	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2020-11-27	Larval	Larval	Whole Organism	All anatomical structures
41609	41609	SRR5086601	SRX2403894	SRS1843198	SRP094738	PRJNA356682	Transcriptome sequencing of zebrafish mutants with or without xxx tarda infection	PRJNA356682	Other	To investigate the possible mechanism that NOD1/RIP2 impacts larval survival in zebrafish under infectious condition we performed transcriptome analysis. Zebrafish larvae from WT NOD1 / and RIP / were infected with Edwardsiella tarda and collected at 24 hours post infection hpi.				NOD1 Etarda 3		isolate:NOD1 mutant biological replicate 3\|age:7 dpf\|dev stage:larvae\|sex:pooled male and female\|tissue:larvae\|biomaterial provider:Chang MX\|birth date:2016 3\|BioSampleModel:Model organism or animal	RNA seq of zebrafish NOD1 mutant at 7 dpf	NOD1 Etarda 3	NOD1 Etarda 3	1			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina HiSeq 4000		SRP094738			S231_07B_CHG009012-0413lane6-ND-E-tarda-3_L003_R1.fastq.gz S231_07B_CHG009012-0413lane6-ND-E-tarda-3_L003_R2.fastq.gz	fastq fastq	13231011300.0	44103371.0	S231 07B CHG009012 0413lane6 ND E tarda 3 L003 R1.fastq.gz	0:150 1:150	A:3583948856;C:3022120866;G:3144073054;T:3480438095;N:430429	150	150	3583948856	3022120866	3144073054	3480438095	430429	SRX2403894	SRS1843198	SRA501516	Institute of Hydrobiology, Chinese Academy of Sciences\|Center for Fish Biology and Fishery Biotechnology	Institute of Hydrobiology, Chinese Academy of Sciences	2	0.8625	0.86327	0.21095	0.21123	0.69126	0.69808	0.59807	0.59873	150	150	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2020-11-27	Larval	Larval	Whole Organism	All anatomical structures
41610	41610	SRR5086600	SRX2403893	SRS1843197	SRP094738	PRJNA356682	Transcriptome sequencing of zebrafish mutants with or without xxx tarda infection	PRJNA356682	Other	To investigate the possible mechanism that NOD1/RIP2 impacts larval survival in zebrafish under infectious condition we performed transcriptome analysis. Zebrafish larvae from WT NOD1 / and RIP / were infected with Edwardsiella tarda and collected at 24 hours post infection hpi.				WT Etarda 2		isolate:wild type biological replicate 2\|age:7 dpf\|dev stage:larvae\|sex:pooled male and female\|tissue:larvae\|biomaterial provider:Chang MX\|birth date:2016 3\|BioSampleModel:Model organism or animal	RNA seq of zebrafish wildtype at 7 dpf	WT Etarda 2	WT Etarda 2	1			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina HiSeq 4000		SRP094738			S231_07B_CHG009012-0413lane6-WT-E-tarda-2_L003_R1.fastq.gz S231_07B_CHG009012-0413lane6-WT-E-tarda-2_L003_R2.fastq.gz	fastq fastq	11385997200.0	37953324.0	S231 07B CHG009012 0413lane6 WT E tarda 2 L003 R1.fastq.gz	0:150 1:150	A:3100666193;C:2581361422;G:2676308702;T:3027299840;N:361043	150	150	3100666193	2581361422	2676308702	3027299840	361043	SRX2403893	SRS1843197	SRA501516	Institute of Hydrobiology, Chinese Academy of Sciences\|Center for Fish Biology and Fishery Biotechnology	Institute of Hydrobiology, Chinese Academy of Sciences	2	0.91592	0.91843	0.23215	0.23276	0.67894	0.6843	0.56756	0.57405	150	150	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2020-11-27	Larval	Larval	Whole Organism	All anatomical structures
41611	41611	SRR5086599	SRX2403892	SRS1843196	SRP094738	PRJNA356682	Transcriptome sequencing of zebrafish mutants with or without xxx tarda infection	PRJNA356682	Other	To investigate the possible mechanism that NOD1/RIP2 impacts larval survival in zebrafish under infectious condition we performed transcriptome analysis. Zebrafish larvae from WT NOD1 / and RIP / were infected with Edwardsiella tarda and collected at 24 hours post infection hpi.				RIP2 Etarda 1		isolate:RIP2 mutant biological replicate 1\|age:7 dpf\|dev stage:larvae\|sex:pooled male and female\|tissue:larvae\|biomaterial provider:Chang MX\|birth date:2016 3\|BioSampleModel:Model organism or animal	RNA seq of zebrafish RIP2 mutant at 7 dpf	RIP2 Etarda 1	RIP2 Etarda 1	1			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina HiSeq 4000		SRP094738			S231_07B_CHG009012-0413lane6-RP-E-tarda-1_L003_R1.fastq.gz S231_07B_CHG009012-0413lane6-RP-E-tarda-1_L003_R2.fastq.gz	fastq fastq	12517987200.0	41726624.0	S231 07B CHG009012 0413lane6 RP E tarda 1 L003 R1.fastq.gz	0:150 1:150	A:3383702176;C:2864897363;G:2969958296;T:3299042555;N:386810	150	150	3383702176	2864897363	2969958296	3299042555	386810	SRX2403892	SRS1843196	SRA501516	Institute of Hydrobiology, Chinese Academy of Sciences\|Center for Fish Biology and Fishery Biotechnology	Institute of Hydrobiology, Chinese Academy of Sciences	2	0.92847	0.93046	0.20764	0.20908	0.68217	0.68889	0.58846	0.59063	150	150	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2020-11-27	Larval	Larval	Whole Organism	All anatomical structures
41754	41754	SRR5131065	SRX2444929	SRS1878801	SRP095651	PRJNA358793	Transcriptome sequencing of zebrafish RIP2 mutants	PRJNA358793	Other	Zebrafish larvae from wildtype and RIP2 / were collected at 7 dpf and used for transcriptome sequencing.				control 3		isolate:wild type biological replicate 3\|age:7 dpf\|dev stage:larvae\|sex:pooled male and female\|tissue:larvae\|biomaterial provider:Chang MX\|birth date:2016 3\|BioSampleModel:Model organism or animal	RNA seq of zebrafish wildtype at 7 dpf	control 3	control 3	1			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina HiSeq 4000		SRP095651			S231_07B_CHG009010-0413lane4-WT-3_L001_R2.fastq.gz S231_07B_CHG009010-0413lane4-WT-3_L001_R1.fastq.gz	fastq fastq	7170870300.0	23902901.0	S231 07B CHG009010 0413lane4 WT 3 L001 R2.fastq.gz	0:150 1:150	A:1861223343;C:1713993670;G:1720465419;T:1875067010;N:120858	150	150	1861223343	1713993670	1720465419	1875067010	120858	SRX2444929	SRS1878801	SRA510115	Institute of Hydrobiology, Chinese Academy of Sciences\|Center for Fish Biology and Fishery Biotechnology	Institute of Hydrobiology, Chinese Academy of Sciences	2	0.93719	0.93331	0.07804	0.07734	0.66478	0.67152	0.48991	0.48846	150	150	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2016-12-25	Larval	Larval	Whole Organism	All anatomical structures
41755	41755	SRR5131064	SRX2444928	SRS1878800	SRP095651	PRJNA358793	Transcriptome sequencing of zebrafish RIP2 mutants	PRJNA358793	Other	Zebrafish larvae from wildtype and RIP2 / were collected at 7 dpf and used for transcriptome sequencing.				RP 3		isolate:RIP2 mutant biological replicate 3\|age:7 dpf\|dev stage:larvae\|sex:pooled male and female\|tissue:larvae\|biomaterial provider:Chang MX\|birth date:2016 3\|BioSampleModel:Model organism or animal	RNA seq of zebrafish RIP2 mutant at 7 dpf	RP 3	RP 3	1			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina HiSeq 4000		SRP095651			S231_07B_CHG009010-0413lane4-RP-3_L001_R1.fastq.gz S231_07B_CHG009010-0413lane4-RP-3_L001_R2.fastq.gz	fastq fastq	7468205400.0	24894018.0	S231 07B CHG009010 0413lane4 RP 3 L001 R1.fastq.gz	0:150 1:150	A:1923116988;C:1800729614;G:1804880487;T:1939349442;N:128869	150	150	1923116988	1800729614	1804880487	1939349442	128869	SRX2444928	SRS1878800	SRA510115	Institute of Hydrobiology, Chinese Academy of Sciences\|Center for Fish Biology and Fishery Biotechnology	Institute of Hydrobiology, Chinese Academy of Sciences	2	0.94182	0.93791	0.07003	0.06911	0.67391	0.68032	0.48725	0.48383	150	150	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2020-12-21	Larval	Larval	Whole Organism	All anatomical structures
41756	41756	SRR5131063	SRX2444927	SRS1878799	SRP095651	PRJNA358793	Transcriptome sequencing of zebrafish RIP2 mutants	PRJNA358793	Other	Zebrafish larvae from wildtype and RIP2 / were collected at 7 dpf and used for transcriptome sequencing.				control 1		isolate:wild type biological replicate 1\|age:7 dpf\|dev stage:larvae\|sex:pooled male and female\|tissue:larvae\|biomaterial provider:Chang MX\|birth date:2016 3\|BioSampleModel:Model organism or animal	RNA seq of zebrafish wildtype at 7dpf	control 1	control 1	To investigate the possible mechanism that RIP2 impacts immune response in zebrafish we performed transcriptome analysis. Zebrafish larvae from WT and RIP / were collected at 7 dpf.			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina HiSeq 4000		SRP095651			S231_07B_CHG009010-0413lane4-WT-1_L001_R1.fastq.gz S231_07B_CHG009010-0413lane4-WT-1_L001_R2.fastq.gz	fastq fastq	7794774600.0	25982582.0	S231 07B CHG009010 0413lane4 WT 1 L001 R1.fastq.gz	0:150 1:150	A:2030478380;C:1854310335;G:1862519444;T:2047324790;N:141651	150	150	2030478380	1854310335	1862519444	2047324790	141651	SRX2444927	SRS1878799	SRA510115	Institute of Hydrobiology, Chinese Academy of Sciences\|Center for Fish Biology and Fishery Biotechnology	Institute of Hydrobiology, Chinese Academy of Sciences	2	0.94149	0.93653	0.07296	0.07218	0.66614	0.67294	0.49615	0.48813	150	150	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2020-12-21	Larval	Larval	Whole Organism	All anatomical structures
41757	41757	SRR5131062	SRX2444926	SRS1878798	SRP095651	PRJNA358793	Transcriptome sequencing of zebrafish RIP2 mutants	PRJNA358793	Other	Zebrafish larvae from wildtype and RIP2 / were collected at 7 dpf and used for transcriptome sequencing.				control 2		isolate:wild type biological replicate 2\|age:7 dpf\|dev stage:larvae\|sex:pooled male and female\|tissue:larvae\|biomaterial provider:Chang MX\|birth date:2016 3\|BioSampleModel:Model organism or animal	RNA seq of zebrafish wildtype at 7 dpf	control 2	control 2	1			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina HiSeq 4000		SRP095651			S231_07B_CHG009010-0413lane4-WT-2_L001_R1.fastq.gz S231_07B_CHG009010-0413lane4-WT-2_L001_R2.fastq.gz	fastq fastq	5623326600.0	18744422.0	S231 07B CHG009010 0413lane4 WT 2 L001 R2.fastq.gz	0:150 1:150	A:1451164902;C:1350358314;G:1359170147;T:1462531546;N:101691	150	150	1451164902	1350358314	1359170147	1462531546	101691	SRX2444926	SRS1878798	SRA510115	Institute of Hydrobiology, Chinese Academy of Sciences\|Center for Fish Biology and Fishery Biotechnology	Institute of Hydrobiology, Chinese Academy of Sciences	2	0.93864	0.93904	0.06797	0.06755	0.67048	0.67521	0.49371	0.48819	150	150	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2020-12-21	Larval	Larval	Whole Organism	All anatomical structures
41758	41758	SRR5131061	SRX2444925	SRS1878797	SRP095651	PRJNA358793	Transcriptome sequencing of zebrafish RIP2 mutants	PRJNA358793	Other	Zebrafish larvae from wildtype and RIP2 / were collected at 7 dpf and used for transcriptome sequencing.				RP 1		isolate:RIP2 mutant biological replicate 1\|age:7 dpf\|dev stage:larvae\|sex:pooled male and female\|tissue:larvae\|biomaterial provider:Chang MX\|birth date:2016 3\|BioSampleModel:Model organism or animal	RNA seq of zebrafish RIP2 mutant at 7 dpf	RP 1	RP 1	1			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina HiSeq 4000		SRP095651			S231_07B_CHG009010-0413lane4-RP-1_L001_R1.fastq.gz S231_07B_CHG009010-0413lane4-RP-1_L001_R2.fastq.gz	fastq fastq	8583762600.0	28612542.0	S231 07B CHG009010 0413lane4 RP 1 L001 R2.fastq.gz	0:150 1:150	A:2233488442;C:2047436003;G:2053585249;T:2249097620;N:155286	150	150	2233488442	2047436003	2053585249	2249097620	155286	SRX2444925	SRS1878797	SRA510115	Institute of Hydrobiology, Chinese Academy of Sciences\|Center for Fish Biology and Fishery Biotechnology	Institute of Hydrobiology, Chinese Academy of Sciences	2	0.94045	0.93559	0.08356	0.0825	0.66576	0.67188	0.48456	0.48745	150	150	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2020-12-21	Larval	Larval	Whole Organism	All anatomical structures
41759	41759	SRR5131060	SRX2444924	SRS1878796	SRP095651	PRJNA358793	Transcriptome sequencing of zebrafish RIP2 mutants	PRJNA358793	Other	Zebrafish larvae from wildtype and RIP2 / were collected at 7 dpf and used for transcriptome sequencing.				RP 2		isolate:RIP2 mutant biological replicate 2\|age:7 dpf\|dev stage:larvae\|sex:pooled male and female\|tissue:larvae\|biomaterial provider:Chang MX\|birth date:2016 3\|BioSampleModel:Model organism or animal	RNA seq of zebrafish RIP2 mutant at 7 dpf	RP 2	RP 2	1			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina HiSeq 4000		SRP095651			S231_07B_CHG009010-0413lane4-RP-2_L001_R1.fastq.gz S231_07B_CHG009010-0413lane4-RP-2_L001_R2.fastq.gz	fastq fastq	6660884700.0	22202949.0	S231 07B CHG009010 0413lane4 RP 2 L001 R1.fastq.gz	0:150 1:150	A:1716524391;C:1604826566;G:1610050455;T:1729364340;N:118948	150	150	1716524391	1604826566	1610050455	1729364340	118948	SRX2444924	SRS1878796	SRA510115	Institute of Hydrobiology, Chinese Academy of Sciences\|Center for Fish Biology and Fishery Biotechnology	Institute of Hydrobiology, Chinese Academy of Sciences	2	0.94509	0.94069	0.07191	0.0702	0.67322	0.68045	0.4937	0.4864	150	150	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2020-12-21	Larval	Larval	Whole Organism	All anatomical structures
