metadata: run_metadata: 16 rows where experiment.library_selection = "RANDOM PCR", experiment.library_source = "TRANSCRIPTOMIC" and experiment.platform = "PACBIO

16 rows where experiment.library_selection = "RANDOM PCR", experiment.library_source = "TRANSCRIPTOMIC" and experiment.platform = "PACBIO_SMRT"

descending

Link	rowid ▼	run.accession	experiment.accession	sample.accession	study.accession	bioproject	study.title	study.alias	study.type	study.abstract	sample.description	sample.title	sample.alias	sample.attributes	experiment.title	experiment.alias	experiment.library_name	experiment.design_description	experiment.library_strategy	experiment.library_source	experiment.library_selection	experiment.library_layout	experiment.platform	experiment.instrument_model	experiment.study_ref	run.filename	run.semantic_name	run.total_bases	run.total_spots	run.alias	run.base_counts	run.Acount	run.Ccount	run.Gcount	run.Tcount	run.experiment	run.pool_member	submission.accession	submission.srasource	submission.bioprojectsource	platform_family	instrument_generation	read_bias	selection_class	prep_kit	sc_or_bulk	tech_class	technology	submission.bioprojectsource.country	earliest_date	devstage_curation	devstage_curation_coarse	tissue_curation	tissue_curation_coarse
50511	50511	SRR8293425	SRX5108028	SRS4117494	SRP172911	PRJNA498365	Raw sequence reads in the unfertilized eggs of zebrafish Danio rerio	PRJNA498365	Other	Raw sequence reads of full length transcriptome sequencing in the unfertilized eggs of zebrafish Danio rerio.	Three female zebrafish were selected and 100 unfertilized eggs from each female were harvested as three samples Z1 1 Z1 2 and Z1 3 respectively; Identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.	Model organism or animal sample from Danio rerio	unfertilized eggs from three female zebrafish were harvested as samples Z1 M	isolate:3 female zebrafish were selected and 100 unfertilized eggs from each female were harvested as 3 samples Z1 1 Z1 2 and Z1 3 respectively; and identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.\|dev stage:unfertilized egg\|sex:female\|tissue:ovary\|BioSampleModel:Model organism or animal	Full length transcriptome sequencing of zebrafish Danio rerio : adult female unfertilized eggs.	2 3K D03 1	2 3K D03 1	RNA sample Z1 M was reverse transcribed into cDNA. Four fragment ranges 0.5 1K 1 2K 2 3K and >3K were prepared according to the PacBio Iso Seq protocol. PacBio RS II sequencing reactions of 16 SMRT single molecule real time cells 3 cells of 0.5 1K 5 cells of 1 2K 5 cells of 2 3K 3 cells of >3K were performed in DNA Sequencing Reagent 4.0 Clontech Mountain View California USA.	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	SINGLE	PACBIO_SMRT	PacBio RS II	SRP172911	m160828_125709_42199_c101055502550000001823247601061763_s1_p0.1.bax.h5 m160828_125709_42199_c101055502550000001823247601061763_s1_p0.2.bax.h5 m160828_125709_42199_c101055502550000001823247601061763_s1_p0.3.bax.h5 m160828_125709_42199_c101055502550000001823247601061763_s1_p0.bas.h5	pacbio_native pacbio_native pacbio_native pacbio_native	3189114337.0	163482.0	2 3K D03 1.tar.gz	A:1019691460;C:775938787;G:628460211;T:736274173;N:0	1019691460	775938787	628460211	736274173	SRX5108028	SRS4117494	SRA820074	Institute of Hydrobiology, Chinese Academy of Sciences\|State Key Laboratory of Freshwater Ecology and Bio	Institute of Hydrobiology, Chinese Academy of Sciences	pacbio	pacbio_early	full_length	random_priming	unknown	bulk	unknown	unknown	China	2018-12-10	Zygote	Embryo	Gonad	Reproductive System
50512	50512	SRR8293426	SRX5108027	SRS4117494	SRP172911	PRJNA498365	Raw sequence reads in the unfertilized eggs of zebrafish Danio rerio	PRJNA498365	Other	Raw sequence reads of full length transcriptome sequencing in the unfertilized eggs of zebrafish Danio rerio.	Three female zebrafish were selected and 100 unfertilized eggs from each female were harvested as three samples Z1 1 Z1 2 and Z1 3 respectively; Identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.	Model organism or animal sample from Danio rerio	unfertilized eggs from three female zebrafish were harvested as samples Z1 M	isolate:3 female zebrafish were selected and 100 unfertilized eggs from each female were harvested as 3 samples Z1 1 Z1 2 and Z1 3 respectively; and identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.\|dev stage:unfertilized egg\|sex:female\|tissue:ovary\|BioSampleModel:Model organism or animal	Full length transcriptome sequencing of zebrafish Danio rerio : adult female unfertilized eggs.	2 3K E03 1	2 3K E03 1	RNA sample Z1 M was reverse transcribed into cDNA. Four fragment ranges 0.5 1K 1 2K 2 3K and >3K were prepared according to the PacBio Iso Seq protocol. PacBio RS II sequencing reactions of 16 SMRT single molecule real time cells 3 cells of 0.5 1K 5 cells of 1 2K 5 cells of 2 3K 3 cells of >3K were performed in DNA Sequencing Reagent 4.0 Clontech Mountain View California USA.	