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run_metadata

18 rows where experiment.library_selection = "RANDOM", technology = "bulk" and tissue_curation = "Liver"

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tissue_curation_coarse 1

tissue_curation 1

  • Liver · 18 ✖

technology 1

  • bulk · 18 ✖

experiment.platform 1

experiment.library_strategy 1

experiment.library_source 1

experiment.library_selection 1

  • RANDOM · 18 ✖

experiment.library_layout 1

devstage_curation_coarse 1

devstage_curation 1

Link rowid ▼ run.accession experiment.accession sample.accession study.accession bioproject study.title study.alias study.type study.abstract study.attributes study.PMIDs sample.description sample.title sample.alias sample.centername sample.attributes GEOsample.title GEOsample.dataprocessing GEOsample.source GEOsample.treatmentprotocol GEOsample.extractprotocol GEOsample.growthprotocol GEOsample.characteristics GEOsample.accession experiment.title experiment.alias experiment.library_name experiment.design_description experiment.library_construction_protocol experiment.attributes experiment.library_strategy experiment.library_source experiment.library_selection experiment.library_layout experiment.platform experiment.instrument_model experiment.spot_descriptor experiment.study_ref run.title run.attributes run.filename run.semantic_name run.total_bases run.total_spots run.alias run.read_lengths run.base_counts run.r1_length run.r2_length run.r3_length run.r4_length run.Acount run.Ccount run.Gcount run.Tcount run.Ncount run.experiment run.pool_member submission.accession submission.srasource submission.bioprojectsource seqdetective.n_mates seqdetective.mapping_rate.mate1 seqdetective.mapping_rate.mate2 seqdetective.nofeature_rate.mate1 seqdetective.nofeature_rate.mate2 seqdetective.sparsity.mate1 seqdetective.sparsity.mate2 seqdetective.pos_strand_rate.mate1 seqdetective.pos_strand_rate.mate2 seqdetective.readlen.mate1 seqdetective.readlen.mate2 seqdetective.judgement.mate1 seqdetective.judgement.mate2 seqdetective.judgement.reason platform_family instrument_generation read_bias selection_class prep_kit sc_or_bulk tech_class technology tech_variant submission.bioprojectsource.country earliest_date devstage_curation devstage_curation_coarse tissue_curation tissue_curation_coarse
68202 68202 SRR17658919 SRX13826963 SRS11706208 SRP355728 PRJNA798522 Bulk RNA Seq Reveals Toxicity effects of Zinc in the liver of zebra fish PRJNA798522 Other Our results showed environment related zinc contamination could change zebrafish nature behaviors and exhibit heterogeneous toxicity       CLF duplication 3 Ctrl3 liver female 3   strain:AB|dev stage:adult12|sex:female|tissue:liver12|BioSampleModel:Model organism or animal                 CLF duplication 3 Ctrl3 liver female 3 Ctrl3 liver female 3 Ctrl3 liver female 3     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED ILLUMINA Illumina HiSeq 4000   SRP355728     CLF3_1.fq.gz CLF3_2.fq.gz fastq fastq 6712722900.0 22375743.0 CLF3 1.fq.gz 0:150 1:150 A:1783792403;C:1575082041;G:1585315564;T:1767759802;N:773090 150 150     1783792403 1575082041 1585315564 1767759802 773090 SRX13826963 SRS11706208 SRA1358625 Chinese Academy of Fishery Sciences|Freshwater Fisheries Research Center Chinese Academy of Fishery Sciences 2 0.9662 0.96595 0.01762 0.01789 0.8887 0.88828 0.15778 0.15829 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk bulk bulk   China 2022-01-19 Adult Adult Liver Liver and Biliary System