55655	55655	SRR10674410	SRX7351703	SRS5811186	SRP237283	PRJNA595113	Transcriptomic responses of Bisphenol S on zebrafish	PRJNA595113	Other	To better understand the multiple interacting molecular mechanisms that are altered during BPS exposure global transcriptome sequencing RNA Seq was performed in embryonic fish to quantify expression levels of transcripts with a high sensitivity and broad genome coverage post BPS treatment19. To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.				BPS 100 1		isolate:biologocal replicate 10\|age:120hpf\|sex:not collected\|tissue:embryo\|collection date:2018 05 01\|geo loc name:China:Guangdong\|BioSampleModel:Model organism or animal	Transcriptomic responses of Bisphenol S	bps050110	bps050110	An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent Santa Clara CA USA with only high quality RNA samples 28 S:18 S=2.02.2 RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen China . The libraries were sequenced at the Beijing Genomics Institute BGI Shenzhen China on a BGISEQ500 platform with 50 bp single end reads under three replicates per treatment group.			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	BGISEQ	BGISEQ-500		SRP237283			BPS_100_1_1.fq.gz BPS_100_1_2.fq.gz	fastq fastq	6958801200.0	69588012.0	BPS 100 1 1.fq.gz	0:100 1:100	A:1852139865;C:1635606671;G:1596180575;T:1874072794;N:801295	100	100	1852139865	1635606671	1596180575	1874072794	801295	SRX7351703	SRS5811186	SRA1010884	Southern University of Science and Technology\|School of Environmental Science and Engineering	Southern University of Science and Technology	1	0.94716		0.09824		0.68475		0.47195		100		B		usable mapping rate	bgi	bgi	unknown	random_priming	unknown	bulk	unknown	unknown	China	2019-12-12	Larval	Larval	Embryo Imprecise	All anatomical structures
55656	55656	SRR10674411	SRX7351702	SRS5811185	SRP237283	PRJNA595113	Transcriptomic responses of Bisphenol S on zebrafish	PRJNA595113	Other	To better understand the multiple interacting molecular mechanisms that are altered during BPS exposure global transcriptome sequencing RNA Seq was performed in embryonic fish to quantify expression levels of transcripts with a high sensitivity and broad genome coverage post BPS treatment19. To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.				BPS 10 3		isolate:biologocal replicate 9\|age:120hpf\|sex:not collected\|tissue:embryo\|collection date:2018 05 01\|geo loc name:China:Guangdong\|BioSampleModel:Model organism or animal	Transcriptomic responses of Bisphenol S	bps050109	bps050109	An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent Santa Clara CA USA with only high quality RNA samples 28 S:18 S=2.02.2 RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen China . The libraries were sequenced at the Beijing Genomics Institute BGI Shenzhen China on a BGISEQ500 platform with 50 bp single end reads under three replicates per treatment group.			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	BGISEQ	BGISEQ-500		SRP237283			BPS_10_3_1.fq.gz BPS_10_3_2.fq.gz	fastq fastq	6969574800.0	69695748.0	BPS 10 3 1.fq.gz	0:100 1:100	A:1860393053;C:1631995190;G:1597357772;T:1879188120;N:640665	100	100	1860393053	1631995190	1597357772	1879188120	640665	SRX7351702	SRS5811185	SRA1010884	Southern University of Science and Technology\|School of Environmental Science and Engineering	Southern University of Science and Technology	1	0.94597		0.10542		0.68016		0.4666		100		B		usable mapping rate	bgi	bgi	unknown	random_priming	unknown	bulk	unknown	unknown	China	2019-12-12	Larval	Larval	Embryo Imprecise	All anatomical structures
55657	55657	SRR10674412	SRX7351701	SRS5811182	SRP237283	PRJNA595113	Transcriptomic responses of Bisphenol S on zebrafish	PRJNA595113	Other	To better understand the multiple interacting molecular mechanisms that are altered during BPS exposure global transcriptome sequencing RNA Seq was performed in embryonic fish to quantify expression levels of transcripts with a high sensitivity and broad genome coverage post BPS treatment19. To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.				BPS 10 2		isolate:biologocal replicate 8\|age:120hpf\|sex:not collected\|tissue:embryo\|collection date:2018 05 01\|geo loc name:China:Guangdong\|BioSampleModel:Model organism or animal	Transcriptomic responses of Bisphenol S	bps050108	bps050108	An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent Santa Clara CA USA with only high quality RNA samples 28 S:18 S=2.02.2 RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen China . The libraries were sequenced at the Beijing Genomics Institute BGI Shenzhen China on a BGISEQ500 platform with 50 bp single end reads under three replicates per treatment group.			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	BGISEQ	BGISEQ-500		SRP237283			BPS_10_2_1.fq.gz BPS_10_2_2.fq.gz	fastq fastq	6709340400.0	67093404.0	BPS 10 2 1.fq.gz	0:100 1:100	A:2036224090;C:1319652145;G:1297564214;T:2055258677;N:641274	100	100	2036224090	1319652145	1297564214	2055258677	641274	SRX7351701	SRS5811182	SRA1010884	Southern University of Science and Technology\|School of Environmental Science and Engineering	Southern University of Science and Technology	1	0.87778		0.38111		0.71543		0.56061		100		B		usable mapping rate	bgi	bgi	unknown	random_priming	unknown	bulk	unknown	unknown	China	2019-12-12	Larval	Larval	Embryo Imprecise	All anatomical structures
55658	55658	SRR10674413	SRX7351700	SRS5811181	SRP237283	PRJNA595113	Transcriptomic responses of Bisphenol S on zebrafish	PRJNA595113	Other	To better understand the multiple interacting molecular mechanisms that are altered during BPS exposure global transcriptome sequencing RNA Seq was performed in embryonic fish to quantify expression levels of transcripts with a high sensitivity and broad genome coverage post BPS treatment19. To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.				BPS 10 1		isolate:biologocal replicate 7\|age:120hpf\|sex:not collected\|tissue:embryo\|collection date:2018 05 01\|geo loc name:China:Guangdong\|BioSampleModel:Model organism or animal	Transcriptomic responses of Bisphenol S	bps050107	bps050107	An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent Santa Clara CA USA with only high quality RNA samples 28 S:18 S=2.02.2 RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen China . The libraries were sequenced at the Beijing Genomics Institute BGI Shenzhen China on a BGISEQ500 platform with 50 bp single end reads under three replicates per treatment group.			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	BGISEQ	BGISEQ-500		SRP237283			BPS_10_1_1.fq.gz BPS_10_1_2.fq.gz	fastq fastq	6717746800.0	67177468.0	BPS 10 1 1.fq.gz	0:100 1:100	A:1787637885;C:1578942212;G:1548400030;T:1802147201;N:619472	100	100	1787637885	1578942212	1548400030	1802147201	619472	SRX7351700	SRS5811181	SRA1010884	Southern University of Science and Technology\|School of Environmental Science and Engineering	Southern University of Science and Technology	1	0.94726		0.10123		0.68919		0.45234		100		B		usable mapping rate	bgi	bgi	unknown	random_priming	unknown	bulk	unknown	unknown	China	2019-12-12	Larval	Larval	Embryo Imprecise	All anatomical structures
55659	55659	SRR10674414	SRX7351699	SRS5811184	SRP237283	PRJNA595113	Transcriptomic responses of Bisphenol S on zebrafish	PRJNA595113	Other	To better understand the multiple interacting molecular mechanisms that are altered during BPS exposure global transcriptome sequencing RNA Seq was performed in embryonic fish to quantify expression levels of transcripts with a high sensitivity and broad genome coverage post BPS treatment19. To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.				BPS 1 3		isolate:biologocal replicate 6\|age:120hpf\|sex:not collected\|tissue:embryo\|collection date:2018 05 01\|geo loc name:China:Guangdong\|BioSampleModel:Model organism or animal	Transcriptomic responses of Bisphenol S	bps050106	bps050106	An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent Santa Clara CA USA with only high quality RNA samples 28 S:18 S=2.02.2 RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen China . The libraries were sequenced at the Beijing Genomics Institute BGI Shenzhen China on a BGISEQ500 platform with 50 bp single end reads under three replicates per treatment group.			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	BGISEQ	BGISEQ-500		SRP237283			BPS_1_3_2.fq.gz BPS_1_3_1.fq.gz	fastq fastq	6726522800.0	67265228.0	BPS 1 3 1.fq.gz	0:100 1:100	A:1789486049;C:1582069064;G:1548432478;T:1805913744;N:621465	100	100	1789486049	1582069064	1548432478	1805913744	621465	SRX7351699	SRS5811184	SRA1010884	Southern University of Science and Technology\|School of Environmental Science and Engineering	Southern University of Science and Technology	1	0.9465		0.09858		0.68442		0.45032		100		B		usable mapping rate	bgi	bgi	unknown	random_priming	unknown	bulk	unknown	unknown	China	2019-12-12	Larval	Larval	Embryo Imprecise	All anatomical structures
55660	55660	SRR10674415	SRX7351698	SRS5811180	SRP237283	PRJNA595113	Transcriptomic responses of Bisphenol S on zebrafish	PRJNA595113	Other	To better understand the multiple interacting molecular mechanisms that are altered during BPS exposure global transcriptome sequencing RNA Seq was performed in embryonic fish to quantify expression levels of transcripts with a high sensitivity and broad genome coverage post BPS treatment19. To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.				BPS 1 2		isolate:biologocal replicate 5\|age:120hpf\|sex:not collected\|tissue:embryo\|collection date:2018 05 01\|geo loc name:China:Guangdong\|BioSampleModel:Model organism or animal	Transcriptomic responses of Bisphenol S	bps050105	bps050105	An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent Santa Clara CA USA with only high quality RNA samples 28 S:18 S=2.02.2 RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen China . The libraries were sequenced at the Beijing Genomics Institute BGI Shenzhen China on a BGISEQ500 platform with 50 bp single end reads under three replicates per treatment group.			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	BGISEQ	BGISEQ-500		SRP237283			BPS_1_2_2.fq.gz BPS_1_2_1.fq.gz	fastq fastq	6959685000.0	69596850.0	BPS 1 2 1.fq.gz	0:100 1:100	A:1914426129;C:1574998719;G:1542052351;T:1927550147;N:657654	100	100	1914426129	1574998719	1542052351	1927550147	657654	SRX7351698	SRS5811180	SRA1010884	Southern University of Science and Technology\|School of Environmental Science and Engineering	Southern University of Science and Technology	1	0.94034		0.14574		0.69934		0.47033		100		B		usable mapping rate	bgi	bgi	unknown	random_priming	unknown	bulk	unknown	unknown	China	2019-12-12	Larval	Larval	Embryo Imprecise	All anatomical structures
55661	55661	SRR10674416	SRX7351697	SRS5811183	SRP237283	PRJNA595113	Transcriptomic responses of Bisphenol S on zebrafish	PRJNA595113	Other	To better understand the multiple interacting molecular mechanisms that are altered during BPS exposure global transcriptome sequencing RNA Seq was performed in embryonic fish to quantify expression levels of transcripts with a high sensitivity and broad genome coverage post BPS treatment19. To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.				BPS 1 1		isolate:biologocal replicate 4\|age:120hpf\|sex:not collected\|tissue:embryo\|collection date:2018 05 01\|geo loc name:China:Guangdong\|BioSampleModel:Model organism or animal	Transcriptomic responses of Bisphenol S	bps050104	bps050104	An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent Santa Clara CA USA with only high quality RNA samples 28 S:18 S=2.02.2 RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen China . The libraries were sequenced at the Beijing Genomics Institute BGI Shenzhen China on a BGISEQ500 platform with 50 bp single end reads under three replicates per treatment group.			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	BGISEQ	BGISEQ-500		SRP237283			BPS_1_1_1.fq.gz BPS_1_1_2.fq.gz	fastq fastq	7040826400.0	70408264.0	BPS 1 1 1.fq.gz	0:100 1:100	A:1915125100;C:1612334047;G:1578924466;T:1933922418;N:520369	100	100	1915125100	1612334047	1578924466	1933922418	520369	SRX7351697	SRS5811183	SRA1010884	Southern University of Science and Technology\|School of Environmental Science and Engineering	Southern University of Science and Technology	1	0.94114		0.13158		0.68903		0.47739		100		B		usable mapping rate	bgi	bgi	unknown	random_priming	unknown	bulk	unknown	unknown	China	2019-12-12	Larval	Larval	Embryo Imprecise	All anatomical structures