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	SINGLE	PACBIO_SMRT	PacBio RS II	SRP172911	m160828_171546_42199_c101055502550000001823247601061764_s1_p0.1.bax.h5 m160828_171546_42199_c101055502550000001823247601061764_s1_p0.2.bax.h5 m160828_171546_42199_c101055502550000001823247601061764_s1_p0.3.bax.h5 m160828_171546_42199_c101055502550000001823247601061764_s1_p0.bas.h5	pacbio_native pacbio_native pacbio_native pacbio_native	3603145484.0	163482.0	2 3K E03 1.tar.gz	A:1041332538;C:789941375;G:785608794;T:952634306;N:0	1041332538	789941375	785608794	952634306	SRX5108027	SRS4117494	SRA820074	Institute of Hydrobiology, Chinese Academy of Sciences\|State Key Laboratory of Freshwater Ecology and Bio	Institute of Hydrobiology, Chinese Academy of Sciences	pacbio	pacbio_early	full_length	random_priming	unknown	bulk	unknown	unknown	China	2018-12-10	Zygote	Embryo	Gonad	Reproductive System
50513	50513	SRR8293427	SRX5108026	SRS4117494	SRP172911	PRJNA498365	Raw sequence reads in the unfertilized eggs of zebrafish Danio rerio	PRJNA498365	Other	Raw sequence reads of full length transcriptome sequencing in the unfertilized eggs of zebrafish Danio rerio.	Three female zebrafish were selected and 100 unfertilized eggs from each female were harvested as three samples Z1 1 Z1 2 and Z1 3 respectively; Identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.	Model organism or animal sample from Danio rerio	unfertilized eggs from three female zebrafish were harvested as samples Z1 M	isolate:3 female zebrafish were selected and 100 unfertilized eggs from each female were harvested as 3 samples Z1 1 Z1 2 and Z1 3 respectively; and identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.\|dev stage:unfertilized egg\|sex:female\|tissue:ovary\|BioSampleModel:Model organism or animal	Full length transcriptome sequencing of zebrafish Danio rerio : adult female unfertilized eggs.	1 2K D05 1	1 2K D05 1	RNA sample Z1 M was reverse transcribed into cDNA. Four fragment ranges 0.5 1K 1 2K 2 3K and >3K were prepared according to the PacBio Iso Seq protocol. PacBio RS II sequencing reactions of 16 SMRT single molecule real time cells 3 cells of 0.5 1K 5 cells of 1 2K 5 cells of 2 3K 3 cells of >3K were performed in DNA Sequencing Reagent 4.0 Clontech Mountain View California USA.	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	SINGLE	PACBIO_SMRT	PacBio RS II	SRP172911	m160831_064528_42199_c101016682550000001823228410211623_s1_p0.1.bax.h5 m160831_064528_42199_c101016682550000001823228410211623_s1_p0.2.bax.h5 m160831_064528_42199_c101016682550000001823228410211623_s1_p0.3.bax.h5 m160831_064528_42199_c101016682550000001823228410211623_s1_p0.bas.h5	pacbio_native pacbio_native pacbio_native pacbio_native	4494598972.0	163482.0	1 2K D05 1.tar.gz	A:1263523570;C:919488657;G:1005901638;T:1241749988;N:0	1263523570	919488657	1005901638	1241749988	SRX5108026	SRS4117494	SRA820074	Institute of Hydrobiology, Chinese Academy of Sciences\|State Key Laboratory of Freshwater Ecology and Bio	Institute of Hydrobiology, Chinese Academy of Sciences	pacbio	pacbio_early	full_length	random_priming	unknown	bulk	unknown	unknown	China	2018-12-10	Zygote	Embryo	Gonad	Reproductive System
50514	50514	SRR8293428	SRX5108025	SRS4117494	SRP172911	PRJNA498365	Raw sequence reads in the unfertilized eggs of zebrafish Danio rerio	PRJNA498365	Other	Raw sequence reads of full length transcriptome sequencing in the unfertilized eggs of zebrafish Danio rerio.	Three female zebrafish were selected and 100 unfertilized eggs from each female were harvested as three samples Z1 1 Z1 2 and Z1 3 respectively; Identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.	Model organism or animal sample from Danio rerio	unfertilized eggs from three female zebrafish were harvested as samples Z1 M	isolate:3 female zebrafish were selected and 100 unfertilized eggs from each female were harvested as 3 samples Z1 1 Z1 2 and Z1 3 respectively; and identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.\|dev stage:unfertilized egg\|sex:female\|tissue:ovary\|BioSampleModel:Model organism or animal	Full length transcriptome sequencing of zebrafish Danio rerio : adult female unfertilized eggs.	1 2K E05 1	1 2K E05 1	RNA sample Z1 M was reverse transcribed into cDNA. Four fragment ranges 0.5 1K 1 2K 2 3K and >3K were prepared according to the PacBio Iso Seq protocol. PacBio RS II sequencing reactions of 16 SMRT single molecule real time cells 3 cells of 0.5 1K 5 cells of 1 2K 5 cells of 2 3K 3 cells of >3K were performed in DNA Sequencing Reagent 4.0 Clontech Mountain View California USA.	