68203 68203 SRR17658920 SRX13826962 SRS11706207 SRP355728 PRJNA798522 Bulk RNA Seq Reveals Toxicity effects of Zinc in the liver of zebra fish PRJNA798522 Other Our results showed environment related zinc contamination could change zebrafish nature behaviors and exhibit heterogeneous toxicity       Z1LF duplication 1 Zincone1 liver female 1   strain:AB|dev stage:adult13|sex:female|tissue:liver13|BioSampleModel:Model organism or animal                 Z1LF duplication 1 Zincone1 liver female 1 Zincone1 liver female 1 Zincone1 liver female 1     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED ILLUMINA Illumina HiSeq 4000   SRP355728     Z1LF1_2.fq.gz Z1LF1_1.fq.gz fastq fastq 6782491200.0 22608304.0 Z1LF1 1.fq.gz 0:150 1:150 A:1789405575;C:1606823947;G:1605287980;T:1780124329;N:849369 150 150     1789405575 1606823947 1605287980 1780124329 849369 SRX13826962 SRS11706207 SRA1358625 Chinese Academy of Fishery Sciences|Freshwater Fisheries Research Center Chinese Academy of Fishery Sciences 2 0.96811 0.9688 0.02477 0.02493 0.88345 0.88316 0.13943 0.13875 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk bulk bulk   China 2022-01-19 Adult Adult Liver Liver and Biliary System
68204 68204 SRR17658921 SRX13826961 SRS11706206 SRP355728 PRJNA798522 Bulk RNA Seq Reveals Toxicity effects of Zinc in the liver of zebra fish PRJNA798522 Other Our results showed environment related zinc contamination could change zebrafish nature behaviors and exhibit heterogeneous toxicity       Z1LF duplication 2 Zincone2 liver female 2   strain:AB|dev stage:adult14|sex:female|tissue:liver14|BioSampleModel:Model organism or animal                 Z1LF duplication 2 Zincone2 liver female 2 Zincone2 liver female 2 Zincone2 liver female 2     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED ILLUMINA Illumina HiSeq 4000   SRP355728     Z1LF2_1.fq.gz Z1LF2_2.fq.gz fastq fastq 6742673100.0 22475577.0 Z1LF2 1.fq.gz 0:150 1:150 A:1792296919;C:1582977645;G:1582194285;T:1784406986;N:797265 150 150     1792296919 1582977645 1582194285 1784406986 797265 SRX13826961 SRS11706206 SRA1358625 Chinese Academy of Fishery Sciences|Freshwater Fisheries Research Center Chinese Academy of Fishery Sciences 2 0.96512 0.96401 0.02268 0.02287 0.8784 0.87868 0.1342 0.13433 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk bulk bulk   China 2022-01-19 Adult Adult Liver Liver and Biliary System
68205 68205 SRR17658922 SRX13826960 SRS11706205 SRP355728 PRJNA798522 Bulk RNA Seq Reveals Toxicity effects of Zinc in the liver of zebra fish PRJNA798522 Other Our results showed environment related zinc contamination could change zebrafish nature behaviors and exhibit heterogeneous toxicity       Z1LF duplication 3 Zincone3 liver female 3   strain:AB|dev stage:adult15|sex:female|tissue:liver15|BioSampleModel:Model organism or animal                 Z1LF duplication 3 Zincone3 liver female 3 Zincone3 liver female 3 Zincone3 liver female 3     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED ILLUMINA Illumina HiSeq 4000   SRP355728     Z1LF3_1.fq.gz Z1LF3_2.fq.gz fastq fastq 6555789600.0 21852632.0 Z1LF3 1.fq.gz 0:150 1:150 A:1740411957;C:1542518108;G:1546876211;T:1725095326;N:887998 150 150     1740411957 1542518108 1546876211 1725095326 887998 SRX13826960 SRS11706205 SRA1358625 Chinese Academy of Fishery Sciences|Freshwater Fisheries Research Center Chinese Academy of Fishery Sciences 2 0.97082 0.96989 0.0152 0.01505 0.88631 0.88724 0.13052 0.12964 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk bulk bulk   China 2022-01-19 Adult Adult Liver Liver and Biliary System