55662	55662	SRR10674417	SRX7351696	SRS5811179	SRP237283	PRJNA595113	Transcriptomic responses of Bisphenol S on zebrafish	PRJNA595113	Other	To better understand the multiple interacting molecular mechanisms that are altered during BPS exposure global transcriptome sequencing RNA Seq was performed in embryonic fish to quantify expression levels of transcripts with a high sensitivity and broad genome coverage post BPS treatment19. To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.				BPS 0 1 3		isolate:biologocal replicate 3\|age:120hpf\|sex:not collected\|tissue:embryo\|collection date:2018 05 01\|geo loc name:China:Guangdong\|BioSampleModel:Model organism or animal	Transcriptomic responses of Bisphenol S	bps050103	bps050103	An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent Santa Clara CA USA with only high quality RNA samples 28 S:18 S=2.02.2 RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen China . The libraries were sequenced at the Beijing Genomics Institute BGI Shenzhen China on a BGISEQ500 platform with 50 bp single end reads under three replicates per treatment group.			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	BGISEQ	BGISEQ-500		SRP237283			BPS_0_1_3_1.fq.gz BPS_0_1_3_2.fq.gz	fastq fastq	6992676800.0	69926768.0	BPS 0 1 3 1.fq.gz	0:100 1:100	A:1860627581;C:1643489002;G:1610508221;T:1877536968;N:515028	100	100	1860627581	1643489002	1610508221	1877536968	515028	SRX7351696	SRS5811179	SRA1010884	Southern University of Science and Technology\|School of Environmental Science and Engineering	Southern University of Science and Technology	1	0.94485		0.101		0.68314		0.45711		100		B		usable mapping rate	bgi	bgi	unknown	random_priming	unknown	bulk	unknown	unknown	China	2019-12-12	Larval	Larval	Embryo Imprecise	All anatomical structures
55663	55663	SRR10674418	SRX7351695	SRS5811178	SRP237283	PRJNA595113	Transcriptomic responses of Bisphenol S on zebrafish	PRJNA595113	Other	To better understand the multiple interacting molecular mechanisms that are altered during BPS exposure global transcriptome sequencing RNA Seq was performed in embryonic fish to quantify expression levels of transcripts with a high sensitivity and broad genome coverage post BPS treatment19. To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.				Cntrol3		isolate:biologocal replicate 18\|age:120hpf\|sex:not collected\|tissue:embryo\|collection date:2018 05 01\|geo loc name:China:Guangdong\|BioSampleModel:Model organism or animal	Transcriptomic responses of Bisphenol S	bps050118	bps050118	An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent Santa Clara CA USA with only high quality RNA samples 28 S:18 S=2.02.2 RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen China . The libraries were sequenced at the Beijing Genomics Institute BGI Shenzhen China on a BGISEQ500 platform with 50 bp single end reads under three replicates per treatment group.			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	BGISEQ	BGISEQ-500		SRP237283			Cntrol3_1.fq.gz Cntrol3_2.fq.gz	fastq fastq	6742983200.0	67429832.0	Cntrol3 1.fq.gz	0:100 1:100	A:1801392073;C:1577630219;G:1545614005;T:1817857809;N:489094	100	100	1801392073	1577630219	1545614005	1817857809	489094	SRX7351695	SRS5811178	SRA1010884	Southern University of Science and Technology\|School of Environmental Science and Engineering	Southern University of Science and Technology	1	0.94386		0.10779		0.68832		0.45545		100		B		usable mapping rate	bgi	bgi	unknown	random_priming	unknown	bulk	unknown	unknown	China	2019-12-12	Larval	Larval	Embryo Imprecise	All anatomical structures
55664	55664	SRR10674419	SRX7351694	SRS5811177	SRP237283	PRJNA595113	Transcriptomic responses of Bisphenol S on zebrafish	PRJNA595113	Other	To better understand the multiple interacting molecular mechanisms that are altered during BPS exposure global transcriptome sequencing RNA Seq was performed in embryonic fish to quantify expression levels of transcripts with a high sensitivity and broad genome coverage post BPS treatment19. To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.				Cntrol2		isolate:biologocal replicate 17\|age:120hpf\|sex:not collected\|tissue:embryo\|collection date:2018 05 01\|geo loc name:China:Guangdong\|BioSampleModel:Model organism or animal	Transcriptomic responses of Bisphenol S	bps050117	bps050117	An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent Santa Clara CA USA with only high quality RNA samples 28 S:18 S=2.02.2 RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen China . The libraries were sequenced at the Beijing Genomics Institute BGI Shenzhen China on a BGISEQ500 platform with 50 bp single end reads under three replicates per treatment group.			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	BGISEQ	BGISEQ-500		SRP237283			Cntrol2_1.fq.gz Cntrol2_2.fq.gz	fastq fastq	6750661000.0	67506610.0	Cntrol2 1.fq.gz	0:100 1:100	A:1796606666;C:1585909518;G:1556014239;T:1811284557;N:846020	100	100	1796606666	1585909518	1556014239	1811284557	846020	SRX7351694	SRS5811177	SRA1010884	Southern University of Science and Technology\|School of Environmental Science and Engineering	Southern University of Science and Technology	1	0.94397		0.10007		0.68708		0.47779		100		B		usable mapping rate	bgi	bgi	unknown	random_priming	unknown	bulk	unknown	unknown	China	2019-12-12	Larval	Larval	Embryo Imprecise	All anatomical structures
55665	55665	SRR10674420	SRX7351693	SRS5811174	SRP237283	PRJNA595113	Transcriptomic responses of Bisphenol S on zebrafish	PRJNA595113	Other	To better understand the multiple interacting molecular mechanisms that are altered during BPS exposure global transcriptome sequencing RNA Seq was performed in embryonic fish to quantify expression levels of transcripts with a high sensitivity and broad genome coverage post BPS treatment19. To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.				Cntrol1		isolate:biologocal replicate 16\|age:120hpf\|sex:not collected\|tissue:embryo\|collection date:2018 05 01\|geo loc name:China:Guangdong\|BioSampleModel:Model organism or animal	Transcriptomic responses of Bisphenol S	bps050116	bps050116	An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent Santa Clara CA USA with only high quality RNA samples 28 S:18 S=2.02.2 RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen China . The libraries were sequenced at the Beijing Genomics Institute BGI Shenzhen China on a BGISEQ500 platform with 50 bp single end reads under three replicates per treatment group.			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	BGISEQ	BGISEQ-500		SRP237283			Cntrol1_1.fq.gz Cntrol1_2.fq.gz	fastq fastq	6766663000.0	67666630.0	Cntrol1 1.fq.gz	0:100 1:100	A:1825736389;C:1564390057;G:1532835305;T:1842876742;N:824507	100	100	1825736389	1564390057	1532835305	1842876742	824507	SRX7351693	SRS5811174	SRA1010884	Southern University of Science and Technology\|School of Environmental Science and Engineering	Southern University of Science and Technology	1	0.94047		0.12338		0.68893		0.46407		100		B		usable mapping rate	bgi	bgi	unknown	random_priming	unknown	bulk	unknown	unknown	China	2019-12-12	Larval	Larval	Embryo Imprecise	All anatomical structures
55666	55666	SRR10674421	SRX7351692	SRS5811176	SRP237283	PRJNA595113	Transcriptomic responses of Bisphenol S on zebrafish	PRJNA595113	Other	To better understand the multiple interacting molecular mechanisms that are altered during BPS exposure global transcriptome sequencing RNA Seq was performed in embryonic fish to quantify expression levels of transcripts with a high sensitivity and broad genome coverage post BPS treatment19. To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.				BPS 1000 3		isolate:biologocal replicate 15\|age:120hpf\|sex:not collected\|tissue:embryo\|collection date:2018 05 01\|geo loc name:China:Guangdong\|BioSampleModel:Model organism or animal	Transcriptomic responses of Bisphenol S	bps050115	bps050115	An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent Santa Clara CA USA with only high quality RNA samples 28 S:18 S=2.02.2 RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen China . The libraries were sequenced at the Beijing Genomics Institute BGI Shenzhen China on a BGISEQ500 platform with 50 bp single end reads under three replicates per treatment group.			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	BGISEQ	BGISEQ-500		SRP237283			BPS_1000_3_1.fq.gz BPS_1000_3_2.fq.gz	fastq fastq	6507622200.0	65076222.0	BPS 1000 3 1.fq.gz	0:100 1:100	A:1735402948;C:1525938362;G:1493787016;T:1751945676;N:548198	100	100	1735402948	1525938362	1493787016	1751945676	548198	SRX7351692	SRS5811176	SRA1010884	Southern University of Science and Technology\|School of Environmental Science and Engineering	Southern University of Science and Technology	1	0.94304		0.10593		0.6842		0.46348		100		B		usable mapping rate	bgi	bgi	unknown	random_priming	unknown	bulk	unknown	unknown	China	2019-12-12	Larval	Larval	Embryo Imprecise	All anatomical structures
55667	55667	SRR10674422	SRX7351691	SRS5811173	SRP237283	PRJNA595113	Transcriptomic responses of Bisphenol S on zebrafish	PRJNA595113	Other	To better understand the multiple interacting molecular mechanisms that are altered during BPS exposure global transcriptome sequencing RNA Seq was performed in embryonic fish to quantify expression levels of transcripts with a high sensitivity and broad genome coverage post BPS treatment19. To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.				BPS 1000 2		isolate:biologocal replicate 14\|age:120hpf\|sex:not collected\|tissue:embryo\|collection date:2018 05 01\|geo loc name:China:Guangdong\|BioSampleModel:Model organism or animal	Transcriptomic responses of Bisphenol S	bps050114	bps050114	An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent Santa Clara CA USA with only high quality RNA samples 28 S:18 S=2.02.2 RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen China . The libraries were sequenced at the Beijing Genomics Institute BGI Shenzhen China on a BGISEQ500 platform with 50 bp single end reads under three replicates per treatment group.			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	BGISEQ	BGISEQ-500		SRP237283			BPS_1000_2_1.fq.gz BPS_1000_2_2.fq.gz	fastq fastq	6740712000.0	67407120.0	BPS 1000 2 1.fq.gz	0:100 1:100	A:1816870993;C:1562402111;G:1527381283;T:1833284067;N:773546	100	100	1816870993	1562402111	1527381283	1833284067	773546	SRX7351691	SRS5811173	SRA1010884	Southern University of Science and Technology\|School of Environmental Science and Engineering	Southern University of Science and Technology	1	0.94327		0.11511		0.70033		0.4551		100		B		usable mapping rate	bgi	bgi	unknown	random_priming	unknown	bulk	unknown	unknown	China	2019-12-12	Larval	Larval	Embryo Imprecise	All anatomical structures
