metadata: run_metadata: 35 rows where experiment.library_selection = "RANDOM" and tissue

35 rows where experiment.library_selection = "RANDOM" and tissue_curation = "Gut"

descending

Link	rowid ▼	run.accession	experiment.accession	sample.accession	study.accession	bioproject	study.title	study.alias	study.type	study.abstract	sample.description	sample.title	sample.alias	sample.attributes	experiment.title	experiment.alias	experiment.library_name	experiment.design_description	experiment.library_construction_protocol	experiment.library_strategy	experiment.library_source	experiment.library_selection	experiment.library_layout	experiment.platform	experiment.instrument_model	experiment.spot_descriptor	experiment.study_ref	run.title	run.filename	run.semantic_name	run.total_bases	run.total_spots	run.alias	run.read_lengths	run.base_counts	run.r1_length	run.r2_length	run.Acount	run.Ccount	run.Gcount	run.Tcount	run.Ncount	run.experiment	run.pool_member	submission.accession	submission.srasource	submission.bioprojectsource	seqdetective.n_mates	seqdetective.mapping_rate.mate1	seqdetective.mapping_rate.mate2	seqdetective.nofeature_rate.mate1	seqdetective.nofeature_rate.mate2	seqdetective.sparsity.mate1	seqdetective.sparsity.mate2	seqdetective.pos_strand_rate.mate1	seqdetective.pos_strand_rate.mate2	seqdetective.readlen.mate1	seqdetective.readlen.mate2	seqdetective.judgement.mate1	seqdetective.judgement.mate2	seqdetective.judgement.reason	platform_family	instrument_generation	read_bias	selection_class	prep_kit	sc_or_bulk	tech_class	technology	submission.bioprojectsource.country	earliest_date	devstage_curation	devstage_curation_coarse	tissue_curation	tissue_curation_coarse
32	32	DRR408242	DRX393848	DRS407006	DRP012035	PRJDB14274	Zebrafish Gut RNA seq.	DRP012035	Transcriptome Analysis	A project to find differential expressed genes between larval and adult zebrafish gut. We dissected guts of wild type AB line and prepared three duplicates for each of larval and adult gut. Libraries for NGS are prepared using illumina TruSeq standard mRNA sample prep kit.	zebrafish wild type AB adult gut replicate 3	zebrafish adult gut replicate 3	SAMD00529462	sample name:zebrafish adult gut replicate 3\|biological replicate:adult 3\|strain:AB	Illumina HiSeq 1500 sequencing of SAMD00529462	DRX393848	AR019 gut 6 adult	1	1	RNA-Seq	TRANSCRIPTOMIC	RANDOM	SINGLE	ILLUMINA	Illumina HiSeq 1500	<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>126</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>	DRP012035	Illumina HiSeq 1500 sequencing of SAMD00529462			3546347364.0	28145614.0	DRR408242	0:126 1:0	A:919466631;C:829424335;G:818581155;T:978810217;N:65026	126	0	919466631	829424335	818581155	978810217	65026	DRX393848	DRS407006	DRA014885	NIBB\|NIBB core research facilities, National Institute for Basic Biology	University of Hyogo												B		usable mapping rate	illumina	hiseq_era	unknown	random_priming	trueseq	bulk	unknown	unknown	Japan	2024-09-20	Adult	Adult	Gut	Digestive System
33	33	DRR408241	DRX393847	DRS407005	DRP012035	PRJDB14274	Zebrafish Gut RNA seq.	DRP012035	Transcriptome Analysis	A project to find differential expressed genes between larval and adult zebrafish gut. We dissected guts of wild type AB line and prepared three duplicates for each of larval and adult gut. Libraries for NGS are prepared using illumina TruSeq standard mRNA sample prep kit.	zebrafish wild type AB adult gut replicate 2	zebrafish adult gut replicate 2	SAMD00529461	sample name:zebrafish adult gut replicate 2\|biological replicate:adult 2\|strain:AB	Illumina HiSeq 1500 sequencing of SAMD00529461	DRX393847	AR006 gut 4 adult	1	1	RNA-Seq	TRANSCRIPTOMIC	RANDOM	SINGLE	ILLUMINA	Illumina HiSeq 1500	<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>126</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>	DRP012035	Illumina HiSeq 1500 sequencing of SAMD00529461			3671973648.0	29142648.0	DRR408241	0:126 1:0	A:942167543;C:859431290;G:852661772;T:1017643011;N:70032	126	0	942167543	859431290	852661772	1017643011	70032	DRX393847	DRS407005	DRA014885	NIBB\|NIBB core research facilities, National Institute for Basic Biology	University of Hyogo												B		usable mapping rate	illumina	hiseq_era	unknown	random_priming	trueseq	bulk	unknown	unknown	Japan	2024-09-20	Adult	Adult	Gut	Digestive System
34	34	DRR408240	DRX393846	DRS407004	DRP012035	PRJDB14274	Zebrafish Gut RNA seq.	DRP012035	Transcriptome Analysis	A project to find differential expressed genes between larval and adult zebrafish gut. We dissected guts of wild type AB line and prepared three duplicates for each of larval and adult gut. Libraries for NGS are prepared using illumina TruSeq standard mRNA sample prep kit.	zebrafish wild type AB adult gut replicate 1	zebrafish adult gut replicate 1	SAMD00529460	sample name:zebrafish adult gut replicate 1\|biological replicate:adult 1\|strain:AB	Illumina HiSeq 1500 sequencing of SAMD00529460	DRX393846	AR004 gut 2 adult	1	1	RNA-Seq	TRANSCRIPTOMIC	RANDOM	SINGLE	ILLUMINA	Illumina HiSeq 1500	<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>126</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>	DRP012035	Illumina HiSeq 1500 sequencing of SAMD00529460			3480523704.0	27623204.0	DRR408240	0:126 1:0	A:898051986;C:827557593;G:816541244;T:938307607;N:65274	126	0	898051986	827557593	816541244	938307607	65274	DRX393846	DRS407004	DRA014885	NIBB\|NIBB core research facilities, National Institute for Basic Biology	University of Hyogo												B		usable mapping rate	illumina	hiseq_era	unknown	random_priming	trueseq	bulk	unknown	unknown	Japan	2024-09-20	Adult	Adult	Gut	Digestive System
35	35	DRR408239	DRX393845	DRS407003	DRP012035	PRJDB14274	Zebrafish Gut RNA seq.	DRP012035	Transcriptome Analysis	A project to find differential expressed genes between larval and adult zebrafish gut. We dissected guts of wild type AB line and prepared three duplicates for each of larval and adult gut. Libraries for NGS are prepared using illumina TruSeq standard mRNA sample prep kit.	zebrafish wild type AB larval gut replicate 3	zebrafish larval gut replicate 3	SAMD00529459	sample name:zebrafish larval gut replicate 3\|biological replicate:larval 3\|strain:AB	Illumina HiSeq 1500 sequencing of SAMD00529459	DRX393845	AR012 gut 5 5 dpf 6 dpf larvae	1	1	RNA-Seq	TRANSCRIPTOMIC	RANDOM	SINGLE	ILLUMINA	Illumina HiSeq 1500	<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>126</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>	DRP012035	Illumina HiSeq 1500 sequencing of SAMD00529459			3463982046.0	27491921.0	DRR408239	0:126 1:0	A:842552557;C:849757648;G:837664725;T:933942026;N:65090	126	0	842552557	849757648	837664725	933942026	65090	DRX393845	DRS407003	DRA014885	NIBB\|NIBB core research facilities, National Institute for Basic Biology	University of Hyogo												B		usable mapping rate	illumina	hiseq_era	unknown	random_priming	trueseq	bulk	unknown	unknown	Japan	2024-09-20	Larval	Larval	Gut	Digestive System
36	36	DRR408238	DRX393844	DRS407002	DRP012035	PRJDB14274	Zebrafish Gut RNA seq.	DRP012035	Transcriptome Analysis	A project to find differential expressed genes between larval and adult zebrafish gut. We dissected guts of wild type AB line and prepared three duplicates for each of larval and adult gut. Libraries for NGS are prepared using illumina TruSeq standard mRNA sample prep kit.	zebrafish wild type AB larval gut replicate 2	zebrafish larval gut replicate 2	SAMD00529458	sample name:zebrafish larval gut replicate 2\|biological replicate:larval 2\|strain:AB	Illumina HiSeq 1500 sequencing of SAMD00529458	DRX393844	AR005 gut 3 5 dpf 6 dpf larvae	1	1	RNA-Seq	TRANSCRIPTOMIC	RANDOM	SINGLE	ILLUMINA	Illumina HiSeq 1500	<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>126</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>	DRP012035	Illumina HiSeq 1500 sequencing of SAMD00529458			3782320416.0	30018416.0	DRR408238	0:126 1:0	A:930337206;C:920645770;G:906559955;T:1024704277;N:73208	126	0	930337206	920645770	906559955	1024704277	73208	DRX393844	DRS407002	DRA014885	NIBB\|NIBB core research facilities, National Institute for Basic Biology	University of Hyogo												B		usable mapping rate	illumina	hiseq_era	unknown	random_priming	trueseq	bulk	unknown	unknown	Japan	2024-09-20	Larval	Larval	Gut	Digestive System
