metadata: run_metadata: 12 rows where experiment.library_selection = "RANDOM", technology = "bulk" and tissue_curation

12 rows where experiment.library_selection = "RANDOM", technology = "bulk" and tissue_curation_coarse = "Nervous System"

descending

Link	rowid ▼	run.accession	experiment.accession	sample.accession	study.accession	bioproject	study.title	study.alias	study.type	study.abstract	study.attributes	sample.description	sample.title	sample.alias	sample.centername	sample.attributes	experiment.title	experiment.alias	experiment.library_name	experiment.design_description	experiment.library_construction_protocol	experiment.attributes	experiment.library_strategy	experiment.library_source	experiment.library_selection	experiment.library_layout	experiment.platform	experiment.instrument_model	experiment.study_ref	run.title	run.attributes	run.filename	run.semantic_name	run.alias	run.read_lengths	run.base_counts	run.r1_length	run.r2_length	run.Acount	run.Ccount	run.Gcount	run.Tcount	run.Ncount	run.experiment	run.pool_member	submission.accession	submission.srasource	submission.bioprojectsource	seqdetective.n_mates	seqdetective.mapping_rate.mate1	seqdetective.mapping_rate.mate2	seqdetective.nofeature_rate.mate1	seqdetective.nofeature_rate.mate2	seqdetective.sparsity.mate1	seqdetective.sparsity.mate2	seqdetective.pos_strand_rate.mate1	seqdetective.pos_strand_rate.mate2	seqdetective.readlen.mate1	seqdetective.readlen.mate2	seqdetective.judgement.mate1	seqdetective.judgement.mate2	seqdetective.judgement.reason	platform_family	instrument_generation	read_bias	selection_class	prep_kit	sc_or_bulk	tech_class	technology	submission.bioprojectsource.country	earliest_date	devstage_curation	devstage_curation_coarse	tissue_curation	tissue_curation_coarse
10391	10391	ERR8516975	ERX8083451	ERS10521298	ERP135383	PRJEB50776	Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	E-MTAB-11431	Other	Zebrafish primary neurons either sfpq sibling/control +/+ +/ or null / were cultured in transwell inserts. At DIV2 for each genotype cellular and neurite tissues were separately isolated RNA extracted and total RNAseq performed.	ENA FIRST PUBLIC:2022 02 19\|ENA LAST UPDATE:2022 02 19	Protocols: Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion	Sibling neurite	SAMEA12922152	Centre for Developmental Neurobiology, King's College London	ENA first public:2022 02 19\|ENA last update:2022 02 19\|External Id:SAMEA12922152\|INSDC center alias:Centre for Developmental Neurobiology King's College London\|INSDC center name:Centre for Developmental Neurobiology King's College London\|INSDC first public:2022 02 19T00:15:43Z\|INSDC last update:2022 02 19T00:15:43Z\|INSDC status:public\|Submitter Id:E MTAB 11431:Sibling neurite\|broker name:ArrayExpress\|common name:zebrafish\|genotype:sfpq sibling +/+ and +/ \|growth condition:transwell culture\|organism part:neurite\|sample name:E MTAB 11431:Sibling neurite	Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	E MTAB 11431:Sibling neurite p	Sibling neurite p	Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion	Experimental Factor: genotype:sfpq sibling +/+ and +/ \|Experimental Factor: organism part:neurite	RNA-Seq	TRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina NovaSeq 6000	ERP135383	Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	ENA FIRST PUBLIC:2022 02 19\|ENA LAST UPDATE:2022 02 19\|loader:fastq load.py	15812X4_190227_A00421_38_AH7523DRXX_S56_R1_001.fastq.gz 15812X4_190227_A00421_38_AH7523DRXX_S56_R2_001.fastq.gz	fastq fastq	E MTAB 11431:15812X4 190227 A00421 38 AH7523DRXX S56 R	0:51 1:51	A:1077092958;C:949537387;G:955020348;T:1099432979;N:20556852	51	51	1077092958	949537387	955020348	1099432979	20556852	ERX8083451	ERS10521298	ERA8932807	Centre for Developmental Neurobiology, King	Centre for Developmental Neurobiology, King	2	0.9053	0.9259	0.21658	0.22155	0.69369	0.69179	0.50726	0.50871	51	51	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	ribozero	bulk	bulk	bulk	United Kingdom	2022-02-19	Undetermined	Undetermined	Brain	Nervous System