55668	55668	SRR10674423	SRX7351690	SRS5811175	SRP237283	PRJNA595113	Transcriptomic responses of Bisphenol S on zebrafish	PRJNA595113	Other	To better understand the multiple interacting molecular mechanisms that are altered during BPS exposure global transcriptome sequencing RNA Seq was performed in embryonic fish to quantify expression levels of transcripts with a high sensitivity and broad genome coverage post BPS treatment19. To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.				BPS 1000 1		isolate:biologocal replicate 13\|age:120hpf\|sex:not collected\|tissue:embryo\|collection date:2018 05 01\|geo loc name:China:Guangdong\|BioSampleModel:Model organism or animal	Transcriptomic responses of Bisphenol S	bps050113	bps050113	An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent Santa Clara CA USA with only high quality RNA samples 28 S:18 S=2.02.2 RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen China . The libraries were sequenced at the Beijing Genomics Institute BGI Shenzhen China on a BGISEQ500 platform with 50 bp single end reads under three replicates per treatment group.			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	BGISEQ	BGISEQ-500		SRP237283			BPS_1000_1_1.fq.gz BPS_1000_1_2.fq.gz	fastq fastq	6727750400.0	67277504.0	BPS 1000 1 1.fq.gz	0:100 1:100	A:1803578734;C:1568712705;G:1535618959;T:1819016739;N:823263	100	100	1803578734	1568712705	1535618959	1819016739	823263	SRX7351690	SRS5811175	SRA1010884	Southern University of Science and Technology\|School of Environmental Science and Engineering	Southern University of Science and Technology	1	0.94457		0.1118		0.69087		0.46815		100		B		usable mapping rate	bgi	bgi	unknown	random_priming	unknown	bulk	unknown	unknown	China	2019-12-12	Larval	Larval	Embryo Imprecise	All anatomical structures
55669	55669	SRR10674424	SRX7351689	SRS5811172	SRP237283	PRJNA595113	Transcriptomic responses of Bisphenol S on zebrafish	PRJNA595113	Other	To better understand the multiple interacting molecular mechanisms that are altered during BPS exposure global transcriptome sequencing RNA Seq was performed in embryonic fish to quantify expression levels of transcripts with a high sensitivity and broad genome coverage post BPS treatment19. To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.				BPS 100 3		isolate:biologocal replicate 12\|age:120hpf\|sex:not collected\|tissue:embryo\|collection date:2018 05 01\|geo loc name:China:Guangdong\|BioSampleModel:Model organism or animal	Transcriptomic responses of Bisphenol S	bps050112	bps050112	An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent Santa Clara CA USA with only high quality RNA samples 28 S:18 S=2.02.2 RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen China . The libraries were sequenced at the Beijing Genomics Institute BGI Shenzhen China on a BGISEQ500 platform with 50 bp single end reads under three replicates per treatment group.			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	BGISEQ	BGISEQ-500		SRP237283			BPS_100_3_1.fq.gz BPS_100_3_2.fq.gz	fastq fastq	6962431800.0	69624318.0	BPS 100 3 1.fq.gz	0:100 1:100	A:1865300693;C:1624120289;G:1585691091;T:1886538935;N:780792	100	100	1865300693	1624120289	1585691091	1886538935	780792	SRX7351689	SRS5811172	SRA1010884	Southern University of Science and Technology\|School of Environmental Science and Engineering	Southern University of Science and Technology	1	0.94581		0.10195		0.68288		0.47174		100		B		usable mapping rate	bgi	bgi	unknown	random_priming	unknown	bulk	unknown	unknown	China	2019-12-12	Larval	Larval	Embryo Imprecise	All anatomical structures
55670	55670	SRR10674425	SRX7351688	SRS5811171	SRP237283	PRJNA595113	Transcriptomic responses of Bisphenol S on zebrafish	PRJNA595113	Other	To better understand the multiple interacting molecular mechanisms that are altered during BPS exposure global transcriptome sequencing RNA Seq was performed in embryonic fish to quantify expression levels of transcripts with a high sensitivity and broad genome coverage post BPS treatment19. To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.				BPS 100 2		isolate:biologocal replicate 11\|age:120hpf\|sex:not collected\|tissue:embryo\|collection date:2018 05 01\|geo loc name:China:Guangdong\|BioSampleModel:Model organism or animal	Transcriptomic responses of Bisphenol S	bps050111	bps050111	An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent Santa Clara CA USA with only high quality RNA samples 28 S:18 S=2.02.2 RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen China . The libraries were sequenced at the Beijing Genomics Institute BGI Shenzhen China on a BGISEQ500 platform with 50 bp single end reads under three replicates per treatment group.			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	BGISEQ	BGISEQ-500		SRP237283			BPS_100_2_1.fq.gz BPS_100_2_2.fq.gz	fastq fastq	7201035800.0	72010358.0	BPS 100 2 1.fq.gz	0:100 1:100	A:2115590854;C:1489181336;G:1459936470;T:2135514629;N:812511	100	100	2115590854	1489181336	1459936470	2135514629	812511	SRX7351688	SRS5811171	SRA1010884	Southern University of Science and Technology\|School of Environmental Science and Engineering	Southern University of Science and Technology	1	0.90678		0.29289		0.70735		0.49554		100		B		usable mapping rate	bgi	bgi	unknown	random_priming	unknown	bulk	unknown	unknown	China	2019-12-12	Larval	Larval	Embryo Imprecise	All anatomical structures
55671	55671	SRR10674426	SRX7351687	SRS5811170	SRP237283	PRJNA595113	Transcriptomic responses of Bisphenol S on zebrafish	PRJNA595113	Other	To better understand the multiple interacting molecular mechanisms that are altered during BPS exposure global transcriptome sequencing RNA Seq was performed in embryonic fish to quantify expression levels of transcripts with a high sensitivity and broad genome coverage post BPS treatment19. To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.				BPS 0 1 2		isolate:biologocal replicate 2\|age:120hpf\|sex:not collected\|tissue:embryo\|collection date:2018 05 01\|geo loc name:China:Guangdong\|BioSampleModel:Model organism or animal	Transcriptomic responses of Bisphenol S	bps050102	bps050102	An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent Santa Clara CA USA with only high quality RNA samples 28 S:18 S=2.02.2 RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen China . The libraries were sequenced at the Beijing Genomics Institute BGI Shenzhen China on a BGISEQ500 platform with 50 bp single end reads under three replicates per treatment group.			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	BGISEQ	BGISEQ-500		SRP237283			BPS_0_1_2_1.fq.gz BPS_0_1_2_2.fq.gz	fastq fastq	7022382800.0	70223828.0	BPS 0 1 2 1.fq.gz	0:100 1:100	A:1853514579;C:1663935080;G:1635277415;T:1869136960;N:518766	100	100	1853514579	1663935080	1635277415	1869136960	518766	SRX7351687	SRS5811170	SRA1010884	Southern University of Science and Technology\|School of Environmental Science and Engineering	Southern University of Science and Technology	1	0.94712		0.09313		0.6814		0.47256		100		B		usable mapping rate	bgi	bgi	unknown	random_priming	unknown	bulk	unknown	unknown	China	2019-12-12	Larval	Larval	Embryo Imprecise	All anatomical structures
55672	55672	SRR10674427	SRX7351686	SRS5811167	SRP237283	PRJNA595113	Transcriptomic responses of Bisphenol S on zebrafish	PRJNA595113	Other	To better understand the multiple interacting molecular mechanisms that are altered during BPS exposure global transcriptome sequencing RNA Seq was performed in embryonic fish to quantify expression levels of transcripts with a high sensitivity and broad genome coverage post BPS treatment19. To better understand sensitivities of fish to BPS toxicity and the mechanisms that regulate expression of transcripts altered by BPS exposure we evaluated morphological and transcriptional effects in using environmentally relevant concentrations.				BPS 0 1 1		isolate:biologocal replicate 1\|age:120hpf\|sex:not collected\|tissue:embryo\|collection date:2018 05 01\|geo loc name:China:Guangdong\|BioSampleModel:Model organism or animal	Transcriptomic responses of Bisphenol S	bps050101	bps050101	An Agilent 2100 bioanalyzer chip was used to determine RNA integrity score Agilent Santa Clara CA USA with only high quality RNA samples 28 S:18 S=2.02.2 RIN>9.0 used to construct libraries following a standardized procedure at the Beijing Genome Institute BGI; Shenzhen China . The libraries were sequenced at the Beijing Genomics Institute BGI Shenzhen China on a BGISEQ500 platform with 50 bp single end reads under three replicates per treatment group.			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	BGISEQ	BGISEQ-500		SRP237283			BPS_0_1_1_1.fq.gz BPS_0_1_1_2.fq.gz	fastq fastq	7013900400.0	70139004.0	BPS 0 1 1 1.fq.gz	0:100 1:100	A:1885826391;C:1629114228;G:1597181244;T:1901261511;N:517026	100	100	1885826391	1629114228	1597181244	1901261511	517026	SRX7351686	SRS5811167	SRA1010884	Southern University of Science and Technology\|School of Environmental Science and Engineering	Southern University of Science and Technology	1	0.94226		0.11616		0.69014		0.45679		100		B		usable mapping rate	bgi	bgi	unknown	random_priming	unknown	bulk	unknown	unknown	China	2019-12-12	Larval	Larval	Embryo Imprecise	All anatomical structures
60496	60496	SRR12328853	SRX8829078	SRS7048444	SRP273655	PRJNA648800	mRNA and miRNA Seq in offspring post parental exposure to an antibiotic mixturemRNA	PRJNA648800	Other	Zebrafish embryos were exposed to environmentally relevant levels 1 and 100 ug/L of antibiotic mixtures 15 of the most commonly detected antibiotics for 150 days until sexual maturation. miRNA mRNA network analysis in offspring post parental exposure to an antibiotic mixture.			C2	C2 C2 2 4		replicate:biological replicate 2\|strain:AB\|isolate:C2\|breed:not applicable\|cultivar:not applicable\|ecotype:not applicable\|age:not applicable\|dev stage:not applicable\|sex:pooled male and female\|tissue:the whole\|collection date:2019 11 01\|geo loc name:China: Shenzhen Guangdong\|phenotype:100ug/L\|BioSampleModel:Model organism or animal	RNA seq of zebrafish	C2C220200712	C2C220200712	RNA seq of zebrafish in different conditions			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	BGISEQ	BGISEQ-500		SRP273655			C2_C2_2_4_1.fq.gz C2_C2_2_4_2.fq.gz	fastq fastq	6974294600.0	69742946.0	C2 C2 2 4 1.fq.gz	0:100 1:100	A:2057162032;C:1418016219;G:1425580374;T:2073535975;N:0	100	100	2057162032	1418016219	1425580374	2073535975	0	SRX8829078	SRS7048444	SRA1103962	Southern University of Science and Technology\|School of Environmental Science and Engineering	Southern University of Science and Technology	1	0.93171		0.17455		0.71626		0.54961		100		B		usable mapping rate	bgi	bgi	unknown	random_priming	unknown	bulk	unknown	unknown	China	2020-07-27	Undetermined	Embryo	Whole Organism	All anatomical structures
60497	60497	SRR12328854	SRX8829077	SRS7048443	SRP273655	PRJNA648800	mRNA and miRNA Seq in offspring post parental exposure to an antibiotic mixturemRNA	PRJNA648800	Other	Zebrafish embryos were exposed to environmentally relevant levels 1 and 100 ug/L of antibiotic mixtures 15 of the most commonly detected antibiotics for 150 days until sexual maturation. miRNA mRNA network analysis in offspring post parental exposure to an antibiotic mixture.			C2	C2 C2 1 4		replicate:biological replicate 1\|strain:AB\|isolate:C2\|breed:not applicable\|cultivar:not applicable\|ecotype:not applicable\|age:not applicable\|dev stage:not applicable\|sex:pooled male and female\|tissue:the whole\|collection date:2019 11 01\|geo loc name:China: Shenzhen Guangdong\|phenotype:100ug/L\|BioSampleModel:Model organism or animal	RNA seq of zebrafish	C2C220200711	C2C220200711	RNA seq of zebrafish in different conditions			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	BGISEQ	BGISEQ-500		SRP273655			C2_C2_1_4_2.fq.gz C2_C2_1_4_1.fq.gz	fastq fastq	6942905200.0	69429052.0	C2 C2 1 4 1.fq.gz	0:100 1:100	A:2025129308;C:1433430820;G:1434784226;T:2049560846;N:0	100	100	2025129308	1433430820	1434784226	2049560846	0	SRX8829077	SRS7048443	SRA1103962	Southern University of Science and Technology\|School of Environmental Science and Engineering	Southern University of Science and Technology	1	0.93211		0.16662		0.71001		0.53674		100		B		usable mapping rate	bgi	bgi	unknown	random_priming	unknown	bulk	unknown	unknown	China	2020-07-27	Undetermined	Embryo	Whole Organism	All anatomical structures