37	37	DRR408237	DRX393843	DRS407001	DRP012035	PRJDB14274	Zebrafish Gut RNA seq.	DRP012035	Transcriptome Analysis	A project to find differential expressed genes between larval and adult zebrafish gut. We dissected guts of wild type AB line and prepared three duplicates for each of larval and adult gut. Libraries for NGS are prepared using illumina TruSeq standard mRNA sample prep kit.	zebrafish wild type AB larval gut replicate 1	zebrafish larval gut replicate 1	SAMD00529457	sample name:zebrafish larval gut replicate 1\|biological replicate:larval 1\|strain:AB	Illumina HiSeq 1500 sequencing of SAMD00529457	DRX393843	AR002 gut 1 5 dpf 6 dpf larvae	1	1	RNA-Seq	TRANSCRIPTOMIC	RANDOM	SINGLE	ILLUMINA	Illumina HiSeq 1500	<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>126</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>	DRP012035	Illumina HiSeq 1500 sequencing of SAMD00529457			3606885828.0	28626078.0	DRR408237	0:126 1:0	A:879148446;C:885673723;G:870330963;T:971663212;N:69484	126	0	879148446	885673723	870330963	971663212	69484	DRX393843	DRS407001	DRA014885	NIBB\|NIBB core research facilities, National Institute for Basic Biology	University of Hyogo												B		usable mapping rate	illumina	hiseq_era	unknown	random_priming	trueseq	bulk	unknown	unknown	Japan	2024-09-20	Larval	Larval	Gut	Digestive System
25135	25135	SRR25649156	SRX21375305	SRS18618397	SRP455253	PRJNA1005695	Metagenomic survey of zebrafish from the laboratory and the pet trade	PRJNA1005695	Other	This study involved sequencing of bulk ribo depleted RNA from intestine kidney and spleen tissues of adult zebrafish reared in the laboratory and the pet trade to identify zebrafish associated microbes in different environments. The goal was to identify viruses and other microbes that infect zebrafish to improve colony health monitoring and highlight pathogens that could be used to study infections of relevance to aquaculture and biomedicine.			18689X8	strain:Tubingen\|dev stage:adult\|collection date:2020 11 05\|geo loc name:USA: Salt Lake City UT\|sex:female\|tissue:intestine\|isolation source:lab\|replicate:CNTF1\|BioSampleModel:Model organism or animal	RNA seq of adult Danio rerio from laboratory and pet trade sources	18689X8	18689X8	Fish were sacrificed and intestines whole kidney marrows and spleens were harvested for processing. All tissues were homogenized using mechanical lysis. RNA was extracted using the directzol kit Zymo. 1ml of TRIzol was used per intestine and 0.5ml of TRIzol used for individual spleens and kidneys. Following RNA extraction samples were DNAse treated Zymo. RNA ScreenTape Agilent was used to assess quality of RNA samples. Only samples with RIN scores >8 were used for analysis. RNA libraries were prepared by the High Throughput Genomics Shared Resource at the University of Utah with the Illumina TruSeq Stranded Total RNA Library Prep Ribo Zero Gold and sequenced on a Novaseq with using a 150x150 bp sequencing kit to a depth of 25 million reads per sample		RNA-Seq	METATRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina NovaSeq 6000		SRP455253		18689X8_R1.fastq.gz 18689X8_R2.fastq.gz	fastq fastq	8163984120.0	27033060.0	18689X8 R1.fastq.gz	0:151 1:151	A:1900143724;C:2183735704;G:2147710753;T:1932229591;N:164348	151	151	1900143724	2183735704	2147710753	1932229591	164348	SRX21375305	SRS18618397	SRA1693347	University of Utah\|Quantitative Cell Science	University of Utah	2	0.89288	0.89479	0.20193	0.20116	0.79072	0.79352	0.57246	0.56409	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	trueseq	bulk	bulk	bulk	United States	2023-08-15	Adult	Adult	Gut	Digestive System
25136	25136	SRR25649157	SRX21375304	SRS18618396	SRP455253	PRJNA1005695	Metagenomic survey of zebrafish from the laboratory and the pet trade	PRJNA1005695	Other	This study involved sequencing of bulk ribo depleted RNA from intestine kidney and spleen tissues of adult zebrafish reared in the laboratory and the pet trade to identify zebrafish associated microbes in different environments. The goal was to identify viruses and other microbes that infect zebrafish to improve colony health monitoring and highlight pathogens that could be used to study infections of relevance to aquaculture and biomedicine.			19629X15	strain:unknown\|dev stage:adult\|collection date:2022 03 15\|geo loc name:USA: Salt Lake City UT\|sex:female\|tissue:intestine\|isolation source:pet trade 3\|replicate:T3\|BioSampleModel:Model organism or animal	RNA seq of adult Danio rerio from laboratory and pet trade sources	19629X15	19629X15	Fish were sacrificed and intestines whole kidney marrows and spleens were harvested for processing. All tissues were homogenized using mechanical lysis. RNA was extracted using the directzol kit Zymo. 1ml of TRIzol was used per intestine and 0.5ml of TRIzol used for individual spleens and kidneys. Following RNA extraction samples were DNAse treated Zymo. RNA ScreenTape Agilent was used to assess quality of RNA samples. Only samples with RIN scores >8 were used for analysis. RNA libraries were prepared by the High Throughput Genomics Shared Resource at the University of Utah with the Illumina TruSeq Stranded Total RNA Library Prep Ribo Zero Gold and sequenced on a Novaseq with using a 150x150 bp sequencing kit to a depth of 25 million reads per sample		RNA-Seq	METATRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina NovaSeq 6000		SRP455253		19629X15_R2.fastq.gz 19629X15_R1.fastq.gz	fastq fastq	10277997106.0	34033103.0	19629X15 R1.fastq.gz	0:151 1:151	A:2798108841;C:2341310321;G:2438634645;T:2699729301;N:213998	151	151	2798108841	2341310321	2438634645	2699729301	213998	SRX21375304	SRS18618396	SRA1693347	University of Utah\|Quantitative Cell Science	University of Utah	2	0.90655	0.90714	0.18082	0.18027	0.72803	0.72953	0.45722	0.45335	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	trueseq	bulk	bulk	bulk	United States	2023-08-15	Adult	Adult	Gut	Digestive System
25137	25137	SRR25649158	SRX21375303	SRS18618395	SRP455253	PRJNA1005695	Metagenomic survey of zebrafish from the laboratory and the pet trade	PRJNA1005695	Other	This study involved sequencing of bulk ribo depleted RNA from intestine kidney and spleen tissues of adult zebrafish reared in the laboratory and the pet trade to identify zebrafish associated microbes in different environments. The goal was to identify viruses and other microbes that infect zebrafish to improve colony health monitoring and highlight pathogens that could be used to study infections of relevance to aquaculture and biomedicine.			19629X14	strain:unknown\|dev stage:adult\|collection date:2022 03 15\|geo loc name:USA: Salt Lake City UT\|sex:male\|tissue:intestine\|isolation source:pet trade 3\|replicate:T2\|BioSampleModel:Model organism or animal	RNA seq of adult Danio rerio from laboratory and pet trade sources	19629X14	19629X14	Fish were sacrificed and intestines whole kidney marrows and spleens were harvested for processing. All tissues were homogenized using mechanical lysis. RNA was extracted using the directzol kit Zymo. 1ml of TRIzol was used per intestine and 0.5ml of TRIzol used for individual spleens and kidneys. Following RNA extraction samples were DNAse treated Zymo. RNA ScreenTape Agilent was used to assess quality of RNA samples. Only samples with RIN scores >8 were used for analysis. RNA libraries were prepared by the High Throughput Genomics Shared Resource at the University of Utah with the Illumina TruSeq Stranded Total RNA Library Prep Ribo Zero Gold and sequenced on a Novaseq with using a 150x150 bp sequencing kit to a depth of 25 million reads per sample		RNA-Seq	METATRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina NovaSeq 6000		SRP455253		19629X14_R1.fastq.gz 19629X14_R2.fastq.gz	fastq fastq	10921707086.0	36164593.0	19629X14 R1.fastq.gz	0:151 1:151	A:2969229092;C:2484790148;G:2595052715;T:2872407360;N:227771	151	151	2969229092	2484790148	2595052715	2872407360	227771	SRX21375303	SRS18618395	SRA1693347	University of Utah\|Quantitative Cell Science	University of Utah	2	0.90015	0.90211	0.19548	0.19546	0.72997	0.73131	0.53978	0.54998	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	trueseq	bulk	bulk	bulk	United States	2023-08-15	Adult	Adult	Gut	Digestive System