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	SINGLE	PACBIO_SMRT	PacBio RS II	SRP172911	m160831_110725_42199_c101016682550000001823228410211624_s1_p0.1.bax.h5 m160831_110725_42199_c101016682550000001823228410211624_s1_p0.2.bax.h5 m160831_110725_42199_c101016682550000001823228410211624_s1_p0.3.bax.h5 m160831_110725_42199_c101016682550000001823228410211624_s1_p0.bas.h5	pacbio_native pacbio_native pacbio_native pacbio_native	4610281055.0	163482.0	1 2K E05 1.tar.gz	A:1313884618;C:971754386;G:994748647;T:1264950574;N:0	1313884618	971754386	994748647	1264950574	SRX5108025	SRS4117494	SRA820074	Institute of Hydrobiology, Chinese Academy of Sciences\|State Key Laboratory of Freshwater Ecology and Bio	Institute of Hydrobiology, Chinese Academy of Sciences	pacbio	pacbio_early	full_length	random_priming	unknown	bulk	unknown	unknown	China	2018-12-10	Zygote	Embryo	Gonad	Reproductive System
50515	50515	SRR8293429	SRX5108024	SRS4117494	SRP172911	PRJNA498365	Raw sequence reads in the unfertilized eggs of zebrafish Danio rerio	PRJNA498365	Other	Raw sequence reads of full length transcriptome sequencing in the unfertilized eggs of zebrafish Danio rerio.	Three female zebrafish were selected and 100 unfertilized eggs from each female were harvested as three samples Z1 1 Z1 2 and Z1 3 respectively; Identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.	Model organism or animal sample from Danio rerio	unfertilized eggs from three female zebrafish were harvested as samples Z1 M	isolate:3 female zebrafish were selected and 100 unfertilized eggs from each female were harvested as 3 samples Z1 1 Z1 2 and Z1 3 respectively; and identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.\|dev stage:unfertilized egg\|sex:female\|tissue:ovary\|BioSampleModel:Model organism or animal	Full length transcriptome sequencing of zebrafish Danio rerio : adult female unfertilized eggs.	1 2K F03 1	1 2K F03 1	RNA sample Z1 M was reverse transcribed into cDNA. Four fragment ranges 0.5 1K 1 2K 2 3K and >3K were prepared according to the PacBio Iso Seq protocol. PacBio RS II sequencing reactions of 16 SMRT single molecule real time cells 3 cells of 0.5 1K 5 cells of 1 2K 5 cells of 2 3K 3 cells of >3K were performed in DNA Sequencing Reagent 4.0 Clontech Mountain View California USA.	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	SINGLE	PACBIO_SMRT	PacBio RS II	SRP172911	m160828_213458_42199_c101055502550000001823247601061765_s1_p0.1.bax.h5 m160828_213458_42199_c101055502550000001823247601061765_s1_p0.2.bax.h5 m160828_213458_42199_c101055502550000001823247601061765_s1_p0.3.bax.h5 m160828_213458_42199_c101055502550000001823247601061765_s1_p0.bas.h5	pacbio_native pacbio_native pacbio_native pacbio_native	6488051235.0	163482.0	1 2K F03 1.tar.gz	A:1835535517;C:1366315971;G:1464006715;T:1752025312;N:0	1835535517	1366315971	1464006715	1752025312	SRX5108024	SRS4117494	SRA820074	Institute of Hydrobiology, Chinese Academy of Sciences\|State Key Laboratory of Freshwater Ecology and Bio	Institute of Hydrobiology, Chinese Academy of Sciences	pacbio	pacbio_early	full_length	random_priming	unknown	bulk	unknown	unknown	China	2018-12-10	Zygote	Embryo	Gonad	Reproductive System
50516	50516	SRR8293430	SRX5108023	SRS4117494	SRP172911	PRJNA498365	Raw sequence reads in the unfertilized eggs of zebrafish Danio rerio	PRJNA498365	Other	Raw sequence reads of full length transcriptome sequencing in the unfertilized eggs of zebrafish Danio rerio.	Three female zebrafish were selected and 100 unfertilized eggs from each female were harvested as three samples Z1 1 Z1 2 and Z1 3 respectively; Identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.	Model organism or animal sample from Danio rerio	unfertilized eggs from three female zebrafish were harvested as samples Z1 M	isolate:3 female zebrafish were selected and 100 unfertilized eggs from each female were harvested as 3 samples Z1 1 Z1 2 and Z1 3 respectively; and identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.\|dev stage:unfertilized egg\|sex:female\|tissue:ovary\|BioSampleModel:Model organism or animal	Full length transcriptome sequencing of zebrafish Danio rerio : adult female unfertilized eggs.	1 2K G05 1	1 2K G05 1	RNA sample Z1 M was reverse transcribed into cDNA. Four fragment ranges 0.5 1K 1 2K 2 3K and >3K were prepared according to the PacBio Iso Seq protocol. PacBio RS II sequencing reactions of 16 SMRT single molecule real time cells 3 cells of 0.5 1K 5 cells of 1 2K 5 cells of 2 3K 3 cells of >3K were performed in DNA Sequencing Reagent 4.0 Clontech Mountain View California USA.	