60498	60498	SRR12328855	SRX8829076	SRS7048442	SRP273655	PRJNA648800	mRNA and miRNA Seq in offspring post parental exposure to an antibiotic mixturemRNA	PRJNA648800	Other	Zebrafish embryos were exposed to environmentally relevant levels 1 and 100 ug/L of antibiotic mixtures 15 of the most commonly detected antibiotics for 150 days until sexual maturation. miRNA mRNA network analysis in offspring post parental exposure to an antibiotic mixture.			C1	C1 C1 2 4		replicate:biological replicate 2\|strain:AB\|isolate:C1\|breed:not applicable\|cultivar:not applicable\|ecotype:not applicable\|age:not applicable\|dev stage:not applicable\|sex:pooled male and female\|tissue:the whole\|collection date:2019 11 01\|geo loc name:China: Shenzhen Guangdong\|phenotype:1ug/L\|BioSampleModel:Model organism or animal	RNA seq of zebrafish	C1C120200712	C1C120200712	RNA seq of zebrafish in different conditions			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	BGISEQ	BGISEQ-500		SRP273655			C1_C1_2_4_1.fq.gz C1_C1_2_4_2.fq.gz	fastq fastq	6973657600.0	69736576.0	C1 C1 2 4 1.fq.gz	0:100 1:100	A:2050440259;C:1423350359;G:1423015668;T:2076851314;N:0	100	100	2050440259	1423350359	1423015668	2076851314	0	SRX8829076	SRS7048442	SRA1103962	Southern University of Science and Technology\|School of Environmental Science and Engineering	Southern University of Science and Technology	1	0.92911		0.1877		0.72025		0.58085		100		B		usable mapping rate	bgi	bgi	unknown	random_priming	unknown	bulk	unknown	unknown	China	2020-07-27	Undetermined	Embryo	Whole Organism	All anatomical structures
60499	60499	SRR12328856	SRX8829075	SRS7048441	SRP273655	PRJNA648800	mRNA and miRNA Seq in offspring post parental exposure to an antibiotic mixturemRNA	PRJNA648800	Other	Zebrafish embryos were exposed to environmentally relevant levels 1 and 100 ug/L of antibiotic mixtures 15 of the most commonly detected antibiotics for 150 days until sexual maturation. miRNA mRNA network analysis in offspring post parental exposure to an antibiotic mixture.			C1	C1 C1 1 4		replicate:biological replicate 1\|strain:AB\|isolate:C1\|breed:not applicable\|cultivar:not applicable\|ecotype:not applicable\|age:not applicable\|dev stage:not applicable\|sex:pooled male and female\|tissue:the whole\|collection date:2019 11 01\|geo loc name:China: Shenzhen Guangdong\|phenotype:1ug/L\|BioSampleModel:Model organism or animal	RNA seq of zebrafish	C1C120200711	C1C120200711	RNA seq of zebrafish in different conditions			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	BGISEQ	BGISEQ-500		SRP273655			C1_C1_1_4_1.fq.gz C1_C1_1_4_2.fq.gz	fastq fastq	6746729200.0	67467292.0	C1 C1 1 4 1.fq.gz	0:100 1:100	A:2004203843;C:1356765594;G:1357760526;T:2027999237;N:0	100	100	2004203843	1356765594	1357760526	2027999237	0	SRX8829075	SRS7048441	SRA1103962	Southern University of Science and Technology\|School of Environmental Science and Engineering	Southern University of Science and Technology	1	0.92733		0.19903		0.72228		0.59259		100		B		usable mapping rate	bgi	bgi	unknown	random_priming	unknown	bulk	unknown	unknown	China	2020-07-27	Undetermined	Embryo	Whole Organism	All anatomical structures
60500	60500	SRR12328857	SRX8829074	SRS7048440	SRP273655	PRJNA648800	mRNA and miRNA Seq in offspring post parental exposure to an antibiotic mixturemRNA	PRJNA648800	Other	Zebrafish embryos were exposed to environmentally relevant levels 1 and 100 ug/L of antibiotic mixtures 15 of the most commonly detected antibiotics for 150 days until sexual maturation. miRNA mRNA network analysis in offspring post parental exposure to an antibiotic mixture.			C0	C0 C0 2 4		replicate:biological replicate 2\|strain:AB\|isolate:C0\|breed:not applicable\|cultivar:not applicable\|ecotype:not applicable\|age:not applicable\|dev stage:not applicable\|sex:pooled male and female\|tissue:the whole\|collection date:2019 11 01\|geo loc name:China: Shenzhen Guangdong\|phenotype:0ug/L\|BioSampleModel:Model organism or animal	RNA seq of zebrafish	C0C020200712	C0C020200712	RNA seq of zebrafish in different conditions			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	BGISEQ	BGISEQ-500		SRP273655			C0_C0_2_4_1.fq.gz C0_C0_2_4_2.fq.gz	fastq fastq	6924724800.0	69247248.0	C0 C0 2 4 1.fq.gz	0:100 1:100	A:1974618038;C:1471821932;G:1482725702;T:1995559128;N:0	100	100	1974618038	1471821932	1482725702	1995559128	0	SRX8829074	SRS7048440	SRA1103962	Southern University of Science and Technology\|School of Environmental Science and Engineering	Southern University of Science and Technology	1	0.93473		0.14676		0.69649		0.50413		100		B		usable mapping rate	bgi	bgi	unknown	random_priming	unknown	bulk	unknown	unknown	China	2020-07-27	Undetermined	Embryo	Whole Organism	All anatomical structures
60501	60501	SRR12328858	SRX8829073	SRS7048439	SRP273655	PRJNA648800	mRNA and miRNA Seq in offspring post parental exposure to an antibiotic mixturemRNA	PRJNA648800	Other	Zebrafish embryos were exposed to environmentally relevant levels 1 and 100 ug/L of antibiotic mixtures 15 of the most commonly detected antibiotics for 150 days until sexual maturation. miRNA mRNA network analysis in offspring post parental exposure to an antibiotic mixture.			C0	C0 C0 1 4		replicate:biological replicate 1\|strain:AB\|isolate:C0\|breed:not applicable\|cultivar:not applicable\|ecotype:not applicable\|age:not applicable\|dev stage:not applicable\|sex:pooled male and female\|tissue:the whole\|collection date:2019 11 01\|geo loc name:China: Shenzhen Guangdong\|phenotype:0ug/L\|BioSampleModel:Model organism or animal	RNA seq of zebrafish	C0C020200711	C0C020200711	RNA seq of zebrafish in different conditions			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	BGISEQ	BGISEQ-500		SRP273655			C0_C0_1_4_1.fq.gz C0_C0_1_4_2.fq.gz	fastq fastq	6899505600.0	68995056.0	C0 C0 1 4 1.fq.gz	0:100 1:100	A:1957459931;C:1477351919;G:1482435319;T:1982258431;N:0	100	100	1957459931	1477351919	1482435319	1982258431	0	SRX8829073	SRS7048439	SRA1103962	Southern University of Science and Technology\|School of Environmental Science and Engineering	Southern University of Science and Technology	1	0.93567		0.14057		0.6883		0.48707		100		B		usable mapping rate	bgi	bgi	unknown	random_priming	unknown	bulk	unknown	unknown	China	2020-07-27	Undetermined	Embryo	Whole Organism	All anatomical structures
62699	62699	SRR13320609	SRX9748089	SRS7936232	SRP299308	PRJNA688414	WT and oxr1b mutant zebrafish sequencing	PRJNA688414	Other	To clarify the role of oxr1b in regulating genome wide gene expression during early oxidative stress response the comparative transcriptome analysis of WT and oxr1b / mutant zebrafish larvae were performed by RNA seq.			danio rerio	zebrafish larval		strain:AB line\|isolate:n1\|breed:wt type and mutant\|cultivar:no\|ecotype:Chongqing\|age:5 dpf\|dev stage:larval stage\|sex:not collected\|tissue:whole fish\|BioSampleModel:Model organism or animal	Transcriptome Analysis the Early Molecular Response of Oxr1b / Mutant Zebrafish Larvae to Oxidative Stress by RNA Seq	MJ20201107019	MJ20201107019	The total RNA samples were isolated from WT and oxr1b / mutant zebrafish larvae by the RNAiso Plus kit			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina NovaSeq 6000		SRP299308			WT_H2O2.R1.fastq.gz WT_H2O2.R2.fastq.gz WT_ctrl.R1.fastq.gz WT_ctrl.R2.fastq.gz moxr1b_H2O2.R1.fastq.gz moxr1b_H2O2.R2.fastq.gz moxr1b_ctrl.R1.fastq.gz moxr1b_ctrl.R2.fastq.gz	fastq fastq fastq fastq fastq fastq fastq fastq	30986524572.0	102604386.0	WT H2O2.R1.fastq.gz	0:151 1:151	A:8204027517;C:7238523175;G:7419111448;T:8124456513;N:405919	151	151	8204027517	7238523175	7419111448	8124456513	405919	SRX9748089	SRS7936232	SRA1178651	Southwest University\|College of Fisheries	Southwest University	2	0.94082	0.91236	0.08994	0.08673	0.65997	0.66478	0.48105	0.48139	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2020-12-29	Larval	Larval	Whole Organism	All anatomical structures
64161	64161	SRR14308450	SRX10663886	SRS8758306	SRP315996	PRJNA724011	BDE 47 zebrafish 24hpf 4dpf	PRJNA724011	Other					D1		strain:AB10\|age:24hpf10\|dev stage:24hpf10\|sex:pooled male and female\|tissue:wholefish\|BioSampleModel:Model organism or animal	AB10	L10	L10	paried end seq			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina MiSeq		SRP315996			D1.raw_1.fastq.gz D1.raw_2.fastq.gz	fastq fastq	6493890000.0	21646300.0	D1.raw 1.fastq.gz	0:150 1:150	A:1744755708;C:1484305355;G:1549325281;T:1715269253;N:234403	150	150	1744755708	1484305355	1549325281	1715269253	234403	SRX10663886	SRS8758306	SRA1222808	Shantou University\|Medical Colleg	Shantou University	2	0.94046	0.93893	0.09092	0.08953	0.69179	0.6957	0.47163	0.4711	150	150	B	B	biological fallback assumption	illumina	miseq	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-04-27	Pharyngula	Embryo	Whole Organism	All anatomical structures
64163	64163	SRR14308452	SRX10663884	SRS8758304	SRP315996	PRJNA724011	BDE 47 zebrafish 24hpf 4dpf	PRJNA724011	Other					C2		strain:AB8\|age:24hpf8\|dev stage:24hpf8\|sex:pooled male and female\|tissue:wholefish\|BioSampleModel:Model organism or animal	AB8	L8	L8	paried end seq			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina MiSeq		SRP315996			C2.raw_1.fastq.gz C2.raw_2.fastq.gz	fastq fastq	5887783500.0	19625945.0	C2.raw 1.fastq.gz	0:150 1:150	A:1539979565;C:1392825547;G:1451253488;T:1503541801;N:183099	150	150	1539979565	1392825547	1451253488	1503541801	183099	SRX10663884	SRS8758304	SRA1222808	Shantou University\|Medical Colleg	Shantou University	2	0.94543	0.94466	0.06666	0.06614	0.73342	0.73468	0.46413	0.46432	150	150	B	B	biological fallback assumption	illumina	miseq	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-04-27	Pharyngula	Embryo	Whole Organism	All anatomical structures
64164	64164	SRR14308453	SRX10663883	SRS8758303	SRP315996	PRJNA724011	BDE 47 zebrafish 24hpf 4dpf	PRJNA724011	Other					C1		strain:AB7\|age:24hpf7\|dev stage:24hpf7\|sex:pooled male and female\|tissue:wholefish\|BioSampleModel:Model organism or animal	AB7	L7	L7	paried end seq			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina MiSeq		SRP315996			C1.raw_1.fastq.gz C1.raw_2.fastq.gz	fastq fastq	5878215900.0	19594053.0	C1.raw 1.fastq.gz	0:150 1:150	A:1567876584;C:1356626287;G:1407943115;T:1545550803;N:219111	150	150	1567876584	1356626287	1407943115	1545550803	219111	SRX10663883	SRS8758303	SRA1222808	Shantou University\|Medical Colleg	Shantou University	2	0.93508	0.93337	0.08056	0.08002	0.74024	0.74276	0.47159	0.47142	150	150	B	B	biological fallback assumption	illumina	miseq	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-04-27	Pharyngula	Embryo	Whole Organism	All anatomical structures
64165	64165	SRR14308454	SRX10663882	SRS8758302	SRP315996	PRJNA724011	BDE 47 zebrafish 24hpf 4dpf	PRJNA724011	Other					B3		strain:AB6\|age:24hpf6\|dev stage:24hpf6\|sex:pooled male and female\|tissue:wholefish\|BioSampleModel:Model organism or animal	AB6	L6	L6	paried end seq			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina MiSeq		SRP315996			B3.raw_1.fastq.gz B3.raw_2.fastq.gz	fastq fastq	5684530200.0	18948434.0	B3.raw 1.fastq.gz	0:150 1:150	A:1468959527;C:1362254368;G:1409533547;T:1443570573;N:212185	150	150	1468959527	1362254368	1409533547	1443570573	212185	SRX10663882	SRS8758302	SRA1222808	Shantou University\|Medical Colleg	Shantou University	2	0.74739	0.74464	0.07384	0.07335	0.72671	0.72977	0.46742	0.47358	150	150	B	B	biological fallback assumption	illumina	miseq	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-04-27	Pharyngula	Embryo	Whole Organism	All anatomical structures
64166	64166	SRR14308455	SRX10663881	SRS8758301	SRP315996	PRJNA724011	BDE 47 zebrafish 24hpf 4dpf	PRJNA724011	Other					B2		strain:AB5\|age:24hpf5\|dev stage:24hpf5\|sex:pooled male and female\|tissue:wholefish\|BioSampleModel:Model organism or animal	AB5	L5	L5	paried end seq			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina MiSeq		SRP315996			B2.raw_1.fastq.gz B2.raw_2.fastq.gz	fastq fastq	6605542500.0	22018475.0	B2.raw 1.fastq.gz	0:150 1:150	A:1776549620;C:1511937358;G:1570716255;T:1746097273;N:241994	150	150	1776549620	1511937358	1570716255	1746097273	241994	SRX10663881	SRS8758301	SRA1222808	Shantou University\|Medical Colleg	Shantou University	2	0.94479	0.94309	0.09199	0.09117	0.7024	0.70445	0.46871	0.46925	150	150	B	B	biological fallback assumption	illumina	miseq	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-04-27	Pharyngula	Embryo	Whole Organism	All anatomical structures
64167	64167	SRR14308456	SRX10663880	SRS8758300	SRP315996	PRJNA724011	BDE 47 zebrafish 24hpf 4dpf	PRJNA724011	Other					B1		strain:AB4\|age:24hpf4\|dev stage:24hpf4\|sex:pooled male and female\|tissue:wholefish\|BioSampleModel:Model organism or animal	AB4	L4	L4	paried end seq			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina MiSeq		SRP315996			B1.raw_1.fastq.gz B1.raw_2.fastq.gz	fastq fastq	5853655500.0	19512185.0	B1.raw 1.fastq.gz	0:150 1:150	A:1571488140;C:1342134462;G:1393752149;T:1546065949;N:214800	150	150	1571488140	1342134462	1393752149	1546065949	214800	SRX10663880	SRS8758300	SRA1222808	Shantou University\|Medical Colleg	Shantou University	2	0.94318	0.94153	0.08642	0.08621	0.7024	0.70508	0.46359	0.46397	150	150	B	B	biological fallback assumption	illumina	miseq	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-04-27	Pharyngula	Embryo	Whole Organism	All anatomical structures