25138	25138	SRR25649159	SRX21375302	SRS18618394	SRP455253	PRJNA1005695	Metagenomic survey of zebrafish from the laboratory and the pet trade	PRJNA1005695	Other	This study involved sequencing of bulk ribo depleted RNA from intestine kidney and spleen tissues of adult zebrafish reared in the laboratory and the pet trade to identify zebrafish associated microbes in different environments. The goal was to identify viruses and other microbes that infect zebrafish to improve colony health monitoring and highlight pathogens that could be used to study infections of relevance to aquaculture and biomedicine.			19629X13	strain:unknown\|dev stage:adult\|collection date:2022 03 15\|geo loc name:USA: Salt Lake City UT\|sex:female\|tissue:intestine\|isolation source:pet trade 3\|replicate:T1\|BioSampleModel:Model organism or animal	RNA seq of adult Danio rerio from laboratory and pet trade sources	19629X13	19629X13	Fish were sacrificed and intestines whole kidney marrows and spleens were harvested for processing. All tissues were homogenized using mechanical lysis. RNA was extracted using the directzol kit Zymo. 1ml of TRIzol was used per intestine and 0.5ml of TRIzol used for individual spleens and kidneys. Following RNA extraction samples were DNAse treated Zymo. RNA ScreenTape Agilent was used to assess quality of RNA samples. Only samples with RIN scores >8 were used for analysis. RNA libraries were prepared by the High Throughput Genomics Shared Resource at the University of Utah with the Illumina TruSeq Stranded Total RNA Library Prep Ribo Zero Gold and sequenced on a Novaseq with using a 150x150 bp sequencing kit to a depth of 25 million reads per sample		RNA-Seq	METATRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina NovaSeq 6000		SRP455253		19629X13_R1.fastq.gz 19629X13_R2.fastq.gz	fastq fastq	10019262230.0	33176365.0	19629X13 R1.fastq.gz	0:151 1:151	A:2732766602;C:2270429150;G:2391166434;T:2624690350;N:209694	151	151	2732766602	2270429150	2391166434	2624690350	209694	SRX21375302	SRS18618394	SRA1693347	University of Utah\|Quantitative Cell Science	University of Utah	2	0.90381	0.90536	0.18425	0.18388	0.72681	0.72936	0.48627	0.49398	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	trueseq	bulk	bulk	bulk	United States	2023-08-15	Adult	Adult	Gut	Digestive System
25139	25139	SRR25649160	SRX21375301	SRS18618393	SRP455253	PRJNA1005695	Metagenomic survey of zebrafish from the laboratory and the pet trade	PRJNA1005695	Other	This study involved sequencing of bulk ribo depleted RNA from intestine kidney and spleen tissues of adult zebrafish reared in the laboratory and the pet trade to identify zebrafish associated microbes in different environments. The goal was to identify viruses and other microbes that infect zebrafish to improve colony health monitoring and highlight pathogens that could be used to study infections of relevance to aquaculture and biomedicine.			19629X12	strain:unknown\|dev stage:adult\|collection date:2022 03 15\|geo loc name:USA: Salt Lake City UT\|sex:female\|tissue:intestine\|isolation source:pet trade 2\|replicate:E3\|BioSampleModel:Model organism or animal	RNA seq of adult Danio rerio from laboratory and pet trade sources	19629X12	19629X12	Fish were sacrificed and intestines whole kidney marrows and spleens were harvested for processing. All tissues were homogenized using mechanical lysis. RNA was extracted using the directzol kit Zymo. 1ml of TRIzol was used per intestine and 0.5ml of TRIzol used for individual spleens and kidneys. Following RNA extraction samples were DNAse treated Zymo. RNA ScreenTape Agilent was used to assess quality of RNA samples. Only samples with RIN scores >8 were used for analysis. RNA libraries were prepared by the High Throughput Genomics Shared Resource at the University of Utah with the Illumina TruSeq Stranded Total RNA Library Prep Ribo Zero Gold and sequenced on a Novaseq with using a 150x150 bp sequencing kit to a depth of 25 million reads per sample		RNA-Seq	METATRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina NovaSeq 6000		SRP455253		19629X12_R1.fastq.gz 19629X12_R2.fastq.gz	fastq fastq	11078632326.0	36684213.0	19629X12 R1.fastq.gz	0:151 1:151	A:2995473302;C:2550446088;G:2653594689;T:2878887522;N:230725	151	151	2995473302	2550446088	2653594689	2878887522	230725	SRX21375301	SRS18618393	SRA1693347	University of Utah\|Quantitative Cell Science	University of Utah	2	0.91101	0.91121	0.16145	0.16142	0.70274	0.70498	0.47852	0.48788	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	trueseq	bulk	bulk	bulk	United States	2023-08-15	Adult	Adult	Gut	Digestive System
25140	25140	SRR25649161	SRX21375300	SRS18618392	SRP455253	PRJNA1005695	Metagenomic survey of zebrafish from the laboratory and the pet trade	PRJNA1005695	Other	This study involved sequencing of bulk ribo depleted RNA from intestine kidney and spleen tissues of adult zebrafish reared in the laboratory and the pet trade to identify zebrafish associated microbes in different environments. The goal was to identify viruses and other microbes that infect zebrafish to improve colony health monitoring and highlight pathogens that could be used to study infections of relevance to aquaculture and biomedicine.			19629X11	strain:unknown\|dev stage:adult\|collection date:2022 03 15\|geo loc name:USA: Salt Lake City UT\|sex:female\|tissue:intestine\|isolation source:pet trade 2\|replicate:E2\|BioSampleModel:Model organism or animal	RNA seq of adult Danio rerio from laboratory and pet trade sources	19629X11	19629X11	Fish were sacrificed and intestines whole kidney marrows and spleens were harvested for processing. All tissues were homogenized using mechanical lysis. RNA was extracted using the directzol kit Zymo. 1ml of TRIzol was used per intestine and 0.5ml of TRIzol used for individual spleens and kidneys. Following RNA extraction samples were DNAse treated Zymo. RNA ScreenTape Agilent was used to assess quality of RNA samples. Only samples with RIN scores >8 were used for analysis. RNA libraries were prepared by the High Throughput Genomics Shared Resource at the University of Utah with the Illumina TruSeq Stranded Total RNA Library Prep Ribo Zero Gold and sequenced on a Novaseq with using a 150x150 bp sequencing kit to a depth of 25 million reads per sample		RNA-Seq	METATRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina NovaSeq 6000		SRP455253		19629X11_R1.fastq.gz 19629X11_R2.fastq.gz	fastq fastq	10957183630.0	36282065.0	19629X11 R1.fastq.gz	0:151 1:151	A:2987773085;C:2485587980;G:2603747193;T:2879845340;N:230032	151	151	2987773085	2485587980	2603747193	2879845340	230032	SRX21375300	SRS18618392	SRA1693347	University of Utah\|Quantitative Cell Science	University of Utah	2	0.91198	0.91301	0.20992	0.20926	0.73044	0.73316	0.44301	0.43596	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	trueseq	bulk	bulk	bulk	United States	2023-08-15	Adult	Adult	Gut	Digestive System
25141	25141	SRR25649162	SRX21375299	SRS18618390	SRP455253	PRJNA1005695	Metagenomic survey of zebrafish from the laboratory and the pet trade	PRJNA1005695	Other	This study involved sequencing of bulk ribo depleted RNA from intestine kidney and spleen tissues of adult zebrafish reared in the laboratory and the pet trade to identify zebrafish associated microbes in different environments. The goal was to identify viruses and other microbes that infect zebrafish to improve colony health monitoring and highlight pathogens that could be used to study infections of relevance to aquaculture and biomedicine.			19629X10	strain:unknown\|dev stage:adult\|collection date:2022 03 15\|geo loc name:USA: Salt Lake City UT\|sex:female\|tissue:intestine\|isolation source:pet trade 2\|replicate:E1\|BioSampleModel:Model organism or animal	RNA seq of adult Danio rerio from laboratory and pet trade sources	19629X10	19629X10	Fish were sacrificed and intestines whole kidney marrows and spleens were harvested for processing. All tissues were homogenized using mechanical lysis. RNA was extracted using the directzol kit Zymo. 1ml of TRIzol was used per intestine and 0.5ml of TRIzol used for individual spleens and kidneys. Following RNA extraction samples were DNAse treated Zymo. RNA ScreenTape Agilent was used to assess quality of RNA samples. Only samples with RIN scores >8 were used for analysis. RNA libraries were prepared by the High Throughput Genomics Shared Resource at the University of Utah with the Illumina TruSeq Stranded Total RNA Library Prep Ribo Zero Gold and sequenced on a Novaseq with using a 150x150 bp sequencing kit to a depth of 25 million reads per sample		RNA-Seq	METATRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina NovaSeq 6000		SRP455253		19629X10_R1.fastq.gz 19629X10_R2.fastq.gz	fastq fastq	9549065142.0	31619421.0	19629X10 R1.fastq.gz	0:151 1:151	A:2603092155;C:2167963952;G:2264536965;T:2513273275;N:198795	151	151	2603092155	2167963952	2264536965	2513273275	198795	SRX21375299	SRS18618390	SRA1693347	University of Utah\|Quantitative Cell Science	University of Utah	2	0.92549	0.92615	0.16176	0.15925	0.7683	0.76926	0.3093	0.30927	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	trueseq	bulk	bulk	bulk	United States	2023-08-15	Adult	Adult	Gut	Digestive System