68206 68206 SRR17658923 SRX13826959 SRS11706204 SRP355728 PRJNA798522 Bulk RNA Seq Reveals Toxicity effects of Zinc in the liver of zebra fish PRJNA798522 Other Our results showed environment related zinc contamination could change zebrafish nature behaviors and exhibit heterogeneous toxicity       Z15LF duplication 1 Zincfifteen1 liver female 1   strain:AB|dev stage:adult16|sex:female|tissue:liver16|BioSampleModel:Model organism or animal                 Z15LF duplication 1 Zincfifteen1 liver female 1 Zincfifteen1 liver female 1 Zincfifteen1 liver female 1     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED ILLUMINA Illumina HiSeq 4000   SRP355728     Z15LF1_1.fq.gz Z15LF1_2.fq.gz fastq fastq 7344256200.0 24480854.0 Z15LF1 1.fq.gz 0:150 1:150 A:1953297569;C:1721783315;G:1723246630;T:1944923505;N:1005181 150 150     1953297569 1721783315 1723246630 1944923505 1005181 SRX13826959 SRS11706204 SRA1358625 Chinese Academy of Fishery Sciences|Freshwater Fisheries Research Center Chinese Academy of Fishery Sciences 2 0.96164 0.96146 0.02099 0.02076 0.84435 0.84382 0.18255 0.18129 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk bulk bulk   China 2022-01-19 Adult Adult Liver Liver and Biliary System
68207 68207 SRR17658924 SRX13826958 SRS11706203 SRP355728 PRJNA798522 Bulk RNA Seq Reveals Toxicity effects of Zinc in the liver of zebra fish PRJNA798522 Other Our results showed environment related zinc contamination could change zebrafish nature behaviors and exhibit heterogeneous toxicity       Z15LF duplication 2 Zincfifteen2 liver female 2   strain:AB|dev stage:adult17|sex:female|tissue:liver17|BioSampleModel:Model organism or animal                 Z15LF duplication 2 Zincfifteen2 liver female 2 Zincfifteen2 liver female 2 Zincfifteen2 liver female 2     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED ILLUMINA Illumina HiSeq 4000   SRP355728     Z15LF2_1.fq.gz Z15LF2_2.fq.gz fastq fastq 6523296300.0 21744321.0 Z15LF2 1.fq.gz 0:150 1:150 A:1735374953;C:1531912121;G:1535810321;T:1719318826;N:880079 150 150     1735374953 1531912121 1535810321 1719318826 880079 SRX13826958 SRS11706203 SRA1358625 Chinese Academy of Fishery Sciences|Freshwater Fisheries Research Center Chinese Academy of Fishery Sciences 2 0.959 0.95952 0.01831 0.0182 0.85171 0.85066 0.15523 0.1564 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk bulk bulk   China 2022-01-19 Adult Adult Liver Liver and Biliary System
68208 68208 SRR17658925 SRX13826957 SRS11706202 SRP355728 PRJNA798522 Bulk RNA Seq Reveals Toxicity effects of Zinc in the liver of zebra fish PRJNA798522 Other Our results showed environment related zinc contamination could change zebrafish nature behaviors and exhibit heterogeneous toxicity       Z15LF duplication 3 Zincfifteen3 liver female 3   strain:AB|dev stage:adult18|sex:female|tissue:liver18|BioSampleModel:Model organism or animal                 Z15LF duplication 3 Zincfifteen3 liver female 3 Zincfifteen3 liver female 3 Zincfifteen3 liver female 3     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED ILLUMINA Illumina HiSeq 4000   SRP355728     Z15LF3_1.fq.gz Z15LF3_2.fq.gz fastq fastq 6888482100.0 22961607.0 Z15LF3 1.fq.gz 0:150 1:150 A:1827448725;C:1620084791;G:1622301074;T:1817887819;N:759691 150 150     1827448725 1620084791 1622301074 1817887819 759691 SRX13826957 SRS11706202 SRA1358625 Chinese Academy of Fishery Sciences|Freshwater Fisheries Research Center Chinese Academy of Fishery Sciences 2 0.96506 0.96439 0.01655 0.0167 0.87271 0.87249 0.16667 0.16564 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk bulk bulk   China 2022-01-19 Adult Adult Liver Liver and Biliary System