64168	64168	SRR14308457	SRX10663879	SRS8758299	SRP315996	PRJNA724011	BDE 47 zebrafish 24hpf 4dpf	PRJNA724011	Other					DD3		strain:AB24\|age:24hpf21\|dev stage:24hpf21\|sex:pooled male and female\|tissue:wholefish\|BioSampleModel:Model organism or animal	AB24	L24	L24	paried end seq			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina MiSeq		SRP315996			DD3.raw_1.fastq.gz DD3.raw_2.fastq.gz	fastq fastq	7608806100.0	25362687.0	DD3.raw 1.fastq.gz	0:150 1:150	A:2042994601;C:1734375022;G:1812166219;T:2018988826;N:281432	150	150	2042994601	1734375022	1812166219	2018988826	281432	SRX10663879	SRS8758299	SRA1222808	Shantou University\|Medical Colleg	Shantou University	2	0.94225	0.94109	0.10828	0.10717	0.67436	0.6776	0.47781	0.48362	150	150	B	B	biological fallback assumption	illumina	miseq	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-04-27	Pharyngula	Embryo	Whole Organism	All anatomical structures
64169	64169	SRR14308458	SRX10663878	SRS8758298	SRP315996	PRJNA724011	BDE 47 zebrafish 24hpf 4dpf	PRJNA724011	Other					DD2		strain:AB23\|age:24hpf21\|dev stage:24hpf21\|sex:pooled male and female\|tissue:wholefish\|BioSampleModel:Model organism or animal	AB23	L23	L23	paried end seq			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina MiSeq		SRP315996			DD2.raw_1.fastq.gz DD2.raw_2.fastq.gz	fastq fastq	8917386000.0	29724620.0	DD2.raw 1.fastq.gz	0:150 1:150	A:2348537193;C:2056372655;G:2265284593;T:2246861797;N:329762	150	150	2348537193	2056372655	2265284593	2246861797	329762	SRX10663878	SRS8758298	SRA1222808	Shantou University\|Medical Colleg	Shantou University	2	0.94502	0.94397	0.09162	0.09061	0.67444	0.67718	0.47862	0.47594	150	150	B	B	biological fallback assumption	illumina	miseq	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-04-27	Pharyngula	Embryo	Whole Organism	All anatomical structures
64170	64170	SRR14308459	SRX10663877	SRS8758297	SRP315996	PRJNA724011	BDE 47 zebrafish 24hpf 4dpf	PRJNA724011	Other					DD1		strain:AB22\|age:24hpf21\|dev stage:24hpf21\|sex:pooled male and female\|tissue:wholefish\|BioSampleModel:Model organism or animal	AB22	L22	L22	paried end seq			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina MiSeq		SRP315996			DD1.raw_1.fastq.gz DD1.raw_2.fastq.gz	fastq fastq	9206423700.0	30688079.0	DD1.raw 1.fastq.gz	0:150 1:150	A:2472225392;C:2105587795;G:2227426250;T:2400846522;N:337741	150	150	2472225392	2105587795	2227426250	2400846522	337741	SRX10663877	SRS8758297	SRA1222808	Shantou University\|Medical Colleg	Shantou University	2	0.94554	0.94388	0.09791	0.09713	0.67176	0.67608	0.47029	0.46751	150	150	B	B	biological fallback assumption	illumina	miseq	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-04-26	Pharyngula	Embryo	Whole Organism	All anatomical structures
64171	64171	SRR14308460	SRX10663876	SRS8758296	SRP315996	PRJNA724011	BDE 47 zebrafish 24hpf 4dpf	PRJNA724011	Other					CC3		strain:AB21\|age:24hpf21\|dev stage:24hpf21\|sex:pooled male and female\|tissue:wholefish\|BioSampleModel:Model organism or animal	AB21	L21	L21	paried end seq			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina MiSeq		SRP315996			CC3.raw_1.fastq.gz CC3.raw_2.fastq.gz	fastq fastq	7960518600.0	26535062.0	CC3.raw 1.fastq.gz	0:150 1:150	A:2140265475;C:1813420444;G:1929113445;T:2077420579;N:298657	150	150	2140265475	1813420444	1929113445	2077420579	298657	SRX10663876	SRS8758296	SRA1222808	Shantou University\|Medical Colleg	Shantou University	2	0.94251	0.94195	0.10311	0.10286	0.66703	0.66916	0.47505	0.4745	150	150	B	B	biological fallback assumption	illumina	miseq	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-04-27	Pharyngula	Embryo	Whole Organism	All anatomical structures
64172	64172	SRR14308461	SRX10663875	SRS8758295	SRP315996	PRJNA724011	BDE 47 zebrafish 24hpf 4dpf	PRJNA724011	Other					A3		strain:AB3\|age:24hpf3\|dev stage:24hpf3\|sex:pooled male and female\|tissue:wholefish\|BioSampleModel:Model organism or animal	AB3	L3	L3	paried end seq			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina MiSeq		SRP315996			A3.raw_1.fastq.gz A3.raw_2.fastq.gz	fastq fastq	6501644400.0	21672148.0	A3.raw 1.fastq.gz	0:150 1:150	A:1749736007;C:1484391807;G:1544667394;T:1722602072;N:247120	150	150	1749736007	1484391807	1544667394	1722602072	247120	SRX10663875	SRS8758295	SRA1222808	Shantou University\|Medical Colleg	Shantou University	2	0.93166	0.92874	0.09361	0.09274	0.69033	0.69382	0.4671	0.47232	150	150	B	B	biological fallback assumption	illumina	miseq	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-04-27	Pharyngula	Embryo	Whole Organism	All anatomical structures
64173	64173	SRR14308462	SRX10663874	SRS8758294	SRP315996	PRJNA724011	BDE 47 zebrafish 24hpf 4dpf	PRJNA724011	Other					CC2		strain:AB20\|age:24hpf20\|dev stage:24hpf20\|sex:pooled male and female\|tissue:wholefish\|BioSampleModel:Model organism or animal	AB20	L20	L20	paried end seq			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina MiSeq		SRP315996			CC2.raw_1.fastq.gz CC2.raw_2.fastq.gz	fastq fastq	6983705700.0	23279019.0	CC2.raw 1.fastq.gz	0:150 1:150	A:1893999424;C:1578088530;G:1645506692;T:1865862107;N:248947	150	150	1893999424	1578088530	1645506692	1865862107	248947	SRX10663874	SRS8758294	SRA1222808	Shantou University\|Medical Colleg	Shantou University	2	0.94027	0.93898	0.11339	0.11255	0.66687	0.67044	0.47404	0.47154	150	150	B	B	biological fallback assumption	illumina	miseq	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-04-27	Pharyngula	Embryo	Whole Organism	All anatomical structures
64174	64174	SRR14308463	SRX10663873	SRS8758293	SRP315996	PRJNA724011	BDE 47 zebrafish 24hpf 4dpf	PRJNA724011	Other					CC1		strain:AB19\|age:24hpf19\|dev stage:24hpf19\|sex:pooled male and female\|tissue:wholefish\|BioSampleModel:Model organism or animal	AB19	L19	L19	paried end seq			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina MiSeq		SRP315996			CC1.raw_1.fastq.gz CC1.raw_2.fastq.gz	fastq fastq	6085625100.0	20285417.0	CC1.raw 1.fastq.gz	0:150 1:150	A:1649108440;C:1377973381;G:1437131820;T:1621215684;N:195775	150	150	1649108440	1377973381	1437131820	1621215684	195775	SRX10663873	SRS8758293	SRA1222808	Shantou University\|Medical Colleg	Shantou University	2	0.93918	0.93804	0.11318	0.11256	0.66754	0.67006	0.4771	0.47662	150	150	B	B	biological fallback assumption	illumina	miseq	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-04-27	Pharyngula	Embryo	Whole Organism	All anatomical structures
64175	64175	SRR14308464	SRX10663872	SRS8758292	SRP315996	PRJNA724011	BDE 47 zebrafish 24hpf 4dpf	PRJNA724011	Other					BB3		strain:AB18\|age:24hpf18\|dev stage:24hpf18\|sex:pooled male and female\|tissue:wholefish\|BioSampleModel:Model organism or animal	AB18	L18	L18	paried end seq			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina MiSeq		SRP315996			BB3.raw_1.fastq.gz BB3.raw_2.fastq.gz	fastq fastq	7062474600.0	23541582.0	BB3.raw 1.fastq.gz	0:150 1:150	A:1921863301;C:1592284161;G:1655846305;T:1892221736;N:259097	150	150	1921863301	1592284161	1655846305	1892221736	259097	SRX10663872	SRS8758292	SRA1222808	Shantou University\|Medical Colleg	Shantou University	2	0.93889	0.93837	0.11056	0.10986	0.66614	0.66933	0.47318	0.47131	150	150	B	B	biological fallback assumption	illumina	miseq	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-04-27	Pharyngula	Embryo	Whole Organism	All anatomical structures
64176	64176	SRR14308465	SRX10663871	SRS8758291	SRP315996	PRJNA724011	BDE 47 zebrafish 24hpf 4dpf	PRJNA724011	Other					BB2		strain:AB17\|age:24hpf17\|dev stage:24hpf17\|sex:pooled male and female\|tissue:wholefish\|BioSampleModel:Model organism or animal	AB17	L17	L17	paried end seq			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina MiSeq		SRP315996			BB2.raw_1.fastq.gz BB2.raw_2.fastq.gz	fastq fastq	8811666300.0	29372221.0	BB2.raw 1.fastq.gz	0:150 1:150	A:2397552932;C:1984902811;G:2068491247;T:2360394673;N:324637	150	150	2397552932	1984902811	2068491247	2360394673	324637	SRX10663871	SRS8758291	SRA1222808	Shantou University\|Medical Colleg	Shantou University	2	0.94173	0.9408	0.11119	0.11014	0.66862	0.67361	0.47037	0.47102	150	150	B	B	biological fallback assumption	illumina	miseq	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-04-27	Pharyngula	Embryo	Whole Organism	All anatomical structures
64177	64177	SRR14308466	SRX10663870	SRS8758290	SRP315996	PRJNA724011	BDE 47 zebrafish 24hpf 4dpf	PRJNA724011	Other					BB1		strain:AB16\|age:24hpf16\|dev stage:24hpf16\|sex:pooled male and female\|tissue:wholefish\|BioSampleModel:Model organism or animal	AB16	L16	L16	paried end seq			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina MiSeq		SRP315996			BB1.raw_1.fastq.gz BB1.raw_2.fastq.gz	fastq fastq	7443202800.0	24810676.0	BB1.raw 1.fastq.gz	0:150 1:150	A:2006371139;C:1694257851;G:1793398929;T:1948895527;N:279354	150	150	2006371139	1694257851	1793398929	1948895527	279354	SRX10663870	SRS8758290	SRA1222808	Shantou University\|Medical Colleg	Shantou University	2	0.94595	0.94447	0.09854	0.09761	0.66947	0.67308	0.47022	0.46692	150	150	B	B	biological fallback assumption	illumina	miseq	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-04-27	Pharyngula	Embryo	Whole Organism	All anatomical structures
64178	64178	SRR14308467	SRX10663869	SRS8758289	SRP315996	PRJNA724011	BDE 47 zebrafish 24hpf 4dpf	PRJNA724011	Other					AA3		strain:AB15\|age:24hpf15\|dev stage:24hpf15\|sex:pooled male and female\|tissue:wholefish\|BioSampleModel:Model organism or animal	AB15	L15	L15	paried end seq			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina MiSeq		SRP315996			AA3.raw_2.fastq.gz AA3.raw_1.fastq.gz	fastq fastq	9615009600.0	32050032.0	AA3.raw 1.fastq.gz	0:150 1:150	A:2582591269;C:2196606474;G:2311586967;T:2523869435;N:355455	150	150	2582591269	2196606474	2311586967	2523869435	355455	SRX10663869	SRS8758289	SRA1222808	Shantou University\|Medical Colleg	Shantou University	2	0.94626	0.94544	0.10279	0.10177	0.6607	0.66409	0.47416	0.46877	150	150	B	B	biological fallback assumption	illumina	miseq	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-04-26	Pharyngula	Embryo	Whole Organism	All anatomical structures
64179	64179	SRR14308468	SRX10663868	SRS8758288	SRP315996	PRJNA724011	BDE 47 zebrafish 24hpf 4dpf	PRJNA724011	Other					AA2		strain:AB14\|age:24hpf14\|dev stage:24hpf14\|sex:pooled male and female\|tissue:wholefish\|BioSampleModel:Model organism or animal	AB14	L14	L14	paried end seq			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina MiSeq		SRP315996			AA2.raw_1.fastq.gz AA2.raw_2.fastq.gz	fastq fastq	9362109300.0	31207031.0	AA2.raw 1.fastq.gz	0:150 1:150	A:2520201597;C:2134760126;G:2243935064;T:2462866543;N:345970	150	150	2520201597	2134760126	2243935064	2462866543	345970	SRX10663868	SRS8758288	SRA1222808	Shantou University\|Medical Colleg	Shantou University	2	0.94556	0.94456	0.10681	0.10604	0.66235	0.6647	0.4763	0.47399	150	150	B	B	biological fallback assumption	illumina	miseq	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-04-26	Pharyngula	Embryo	Whole Organism	All anatomical structures
64180	64180	SRR14308469	SRX10663867	SRS8758287	SRP315996	PRJNA724011	BDE 47 zebrafish 24hpf 4dpf	PRJNA724011	Other					AA1		strain:AB13\|age:24hpf13\|dev stage:24hpf13\|sex:pooled male and female\|tissue:wholefish\|BioSampleModel:Model organism or animal	AB13	L13	L13	paried end seq			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina MiSeq		SRP315996			AA1.raw_1.fastq.gz AA1.raw_2.fastq.gz	fastq fastq	7908833100.0	26362777.0	AA1.raw 1.fastq.gz	0:150 1:150	A:2160066191;C:1780834262;G:1851117381;T:2116551054;N:264212	150	150	2160066191	1780834262	1851117381	2116551054	264212	SRX10663867	SRS8758287	SRA1222808	Shantou University\|Medical Colleg	Shantou University	2	0.9396	0.93706	0.12075	0.11997	0.6619	0.66429	0.46569	0.46809	150	150	B	B	biological fallback assumption	illumina	miseq	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-04-27	Pharyngula	Embryo	Whole Organism	All anatomical structures