25144	25144	SRR25649165	SRX21375296	SRS18618388	SRP455253	PRJNA1005695	Metagenomic survey of zebrafish from the laboratory and the pet trade	PRJNA1005695	Other	This study involved sequencing of bulk ribo depleted RNA from intestine kidney and spleen tissues of adult zebrafish reared in the laboratory and the pet trade to identify zebrafish associated microbes in different environments. The goal was to identify viruses and other microbes that infect zebrafish to improve colony health monitoring and highlight pathogens that could be used to study infections of relevance to aquaculture and biomedicine.			18843X6	strain:Tubingen\|dev stage:adult\|collection date:2020 11 05\|geo loc name:USA: Salt Lake City UT\|sex:male\|tissue:intestine\|isolation source:lab cohoused\|replicate:CHM3\|BioSampleModel:Model organism or animal	RNA seq of adult Danio rerio from laboratory and pet trade sources	18843X6	18843X6	Fish were sacrificed and intestines whole kidney marrows and spleens were harvested for processing. All tissues were homogenized using mechanical lysis. RNA was extracted using the directzol kit Zymo. 1ml of TRIzol was used per intestine and 0.5ml of TRIzol used for individual spleens and kidneys. Following RNA extraction samples were DNAse treated Zymo. RNA ScreenTape Agilent was used to assess quality of RNA samples. Only samples with RIN scores >8 were used for analysis. RNA libraries were prepared by the High Throughput Genomics Shared Resource at the University of Utah with the Illumina TruSeq Stranded Total RNA Library Prep Ribo Zero Gold and sequenced on a Novaseq with using a 150x150 bp sequencing kit to a depth of 25 million reads per sample		RNA-Seq	METATRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina NovaSeq 6000		SRP455253		18843X6_R1.fastq.gz 18843X6_R2.fastq.gz	fastq fastq	8690806510.0	28777505.0	18843X6 R1.fastq.gz	0:151 1:151	A:2346658651;C:2002583855;G:2108507319;T:2232918222;N:138463	151	151	2346658651	2002583855	2108507319	2232918222	138463	SRX21375296	SRS18618388	SRA1693347	University of Utah\|Quantitative Cell Science	University of Utah	2	0.91741	0.91785	0.21796	0.21778	0.6971	0.70102	0.49123	0.51016	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	trueseq	bulk	bulk	bulk	United States	2023-08-15	Adult	Adult	Gut	Digestive System
25147	25147	SRR25649168	SRX21375293	SRS18618385	SRP455253	PRJNA1005695	Metagenomic survey of zebrafish from the laboratory and the pet trade	PRJNA1005695	Other	This study involved sequencing of bulk ribo depleted RNA from intestine kidney and spleen tissues of adult zebrafish reared in the laboratory and the pet trade to identify zebrafish associated microbes in different environments. The goal was to identify viruses and other microbes that infect zebrafish to improve colony health monitoring and highlight pathogens that could be used to study infections of relevance to aquaculture and biomedicine.			18843X3	strain:Tubingen\|dev stage:adult\|collection date:2020 11 05\|geo loc name:USA: Salt Lake City UT\|sex:male\|tissue:intestine\|isolation source:lab cohoused\|replicate:CHM2\|BioSampleModel:Model organism or animal	RNA seq of adult Danio rerio from laboratory and pet trade sources	18843X3	18843X3	Fish were sacrificed and intestines whole kidney marrows and spleens were harvested for processing. All tissues were homogenized using mechanical lysis. RNA was extracted using the directzol kit Zymo. 1ml of TRIzol was used per intestine and 0.5ml of TRIzol used for individual spleens and kidneys. Following RNA extraction samples were DNAse treated Zymo. RNA ScreenTape Agilent was used to assess quality of RNA samples. Only samples with RIN scores >8 were used for analysis. RNA libraries were prepared by the High Throughput Genomics Shared Resource at the University of Utah with the Illumina TruSeq Stranded Total RNA Library Prep Ribo Zero Gold and sequenced on a Novaseq with using a 150x150 bp sequencing kit to a depth of 25 million reads per sample		RNA-Seq	METATRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina NovaSeq 6000		SRP455253		18843X3_R1.fastq.gz 18843X3_R2.fastq.gz	fastq fastq	9351018676.0	30963638.0	18843X3 R1.fastq.gz	0:151 1:151	A:2555870224;C:2133006230;G:2246501165;T:2415491618;N:149439	151	151	2555870224	2133006230	2246501165	2415491618	149439	SRX21375293	SRS18618385	SRA1693347	University of Utah\|Quantitative Cell Science	University of Utah	2	0.91594	0.91512	0.21678	0.21621	0.72719	0.73117	0.52961	0.53327	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	trueseq	bulk	bulk	bulk	United States	2023-08-15	Adult	Adult	Gut	Digestive System
25149	25149	SRR25649170	SRX21375291	SRS18618383	SRP455253	PRJNA1005695	Metagenomic survey of zebrafish from the laboratory and the pet trade	PRJNA1005695	Other	This study involved sequencing of bulk ribo depleted RNA from intestine kidney and spleen tissues of adult zebrafish reared in the laboratory and the pet trade to identify zebrafish associated microbes in different environments. The goal was to identify viruses and other microbes that infect zebrafish to improve colony health monitoring and highlight pathogens that could be used to study infections of relevance to aquaculture and biomedicine.			19629X9	strain:unknown\|dev stage:adult\|collection date:2022 03 15\|geo loc name:USA: Salt Lake City UT\|sex:male\|tissue:intestine\|isolation source:pet trade 1\|replicate:P3\|BioSampleModel:Model organism or animal	RNA seq of adult Danio rerio from laboratory and pet trade sources	19629X9	19629X9	Fish were sacrificed and intestines whole kidney marrows and spleens were harvested for processing. All tissues were homogenized using mechanical lysis. RNA was extracted using the directzol kit Zymo. 1ml of TRIzol was used per intestine and 0.5ml of TRIzol used for individual spleens and kidneys. Following RNA extraction samples were DNAse treated Zymo. RNA ScreenTape Agilent was used to assess quality of RNA samples. Only samples with RIN scores >8 were used for analysis. RNA libraries were prepared by the High Throughput Genomics Shared Resource at the University of Utah with the Illumina TruSeq Stranded Total RNA Library Prep Ribo Zero Gold and sequenced on a Novaseq with using a 150x150 bp sequencing kit to a depth of 25 million reads per sample		RNA-Seq	METATRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina NovaSeq 6000		SRP455253		19629X9_R1.fastq.gz 19629X9_R2.fastq.gz	fastq fastq	12342730940.0	40869970.0	19629X9 R1.fastq.gz	0:151 1:151	A:3339874828;C:2828928610;G:2945452577;T:3228218292;N:256633	151	151	3339874828	2828928610	2945452577	3228218292	256633	SRX21375291	SRS18618383	SRA1693347	University of Utah\|Quantitative Cell Science	University of Utah	2	0.90738	0.8127	0.19825	0.17409	0.73385	0.74659	0.54306	0.55304	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	trueseq	bulk	bulk	bulk	United States	2023-08-15	Adult	Adult	Gut	Digestive System
25151	25151	SRR25649172	SRX21375289	SRS18618381	SRP455253	PRJNA1005695	Metagenomic survey of zebrafish from the laboratory and the pet trade	PRJNA1005695	Other	This study involved sequencing of bulk ribo depleted RNA from intestine kidney and spleen tissues of adult zebrafish reared in the laboratory and the pet trade to identify zebrafish associated microbes in different environments. The goal was to identify viruses and other microbes that infect zebrafish to improve colony health monitoring and highlight pathogens that could be used to study infections of relevance to aquaculture and biomedicine.			18689X5	strain:Tubingen\|dev stage:adult\|collection date:2020 11 05\|geo loc name:USA: Salt Lake City UT\|sex:male\|tissue:intestine\|isolation source:lab cohoused\|replicate:CHM1\|BioSampleModel:Model organism or animal	RNA seq of adult Danio rerio from laboratory and pet trade sources	18689X5	18689X5	Fish were sacrificed and intestines whole kidney marrows and spleens were harvested for processing. All tissues were homogenized using mechanical lysis. RNA was extracted using the directzol kit Zymo. 1ml of TRIzol was used per intestine and 0.5ml of TRIzol used for individual spleens and kidneys. Following RNA extraction samples were DNAse treated Zymo. RNA ScreenTape Agilent was used to assess quality of RNA samples. Only samples with RIN scores >8 were used for analysis. RNA libraries were prepared by the High Throughput Genomics Shared Resource at the University of Utah with the Illumina TruSeq Stranded Total RNA Library Prep Ribo Zero Gold and sequenced on a Novaseq with using a 150x150 bp sequencing kit to a depth of 25 million reads per sample		RNA-Seq	METATRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina NovaSeq 6000		SRP455253		18689X5_R1.fastq.gz 18689X5_R2.fastq.gz	fastq fastq	8136028886.0	26940493.0	18689X5 R1.fastq.gz	0:151 1:151	A:2015403368;C:2051480513;G:2023331135;T:2045661742;N:152128	151	151	2015403368	2051480513	2023331135	2045661742	152128	SRX21375289	SRS18618381	SRA1693347	University of Utah\|Quantitative Cell Science	University of Utah	2	0.88067	0.88216	0.24575	0.2425	0.75018	0.75073	0.59361	0.61451	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	trueseq	bulk	bulk	bulk	United States	2023-08-15	Adult	Adult	Gut	Digestive System