10392	10392	ERR8516976	ERX8083451	ERS10521298	ERP135383	PRJEB50776	Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	E-MTAB-11431	Other	Zebrafish primary neurons either sfpq sibling/control +/+ +/ or null / were cultured in transwell inserts. At DIV2 for each genotype cellular and neurite tissues were separately isolated RNA extracted and total RNAseq performed.	ENA FIRST PUBLIC:2022 02 19\|ENA LAST UPDATE:2022 02 19	Protocols: Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion	Sibling neurite	SAMEA12922152	Centre for Developmental Neurobiology, King's College London	ENA first public:2022 02 19\|ENA last update:2022 02 19\|External Id:SAMEA12922152\|INSDC center alias:Centre for Developmental Neurobiology King's College London\|INSDC center name:Centre for Developmental Neurobiology King's College London\|INSDC first public:2022 02 19T00:15:43Z\|INSDC last update:2022 02 19T00:15:43Z\|INSDC status:public\|Submitter Id:E MTAB 11431:Sibling neurite\|broker name:ArrayExpress\|common name:zebrafish\|genotype:sfpq sibling +/+ and +/ \|growth condition:transwell culture\|organism part:neurite\|sample name:E MTAB 11431:Sibling neurite	Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	E MTAB 11431:Sibling neurite p	Sibling neurite p	Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion	Experimental Factor: genotype:sfpq sibling +/+ and +/ \|Experimental Factor: organism part:neurite	RNA-Seq	TRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina NovaSeq 6000	ERP135383	Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	ENA FIRST PUBLIC:2022 02 19\|ENA LAST UPDATE:2022 02 19\|loader:fastq load.py	15812X5_190227_A00421_38_AH7523DRXX_S55_R1_001.fastq.gz 15812X5_190227_A00421_38_AH7523DRXX_S55_R2_001.fastq.gz	fastq fastq	E MTAB 11431:15812X5 190227 A00421 38 AH7523DRXX S55 R	0:51 1:51	A:972081222;C:890179393;G:888655698;T:998443264;N:18934747	51	51	972081222	890179393	888655698	998443264	18934747	ERX8083451	ERS10521298	ERA8932807	Centre for Developmental Neurobiology, King	Centre for Developmental Neurobiology, King	2	0.86107	0.87807	0.22063	0.23029	0.70859	0.70561	0.51656	0.51946	51	51	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	ribozero	bulk	bulk	bulk	United Kingdom	2022-02-19	Undetermined	Undetermined	Brain	Nervous System
10393	10393	ERR8516977	ERX8083451	ERS10521298	ERP135383	PRJEB50776	Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	E-MTAB-11431	Other	Zebrafish primary neurons either sfpq sibling/control +/+ +/ or null / were cultured in transwell inserts. At DIV2 for each genotype cellular and neurite tissues were separately isolated RNA extracted and total RNAseq performed.	ENA FIRST PUBLIC:2022 02 19\|ENA LAST UPDATE:2022 02 19	Protocols: Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion	Sibling neurite	SAMEA12922152	Centre for Developmental Neurobiology, King's College London	ENA first public:2022 02 19\|ENA last update:2022 02 19\|External Id:SAMEA12922152\|INSDC center alias:Centre for Developmental Neurobiology King's College London\|INSDC center name:Centre for Developmental Neurobiology King's College London\|INSDC first public:2022 02 19T00:15:43Z\|INSDC last update:2022 02 19T00:15:43Z\|INSDC