64181	64181	SRR14308470	SRX10663866	SRS8758286	SRP315996	PRJNA724011	BDE 47 zebrafish 24hpf 4dpf	PRJNA724011	Other					D3		strain:AB12\|age:24hpf12\|dev stage:24hpf12\|sex:pooled male and female\|tissue:wholefish\|BioSampleModel:Model organism or animal	AB12	L12	L12	paried end seq			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina MiSeq		SRP315996			D3.raw_1.fastq.gz D3.raw_2.fastq.gz	fastq fastq	6923319900.0	23077733.0	D3.raw 1.fastq.gz	0:150 1:150	A:1863150654;C:1581723494;G:1644468748;T:1833723008;N:253996	150	150	1863150654	1581723494	1644468748	1833723008	253996	SRX10663866	SRS8758286	SRA1222808	Shantou University\|Medical Colleg	Shantou University	2	0.94206	0.94012	0.09084	0.08963	0.69158	0.69587	0.46957	0.46928	150	150	B	B	biological fallback assumption	illumina	miseq	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-04-27	Pharyngula	Embryo	Whole Organism	All anatomical structures
64182	64182	SRR14308471	SRX10663865	SRS8758285	SRP315996	PRJNA724011	BDE 47 zebrafish 24hpf 4dpf	PRJNA724011	Other					D2		strain:AB11\|age:24hpf11\|dev stage:24hpf11\|sex:pooled male and female\|tissue:wholefish\|BioSampleModel:Model organism or animal	AB11	L11	L11	paried end seq			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina MiSeq		SRP315996			D2.raw_1.fastq.gz D2.raw_2.fastq.gz	fastq fastq	5966531700.0	19888439.0	D2.raw 1.fastq.gz	0:150 1:150	A:1618527031;C:1354948721;G:1407570126;T:1585294636;N:191186	150	150	1618527031	1354948721	1407570126	1585294636	191186	SRX10663865	SRS8758285	SRA1222808	Shantou University\|Medical Colleg	Shantou University	2	0.93817	0.93656	0.09919	0.09832	0.69633	0.69873	0.46752	0.46677	150	150	B	B	biological fallback assumption	illumina	miseq	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-04-27	Pharyngula	Embryo	Whole Organism	All anatomical structures
64183	64183	SRR14308472	SRX10663864	SRS8758284	SRP315996	PRJNA724011	BDE 47 zebrafish 24hpf 4dpf	PRJNA724011	Other					A2		strain:AB2\|age:24hpf2\|dev stage:24hpf2\|sex:pooled male and female\|tissue:wholefish\|BioSampleModel:Model organism or animal	AB2	L2	L2	paried end seq			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina MiSeq		SRP315996			A2.raw_1.fastq.gz A2.raw_2.fastq.gz	fastq fastq	6898409700.0	22994699.0	A2.raw 1.fastq.gz	0:150 1:150	A:1853201809;C:1578196914;G:1644192208;T:1822563946;N:254823	150	150	1853201809	1578196914	1644192208	1822563946	254823	SRX10663864	SRS8758284	SRA1222808	Shantou University\|Medical Colleg	Shantou University	2	0.92689	0.92559	0.09274	0.092	0.69449	0.698	0.47398	0.47458	150	150	B	B	biological fallback assumption	illumina	miseq	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-04-27	Pharyngula	Embryo	Whole Organism	All anatomical structures
64184	64184	SRR14308473	SRX10663863	SRS8758283	SRP315996	PRJNA724011	BDE 47 zebrafish 24hpf 4dpf	PRJNA724011	Other					A1		strain:AB1\|age:24hpf1\|dev stage:24hpf1\|sex:pooled male and female\|tissue:wholefish\|BioSampleModel:Model organism or animal	AB1	L1	L1	paried end seq			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina MiSeq		SRP315996			A1.raw_1.fastq.gz A1.raw_2.fastq.gz	fastq fastq	6969096000.0	23230320.0	A1.raw 1.fastq.gz	0:150 1:150	A:1873420822;C:1595222195;G:1663575945;T:1836625430;N:251608	150	150	1873420822	1595222195	1663575945	1836625430	251608	SRX10663863	SRS8758283	SRA1222808	Shantou University\|Medical Colleg	Shantou University	2	0.92862	0.92691	0.09367	0.09313	0.69203	0.69603	0.47678	0.47455	150	150	B	B	biological fallback assumption	illumina	miseq	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-04-27	Pharyngula	Embryo	Whole Organism	All anatomical structures
64197	64197	SRR14319883	SRX10675035	SRS8769036	SRP316198	PRJNA724884	Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and terfa compromised zebrafish embryos	PRJNA724884	Other	The goals of this study are to compare NGS in 3dpf zebrafish embryo post knockout terfa telomere repeats binding factor 2. In order to investigate the role of terfa in DDR telomere protection and neuro development.				yyl homo zf rep2		replicate:2\|date:2/20/2021/3pm\|breed:AB\|age:10 day\|dev stage:embryo\|sex:not determined\|tissue:embryo\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: 3d embryos	LDA9530	LDA9530	RNA libraries were prepared for sequencing using standard Illumina protocols			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	HiSeq X Ten		SRP316198			TRF2_homozygous_3d_2_LDA9530Aligned.sortedByCoord.out.bam	bam	13532124350.0	45108312.0	TRF2 homozygous 3d 2 LDA9530Aligned.sortedByCoord.out.bam	0:150.00 1:150.00	A:3411777260;C:3360449196;G:3332955645;T:3425874531;N:1067718	150	150	3411777260	3360449196	3332955645	3425874531	1067718	SRX10675035	SRS8769036	SRA1223267	Ruijin hospital, Shanghai, China\|Emergency Medchine	Ruijin hospital, Shanghai, China	2	0.96358	0.96219	0.06413	0.06452	0.67101	0.67304	0.45519	0.45225	150	150	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-04-24	Larval	Larval	Embryo Imprecise	All anatomical structures
64198	64198	SRR14319884	SRX10675034	SRS8769035	SRP316198	PRJNA724884	Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and terfa compromised zebrafish embryos	PRJNA724884	Other	The goals of this study are to compare NGS in 3dpf zebrafish embryo post knockout terfa telomere repeats binding factor 2. In order to investigate the role of terfa in DDR telomere protection and neuro development.				yyl homo zf rep1		replicate:1\|date:2/20/2021/2pm\|breed:AB\|age:9 day\|dev stage:embryo\|sex:not determined\|tissue:embryo\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: 3d embryos	LDA9528	LDA9528	RNA libraries were prepared for sequencing using standard Illumina protocols			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	HiSeq X Ten		SRP316198		assembly:GRCz11	TRF2_homozygous_3d_1_LDA9528Aligned.sortedByCoord.out.bam	bam	14927377118.0	51943892.0	TRF2 homozygous 3d 1 LDA9528Aligned.sortedByCoord.out.bam	0:143.69 1:143.69	A:3703977593;C:3766420543;G:3739925195;T:3715825628;N:1228159	143	143	3703977593	3766420543	3739925195	3715825628	1228159	SRX10675034	SRS8769035	SRA1223267	Ruijin hospital, Shanghai, China\|Emergency Medchine	Ruijin hospital, Shanghai, China	2	0.96471	0.96437	0.0498	0.05004	0.66906	0.67036	0.45421	0.45111	98	98	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-05-17	Larval	Larval	Embryo Imprecise	All anatomical structures
64199	64199	SRR14319885	SRX10675033	SRS8769034	SRP316198	PRJNA724884	Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and terfa compromised zebrafish embryos	PRJNA724884	Other	The goals of this study are to compare NGS in 3dpf zebrafish embryo post knockout terfa telomere repeats binding factor 2. In order to investigate the role of terfa in DDR telomere protection and neuro development.				yyl hybrid zf rep3		replicate:3\|date:2/15/2021/12am\|breed:AB\|age:8 day\|dev stage:embryo\|sex:not determined\|tissue:embryo\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: 3d embryos	LDA9527	LDA9527	RNA libraries were prepared for sequencing using standard Illumina protocols			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	HiSeq X Ten		SRP316198			TRF2_hybrid_3d_3_LDA9527Aligned.sortedByCoord.out.bam	bam	12450675900.0	41503258.0	TRF2 hybrid 3d 3 LDA9527Aligned.sortedByCoord.out.bam	0:150.00 1:150.00	A:3154217597;C:3079057917;G:3050871836;T:3166472619;N:55931	150	150	3154217597	3079057917	3050871836	3166472619	55931	SRX10675033	SRS8769034	SRA1223267	Ruijin hospital, Shanghai, China\|Emergency Medchine	Ruijin hospital, Shanghai, China	2	0.97361	0.97378	0.0695	0.06953	0.65884	0.65922	0.44942	0.45124	150	150	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-04-24	Larval	Larval	Embryo Imprecise	All anatomical structures
64200	64200	SRR14319886	SRX10675032	SRS8769033	SRP316198	PRJNA724884	Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and terfa compromised zebrafish embryos	PRJNA724884	Other	The goals of this study are to compare NGS in 3dpf zebrafish embryo post knockout terfa telomere repeats binding factor 2. In order to investigate the role of terfa in DDR telomere protection and neuro development.				yyl hybrid zf rep2		replicate:2\|date:2/15/2021/11am\|breed:AB\|age:7 day\|dev stage:embryo\|sex:not determined\|tissue:embryo\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: 3d embryos	LDA9526	LDA9526	RNA libraries were prepared for sequencing using standard Illumina protocols			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	HiSeq X Ten		SRP316198			TRF2_hybrid_3d_2_LDA9526Aligned.sortedByCoord.out.bam	bam	13705312262.0	45685613.0	TRF2 hybrid 3d 2 LDA9526Aligned.sortedByCoord.out.bam	0:150.00 1:150.00	A:3456147807;C:3403904273;G:3377881707;T:3466298988;N:1079487	150	150	3456147807	3403904273	3377881707	3466298988	1079487	SRX10675032	SRS8769033	SRA1223267	Ruijin hospital, Shanghai, China\|Emergency Medchine	Ruijin hospital, Shanghai, China	2	0.96349	0.96378	0.06028	0.06096	0.66296	0.66655	0.46411	0.4594	150	150	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-04-24	Larval	Larval	Embryo Imprecise	All anatomical structures
64201	64201	SRR14319887	SRX10675031	SRS8769032	SRP316198	PRJNA724884	Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and terfa compromised zebrafish embryos	PRJNA724884	Other	The goals of this study are to compare NGS in 3dpf zebrafish embryo post knockout terfa telomere repeats binding factor 2. In order to investigate the role of terfa in DDR telomere protection and neuro development.				yyl hybrid zf rep1		replicate:1\|date:2/15/2021/10am\|breed:AB\|age:6 day\|dev stage:embryo\|sex:not determined\|tissue:embryo\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: 3d embryos	LDA9525	LDA9525	RNA libraries were prepared for sequencing using standard Illumina protocols			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	HiSeq X Ten		SRP316198			TRF2_hybrid_3d_1_LDA9525Aligned.sortedByCoord.out.bam	bam	14038287516.0	46795622.0	TRF2 hybrid 3d 1 LDA9525Aligned.sortedByCoord.out.bam	0:150.00 1:150.00	A:3551265371;C:3474535373;G:3450978358;T:3560404727;N:1103687	150	150	3551265371	3474535373	3450978358	3560404727	1103687	SRX10675031	SRS8769032	SRA1223267	Ruijin hospital, Shanghai, China\|Emergency Medchine	Ruijin hospital, Shanghai, China	2	0.96271	0.96308	0.06105	0.06177	0.66403	0.6672	0.45387	0.4559	150	150	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-04-24	Larval	Larval	Embryo Imprecise	All anatomical structures
64202	64202	SRR14319888	SRX10675030	SRS8769031	SRP316198	PRJNA724884	Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and terfa compromised zebrafish embryos	PRJNA724884	Other	The goals of this study are to compare NGS in 3dpf zebrafish embryo post knockout terfa telomere repeats binding factor 2. In order to investigate the role of terfa in DDR telomere protection and neuro development.				yyl wt zf rep3		replicate:3\|date:2/14/2021/11am\|breed:AB\|age:5 day\|dev stage:embryo\|sex:not determined\|tissue:embryo\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: 3d embryos	LDA9524	LDA9524	RNA libraries were prepared for sequencing using standard Illumina protocols			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	HiSeq X Ten		SRP316198		assembly:GRCz11	WT_3d_3_LDA9524Aligned.sortedByCoord.out.bam	bam	14859562542.0	49533110.0	WT 3d 3 LDA9524Aligned.sortedByCoord.out.bam	0:150.00 1:150.00	A:3726520603;C:3710201397;G:3682621106;T:3739080755;N:1138681	150	150	3726520603	3710201397	3682621106	3739080755	1138681	SRX10675030	SRS8769031	SRA1223267	Ruijin hospital, Shanghai, China\|Emergency Medchine	Ruijin hospital, Shanghai, China	2	0.96602	0.96434	0.05466	0.05515	0.66659	0.66983	0.45294	0.44988	150	150	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-05-17	Larval	Larval	Embryo Imprecise	All anatomical structures