25154	25154	SRR25649175	SRX21375286	SRS18618378	SRP455253	PRJNA1005695	Metagenomic survey of zebrafish from the laboratory and the pet trade	PRJNA1005695	Other	This study involved sequencing of bulk ribo depleted RNA from intestine kidney and spleen tissues of adult zebrafish reared in the laboratory and the pet trade to identify zebrafish associated microbes in different environments. The goal was to identify viruses and other microbes that infect zebrafish to improve colony health monitoring and highlight pathogens that could be used to study infections of relevance to aquaculture and biomedicine.			18843X9	strain:Tubingen\|dev stage:adult\|collection date:2020 11 05\|geo loc name:USA: Salt Lake City UT\|sex:male\|tissue:intestine\|isolation source:lab\|replicate:CNTM3\|BioSampleModel:Model organism or animal	RNA seq of adult Danio rerio from laboratory and pet trade sources	18843X9	18843X9	Fish were sacrificed and intestines whole kidney marrows and spleens were harvested for processing. All tissues were homogenized using mechanical lysis. RNA was extracted using the directzol kit Zymo. 1ml of TRIzol was used per intestine and 0.5ml of TRIzol used for individual spleens and kidneys. Following RNA extraction samples were DNAse treated Zymo. RNA ScreenTape Agilent was used to assess quality of RNA samples. Only samples with RIN scores >8 were used for analysis. RNA libraries were prepared by the High Throughput Genomics Shared Resource at the University of Utah with the Illumina TruSeq Stranded Total RNA Library Prep Ribo Zero Gold and sequenced on a Novaseq with using a 150x150 bp sequencing kit to a depth of 25 million reads per sample		RNA-Seq	METATRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina NovaSeq 6000		SRP455253		18843X9_R1.fastq.gz 18843X9_R2.fastq.gz	fastq fastq	8819654206.0	29204153.0	18843X9 R1.fastq.gz	0:151 1:151	A:2383706177;C:2044504407;G:2140881818;T:2250422256;N:139548	151	151	2383706177	2044504407	2140881818	2250422256	139548	SRX21375286	SRS18618378	SRA1693347	University of Utah\|Quantitative Cell Science	University of Utah	2	0.90385	0.90437	0.21274	0.21235	0.72604	0.73164	0.52888	0.52909	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	trueseq	bulk	bulk	bulk	United States	2023-08-15	Adult	Adult	Gut	Digestive System
25157	25157	SRR25649178	SRX21375283	SRS18618375	SRP455253	PRJNA1005695	Metagenomic survey of zebrafish from the laboratory and the pet trade	PRJNA1005695	Other	This study involved sequencing of bulk ribo depleted RNA from intestine kidney and spleen tissues of adult zebrafish reared in the laboratory and the pet trade to identify zebrafish associated microbes in different environments. The goal was to identify viruses and other microbes that infect zebrafish to improve colony health monitoring and highlight pathogens that could be used to study infections of relevance to aquaculture and biomedicine.			18689X7	strain:Tubingen\|dev stage:adult\|collection date:2020 11 05\|geo loc name:USA: Salt Lake City UT\|sex:male\|tissue:intestine\|isolation source:lab\|replicate:CNTM2\|BioSampleModel:Model organism or animal	RNA seq of adult Danio rerio from laboratory and pet trade sources	18689X7	18689X7	Fish were sacrificed and intestines whole kidney marrows and spleens were harvested for processing. All tissues were homogenized using mechanical lysis. RNA was extracted using the directzol kit Zymo. 1ml of TRIzol was used per intestine and 0.5ml of TRIzol used for individual spleens and kidneys. Following RNA extraction samples were DNAse treated Zymo. RNA ScreenTape Agilent was used to assess quality of RNA samples. Only samples with RIN scores >8 were used for analysis. RNA libraries were prepared by the High Throughput Genomics Shared Resource at the University of Utah with the Illumina TruSeq Stranded Total RNA Library Prep Ribo Zero Gold and sequenced on a Novaseq with using a 150x150 bp sequencing kit to a depth of 25 million reads per sample		RNA-Seq	METATRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina NovaSeq 6000		SRP455253		18689X7_R1.fastq.gz 18689X7_R2.fastq.gz	fastq fastq	8986035368.0	29755084.0	18689X7 R1.fastq.gz	0:151 1:151	A:2169723143;C:2326462981;G:2292317481;T:2197350043;N:181720	151	151	2169723143	2326462981	2292317481	2197350043	181720	SRX21375283	SRS18618375	SRA1693347	University of Utah\|Quantitative Cell Science	University of Utah	2	0.89254	0.89285	0.22562	0.22356	0.74911	0.75089	0.6409	0.65585	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	trueseq	bulk	bulk	bulk	United States	2023-08-15	Adult	Adult	Gut	Digestive System
25160	25160	SRR25649181	SRX21375280	SRS18618372	SRP455253	PRJNA1005695	Metagenomic survey of zebrafish from the laboratory and the pet trade	PRJNA1005695	Other	This study involved sequencing of bulk ribo depleted RNA from intestine kidney and spleen tissues of adult zebrafish reared in the laboratory and the pet trade to identify zebrafish associated microbes in different environments. The goal was to identify viruses and other microbes that infect zebrafish to improve colony health monitoring and highlight pathogens that could be used to study infections of relevance to aquaculture and biomedicine.			19629X8	strain:unknown\|dev stage:adult\|collection date:2022 03 15\|geo loc name:USA: Salt Lake City UT\|sex:male\|tissue:intestine\|isolation source:pet trade 1\|replicate:P2\|BioSampleModel:Model organism or animal	RNA seq of adult Danio rerio from laboratory and pet trade sources	19629X8	19629X8	Fish were sacrificed and intestines whole kidney marrows and spleens were harvested for processing. All tissues were homogenized using mechanical lysis. RNA was extracted using the directzol kit Zymo. 1ml of TRIzol was used per intestine and 0.5ml of TRIzol used for individual spleens and kidneys. Following RNA extraction samples were DNAse treated Zymo. RNA ScreenTape Agilent was used to assess quality of RNA samples. Only samples with RIN scores >8 were used for analysis. RNA libraries were prepared by the High Throughput Genomics Shared Resource at the University of Utah with the Illumina TruSeq Stranded Total RNA Library Prep Ribo Zero Gold and sequenced on a Novaseq with using a 150x150 bp sequencing kit to a depth of 25 million reads per sample		RNA-Seq	METATRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina NovaSeq 6000		SRP455253		19629X8_R2.fastq.gz 19629X8_R1.fastq.gz	fastq fastq	10758135430.0	35622965.0	19629X8 R1.fastq.gz	0:151 1:151	A:2991372806;C:2398155523;G:2517276916;T:2851104238;N:225947	151	151	2991372806	2398155523	2517276916	2851104238	225947	SRX21375280	SRS18618372	SRA1693347	University of Utah\|Quantitative Cell Science	University of Utah	2	0.88839	0.89055	0.23357	0.23344	0.72592	0.72851	0.53343	0.53081	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	trueseq	bulk	bulk	bulk	United States	2023-08-15	Adult	Adult	Gut	Digestive System
25161	25161	SRR25649182	SRX21375279	SRS18618371	SRP455253	PRJNA1005695	Metagenomic survey of zebrafish from the laboratory and the pet trade	PRJNA1005695	Other	This study involved sequencing of bulk ribo depleted RNA from intestine kidney and spleen tissues of adult zebrafish reared in the laboratory and the pet trade to identify zebrafish associated microbes in different environments. The goal was to identify viruses and other microbes that infect zebrafish to improve colony health monitoring and highlight pathogens that could be used to study infections of relevance to aquaculture and biomedicine.			19629X7	strain:unknown\|dev stage:adult\|collection date:2022 03 15\|geo loc name:USA: Salt Lake City UT\|sex:male\|tissue:intestine\|isolation source:pet trade 1\|replicate:P1\|BioSampleModel:Model organism or animal	RNA seq of adult Danio rerio from laboratory and pet trade sources	19629X7	19629X7	Fish were sacrificed and intestines whole kidney marrows and spleens were harvested for processing. All tissues were homogenized using mechanical lysis. RNA was extracted using the directzol kit Zymo. 1ml of TRIzol was used per intestine and 0.5ml of TRIzol used for individual spleens and kidneys. Following RNA extraction samples were DNAse treated Zymo. RNA ScreenTape Agilent was used to assess quality of RNA samples. Only samples with RIN scores >8 were used for analysis. RNA libraries were prepared by the High Throughput Genomics Shared Resource at the University of Utah with the Illumina TruSeq Stranded Total RNA Library Prep Ribo Zero Gold and sequenced on a Novaseq with using a 150x150 bp sequencing kit to a depth of 25 million reads per sample		RNA-Seq	METATRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina NovaSeq 6000		SRP455253		19629X7_R1.fastq.gz 19629X7_R2.fastq.gz	fastq fastq	11738178884.0	38868142.0	19629X7 R1.fastq.gz	0:151 1:151	A:3192358555;C:2674045852;G:2784070515;T:3087458659;N:245303	151	151	3192358555	2674045852	2784070515	3087458659	245303	SRX21375279	SRS18618371	SRA1693347	University of Utah\|Quantitative Cell Science	University of Utah	2	0.9074	0.90829	0.20853	0.20916	0.74115	0.74369	0.53704	0.55385	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	trueseq	bulk	bulk	bulk	United States	2023-08-15	Adult	Adult	Gut	Digestive System