68209 68209 SRR17658926 SRX13826956 SRS11706201 SRP355728 PRJNA798522 Bulk RNA Seq Reveals Toxicity effects of Zinc in the liver of zebra fish PRJNA798522 Other Our results showed environment related zinc contamination could change zebrafish nature behaviors and exhibit heterogeneous toxicity       CLM duplication 3 Ctrl3 liver male 3   strain:AB|dev stage:adult3|sex:male|tissue:liver3|BioSampleModel:Model organism or animal                 CLM duplication 3 Ctrl3 liver male 3 Ctrl3 liver male 3 Ctrl3 liver male 3     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED ILLUMINA Illumina HiSeq 4000   SRP355728     CLM3_2.fq CLM3_1.fq fastq fastq 6606443100.0 22021477.0 CLM3 1.fq.gz 0:150 1:150 A:1777279847;C:1534028478;G:1528635294;T:1765666817;N:832664 150 150     1777279847 1534028478 1528635294 1765666817 832664 SRX13826956 SRS11706201 SRA1358625 Chinese Academy of Fishery Sciences|Freshwater Fisheries Research Center Chinese Academy of Fishery Sciences 2 0.93213 0.93163 0.06107 0.06084 0.75666 0.75603 0.54196 0.54443 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk bulk bulk   China 2022-01-21 Adult Adult Liver Liver and Biliary System
68210 68210 SRR17658927 SRX13826955 SRS11706200 SRP355728 PRJNA798522 Bulk RNA Seq Reveals Toxicity effects of Zinc in the liver of zebra fish PRJNA798522 Other Our results showed environment related zinc contamination could change zebrafish nature behaviors and exhibit heterogeneous toxicity       Z1LM duplication 1 Zincone1 liver male 1   strain:AB|dev stage:adult4|sex:male|tissue:liver4|BioSampleModel:Model organism or animal                 Z1LM duplication 1 Zincone1 liver male 1 Zincone1 liver male 1 Zincone1 liver male 1     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED ILLUMINA Illumina HiSeq 4000   SRP355728     Z1LM1_1.fq Z1LM1_2.fq fastq fastq 6741311100.0 22471037.0 Z1LM1 1.fq.gz 0:150 1:150 A:1818234893;C:1561053990;G:1554750970;T:1806437004;N:834243 150 150     1818234893 1561053990 1554750970 1806437004 834243 SRX13826955 SRS11706200 SRA1358625 Chinese Academy of Fishery Sciences|Freshwater Fisheries Research Center Chinese Academy of Fishery Sciences 2 0.93276 0.93194 0.05764 0.05747 0.76723 0.76816 0.5389 0.54506 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk bulk bulk   China 2022-01-21 Adult Adult Liver Liver and Biliary System
68211 68211 SRR17658928 SRX13826954 SRS11706199 SRP355728 PRJNA798522 Bulk RNA Seq Reveals Toxicity effects of Zinc in the liver of zebra fish PRJNA798522 Other Our results showed environment related zinc contamination could change zebrafish nature behaviors and exhibit heterogeneous toxicity       Z1LM duplication 2 Zincone2 liver male 2   strain:AB|dev stage:adult5|sex:male|tissue:liver5|BioSampleModel:Model organism or animal                 Z1LM duplication 2 Zincone2 liver male 2 Zincone2 liver male 2 Zincone2 liver male 2     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED ILLUMINA Illumina HiSeq 4000   SRP355728     Z1LM2_1.fq Z1LM2_2.fq fastq fastq 6509324700.0 21697749.0 Z1LM2 1.fq.gz 0:150 1:150 A:1745461645;C:1518249267;G:1510755337;T:1734046233;N:812218 150 150     1745461645 1518249267 1510755337 1734046233 812218 SRX13826954 SRS11706199 SRA1358625 Chinese Academy of Fishery Sciences|Freshwater Fisheries Research Center Chinese Academy of Fishery Sciences 2 0.93476 0.93434 0.05409 0.05354 0.79957 0.79951 0.55566 0.52228 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk bulk bulk   China 2022-01-21 Adult Adult Liver Liver and Biliary System