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	SINGLE	PACBIO_SMRT	PacBio RS II	SRP172911	m160829_020016_42199_c101055502550000001823247601061766_s1_p0.1.bax.h5 m160829_020016_42199_c101055502550000001823247601061766_s1_p0.2.bax.h5 m160829_020016_42199_c101055502550000001823247601061766_s1_p0.3.bax.h5 m160829_020016_42199_c101055502550000001823247601061766_s1_p0.bas.h5	pacbio_native pacbio_native pacbio_native pacbio_native	6326394753.0	163482.0	1 2K G03 1.tar.gz	A:1844148357;C:1410947877;G:1367704673;T:1640545786;N:0	1844148357	1410947877	1367704673	1640545786	SRX5108023	SRS4117494	SRA820074	Institute of Hydrobiology, Chinese Academy of Sciences\|State Key Laboratory of Freshwater Ecology and Bio	Institute of Hydrobiology, Chinese Academy of Sciences	pacbio	pacbio_early	full_length	random_priming	unknown	bulk	unknown	unknown	China	2018-12-10	Zygote	Embryo	Gonad	Reproductive System
50517	50517	SRR8293431	SRX5108022	SRS4117494	SRP172911	PRJNA498365	Raw sequence reads in the unfertilized eggs of zebrafish Danio rerio	PRJNA498365	Other	Raw sequence reads of full length transcriptome sequencing in the unfertilized eggs of zebrafish Danio rerio.	Three female zebrafish were selected and 100 unfertilized eggs from each female were harvested as three samples Z1 1 Z1 2 and Z1 3 respectively; Identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.	Model organism or animal sample from Danio rerio	unfertilized eggs from three female zebrafish were harvested as samples Z1 M	isolate:3 female zebrafish were selected and 100 unfertilized eggs from each female were harvested as 3 samples Z1 1 Z1 2 and Z1 3 respectively; and identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.\|dev stage:unfertilized egg\|sex:female\|tissue:ovary\|BioSampleModel:Model organism or animal	Full length transcriptome sequencing of zebrafish Danio rerio : adult female unfertilized eggs.	0.5 1K E03 1	0.5 1K E03 1	RNA sample Z1 M was reverse transcribed into cDNA. Four fragment ranges 0.5 1K 1 2K 2 3K and >3K were prepared according to the PacBio Iso Seq protocol. PacBio RS II sequencing reactions of 16 SMRT single molecule real time cells 3 cells of 0.5 1K 5 cells of 1 2K 5 cells of 2 3K 3 cells of >3K were performed in DNA Sequencing Reagent 4.0 Clontech Mountain View California USA.	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	SINGLE	PACBIO_SMRT	PacBio RS II	SRP172911	m160921_142928_42199_c100979762550000001823212907061657_s1_X0.bas.h5 m160921_142928_42199_c100979762550000001823212907061657_s1_X0.3.bax.h5 m160921_142928_42199_c100979762550000001823212907061657_s1_X0.2.bax.h5 m160921_142928_42199_c100979762550000001823212907061657_s1_X0.1.bax.h5	pacbio_native pacbio_native pacbio_native pacbio_native	1906153604.0	163482.0	0.5 1K E03 1.tar.gz	A:568523342;C:407560314;G:389613623;T:500427928;N:0	568523342	407560314	389613623	500427928	SRX5108022	SRS4117494	SRA820074	Institute of Hydrobiology, Chinese Academy of Sciences\|State Key Laboratory of Freshwater Ecology and Bio	Institute of Hydrobiology, Chinese Academy of Sciences	pacbio	pacbio_early	full_length	random_priming	unknown	bulk	unknown	unknown	China	2018-12-08	Zygote	Embryo	Gonad	Reproductive System
50518	50518	SRR8293432	SRX5108021	SRS4117494	SRP172911	PRJNA498365	Raw sequence reads in the unfertilized eggs of zebrafish Danio rerio	PRJNA498365	Other	Raw sequence reads of full length transcriptome sequencing in the unfertilized eggs of zebrafish Danio rerio.	Three female zebrafish were selected and 100 unfertilized eggs from each female were harvested as three samples Z1 1 Z1 2 and Z1 3 respectively; Identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.	Model organism or animal sample from Danio rerio	unfertilized eggs from three female zebrafish were harvested as samples Z1 M	isolate:3 female zebrafish were selected and 100 unfertilized eggs from each female were harvested as 3 samples Z1 1 Z1 2 and Z1 3 respectively; and identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.\|dev stage:unfertilized egg\|sex:female\|tissue:ovary\|BioSampleModel:Model organism or animal	Full length transcriptome sequencing of zebrafish Danio rerio : adult female unfertilized eggs.	0.5 1K F03 1	0.5 1K F03 1	RNA sample Z1 M was reverse transcribed into cDNA. Four fragment ranges 0.5 1K 1 2K 2 3K and >3K were prepared according to the PacBio Iso Seq protocol. PacBio RS II sequencing reactions of 16 SMRT single molecule real time cells 3 cells of 0.5 1K 5 cells of 1 2K 5 cells of 2 3K 3 cells of >3K were performed in DNA Sequencing Reagent 4.0 Clontech Mountain View California USA.	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	SINGLE	PACBIO_SMRT	PacBio RS II	SRP172911	m160921_184841_42199_c101055652550000001823238312291647_s1_p0.1.bax.h5 m160921_184841_42199_c101055652550000001823238312291647_s1_p0.2.bax.h5 m160921_184841_42199_c101055652550000001823238312291647_s1_p0.3.bax.h5 m160921_184841_42199_c101055652550000001823238312291647_s1_p0.bas.h5	pacbio_native pacbio_native pacbio_native pacbio_native	4156910909.0	163482.0	0.5 1K F03 1.tar.gz	A:1183616929;C:878682771;G:890537851;T:1136413189;N:0	1183616929	878682771	890537851	1136413189	SRX5108021	SRS4117494	SRA820074	Institute of Hydrobiology, Chinese Academy of Sciences\|State Key Laboratory of Freshwater Ecology and Bio	Institute of Hydrobiology, Chinese Academy of Sciences	pacbio	pacbio_early	full_length	random_priming	unknown	bulk	unknown	unknown	China	2018-12-10	Zygote	Embryo	Gonad	Reproductive System