status:public\|Submitter Id:E MTAB 11431:Sibling neurite\|broker name:ArrayExpress\|common name:zebrafish\|genotype:sfpq sibling +/+ and +/ \|growth condition:transwell culture\|organism part:neurite\|sample name:E MTAB 11431:Sibling neurite	Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	E MTAB 11431:Sibling neurite p	Sibling neurite p	Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion	Experimental Factor: genotype:sfpq sibling +/+ and +/ \|Experimental Factor: organism part:neurite	RNA-Seq	TRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina NovaSeq 6000	ERP135383	Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	ENA FIRST PUBLIC:2022 02 19\|ENA LAST UPDATE:2022 02 19\|loader:fastq load.py	15812X6_190227_A00421_38_AH7523DRXX_S54_R1_001.fastq.gz 15812X6_190227_A00421_38_AH7523DRXX_S54_R2_001.fastq.gz	fastq fastq	E MTAB 11431:15812X6 190227 A00421 38 AH7523DRXX S54 R	0:51 1:51	A:728798881;C:962223604;G:958876331;T:735449513;N:17094231	51	51	728798881	962223604	958876331	735449513	17094231	ERX8083451	ERS10521298	ERA8932807	Centre for Developmental Neurobiology, King	Centre for Developmental Neurobiology, King	2	0.54616	0.55881	0.13313	0.14036	0.84295	0.84185	0.64193	0.59762	51	51	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	ribozero	bulk	bulk	bulk	United Kingdom	2022-02-19	Undetermined	Undetermined	Brain	Nervous System
10394	10394	ERR8516972	ERX8083450	ERS10521297	ERP135383	PRJEB50776	Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	E-MTAB-11431	Other	Zebrafish primary neurons either sfpq sibling/control +/+ +/ or null / were cultured in transwell inserts. At DIV2 for each genotype cellular and neurite tissues were separately isolated RNA extracted and total RNAseq performed.	ENA FIRST PUBLIC:2022 02 19\|ENA LAST UPDATE:2022 02 19	Protocols: Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion	Sibling cellular	SAMEA12922151	Centre for Developmental Neurobiology, King's College London	ENA first public:2022 02 19\|ENA last update:2022 02 19\|External Id:SAMEA12922151\|INSDC center alias:Centre for Developmental Neurobiology King's College London\|INSDC center name:Centre for Developmental Neurobiology King's College London\|INSDC first public:2022 02 19T00:15:43Z\|INSDC last update:2022 02 19T00:15:43Z\|INSDC status:public\|Submitter Id:E MTAB 11431:Sibling cellular\|broker name:ArrayExpress\|common name:zebrafish\|genotype:sfpq sibling +/+ and +/ \|growth condition:transwell culture\|organism part:neuron\|sample name:E MTAB 11431:Sibling cellular	Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	E MTAB 11431:Sibling cellular p	Sibling cellular p	Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion	Experimental Factor: genotype:sfpq sibling +/+ and +/ \|Experimental Factor: organism part:neuron	RNA-Seq	TRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina NovaSeq 6000	ERP135383	Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	ENA FIRST PUBLIC:2022 02 19\|ENA LAST UPDATE:2022 02 19\|loader:fastq load.py	15812X1_190227_A00421_38_AH7523DRXX_S59_R1_001.fastq.gz 15812X1_190227_A00421_38_AH7523DRXX_S59_R2_001.fastq.gz	fastq fastq	E MTAB 11431:15812X1 190227 A00421 38 AH7523DRXX S59 R	0:51 1:51	A:837274632;C:1062368015;G:1049892288;T:853310517;N:19213786	51	51	837274632	1062368015	1049892288	853310517	19213786	ERX8083450	ERS10521297	ERA8932807	Centre for Developmental Neurobiology, King	Centre for Developmental Neurobiology, King	2	0.5726	0.57788	0.13781	0.14082	0.80616	0.80452	0.61581	0.60389	51	51	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	ribozero	bulk	bulk	bulk	United Kingdom	2022-02-19	Undetermined	Undetermined	Brain	Nervous System