61693	61693	SRR12964273	SRX9416878	SRS7632325	SRP290781	PRJNA673693	Global studies of soybean meal dietary in fish	PRJNA673693	Other	Intestinal transcriptome profile to evaluate dietary soybean meal tolerance favoring growth in adult zebrafish			LG	strain:family generated from TAB 5 DB 3 or AB\|isolate:null\|breed:zebrafish\|age:98 dpf stage:adult\|sex:male\|tissue:intestine\|biomaterial provider:Danio Biotech Company from Zebrafish for Innovation and Research ZIRLab Faculty of Sciences at University of Chile\|genotype:low w8 post a soy diet\|BioSampleModel:Model organism or animal	RNA Seq of zebrafish adult soy diet	1 8 R1	1 8 R1	RNA Seq libraries were constructed using TruSeq Stranded mRNA LT Sample Prep Kit following TruSeq Stranded mRNA Sample Preparation Guide Part #15031047 Rev. E. Briefly each sequencing library was prepared by random fragmentation of the DNA or cDNA sample followed by five prime and three prime adapter ligation. Alternatively "tagmentation" combines the fragmentation and ligation reactions into a single step that greatly increases the efficiency of the library preparation process. Adapter ligated fragments were then PCR amplified and gel purified. The fragments were sequenced with a read length of 151 base pairs using Illumina sequencing technology		RNA-Seq	TRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina HiSeq 1000		SRP290781		F1-8-CH_1.fastq.gz F1-8-CH_2.fastq.gz	fastq fastq	7325280894.0	24255897.0	F1 8 CH 1.fastq.gz	0:151 1:151	A:1918036349;C:1737589923;G:1816977467;T:1852649336;N:27819	151	151	1918036349	1737589923	1816977467	1852649336	27819	SRX9416878	SRS7632325	SRA1152184	Universidad de las Americas\|Facultad de Medicina Veterinaria y Agronomia	Universidad de las Americas	2	0.95509	0.95658	0.04684	0.04664	0.82221	0.82059	0.60005	0.56895	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	trueseq	bulk	unknown	unknown	Unknown	2020-11-02	Adult	Adult	Gut	Digestive System
61694	61694	SRR12964274	SRX9416877	SRS7632325	SRP290781	PRJNA673693	Global studies of soybean meal dietary in fish	PRJNA673693	Other	Intestinal transcriptome profile to evaluate dietary soybean meal tolerance favoring growth in adult zebrafish			LG	strain:family generated from TAB 5 DB 3 or AB\|isolate:null\|breed:zebrafish\|age:98 dpf stage:adult\|sex:male\|tissue:intestine\|biomaterial provider:Danio Biotech Company from Zebrafish for Innovation and Research ZIRLab Faculty of Sciences at University of Chile\|genotype:low w8 post a soy diet\|BioSampleModel:Model organism or animal	RNA Seq of zebrafish adult soy diet	13 1 R1	13 1 R1	RNA Seq libraries were constructed using TruSeq Stranded mRNA LT Sample Prep Kit following TruSeq Stranded mRNA Sample Preparation Guide Part #15031047 Rev. E. Briefly each sequencing library was prepared by random fragmentation of the DNA or cDNA sample followed by five prime and three prime adapter ligation. Alternatively "tagmentation" combines the fragmentation and ligation reactions into a single step that greatly increases the efficiency of the library preparation process. Adapter ligated fragments were then PCR amplified and gel purified. The fragments were sequenced with a read length of 151 base pairs using Illumina sequencing technology		RNA-Seq	TRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina HiSeq 1000		SRP290781		F13-1-CH_1.fastq.gz F13-1-CH_2.fastq.gz	fastq fastq	7204681422.0	23856561.0	F13 1 CH 1.fastq.gz	0:151 1:151	A:1865960439;C:1728161422;G:1822471558;T:1788060072;N:27931	151	151	1865960439	1728161422	1822471558	1788060072	27931	SRX9416877	SRS7632325	SRA1152184	Universidad de las Americas\|Facultad de Medicina Veterinaria y Agronomia	Universidad de las Americas	2	0.95713	0.95761	0.04562	0.04518	0.77339	0.7725	0.54579	0.55214	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	trueseq	bulk	unknown	unknown	Unknown	2020-11-02	Adult	Adult	Gut	Digestive System
61695	61695	SRR12964275	SRX9416876	SRS7632325	SRP290781	PRJNA673693	Global studies of soybean meal dietary in fish	PRJNA673693	Other	Intestinal transcriptome profile to evaluate dietary soybean meal tolerance favoring growth in adult zebrafish			LG	strain:family generated from TAB 5 DB 3 or AB\|isolate:null\|breed:zebrafish\|age:98 dpf stage:adult\|sex:male\|tissue:intestine\|biomaterial provider:Danio Biotech Company from Zebrafish for Innovation and Research ZIRLab Faculty of Sciences at University of Chile\|genotype:low w8 post a soy diet\|BioSampleModel:Model organism or animal	RNA Seq of zebrafish adult soy diet	13 6 R1	13 6 R1	RNA Seq libraries were constructed using TruSeq Stranded mRNA LT Sample Prep Kit following TruSeq Stranded mRNA Sample Preparation Guide Part #15031047 Rev. E. Briefly each sequencing library was prepared by random fragmentation of the DNA or cDNA sample followed by five prime and three prime adapter ligation. Alternatively "tagmentation" combines the fragmentation and ligation reactions into a single step that greatly increases the efficiency of the library preparation process. Adapter ligated fragments were then PCR amplified and gel purified. The fragments were sequenced with a read length of 151 base pairs using Illumina sequencing technology		RNA-Seq	TRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina HiSeq 1000		SRP290781		F13-6-CH_1.fastq.gz F13-6-CH_2.fastq.gz	fastq fastq	6717305366.0	22242733.0	F13 6 CH 1.fastq.gz	0:151 1:151	A:1751406615;C:1600949148;G:1664039061;T:1700884996;N:25546	151	151	1751406615	1600949148	1664039061	1700884996	25546	SRX9416876	SRS7632325	SRA1152184	Universidad de las Americas\|Facultad de Medicina Veterinaria y Agronomia	Universidad de las Americas	2	0.95426	0.95523	0.05393	0.0534	0.76165	0.76045	0.53973	0.54233	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	trueseq	bulk	unknown	unknown	Unknown	2020-11-02	Adult	Adult	Gut	Digestive System
61696	61696	SRR12964276	SRX9416875	SRS7632325	SRP290781	PRJNA673693	Global studies of soybean meal dietary in fish	PRJNA673693	Other	Intestinal transcriptome profile to evaluate dietary soybean meal tolerance favoring growth in adult zebrafish			LG	strain:family generated from TAB 5 DB 3 or AB\|isolate:null\|breed:zebrafish\|age:98 dpf stage:adult\|sex:male\|tissue:intestine\|biomaterial provider:Danio Biotech Company from Zebrafish for Innovation and Research ZIRLab Faculty of Sciences at University of Chile\|genotype:low w8 post a soy diet\|BioSampleModel:Model organism or animal	RNA Seq of zebrafish adult soy diet	20 4 R1	20 4 R1	RNA Seq libraries were constructed using TruSeq Stranded mRNA LT Sample Prep Kit following TruSeq Stranded mRNA Sample Preparation Guide Part #15031047 Rev. E. Briefly each sequencing library was prepared by random fragmentation of the DNA or cDNA sample followed by five prime and three prime adapter ligation. Alternatively "tagmentation" combines the fragmentation and ligation reactions into a single step that greatly increases the efficiency of the library preparation process. Adapter ligated fragments were then PCR amplified and gel purified. The fragments were sequenced with a read length of 151 base pairs using Illumina sequencing technology		RNA-Seq	TRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina HiSeq 1000		SRP290781		F20-4-CH_1.fastq.gz F20-4-CH_2.fastq.gz	fastq fastq	8278093914.0	27410907.0	F20 4 CH 1.fastq.gz	0:151 1:151	A:2152723831;C:1979642795;G:2075202406;T:2070493116;N:31766	151	151	2152723831	1979642795	2075202406	2070493116	31766	SRX9416875	SRS7632325	SRA1152184	Universidad de las Americas\|Facultad de Medicina Veterinaria y Agronomia	Universidad de las Americas	2	0.95671	0.9578	0.04994	0.04962	0.76282	0.76311	0.54822	0.55628	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	trueseq	bulk	unknown	unknown	Unknown	2020-11-02	Adult	Adult	Gut	Digestive System