50519	50519	SRR8293433	SRX5108020	SRS4117494	SRP172911	PRJNA498365	Raw sequence reads in the unfertilized eggs of zebrafish Danio rerio	PRJNA498365	Other	Raw sequence reads of full length transcriptome sequencing in the unfertilized eggs of zebrafish Danio rerio.	Three female zebrafish were selected and 100 unfertilized eggs from each female were harvested as three samples Z1 1 Z1 2 and Z1 3 respectively; Identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.	Model organism or animal sample from Danio rerio	unfertilized eggs from three female zebrafish were harvested as samples Z1 M	isolate:3 female zebrafish were selected and 100 unfertilized eggs from each female were harvested as 3 samples Z1 1 Z1 2 and Z1 3 respectively; and identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.\|dev stage:unfertilized egg\|sex:female\|tissue:ovary\|BioSampleModel:Model organism or animal	Full length transcriptome sequencing of zebrafish Danio rerio : adult female unfertilized eggs.	0.5 1K G03 1	0.5 1K G03 1	RNA sample Z1 M was reverse transcribed into cDNA. Four fragment ranges 0.5 1K 1 2K 2 3K and >3K were prepared according to the PacBio Iso Seq protocol. PacBio RS II sequencing reactions of 16 SMRT single molecule real time cells 3 cells of 0.5 1K 5 cells of 1 2K 5 cells of 2 3K 3 cells of >3K were performed in DNA Sequencing Reagent 4.0 Clontech Mountain View California USA.	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	SINGLE	PACBIO_SMRT	PacBio RS II	SRP172911	m160829_063211_42199_c101055502550000001823247601061767_s1_p0.bas.h5 m160829_063211_42199_c101055502550000001823247601061767_s1_p0.3.bax.h5 m160829_063211_42199_c101055502550000001823247601061767_s1_p0.2.bax.h5 m160829_063211_42199_c101055502550000001823247601061767_s1_p0.1.bax.h5	pacbio_native pacbio_native pacbio_native pacbio_native	5660530911.0	163482.0	0.5 1K H03 1.tar.gz	A:1835439052;C:1406954743;G:1037776936;T:1307349158;N:0	1835439052	1406954743	1037776936	1307349158	SRX5108020	SRS4117494	SRA820074	Institute of Hydrobiology, Chinese Academy of Sciences\|State Key Laboratory of Freshwater Ecology and Bio	Institute of Hydrobiology, Chinese Academy of Sciences	pacbio	pacbio_early	full_length	random_priming	unknown	bulk	unknown	unknown	China	2018-12-08	Zygote	Embryo	Gonad	Reproductive System
50520	50520	SRR8293434	SRX5108019	SRS4117494	SRP172911	PRJNA498365	Raw sequence reads in the unfertilized eggs of zebrafish Danio rerio	PRJNA498365	Other	Raw sequence reads of full length transcriptome sequencing in the unfertilized eggs of zebrafish Danio rerio.	Three female zebrafish were selected and 100 unfertilized eggs from each female were harvested as three samples Z1 1 Z1 2 and Z1 3 respectively; Identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.	Model organism or animal sample from Danio rerio	unfertilized eggs from three female zebrafish were harvested as samples Z1 M	isolate:3 female zebrafish were selected and 100 unfertilized eggs from each female were harvested as 3 samples Z1 1 Z1 2 and Z1 3 respectively; and identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.\|dev stage:unfertilized egg\|sex:female\|tissue:ovary\|BioSampleModel:Model organism or animal	Full length transcriptome sequencing of zebrafish Danio rerio : adult female unfertilized eggs.	1 2K C05 1	1 2K C05 1	RNA sample Z1 M was reverse transcribed into cDNA. Four fragment ranges 0.5 1K 1 2K 2 3K and >3K were prepared according to the PacBio Iso Seq protocol. PacBio RS II sequencing reactions of 16 SMRT single molecule real time cells 3 cells of 0.5 1K 5 cells of 1 2K 5 cells of 2 3K 3 cells of >3K were performed in DNA Sequencing Reagent 4.0 Clontech Mountain View California USA.	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	SINGLE	PACBIO_SMRT	PacBio RS II	SRP172911	m160831_022615_42199_c101016682550000001823228410211622_s1_p0.1.bax.h5 m160831_022615_42199_c101016682550000001823228410211622_s1_p0.2.bax.h5 m160831_022615_42199_c101016682550000001823228410211622_s1_p0.3.bax.h5 m160831_022615_42199_c101016682550000001823228410211622_s1_p0.bas.h5	pacbio_native pacbio_native pacbio_native pacbio_native	3047073997.0	163482.0	1 2K C05 1.tar.gz	A:862003813;C:632482019;G:660595007;T:843966997;N:0	862003813	632482019	660595007	843966997	SRX5108019	SRS4117494	SRA820074	Institute of Hydrobiology, Chinese Academy of Sciences\|State Key Laboratory of Freshwater Ecology and Bio	Institute of Hydrobiology, Chinese Academy of Sciences	pacbio	pacbio_early	full_length	random_priming	unknown	bulk	unknown	unknown	China	2018-12-10	Zygote	Embryo	Gonad	Reproductive System