64203	64203	SRR14319889	SRX10675029	SRS8769030	SRP316198	PRJNA724884	Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and terfa compromised zebrafish embryos	PRJNA724884	Other	The goals of this study are to compare NGS in 3dpf zebrafish embryo post knockout terfa telomere repeats binding factor 2. In order to investigate the role of terfa in DDR telomere protection and neuro development.				yyl wt zf rep2		replicate:2\|date:2/14/2021/10am\|breed:AB\|age:4 day\|dev stage:embryo\|sex:not determined\|tissue:embryo\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: 3d embryos	LDA9523	LDA9523	RNA libraries were prepared for sequencing using standard Illumina protocols			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	HiSeq X Ten		SRP316198			WT_3d_2_LDA9523Aligned.sortedByCoord.out.bam	bam	14514400332.0	48381654.0	WT 3d 2 LDA9523Aligned.sortedByCoord.out.bam	0:150.00 1:150.00	A:3705089802;C:3553212549;G:3520322215;T:3734808448;N:967318	150	150	3705089802	3553212549	3520322215	3734808448	967318	SRX10675029	SRS8769030	SRA1223267	Ruijin hospital, Shanghai, China\|Emergency Medchine	Ruijin hospital, Shanghai, China	2	0.96308	0.96421	0.07369	0.0744	0.6552	0.65888	0.46075	0.45705	150	150	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-04-24	Larval	Larval	Embryo Imprecise	All anatomical structures
64204	64204	SRR14319890	SRX10675028	SRS8769029	SRP316198	PRJNA724884	Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and terfa compromised zebrafish embryos	PRJNA724884	Other	The goals of this study are to compare NGS in 3dpf zebrafish embryo post knockout terfa telomere repeats binding factor 2. In order to investigate the role of terfa in DDR telomere protection and neuro development.				yyl wt zf rep1		replicate:1\|date:2/14/2021/9am\|breed:AB\|age:3 day\|dev stage:embryo\|sex:not determined\|tissue:embryo\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: 3d embryos	LDA9522	LDA9522	RNA libraries were prepared for sequencing using standard Illumina protocols			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	HiSeq X Ten		SRP316198			WT_3d_1_LDA9522Aligned.sortedByCoord.out.bam	bam	18010289414.0	60034644.0	WT 3d 1 LDA9522Aligned.sortedByCoord.out.bam	0:150.00 1:150.00	A:4584048700;C:4421083340;G:4382775986;T:4621251990;N:1129398	150	150	4584048700	4421083340	4382775986	4621251990	1129398	SRX10675028	SRS8769029	SRA1223267	Ruijin hospital, Shanghai, China\|Emergency Medchine	Ruijin hospital, Shanghai, China	2	0.96428	0.96501	0.06803	0.06875	0.65458	0.65837	0.46378	0.45821	150	150	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-04-29	Larval	Larval	Embryo Imprecise	All anatomical structures
65871	65871	SRR15684056	SRX11980374	SRS9988552	SRP335145	PRJNA758770	Danio rerio Raw sequence reads	PRJNA758770	Whole Genome Sequencing	A polyfluorinated compound H PFMO2OSA induced transcriptome alters in early zebrafish embryo				PFVE80 1.R2		strain:AB\|age:120h\|sex:N1\|tissue:embyo\|treatment:PFVE 1.2\|BioSampleModel:Model organism or animal	RNA Seq of embryo	SAMN21035685	SAMN21035685	Illumina NovaSeq 6000			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	SINGLE	ILLUMINA	Illumina NovaSeq 6000		SRP335145			PFVE80_1.R2.fastq.gz	fastq	3296094440.0	21828440.0	PFVE80 1.R2.fastq.gz	0:0 1:151	A:915433386;C:730204213;G:755908505;T:894514826;N:33510	0	151	915433386	730204213	755908505	894514826	33510	SRX11980374	SRS9988552	SRA1287281	Chinese Academy of Sciences\|Institute of Zoology	Chinese Academy of Sciences	1	0.93185		0.1143		0.69244		0.47999		151		B		usable mapping rate	illumina	novaseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-09-01	Larval	Larval	Embryo Imprecise	All anatomical structures
65872	65872	SRR15684057	SRX11980373	SRS9988551	SRP335145	PRJNA758770	Danio rerio Raw sequence reads	PRJNA758770	Whole Genome Sequencing	A polyfluorinated compound H PFMO2OSA induced transcriptome alters in early zebrafish embryo				PFVE80 1.R1		strain:AB\|age:120h\|sex:N1\|tissue:embyo\|treatment:PFVE 1.1\|BioSampleModel:Model organism or animal	RNA Seq of embryo	SAMN21035684	SAMN21035684	Illumina NovaSeq 6000			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	SINGLE	ILLUMINA	Illumina NovaSeq 6000		SRP335145			PFVE80_1.R1.fastq.gz	fastq	3296094440.0	21828440.0	PFVE80 1.R1.fastq.gz	0:151 1:0	A:912467078;C:735556764;G:752785505;T:895102572;N:182521	151	0	912467078	735556764	752785505	895102572	182521	SRX11980373	SRS9988551	SRA1287281	Chinese Academy of Sciences\|Institute of Zoology	Chinese Academy of Sciences	1	0.93451		0.11559		0.69063		0.48574		151		B		usable mapping rate	illumina	novaseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-09-01	Larval	Larval	Embryo Imprecise	All anatomical structures
65873	65873	SRR15684058	SRX11980372	SRS9988550	SRP335145	PRJNA758770	Danio rerio Raw sequence reads	PRJNA758770	Whole Genome Sequencing	A polyfluorinated compound H PFMO2OSA induced transcriptome alters in early zebrafish embryo				PFVE0 4.R2		strain:AB\|age:120h\|sex:N1\|tissue:embyo\|treatment:H20 4.2\|BioSampleModel:Model organism or animal	RNA Seq of embryo	SAMN21035683	SAMN21035683	Illumina NovaSeq 6000			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	SINGLE	ILLUMINA	Illumina NovaSeq 6000		SRP335145			PFVE0_4.R2.fastq.gz	fastq	3759908003.0	24900053.0	PFVE0 4.R2.fastq.gz	0:0 1:151	A:1000945494;C:875720109;G:898795328;T:984408950;N:38122	0	151	1000945494	875720109	898795328	984408950	38122	SRX11980372	SRS9988550	SRA1287281	Chinese Academy of Sciences\|Institute of Zoology	Chinese Academy of Sciences	1	0.9408		0.0837		0.67584		0.46787		151		B		usable mapping rate	illumina	novaseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-09-01	Larval	Larval	Embryo Imprecise	All anatomical structures
65874	65874	SRR15684059	SRX11980371	SRS9988549	SRP335145	PRJNA758770	Danio rerio Raw sequence reads	PRJNA758770	Whole Genome Sequencing	A polyfluorinated compound H PFMO2OSA induced transcriptome alters in early zebrafish embryo				PFVE0 4.R1		strain:AB\|age:120h\|sex:N1\|tissue:embyo\|treatment:H20 4.1\|BioSampleModel:Model organism or animal	RNA Seq of embryo	SAMN21035682	SAMN21035682	Illumina NovaSeq 6000			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	SINGLE	ILLUMINA	Illumina NovaSeq 6000		SRP335145			PFVE0_4.R1.fastq.gz	fastq	3759908003.0	24900053.0	PFVE0 4.R1.fastq.gz	0:151 1:0	A:998344987;C:880686863;G:894577099;T:986091832;N:207222	151	0	998344987	880686863	894577099	986091832	207222	SRX11980371	SRS9988549	SRA1287281	Chinese Academy of Sciences\|Institute of Zoology	Chinese Academy of Sciences	1	0.94175		0.08443		0.67334		0.46255		151		B		usable mapping rate	illumina	novaseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-09-01	Larval	Larval	Embryo Imprecise	All anatomical structures
65875	65875	SRR15684060	SRX11980370	SRS9988548	SRP335145	PRJNA758770	Danio rerio Raw sequence reads	PRJNA758770	Whole Genome Sequencing	A polyfluorinated compound H PFMO2OSA induced transcriptome alters in early zebrafish embryo				PFVE0 3.R2		strain:AB\|age:120h\|sex:N1\|tissue:embyo\|treatment:H20 3.2\|BioSampleModel:Model organism or animal	RNA Seq of embryo	SAMN21035681	SAMN21035681	Illumina NovaSeq 6000			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	SINGLE	ILLUMINA	Illumina NovaSeq 6000		SRP335145			PFVE0_3.R2.fastq.gz	fastq	4110903728.0	27224528.0	PFVE0 3.R2.fastq.gz	0:0 1:151	A:1107531796;C:945271780;G:971476953;T:1086581356;N:41843	0	151	1107531796	945271780	971476953	1086581356	41843	SRX11980370	SRS9988548	SRA1287281	Chinese Academy of Sciences\|Institute of Zoology	Chinese Academy of Sciences	1	0.94068		0.08433		0.67243		0.45982		151		B		usable mapping rate	illumina	novaseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-09-01	Larval	Larval	Embryo Imprecise	All anatomical structures
65876	65876	SRR15684061	SRX11980369	SRS9988547	SRP335145	PRJNA758770	Danio rerio Raw sequence reads	PRJNA758770	Whole Genome Sequencing	A polyfluorinated compound H PFMO2OSA induced transcriptome alters in early zebrafish embryo				PFVE0 3.R1		strain:AB\|age:120h\|sex:N1\|tissue:embyo\|treatment:H2O 3.1\|BioSampleModel:Model organism or animal	RNA Seq of embryo	SAMN21035680	SAMN21035680	Illumina NovaSeq 6000			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	SINGLE	ILLUMINA	Illumina NovaSeq 6000		SRP335145			PFVE0_3.R1.fastq.gz	fastq	4110903728.0	27224528.0	PFVE0 3.R1.fastq.gz	0:151 1:0	A:1103234050;C:949977333;G:968068226;T:1089400056;N:224063	151	0	1103234050	949977333	968068226	1089400056	224063	SRX11980369	SRS9988547	SRA1287281	Chinese Academy of Sciences\|Institute of Zoology	Chinese Academy of Sciences	1	0.94257		0.08462		0.66969		0.46513		151		B		usable mapping rate	illumina	novaseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-09-01	Larval	Larval	Embryo Imprecise	All anatomical structures
65877	65877	SRR15684062	SRX11980368	SRS9988546	SRP335145	PRJNA758770	Danio rerio Raw sequence reads	PRJNA758770	Whole Genome Sequencing	A polyfluorinated compound H PFMO2OSA induced transcriptome alters in early zebrafish embryo				PFVE0 2.R2		strain:AB\|age:120h\|sex:N1\|tissue:embyo\|treatment:H20 2.2\|BioSampleModel:Model organism or animal	RNA Seq of embryo	SAMN21035679	SAMN21035679	Illumina NovaSeq 6000			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	SINGLE	ILLUMINA	Illumina NovaSeq 6000		SRP335145			PFVE0_2.R2.fastq.gz	fastq	3303194158.0	21875458.0	PFVE0 2.R2.fastq.gz	0:0 1:151	A:882380354;C:765252922;G:789054306;T:866472679;N:33897	0	151	882380354	765252922	789054306	866472679	33897	SRX11980368	SRS9988546	SRA1287281	Chinese Academy of Sciences\|Institute of Zoology	Chinese Academy of Sciences	1	0.9451		0.07962		0.68034		0.46622		151		B		usable mapping rate	illumina	novaseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-09-01	Larval	Larval	Embryo Imprecise	All anatomical structures
65878	65878	SRR15684063	SRX11980367	SRS9988545	SRP335145	PRJNA758770	Danio rerio Raw sequence reads	PRJNA758770	Whole Genome Sequencing	A polyfluorinated compound H PFMO2OSA induced transcriptome alters in early zebrafish embryo				PFVE0 2.R1		strain:AB\|age:120h\|sex:N1\|tissue:embyo\|treatment:H20 2.1\|BioSampleModel:Model organism or animal	RNA Seq of embryo	SAMN21035678	SAMN21035678	Illumina NovaSeq 6000			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	SINGLE	ILLUMINA	Illumina NovaSeq 6000		SRP335145			PFVE0_2.R1.fastq.gz	fastq	3303194158.0	21875458.0	PFVE0 2.R1.fastq.gz	0:151 1:0	A:880833177;C:770677822;G:784641418;T:866859145;N:182596	151	0	880833177	770677822	784641418	866859145	182596	SRX11980367	SRS9988545	SRA1287281	Chinese Academy of Sciences\|Institute of Zoology	Chinese Academy of Sciences	1	0.94592		0.07933		0.67939		0.46558		151		B		usable mapping rate	illumina	novaseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-09-01	Larval	Larval	Embryo Imprecise	All anatomical structures
65879	65879	SRR15684064	SRX11980366	SRS9988544	SRP335145	PRJNA758770	Danio rerio Raw sequence reads	PRJNA758770	Whole Genome Sequencing	A polyfluorinated compound H PFMO2OSA induced transcriptome alters in early zebrafish embryo				PFVE80 4.R2		strain:AB\|age:120h\|sex:N1\|tissue:embyo\|treatment:PFVE 4.2\|BioSampleModel:Model organism or animal	RNA Seq of embryo	SAMN21035691	SAMN21035691	Illumina NovaSeq 6000			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	SINGLE	ILLUMINA	Illumina NovaSeq 6000		SRP335145			PFVE80_4.R2.fastq.gz	fastq	3525791110.0	23349610.0	PFVE80 4.R2.fastq.gz	0:0 1:151	A:962908653;C:796116922;G:823506287;T:943223019;N:36229	0	151	962908653	796116922	823506287	943223019	36229	SRX11980366	SRS9988544	SRA1287281	Chinese Academy of Sciences\|Institute of Zoology	Chinese Academy of Sciences	1	0.93487		0.10192		0.68193		0.48466		151		B		usable mapping rate	illumina	novaseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-09-01	Larval	Larval	Embryo Imprecise	All anatomical structures
65880	65880	SRR15684065	SRX11980365	SRS9988543	SRP335145	PRJNA758770	Danio rerio Raw sequence reads	PRJNA758770	Whole Genome Sequencing	A polyfluorinated compound H PFMO2OSA induced transcriptome alters in early zebrafish embryo				PFVE80 4.R1		strain:AB\|age:120h\|sex:N1\|tissue:embyo\|treatment:PFVE 4.1\|BioSampleModel:Model organism or animal	RNA Seq of embryo	SAMN21035690	SAMN21035690	Illumina NovaSeq 6000			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	SINGLE	ILLUMINA	Illumina NovaSeq 6000		SRP335145			PFVE80_4.R1.fastq.gz	fastq	3525791110.0	23349610.0	PFVE80 4.R1.fastq.gz	0:151 1:0	A:961509026;C:801265885;G:818953915;T:943866829;N:195455	151	0	961509026	801265885	818953915	943866829	195455	SRX11980365	SRS9988543	SRA1287281	Chinese Academy of Sciences\|Institute of Zoology	Chinese Academy of Sciences	1	0.93687		0.1026		0.67978		0.48493		151		B		usable mapping rate	illumina	novaseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2021-09-01	Larval	Larval	Embryo Imprecise	All anatomical structures

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;