10395	10395	ERR8516973	ERX8083450	ERS10521297	ERP135383	PRJEB50776	Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	E-MTAB-11431	Other	Zebrafish primary neurons either sfpq sibling/control +/+ +/ or null / were cultured in transwell inserts. At DIV2 for each genotype cellular and neurite tissues were separately isolated RNA extracted and total RNAseq performed.	ENA FIRST PUBLIC:2022 02 19\|ENA LAST UPDATE:2022 02 19	Protocols: Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion	Sibling cellular	SAMEA12922151	Centre for Developmental Neurobiology, King's College London	ENA first public:2022 02 19\|ENA last update:2022 02 19\|External Id:SAMEA12922151\|INSDC center alias:Centre for Developmental Neurobiology King's College London\|INSDC center name:Centre for Developmental Neurobiology King's College London\|INSDC first public:2022 02 19T00:15:43Z\|INSDC last update:2022 02 19T00:15:43Z\|INSDC status:public\|Submitter Id:E MTAB 11431:Sibling cellular\|broker name:ArrayExpress\|common name:zebrafish\|genotype:sfpq sibling +/+ and +/ \|growth condition:transwell culture\|organism part:neuron\|sample name:E MTAB 11431:Sibling cellular	Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	E MTAB 11431:Sibling cellular p	Sibling cellular p	Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion	Experimental Factor: genotype:sfpq sibling +/+ and +/ \|Experimental Factor: organism part:neuron	RNA-Seq	TRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina NovaSeq 6000	ERP135383	Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	ENA FIRST PUBLIC:2022 02 19\|ENA LAST UPDATE:2022 02 19\|loader:fastq load.py	15812X2_190227_A00421_38_AH7523DRXX_S58_R1_001.fastq.gz 15812X2_190227_A00421_38_AH7523DRXX_S58_R2_001.fastq.gz	fastq fastq	E MTAB 11431:15812X2 190227 A00421 38 AH7523DRXX S58 R	0:51 1:51	A:897813231;C:796012893;G:794839496;T:923696030;N:17221274	51	51	897813231	796012893	794839496	923696030	17221274	ERX8083450	ERS10521297	ERA8932807	Centre for Developmental Neurobiology, King	Centre for Developmental Neurobiology, King	2	0.92095	0.94156	0.18892	0.20024	0.6901	0.68905	0.49377	0.50086	51	51	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	ribozero	bulk	bulk	bulk	United Kingdom	2022-02-19	Undetermined	Undetermined	Brain	Nervous System
10396	10396	ERR8516974	ERX8083450	ERS10521297	ERP135383	PRJEB50776	Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	E-MTAB-11431	Other	Zebrafish primary neurons either sfpq sibling/control +/+ +/ or null / were cultured in transwell inserts. At DIV2 for each genotype cellular and neurite tissues were separately isolated RNA extracted and total RNAseq performed.	ENA FIRST PUBLIC:2022 02 19\|ENA LAST UPDATE:2022 02 19	Protocols: Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion	Sibling cellular	SAMEA12922151	Centre for Developmental Neurobiology, King's College London	ENA first public:2022 02 19\|ENA last update:2022 02 19\|External Id:SAMEA12922151\|INSDC center alias:Centre for Developmental Neurobiology King's College London\|INSDC center name:Centre for Developmental Neurobiology King's College London\|INSDC first public:2022 02 19T00:15:43Z\|INSDC last update:2022 02 19T00:15:43Z\|INSDC status:public\|Submitter Id:E MTAB 11431:Sibling cellular\|broker name:ArrayExpress\|common name:zebrafish\|genotype:sfpq sibling +/+ and +/ \|growth condition:transwell culture\|organism part:neuron\|sample name:E MTAB 11431:Sibling cellular	Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	E MTAB 11431:Sibling cellular p	Sibling cellular p	Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion	Experimental Factor: genotype:sfpq sibling +/+ and +/ \|Experimental Factor: organism part:neuron	RNA-Seq	TRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina NovaSeq 6000	ERP135383	Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	ENA FIRST PUBLIC:2022 02 19\|ENA LAST UPDATE:2022 02 19\|loader:fastq load.py	15812X3_190227_A00421_38_AH7523DRXX_S57_R1_001.fastq.gz 15812X3_190227_A00421_38_AH7523DRXX_S57_R2_001.fastq.gz	fastq fastq	E MTAB 11431:15812X3 190227 A00421 38 AH7523DRXX S57 R	0:51 1:51	A:951912827;C:1107150666;G:1086060798;T:973791571;N:20785248	51	51	951912827	1107150666	1086060798	973791571	20785248	ERX8083450	ERS10521297	ERA8932807	Centre for Developmental Neurobiology, King	Centre for Developmental Neurobiology, King	2	0.63792	0.62667	0.18547	0.18671	0.78756	0.78549	0.59274	0.55478	51	51	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	ribozero	bulk	bulk	bulk	United Kingdom	2022-02-19	Undetermined	Undetermined	Brain	Nervous System
10397	10397	ERR8516969	ERX8083449	ERS10521296	ERP135383	PRJEB50776	Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	E-MTAB-11431	Other	Zebrafish primary neurons either sfpq sibling/control +/+ +/ or null / were cultured in transwell inserts. At DIV2 for each genotype cellular and neurite tissues were separately isolated RNA extracted and total RNAseq performed.	ENA FIRST PUBLIC:2022 02 19\|ENA LAST UPDATE:2022 02 19	Protocols: Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion	Null neurite	SAMEA12922150	Centre for Developmental Neurobiology, King's College London	ENA first public:2022 02 19\|ENA last update:2022 02 19\|External Id:SAMEA12922150\|INSDC center alias:Centre for Developmental Neurobiology King's College London\|INSDC center name:Centre for Developmental Neurobiology King's College London\|INSDC first public:2022 02 19T00:15:43Z\|INSDC last update:2022 02 19T00:15:43Z\|INSDC status:public\|Submitter Id:E MTAB 11431:Null neurite\|broker name:ArrayExpress\|common name:zebrafish\|genotype:sfpq null / \|growth condition:transwell culture\|organism part:neurite\|sample name:E MTAB 11431:Null neurite	Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	E MTAB 11431:Null neurite p	Null neurite p	Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion	Experimental Factor: genotype:sfpq null / \|Experimental Factor: organism part:neurite	RNA-Seq	TRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina NovaSeq 6000	ERP135383	Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	ENA FIRST PUBLIC:2022 02 19\|ENA LAST UPDATE:2022 02 19\|loader:fastq load.py	15812X10_190227_A00421_38_AH7523DRXX_S48_R1_001.fastq.gz 15812X10_190227_A00421_38_AH7523DRXX_S48_R2_001.fastq.gz	fastq fastq	E MTAB 11431:15812X10 190227 A00421 38 AH7523DRXX S48 R	0:51 1:51	A:925784769;C:934445856;G:959155668;T:924080408;N:18878983	51	51	925784769	934445856	959155668	924080408	18878983	ERX8083449	ERS10521296	ERA8932807	Centre for Developmental Neurobiology, King	Centre for Developmental Neurobiology, King	2	0.59503	0.61112	0.1947	0.20225	0.76512	0.76337	0.54584	0.54345	51	51	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	ribozero	bulk	bulk	bulk	United Kingdom	2022-02-19	Undetermined	Undetermined	Brain	Nervous System