50521	50521	SRR8293435	SRX5108018	SRS4117494	SRP172911	PRJNA498365	Raw sequence reads in the unfertilized eggs of zebrafish Danio rerio	PRJNA498365	Other	Raw sequence reads of full length transcriptome sequencing in the unfertilized eggs of zebrafish Danio rerio.	Three female zebrafish were selected and 100 unfertilized eggs from each female were harvested as three samples Z1 1 Z1 2 and Z1 3 respectively; Identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.	Model organism or animal sample from Danio rerio	unfertilized eggs from three female zebrafish were harvested as samples Z1 M	isolate:3 female zebrafish were selected and 100 unfertilized eggs from each female were harvested as 3 samples Z1 1 Z1 2 and Z1 3 respectively; and identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.\|dev stage:unfertilized egg\|sex:female\|tissue:ovary\|BioSampleModel:Model organism or animal	Full length transcriptome sequencing of zebrafish Danio rerio : adult female unfertilized eggs.	2 3K F05 1	2 3K F05 1	RNA sample Z1 M was reverse transcribed into cDNA. Four fragment ranges 0.5 1K 1 2K 2 3K and >3K were prepared according to the PacBio Iso Seq protocol. PacBio RS II sequencing reactions of 16 SMRT single molecule real time cells 3 cells of 0.5 1K 5 cells of 1 2K 5 cells of 2 3K 3 cells of >3K were performed in DNA Sequencing Reagent 4.0 Clontech Mountain View California USA.	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	SINGLE	PACBIO_SMRT	PacBio RS II	SRP172911	m160831_152721_42199_c101016682550000001823228410211625_s1_p0.1.bax.h5 m160831_152721_42199_c101016682550000001823228410211625_s1_p0.2.bax.h5 m160831_152721_42199_c101016682550000001823228410211625_s1_p0.3.bax.h5 m160831_152721_42199_c101016682550000001823228410211625_s1_p0.bas.h5	pacbio_native pacbio_native pacbio_native pacbio_native	3504827488.0	163482.0	2 3K F05 1.tar.gz	A:1035191904;C:787763869;G:735456262;T:916015813;N:0	1035191904	787763869	735456262	916015813	SRX5108018	SRS4117494	SRA820074	Institute of Hydrobiology, Chinese Academy of Sciences\|State Key Laboratory of Freshwater Ecology and Bio	Institute of Hydrobiology, Chinese Academy of Sciences	pacbio	pacbio_early	full_length	random_priming	unknown	bulk	unknown	unknown	China	2018-12-10	Zygote	Embryo	Gonad	Reproductive System
50522	50522	SRR8293436	SRX5108017	SRS4117494	SRP172911	PRJNA498365	Raw sequence reads in the unfertilized eggs of zebrafish Danio rerio	PRJNA498365	Other	Raw sequence reads of full length transcriptome sequencing in the unfertilized eggs of zebrafish Danio rerio.	Three female zebrafish were selected and 100 unfertilized eggs from each female were harvested as three samples Z1 1 Z1 2 and Z1 3 respectively; Identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.	Model organism or animal sample from Danio rerio	unfertilized eggs from three female zebrafish were harvested as samples Z1 M	isolate:3 female zebrafish were selected and 100 unfertilized eggs from each female were harvested as 3 samples Z1 1 Z1 2 and Z1 3 respectively; and identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.\|dev stage:unfertilized egg\|sex:female\|tissue:ovary\|BioSampleModel:Model organism or animal	Full length transcriptome sequencing of zebrafish Danio rerio : adult female unfertilized eggs.	2 3K G05 1	2 3K G05 1	RNA sample Z1 M was reverse transcribed into cDNA. Four fragment ranges 0.5 1K 1 2K 2 3K and >3K were prepared according to the PacBio Iso Seq protocol. PacBio RS II sequencing reactions of 16 SMRT single molecule real time cells 3 cells of 0.5 1K 5 cells of 1 2K 5 cells of 2 3K 3 cells of >3K were performed in DNA Sequencing Reagent 4.0 Clontech Mountain View California USA.	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	SINGLE	PACBIO_SMRT	PacBio RS II	SRP172911	m160831_195005_42199_c101016682550000001823228410211626_s1_p0.1.bax.h5 m160831_195005_42199_c101016682550000001823228410211626_s1_p0.2.bax.h5 m160831_195005_42199_c101016682550000001823228410211626_s1_p0.3.bax.h5 m160831_195005_42199_c101016682550000001823228410211626_s1_p0.bas.h5	pacbio_native pacbio_native pacbio_native pacbio_native	3325636539.0	163482.0	2 3K G05 1.tar.gz	A:945624516;C:712334057;G:726829680;T:910995593;N:0	945624516	712334057	726829680	910995593	SRX5108017	SRS4117494	SRA820074	Institute of Hydrobiology, Chinese Academy of Sciences\|State Key Laboratory of Freshwater Ecology and Bio	Institute of Hydrobiology, Chinese Academy of Sciences	pacbio	pacbio_early	full_length	random_priming	unknown	bulk	unknown	unknown	China	2018-12-10	Zygote	Embryo	Gonad	Reproductive System