61697	61697	SRR12964277	SRX9416874	SRS7632325	SRP290781	PRJNA673693	Global studies of soybean meal dietary in fish	PRJNA673693	Other	Intestinal transcriptome profile to evaluate dietary soybean meal tolerance favoring growth in adult zebrafish			LG	strain:family generated from TAB 5 DB 3 or AB\|isolate:null\|breed:zebrafish\|age:98 dpf stage:adult\|sex:male\|tissue:intestine\|biomaterial provider:Danio Biotech Company from Zebrafish for Innovation and Research ZIRLab Faculty of Sciences at University of Chile\|genotype:low w8 post a soy diet\|BioSampleModel:Model organism or animal	RNA Seq of zebrafish adult soy diet	22 3 R1	22 3 R1	RNA Seq libraries were constructed using TruSeq Stranded mRNA LT Sample Prep Kit following TruSeq Stranded mRNA Sample Preparation Guide Part #15031047 Rev. E. Briefly each sequencing library was prepared by random fragmentation of the DNA or cDNA sample followed by five prime and three prime adapter ligation. Alternatively "tagmentation" combines the fragmentation and ligation reactions into a single step that greatly increases the efficiency of the library preparation process. Adapter ligated fragments were then PCR amplified and gel purified. The fragments were sequenced with a read length of 151 base pairs using Illumina sequencing technology		RNA-Seq	TRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina HiSeq 1000		SRP290781		F22-3-CH_1.fastq.gz F22-3-CH_2.fastq.gz	fastq fastq	6744916924.0	22334162.0	F22 3 CH 1.fastq.gz	0:151 1:151	A:1735435964;C:1625676259;G:1701661616;T:1682117454;N:25631	151	151	1735435964	1625676259	1701661616	1682117454	25631	SRX9416874	SRS7632325	SRA1152184	Universidad de las Americas\|Facultad de Medicina Veterinaria y Agronomia	Universidad de las Americas	2	0.96162	0.96291	0.04811	0.04761	0.76731	0.76597	0.54763	0.55415	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	trueseq	bulk	unknown	unknown	Unknown	2020-11-02	Adult	Adult	Gut	Digestive System
61698	61698	SRR12964278	SRX9416873	SRS7632325	SRP290781	PRJNA673693	Global studies of soybean meal dietary in fish	PRJNA673693	Other	Intestinal transcriptome profile to evaluate dietary soybean meal tolerance favoring growth in adult zebrafish			LG	strain:family generated from TAB 5 DB 3 or AB\|isolate:null\|breed:zebrafish\|age:98 dpf stage:adult\|sex:male\|tissue:intestine\|biomaterial provider:Danio Biotech Company from Zebrafish for Innovation and Research ZIRLab Faculty of Sciences at University of Chile\|genotype:low w8 post a soy diet\|BioSampleModel:Model organism or animal	RNA Seq of zebrafish adult soy diet	22 5 R1	22 5 R1	RNA Seq libraries were constructed using TruSeq Stranded mRNA LT Sample Prep Kit following TruSeq Stranded mRNA Sample Preparation Guide Part #15031047 Rev. E. Briefly each sequencing library was prepared by random fragmentation of the DNA or cDNA sample followed by five prime and three prime adapter ligation. Alternatively "tagmentation" combines the fragmentation and ligation reactions into a single step that greatly increases the efficiency of the library preparation process. Adapter ligated fragments were then PCR amplified and gel purified. The fragments were sequenced with a read length of 151 base pairs using Illumina sequencing technology		RNA-Seq	TRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina HiSeq 1000		SRP290781		F22-5-CH_1.fastq.gz F22-5-CH_2.fastq.gz	fastq fastq	9233983710.0	30576105.0	F22 5 CH 1.fastq.gz	0:151 1:151	A:2414399726;C:2199826316;G:2268243787;T:2351478779;N:35102	151	151	2414399726	2199826316	2268243787	2351478779	35102	SRX9416873	SRS7632325	SRA1152184	Universidad de las Americas\|Facultad de Medicina Veterinaria y Agronomia	Universidad de las Americas	2	0.95807	0.95965	0.05505	0.05432	0.74878	0.74775	0.54766	0.53823	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	trueseq	bulk	unknown	unknown	Unknown	2020-11-02	Adult	Adult	Gut	Digestive System
61699	61699	SRR12964279	SRX9416872	SRS7632324	SRP290781	PRJNA673693	Global studies of soybean meal dietary in fish	PRJNA673693	Other	Intestinal transcriptome profile to evaluate dietary soybean meal tolerance favoring growth in adult zebrafish			HG	strain:family generated from TAB 5 DB 3 or AB\|isolate:null\|breed:zebrafish\|age:98 dpf stage:adult\|sex:male\|tissue:intestine\|biomaterial provider:Danio Biotech Company from Zebrafish for Innovation and Research ZIRLab Faculty of Sciences at University of Chile\|genotype:high w8 post a soy diet\|BioSampleModel:Model organism or animal	RNA Seq of zebrafish adult soy diet	3 7 R1	3 7 R1	RNA Seq libraries were constructed using TruSeq Stranded mRNA LT Sample Prep Kit following TruSeq Stranded mRNA Sample Preparation Guide Part #15031047 Rev. E. Briefly each sequencing library was prepared by random fragmentation of the DNA or cDNA sample followed by five prime and three prime adapter ligation. Alternatively "tagmentation" combines the fragmentation and ligation reactions into a single step that greatly increases the efficiency of the library preparation process. Adapter ligated fragments were then PCR amplified and gel purified. The fragments were sequenced with a read length of 151 base pairs using Illumina sequencing technology		RNA-Seq	TRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina HiSeq 1000		SRP290781		F3-7-GR_1.fastq.gz F3-7-GR_2.fastq.gz	fastq fastq	6885663118.0	22800209.0	F3 7 GR 1.fastq.gz	0:151 1:151	A:1812477779;C:1623127887;G:1690116325;T:1759914694;N:26433	151	151	1812477779	1623127887	1690116325	1759914694	26433	SRX9416872	SRS7632324	SRA1152184	Universidad de las Americas\|Facultad de Medicina Veterinaria y Agronomia	Universidad de las Americas	2	0.94927	0.95113	0.05683	0.05648	0.75191	0.7512	0.54881	0.52947	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	trueseq	bulk	unknown	unknown	Unknown	2020-11-02	Adult	Adult	Gut	Digestive System
61700	61700	SRR12964280	SRX9416871	SRS7632324	SRP290781	PRJNA673693	Global studies of soybean meal dietary in fish	PRJNA673693	Other	Intestinal transcriptome profile to evaluate dietary soybean meal tolerance favoring growth in adult zebrafish			HG	strain:family generated from TAB 5 DB 3 or AB\|isolate:null\|breed:zebrafish\|age:98 dpf stage:adult\|sex:male\|tissue:intestine\|biomaterial provider:Danio Biotech Company from Zebrafish for Innovation and Research ZIRLab Faculty of Sciences at University of Chile\|genotype:high w8 post a soy diet\|BioSampleModel:Model organism or animal	RNA Seq of zebrafish adult soy diet	12 8 R1	12 8 R1	RNA Seq libraries were constructed using TruSeq Stranded mRNA LT Sample Prep Kit following TruSeq Stranded mRNA Sample Preparation Guide Part #15031047 Rev. E. Briefly each sequencing library was prepared by random fragmentation of the DNA or cDNA sample followed by five prime and three prime adapter ligation. Alternatively "tagmentation" combines the fragmentation and ligation reactions into a single step that greatly increases the efficiency of the library preparation process. Adapter ligated fragments were then PCR amplified and gel purified. The fragments were sequenced with a read length of 151 base pairs using Illumina sequencing technology		RNA-Seq	TRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina HiSeq 1000		SRP290781		F12-8-GR_1.fastq.gz F12-8-GR_2.fastq.gz	fastq fastq	7444642166.0	24651133.0	F12 8 GR 1.fastq.gz	0:151 1:151	A:1929248444;C:1789983189;G:1819316431;T:1906065632;N:28470	151	151	1929248444	1789983189	1819316431	1906065632	28470	SRX9416871	SRS7632324	SRA1152184	Universidad de las Americas\|Facultad de Medicina Veterinaria y Agronomia	Universidad de las Americas	2	0.96276	0.96524	0.05604	0.05528	0.75684	0.75564	0.52829	0.54166	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	trueseq	bulk	unknown	unknown	Unknown	2020-11-02	Adult	Adult	Gut	Digestive System
61701	61701	SRR12964281	SRX9416870	SRS7632324	SRP290781	PRJNA673693	Global studies of soybean meal dietary in fish	PRJNA673693	Other	Intestinal transcriptome profile to evaluate dietary soybean meal tolerance favoring growth in adult zebrafish			HG	strain:family generated from TAB 5 DB 3 or AB\|isolate:null\|breed:zebrafish\|age:98 dpf stage:adult\|sex:male\|tissue:intestine\|biomaterial provider:Danio Biotech Company from Zebrafish for Innovation and Research ZIRLab Faculty of Sciences at University of Chile\|genotype:high w8 post a soy diet\|BioSampleModel:Model organism or animal	RNA Seq of zebrafish adult soy diet	3 9 R1	3 9 R1	RNA Seq libraries were constructed using TruSeq Stranded mRNA LT Sample Prep Kit following TruSeq Stranded mRNA Sample Preparation Guide Part #15031047 Rev. E. Briefly each sequencing library was prepared by random fragmentation of the DNA or cDNA sample followed by five prime and three prime adapter ligation. Alternatively "tagmentation" combines the fragmentation and ligation reactions into a single step that greatly increases the efficiency of the library preparation process. Adapter ligated fragments were then PCR amplified and gel purified. The fragments were sequenced with a read length of 151 base pairs using Illumina sequencing technology		RNA-Seq	TRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina HiSeq 1000		SRP290781		F3-9-GR_1.fastq.gz F3-9-GR_2.fastq.gz	fastq fastq	8809498550.0	29170525.0	F3 9 GR 1.fastq.gz	0:151 1:151	A:2306194345;C:2098546233;G:2173624200;T:2231100146;N:33626	151	151	2306194345	2098546233	2173624200	2231100146	33626	SRX9416870	SRS7632324	SRA1152184	Universidad de las Americas\|Facultad de Medicina Veterinaria y Agronomia	Universidad de las Americas	2	0.95932	0.96111	0.05271	0.05227	0.7514	0.75097	0.55339	0.55085	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	trueseq	bulk	unknown	unknown	Unknown	2020-11-02	Adult	Adult	Gut	Digestive System