10398	10398	ERR8516970	ERX8083449	ERS10521296	ERP135383	PRJEB50776	Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	E-MTAB-11431	Other	Zebrafish primary neurons either sfpq sibling/control +/+ +/ or null / were cultured in transwell inserts. At DIV2 for each genotype cellular and neurite tissues were separately isolated RNA extracted and total RNAseq performed.	ENA FIRST PUBLIC:2022 02 19\|ENA LAST UPDATE:2022 02 19	Protocols: Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion	Null neurite	SAMEA12922150	Centre for Developmental Neurobiology, King's College London	ENA first public:2022 02 19\|ENA last update:2022 02 19\|External Id:SAMEA12922150\|INSDC center alias:Centre for Developmental Neurobiology King's College London\|INSDC center name:Centre for Developmental Neurobiology King's College London\|INSDC first public:2022 02 19T00:15:43Z\|INSDC last update:2022 02 19T00:15:43Z\|INSDC status:public\|Submitter Id:E MTAB 11431:Null neurite\|broker name:ArrayExpress\|common name:zebrafish\|genotype:sfpq null / \|growth condition:transwell culture\|organism part:neurite\|sample name:E MTAB 11431:Null neurite	Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	E MTAB 11431:Null neurite p	Null neurite p	Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion	Experimental Factor: genotype:sfpq null / \|Experimental Factor: organism part:neurite	RNA-Seq	TRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina NovaSeq 6000	ERP135383	Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	ENA FIRST PUBLIC:2022 02 19\|ENA LAST UPDATE:2022 02 19\|loader:fastq load.py	15812X11_190227_A00421_38_AH7523DRXX_S52_R1_001.fastq.gz 15812X11_190227_A00421_38_AH7523DRXX_S52_R2_001.fastq.gz	fastq fastq	E MTAB 11431:15812X11 190227 A00421 38 AH7523DRXX S52 R	0:51 1:51	A:991755033;C:864808531;G:892202564;T:992188806;N:18881958	51	51	991755033	864808531	892202564	992188806	18881958	ERX8083449	ERS10521296	ERA8932807	Centre for Developmental Neurobiology, King	Centre for Developmental Neurobiology, King	2	0.86612	0.88689	0.26181	0.2728	0.7094	0.7091	0.53639	0.53906	51	51	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	ribozero	bulk	bulk	bulk	United Kingdom	2022-02-19	Undetermined	Undetermined	Brain	Nervous System
10399	10399	ERR8516971	ERX8083449	ERS10521296	ERP135383	PRJEB50776	Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	E-MTAB-11431	Other	Zebrafish primary neurons either sfpq sibling/control +/+ +/ or null / were cultured in transwell inserts. At DIV2 for each genotype cellular and neurite tissues were separately isolated RNA extracted and total RNAseq performed.	ENA FIRST PUBLIC:2022 02 19\|ENA LAST UPDATE:2022 02 19	Protocols: Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion	Null neurite	SAMEA12922150	Centre for Developmental Neurobiology, King's College London	ENA first public:2022 02 19\|ENA last update:2022 02 19\|External Id:SAMEA12922150\|INSDC center alias:Centre for Developmental Neurobiology King's College London\|INSDC center name:Centre for Developmental Neurobiology King's College London\|INSDC first public:2022 02 19T00:15:43Z\|INSDC last update:2022 02 19T00:15:43Z\|INSDC status:public\|Submitter Id:E MTAB 11431:Null neurite\|broker name:ArrayExpress\|common name:zebrafish\|genotype:sfpq null / \|growth condition:transwell culture\|organism part:neurite\|sample name:E MTAB 11431:Null neurite	Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	E MTAB 11431:Null neurite p	Null neurite p	Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion	Experimental Factor: genotype:sfpq null / \|Experimental Factor: organism part:neurite	RNA-Seq	TRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina NovaSeq 6000	ERP135383	Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	ENA FIRST PUBLIC:2022 02 19\|ENA LAST UPDATE:2022 02 19\|loader:fastq load.py	15812X12_190227_A00421_38_AH7523DRXX_S50_R1_001.fastq.gz 15812X12_190227_A00421_38_AH7523DRXX_S50_R2_001.fastq.gz	fastq fastq	E MTAB 11431:15812X12 190227 A00421 38 AH7523DRXX S50 R	0:51 1:51	A:766707527;C:798667604;G:818782599;T:773280942;N:15938306	51	51	766707527	798667604	818782599	773280942	15938306	ERX8083449	ERS10521296	ERA8932807	Centre for Developmental Neurobiology, King	Centre for Developmental Neurobiology, King	2	0.88811	0.92834	0.21869	0.22669	0.72878	0.72604	0.55598	0.57831	51	51	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	ribozero	bulk	bulk	bulk	United Kingdom	2022-02-19	Undetermined	Undetermined	Brain	Nervous System