50523	50523	SRR8293437	SRX5108016	SRS4117494	SRP172911	PRJNA498365	Raw sequence reads in the unfertilized eggs of zebrafish Danio rerio	PRJNA498365	Other	Raw sequence reads of full length transcriptome sequencing in the unfertilized eggs of zebrafish Danio rerio.	Three female zebrafish were selected and 100 unfertilized eggs from each female were harvested as three samples Z1 1 Z1 2 and Z1 3 respectively; Identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.	Model organism or animal sample from Danio rerio	unfertilized eggs from three female zebrafish were harvested as samples Z1 M	isolate:3 female zebrafish were selected and 100 unfertilized eggs from each female were harvested as 3 samples Z1 1 Z1 2 and Z1 3 respectively; and identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.\|dev stage:unfertilized egg\|sex:female\|tissue:ovary\|BioSampleModel:Model organism or animal	Full length transcriptome sequencing of zebrafish Danio rerio : adult female unfertilized eggs.	2 3K H05 1	2 3K H05 1	RNA sample Z1 M was reverse transcribed into cDNA. Four fragment ranges 0.5 1K 1 2K 2 3K and >3K were prepared according to the PacBio Iso Seq protocol. PacBio RS II sequencing reactions of 16 SMRT single molecule real time cells 3 cells of 0.5 1K 5 cells of 1 2K 5 cells of 2 3K 3 cells of >3K were performed in DNA Sequencing Reagent 4.0 Clontech Mountain View California USA.	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	SINGLE	PACBIO_SMRT	PacBio RS II	SRP172911	m160901_000924_42199_c101016682550000001823228410211627_s1_p0.1.bax.h5 m160901_000924_42199_c101016682550000001823228410211627_s1_p0.2.bax.h5 m160901_000924_42199_c101016682550000001823228410211627_s1_p0.3.bax.h5 m160901_000924_42199_c101016682550000001823228410211627_s1_p0.bas.h5	pacbio_native pacbio_native pacbio_native pacbio_native	3219471171.0	163482.0	2 3K H05 1.tar.gz	A:955121582;C:717645710;G:671893655;T:846270302;N:0	955121582	717645710	671893655	846270302	SRX5108016	SRS4117494	SRA820074	Institute of Hydrobiology, Chinese Academy of Sciences\|State Key Laboratory of Freshwater Ecology and Bio	Institute of Hydrobiology, Chinese Academy of Sciences	pacbio	pacbio_early	full_length	random_priming	unknown	bulk	unknown	unknown	China	2018-12-10	Zygote	Embryo	Gonad	Reproductive System
50524	50524	SRR8293438	SRX5108015	SRS4117494	SRP172911	PRJNA498365	Raw sequence reads in the unfertilized eggs of zebrafish Danio rerio	PRJNA498365	Other	Raw sequence reads of full length transcriptome sequencing in the unfertilized eggs of zebrafish Danio rerio.	Three female zebrafish were selected and 100 unfertilized eggs from each female were harvested as three samples Z1 1 Z1 2 and Z1 3 respectively; Identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.	Model organism or animal sample from Danio rerio	unfertilized eggs from three female zebrafish were harvested as samples Z1 M	isolate:3 female zebrafish were selected and 100 unfertilized eggs from each female were harvested as 3 samples Z1 1 Z1 2 and Z1 3 respectively; and identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.\|dev stage:unfertilized egg\|sex:female\|tissue:ovary\|BioSampleModel:Model organism or animal	Full length transcriptome sequencing of zebrafish Danio rerio : adult female unfertilized eggs.	3K plus C03 1	3K plus C03 1	RNA sample Z1 M was reverse transcribed into cDNA. Four fragment ranges 0.5 1K 1 2K 2 3K and >3K were prepared according to the PacBio Iso Seq protocol. PacBio RS II sequencing reactions of 16 SMRT single molecule real time cells 3 cells of 0.5 1K 5 cells of 1 2K 5 cells of 2 3K 3 cells of >3K were performed in DNA Sequencing Reagent 4.0 Clontech Mountain View California USA.	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	SINGLE	PACBIO_SMRT	PacBio RS II	SRP172911	m160828_083719_42199_c101055502550000001823247601061762_s1_p0.1.bax.h5 m160828_083719_42199_c101055502550000001823247601061762_s1_p0.2.bax.h5 m160828_083719_42199_c101055502550000001823247601061762_s1_p0.3.bax.h5 m160828_083719_42199_c101055502550000001823247601061762_s1_p0.bas.h5	pacbio_native pacbio_native pacbio_native pacbio_native	2241335194.0	163482.0	3K plus C03 1.tar.gz	A:714450646;C:554512788;G:442348736;T:513624736;N:0	714450646	554512788	442348736	513624736	SRX5108015	SRS4117494	SRA820074	Institute of Hydrobiology, Chinese Academy of Sciences\|State Key Laboratory of Freshwater Ecology and Bio	Institute of Hydrobiology, Chinese Academy of Sciences	pacbio	pacbio_early	full_length	random_priming	unknown	bulk	unknown	unknown	China	2018-12-10	Zygote	Embryo	Gonad	Reproductive System