61702	61702	SRR12964282	SRX9416869	SRS7632324	SRP290781	PRJNA673693	Global studies of soybean meal dietary in fish	PRJNA673693	Other	Intestinal transcriptome profile to evaluate dietary soybean meal tolerance favoring growth in adult zebrafish			HG	strain:family generated from TAB 5 DB 3 or AB\|isolate:null\|breed:zebrafish\|age:98 dpf stage:adult\|sex:male\|tissue:intestine\|biomaterial provider:Danio Biotech Company from Zebrafish for Innovation and Research ZIRLab Faculty of Sciences at University of Chile\|genotype:high w8 post a soy diet\|BioSampleModel:Model organism or animal	RNA Seq of zebrafish adult soy diet	21 7 R1	21 7 R1	RNA Seq libraries were constructed using TruSeq Stranded mRNA LT Sample Prep Kit following TruSeq Stranded mRNA Sample Preparation Guide Part #15031047 Rev. E. Briefly each sequencing library was prepared by random fragmentation of the DNA or cDNA sample followed by five prime and three prime adapter ligation. Alternatively "tagmentation" combines the fragmentation and ligation reactions into a single step that greatly increases the efficiency of the library preparation process. Adapter ligated fragments were then PCR amplified and gel purified. The fragments were sequenced with a read length of 151 base pairs using Illumina sequencing technology		RNA-Seq	TRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina HiSeq 1000		SRP290781		F21-7-GR_1.fastq.gz F21-7-GR_2.fastq.gz	fastq fastq	9035029734.0	29917317.0	F21 7 GR 1.fastq.gz	0:151 1:151	A:2358940333;C:2147949025;G:2221572455;T:2306533838;N:34083	151	151	2358940333	2147949025	2221572455	2306533838	34083	SRX9416869	SRS7632324	SRA1152184	Universidad de las Americas\|Facultad de Medicina Veterinaria y Agronomia	Universidad de las Americas	2	0.94873	0.95017	0.05513	0.05454	0.75073	0.75061	0.54564	0.55234	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	trueseq	bulk	unknown	unknown	Unknown	2020-11-02	Adult	Adult	Gut	Digestive System
61703	61703	SRR12964283	SRX9416868	SRS7632324	SRP290781	PRJNA673693	Global studies of soybean meal dietary in fish	PRJNA673693	Other	Intestinal transcriptome profile to evaluate dietary soybean meal tolerance favoring growth in adult zebrafish			HG	strain:family generated from TAB 5 DB 3 or AB\|isolate:null\|breed:zebrafish\|age:98 dpf stage:adult\|sex:male\|tissue:intestine\|biomaterial provider:Danio Biotech Company from Zebrafish for Innovation and Research ZIRLab Faculty of Sciences at University of Chile\|genotype:high w8 post a soy diet\|BioSampleModel:Model organism or animal	RNA Seq of zebrafish adult soy diet	21 1 R1	21 1 R1	RNA Seq libraries were constructed using TruSeq Stranded mRNA LT Sample Prep Kit following TruSeq Stranded mRNA Sample Preparation Guide Part #15031047 Rev. E. Briefly each sequencing library was prepared by random fragmentation of the DNA or cDNA sample followed by five prime and three prime adapter ligation. Alternatively "tagmentation" combines the fragmentation and ligation reactions into a single step that greatly increases the efficiency of the library preparation process. Adapter ligated fragments were then PCR amplified and gel purified. The fragments were sequenced with a read length of 151 base pairs using Illumina sequencing technology		RNA-Seq	TRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina HiSeq 1000		SRP290781		F21-1-GR_1.fastq.gz F21-1-GR_2.fastq.gz	fastq fastq	8985193090.0	29752295.0	F21 1 GR 1.fastq.gz	0:151 1:151	A:2309244915;C:2172345682;G:2225381374;T:2278186696;N:34423	151	151	2309244915	2172345682	2225381374	2278186696	34423	SRX9416868	SRS7632324	SRA1152184	Universidad de las Americas\|Facultad de Medicina Veterinaria y Agronomia	Universidad de las Americas	2	0.95801	0.96086	0.05089	0.05045	0.75643	0.7554	0.54732	0.51671	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	trueseq	bulk	unknown	unknown	Unknown	2020-11-02	Adult	Adult	Gut	Digestive System
71597	71597	SRR21780858	SRX17775679	SRS15301946	SRP400655	PRJNA885906	Cell Type Specific Responses to the Microbiota Across All Tissues of the Larval Zebrafish	PRJNA885906	Other	The transcriptional responses of the host zebrafish to the presence of the microbiota was assessed across all cell types throughout the larval body at single cell resolution. The goal of this work is to generate a resource for generating new hypotheses about the intricate interactions between animal hosts and their microbiota.		BefA diss	BefA 1532	strain:Tgins; eGFP\|dev stage:6dpf\|sex:not applicable\|tissue:dissected digestive systems\|BioSampleModel:Model organism or animal	germ free 6dpf dissected digestive systems treated with protein	1532	1532	the cells are from dissected guts from germ free larvae but were treated with exogenous protein		RNA-Seq	TRANSCRIPTOMIC SINGLE CELL	RANDOM	PAIRED	ILLUMINA	Illumina HiSeq 4000		SRP400655		BefAdiss_S2_L008_R1_001.fastq.gz BefAdiss_S2_L008_R2_001.fastq.gz	fastq fastq	62618506720.0	355786970.0	BefAdiss S2 L008 R1 001.fastq.gz	0:26 1:150	A:18434729847;C:13374700052;G:13922149278;T:16789619859;N:97307684	26	150	18434729847	13374700052	13922149278	16789619859	97307684	SRX17775679	SRS15301946	SRA1511285	University of Oregon\|Institute of Molecular Biology	University of Oregon	2	0.00182	0.89692	0.00064	0.07716	0.9962	0.82798	0.42608	0.6075	26	150	T	B	sc-like readlen	illumina	hiseq_era	unknown	random_priming	unknown	sc	unknown	unknown	United States	2022-10-02	Larval	Larval	Gut	Digestive System
71598	71598	SRR21780859	SRX17775678	SRS15301945	SRP400655	PRJNA885906	Cell Type Specific Responses to the Microbiota Across All Tissues of the Larval Zebrafish	PRJNA885906	Other	The transcriptional responses of the host zebrafish to the presence of the microbiota was assessed across all cell types throughout the larval body at single cell resolution. The goal of this work is to generate a resource for generating new hypotheses about the intricate interactions between animal hosts and their microbiota.		GF diss2	GF 1531	strain:Tgins; eGFP\|dev stage:6dpf\|sex:not applicable\|tissue:dissected digestive systems\|BioSampleModel:Model organism or animal	germ free 6dpf dissected digestive systems lane 2	1531	1531	the cells dissected guts from germ free larvae were split across two lanes library 1530/1531 come from same sample		RNA-Seq	TRANSCRIPTOMIC SINGLE CELL	RANDOM	PAIRED	ILLUMINA	Illumina HiSeq 4000		SRP400655		GFdiss2_S1_L004_R1_001.fastq.gz GFdiss2_S1_L004_R2_001.fastq.gz	fastq fastq	66862372720.0	379899845.0	GFdiss2 S1 L004 R1 001.fastq.gz	0:26 1:150	A:10814720171;C:8609009803;G:8785194946;T:9942289999;N:28711157801	26	150	10814720171	8609009803	8785194946	9942289999	28711157801	SRX17775678	SRS15301945	SRA1511285	University of Oregon\|Institute of Molecular Biology	University of Oregon	2	0.00191	0.92014	0.00074	0.08575	0.99616	0.87793	0.35964	0.58459	26	150	T	B	sc-like readlen	illumina	hiseq_era	unknown	random_priming	unknown	sc	unknown	unknown	United States	2022-10-02	Larval	Larval	Gut	Digestive System
71599	71599	SRR21780860	SRX17775677	SRS15301944	SRP400655	PRJNA885906	Cell Type Specific Responses to the Microbiota Across All Tissues of the Larval Zebrafish	PRJNA885906	Other	The transcriptional responses of the host zebrafish to the presence of the microbiota was assessed across all cell types throughout the larval body at single cell resolution. The goal of this work is to generate a resource for generating new hypotheses about the intricate interactions between animal hosts and their microbiota.		GF diss1	GF 1530	strain:Tgins; eGFP\|dev stage:6dpf\|sex:not applicable\|tissue:dissected digestive systems\|BioSampleModel:Model organism or animal	germ free 6dpf dissected digestive systems lane 1	1530	1530	the cells dissected guts from germ free larvae were split across two lanes library 1530/1531 come from same sample		RNA-Seq	TRANSCRIPTOMIC SINGLE CELL	RANDOM	PAIRED	ILLUMINA	Illumina HiSeq 4000		SRP400655		GFdiss1_S1_L007_R1_001.fastq.gz GFdiss1_S1_L007_R2_001.fastq.gz	fastq fastq	63769716736.0	362327936.0	GFdiss1 S1 L007 R1 001.fastq.gz	0:26 1:150	A:18291156920;C:14095548431;G:14421791117;T:16786925671;N:174294597	26	150	18291156920	14095548431	14421791117	16786925671	174294597	SRX17775677	SRS15301944	SRA1511285	University of Oregon\|Institute of Molecular Biology	University of Oregon	2	0.00172	0.91725	0.00064	0.08763	0.99648	0.82804	0.39234	0.5982	26	150	T	B	sc-like readlen	illumina	hiseq_era	unknown	random_priming	unknown	sc	unknown	unknown	United States	2022-10-02	Larval	Larval	Gut	Digestive System

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;