10400	10400	ERR8516966	ERX8083448	ERS10521295	ERP135383	PRJEB50776	Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	E-MTAB-11431	Other	Zebrafish primary neurons either sfpq sibling/control +/+ +/ or null / were cultured in transwell inserts. At DIV2 for each genotype cellular and neurite tissues were separately isolated RNA extracted and total RNAseq performed.	ENA FIRST PUBLIC:2022 02 19\|ENA LAST UPDATE:2022 02 19	Protocols: Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion	Null cellular	SAMEA12922149	Centre for Developmental Neurobiology, King's College London	ENA first public:2022 02 19\|ENA last update:2022 02 19\|External Id:SAMEA12922149\|INSDC center alias:Centre for Developmental Neurobiology King's College London\|INSDC center name:Centre for Developmental Neurobiology King's College London\|INSDC first public:2022 02 19T00:15:43Z\|INSDC last update:2022 02 19T00:15:43Z\|INSDC status:public\|Submitter Id:E MTAB 11431:Null cellular\|broker name:ArrayExpress\|common name:zebrafish\|genotype:sfpq null / \|growth condition:transwell culture\|organism part:neuron\|sample name:E MTAB 11431:Null cellular	Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	E MTAB 11431:Null cellular p	Null cellular p	Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion	Experimental Factor: genotype:sfpq null / \|Experimental Factor: organism part:neuron	RNA-Seq	TRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina NovaSeq 6000	ERP135383	Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	ENA FIRST PUBLIC:2022 02 19\|ENA LAST UPDATE:2022 02 19\|loader:fastq load.py	15812X7_190227_A00421_38_AH7523DRXX_S53_R1_001.fastq.gz 15812X7_190227_A00421_38_AH7523DRXX_S53_R2_001.fastq.gz	fastq fastq	E MTAB 11431:15812X7 190227 A00421 38 AH7523DRXX S53 R	0:51 1:51	A:774360373;C:720215184;G:719479745;T:796239200;N:15182374	51	51	774360373	720215184	719479745	796239200	15182374	ERX8083448	ERS10521295	ERA8932807	Centre for Developmental Neurobiology, King	Centre for Developmental Neurobiology, King	2	0.79643	0.81194	0.25554	0.2603	0.72236	0.72021	0.51775	0.51678	51	51	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	ribozero	bulk	bulk	bulk	United Kingdom	2022-02-19	Undetermined	Undetermined	Brain	Nervous System
10401	10401	ERR8516967	ERX8083448	ERS10521295	ERP135383	PRJEB50776	Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	E-MTAB-11431	Other	Zebrafish primary neurons either sfpq sibling/control +/+ +/ or null / were cultured in transwell inserts. At DIV2 for each genotype cellular and neurite tissues were separately isolated RNA extracted and total RNAseq performed.	ENA FIRST PUBLIC:2022 02 19\|ENA LAST UPDATE:2022 02 19	Protocols: Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion	Null cellular	SAMEA12922149	Centre for Developmental Neurobiology, King's College London	ENA first public:2022 02 19\|ENA last update:2022 02 19\|External Id:SAMEA12922149\|INSDC center alias:Centre for Developmental Neurobiology King's College London\|INSDC center name:Centre for Developmental Neurobiology King's College London\|INSDC first public:2022 02 19T00:15:43Z\|INSDC last update:2022 02 19T00:15:43Z\|INSDC