50525	50525	SRR8293439	SRX5108014	SRS4117494	SRP172911	PRJNA498365	Raw sequence reads in the unfertilized eggs of zebrafish Danio rerio	PRJNA498365	Other	Raw sequence reads of full length transcriptome sequencing in the unfertilized eggs of zebrafish Danio rerio.	Three female zebrafish were selected and 100 unfertilized eggs from each female were harvested as three samples Z1 1 Z1 2 and Z1 3 respectively; Identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.	Model organism or animal sample from Danio rerio	unfertilized eggs from three female zebrafish were harvested as samples Z1 M	isolate:3 female zebrafish were selected and 100 unfertilized eggs from each female were harvested as 3 samples Z1 1 Z1 2 and Z1 3 respectively; and identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.\|dev stage:unfertilized egg\|sex:female\|tissue:ovary\|BioSampleModel:Model organism or animal	Full length transcriptome sequencing of zebrafish Danio rerio : adult female unfertilized eggs.	3K plus G03 1	3K plus G03 1	RNA sample Z1 M was reverse transcribed into cDNA. Four fragment ranges 0.5 1K 1 2K 2 3K and >3K were prepared according to the PacBio Iso Seq protocol. PacBio RS II sequencing reactions of 16 SMRT single molecule real time cells 3 cells of 0.5 1K 5 cells of 1 2K 5 cells of 2 3K 3 cells of >3K were performed in DNA Sequencing Reagent 4.0 Clontech Mountain View California USA.	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	SINGLE	PACBIO_SMRT	PacBio RS II	SRP172911	m160921_231100_42199_c100829932550000001823181912311557_s1_X0.1.bax.h5 m160921_231100_42199_c100829932550000001823181912311557_s1_X0.2.bax.h5 m160921_231100_42199_c100829932550000001823181912311557_s1_X0.3.bax.h5 m160921_231100_42199_c100829932550000001823181912311557_s1_X0.bas.h5	pacbio_native pacbio_native pacbio_native pacbio_native	1500621674.0	163482.0	3K plus G03 1.tar.gz	A:461686513;C:353289117;G:298838025;T:376337789;N:0	461686513	353289117	298838025	376337789	SRX5108014	SRS4117494	SRA820074	Institute of Hydrobiology, Chinese Academy of Sciences\|State Key Laboratory of Freshwater Ecology and Bio	Institute of Hydrobiology, Chinese Academy of Sciences	pacbio	pacbio_early	full_length	random_priming	unknown	bulk	unknown	unknown	China	2018-12-10	Zygote	Embryo	Gonad	Reproductive System
50526	50526	SRR8293440	SRX5108013	SRS4117494	SRP172911	PRJNA498365	Raw sequence reads in the unfertilized eggs of zebrafish Danio rerio	PRJNA498365	Other	Raw sequence reads of full length transcriptome sequencing in the unfertilized eggs of zebrafish Danio rerio.	Three female zebrafish were selected and 100 unfertilized eggs from each female were harvested as three samples Z1 1 Z1 2 and Z1 3 respectively; Identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.	Model organism or animal sample from Danio rerio	unfertilized eggs from three female zebrafish were harvested as samples Z1 M	isolate:3 female zebrafish were selected and 100 unfertilized eggs from each female were harvested as 3 samples Z1 1 Z1 2 and Z1 3 respectively; and identical quantities of RNA from Z1 1 Z1 2 and Z1 3 were combined into sample Z1 M.\|dev stage:unfertilized egg\|sex:female\|tissue:ovary\|BioSampleModel:Model organism or animal	Full length transcriptome sequencing of zebrafish Danio rerio : adult female unfertilized eggs.	3K plus H03 1	3K plus H03 1	RNA sample Z1 M was reverse transcribed into cDNA. Four fragment ranges 0.5 1K 1 2K 2 3K and >3K were prepared according to the PacBio Iso Seq protocol. PacBio RS II sequencing reactions of 16 SMRT single molecule real time cells 3 cells of 0.5 1K 5 cells of 1 2K 5 cells of 2 3K 3 cells of >3K were performed in DNA Sequencing Reagent 4.0 Clontech Mountain View California USA.	RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	SINGLE	PACBIO_SMRT	PacBio RS II	SRP172911	m160922_033036_42199_c101055332550000001823238312291650_s1_p0.bas.h5 m160922_033036_42199_c101055332550000001823238312291650_s1_p0.3.bax.h5 m160922_033036_42199_c101055332550000001823238312291650_s1_p0.2.bax.h5 m160922_033036_42199_c101055332550000001823238312291650_s1_p0.1.bax.h5	pacbio_native pacbio_native pacbio_native pacbio_native	2783940881.0	163482.0	3K plus H03 1.tar.gz	A:785688594;C:616582821;G:618500268;T:743803835;N:0	785688594	616582821	618500268	743803835	SRX5108013	SRS4117494	SRA820074	Institute of Hydrobiology, Chinese Academy of Sciences\|State Key Laboratory of Freshwater Ecology and Bio	Institute of Hydrobiology, Chinese Academy of Sciences	pacbio	pacbio_early	full_length	random_priming	unknown	bulk	unknown	unknown	China	2018-12-08	Zygote	Embryo	Gonad	Reproductive System

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;