status:public\|Submitter Id:E MTAB 11431:Null cellular\|broker name:ArrayExpress\|common name:zebrafish\|genotype:sfpq null / \|growth condition:transwell culture\|organism part:neuron\|sample name:E MTAB 11431:Null cellular	Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	E MTAB 11431:Null cellular p	Null cellular p	Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion	Experimental Factor: genotype:sfpq null / \|Experimental Factor: organism part:neuron	RNA-Seq	TRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina NovaSeq 6000	ERP135383	Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	ENA FIRST PUBLIC:2022 02 19\|ENA LAST UPDATE:2022 02 19\|loader:fastq load.py	15812X8_190227_A00421_38_AH7523DRXX_S51_R1_001.fastq.gz 15812X8_190227_A00421_38_AH7523DRXX_S51_R2_001.fastq.gz	fastq fastq	E MTAB 11431:15812X8 190227 A00421 38 AH7523DRXX S51 R	0:51 1:51	A:739921027;C:667375549;G:663864111;T:764302396;N:14288091	51	51	739921027	667375549	663864111	764302396	14288091	ERX8083448	ERS10521295	ERA8932807	Centre for Developmental Neurobiology, King	Centre for Developmental Neurobiology, King	2	0.90817	0.92909	0.23387	0.24814	0.70088	0.69842	0.51238	0.51267	51	51	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	ribozero	bulk	bulk	bulk	United Kingdom	2022-02-19	Undetermined	Undetermined	Brain	Nervous System
10402	10402	ERR8516968	ERX8083448	ERS10521295	ERP135383	PRJEB50776	Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	E-MTAB-11431	Other	Zebrafish primary neurons either sfpq sibling/control +/+ +/ or null / were cultured in transwell inserts. At DIV2 for each genotype cellular and neurite tissues were separately isolated RNA extracted and total RNAseq performed.	ENA FIRST PUBLIC:2022 02 19\|ENA LAST UPDATE:2022 02 19	Protocols: Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion	Null cellular	SAMEA12922149	Centre for Developmental Neurobiology, King's College London	ENA first public:2022 02 19\|ENA last update:2022 02 19\|External Id:SAMEA12922149\|INSDC center alias:Centre for Developmental Neurobiology King's College London\|INSDC center name:Centre for Developmental Neurobiology King's College London\|INSDC first public:2022 02 19T00:15:43Z\|INSDC last update:2022 02 19T00:15:43Z\|INSDC status:public\|Submitter Id:E MTAB 11431:Null cellular\|broker name:ArrayExpress\|common name:zebrafish\|genotype:sfpq null / \|growth condition:transwell culture\|organism part:neuron\|sample name:E MTAB 11431:Null cellular	Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	E MTAB 11431:Null cellular p	Null cellular p	Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion	Experimental Factor: genotype:sfpq null / \|Experimental Factor: organism part:neuron	RNA-Seq	TRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina NovaSeq 6000	ERP135383	Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	ENA FIRST PUBLIC:2022 02 19\|ENA LAST UPDATE:2022 02 19\|loader:fastq load.py	15812X9_190227_A00421_38_AH7523DRXX_S49_R1_001.fastq.gz 15812X9_190227_A00421_38_AH7523DRXX_S49_R2_001.fastq.gz	fastq fastq	E MTAB 11431:15812X9 190227 A00421 38 AH7523DRXX S49 R	0:51 1:51	A:882831441;C:935213418;G:957033335;T:879085993;N:18444957	51	51	882831441	935213418	957033335	879085993	18444957	ERX8083448	ERS10521295	ERA8932807	Centre for Developmental Neurobiology, King	Centre for Developmental Neurobiology, King	2	0.76218	0.7682	0.18357	0.18521	0.74444	0.74272	0.46714	0.55518	51	51	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	ribozero	bulk	bulk	bulk	United Kingdom	2022-02-19	Undetermined	Undetermined	Brain	Nervous System

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;