68212 68212 SRR17658929 SRX13826953 SRS11706198 SRP355728 PRJNA798522 Bulk RNA Seq Reveals Toxicity effects of Zinc in the liver of zebra fish PRJNA798522 Other Our results showed environment related zinc contamination could change zebrafish nature behaviors and exhibit heterogeneous toxicity       Z1LM duplication 3 Zincone3 liver male 3   strain:AB|dev stage:adult6|sex:male|tissue:liver6|BioSampleModel:Model organism or animal                 Z1LM duplication 3 Zincone3 liver male 3 Zincone3 liver male 3 Zincone3 liver male 3     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED ILLUMINA Illumina HiSeq 4000   SRP355728     Z1LM3_1.fq Z1LM3_2.fq fastq fastq 6261575700.0 20871919.0 Z1LM3 1.fq.gz 0:150 1:150 A:1684610294;C:1451805203;G:1450074539;T:1674385111;N:700553 150 150     1684610294 1451805203 1450074539 1674385111 700553 SRX13826953 SRS11706198 SRA1358625 Chinese Academy of Fishery Sciences|Freshwater Fisheries Research Center Chinese Academy of Fishery Sciences 2 0.93933 0.93868 0.04817 0.0481 0.79827 0.79809 0.54124 0.54121 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk bulk bulk   China 2022-01-21 Adult Adult Liver Liver and Biliary System
68213 68213 SRR17658930 SRX13826952 SRS11706197 SRP355728 PRJNA798522 Bulk RNA Seq Reveals Toxicity effects of Zinc in the liver of zebra fish PRJNA798522 Other Our results showed environment related zinc contamination could change zebrafish nature behaviors and exhibit heterogeneous toxicity       Z15LM duplication 1 Zincfifteen1 liver male 1   strain:AB|dev stage:adult7|sex:male|tissue:liver7|BioSampleModel:Model organism or animal                 Z15LM duplication 1 Zincfifteen1 liver male 1 Zincfifteen1 liver male 1 Zincfifteen1 liver male 1     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED ILLUMINA Illumina HiSeq 4000   SRP355728     Z15LM1_2.fq Z15LM1_1.fq fastq fastq 6119041200.0 20396804.0 Z15LM1 1.fq.gz 0:150 1:150 A:1708841791;C:1358255036;G:1356221893;T:1694882465;N:840015 150 150     1708841791 1358255036 1356221893 1694882465 840015 SRX13826952 SRS11706197 SRA1358625 Chinese Academy of Fishery Sciences|Freshwater Fisheries Research Center Chinese Academy of Fishery Sciences 2 0.91348 0.91321 0.09327 0.09367 0.79724 0.79823 0.5389 0.54265 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk bulk bulk   China 2022-01-21 Adult Adult Liver Liver and Biliary System
68214 68214 SRR17658931 SRX13826951 SRS11706196 SRP355728 PRJNA798522 Bulk RNA Seq Reveals Toxicity effects of Zinc in the liver of zebra fish PRJNA798522 Other Our results showed environment related zinc contamination could change zebrafish nature behaviors and exhibit heterogeneous toxicity       Z15LM duplication 2 Zincfifteen2 liver male 2   strain:AB|dev stage:adult8|sex:male|tissue:liver8|BioSampleModel:Model organism or animal                 Z15LM duplication 2 Zincfifteen2 liver male 2 Zincfifteen2 liver male 2 Zincfifteen2 liver male 2     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED ILLUMINA Illumina HiSeq 4000   SRP355728     Z15LM2_1.fq Z15LM2_2.fq fastq fastq 6552076200.0 21840254.0 Z15LM2 1.fq.gz 0:150 1:150 A:1784893310;C:1497246024;G:1496209826;T:1772959594;N:767446 150 150     1784893310 1497246024 1496209826 1772959594 767446 SRX13826951 SRS11706196 SRA1358625 Chinese Academy of Fishery Sciences|Freshwater Fisheries Research Center Chinese Academy of Fishery Sciences 2 0.92103 0.88328 0.06799 0.0651 0.80111 0.80375 0.52001 0.52243 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk bulk bulk   China 2022-01-21 Adult Adult Liver Liver and Biliary System
68215 68215 SRR17658932 SRX13826950 SRS11706195 SRP355728 PRJNA798522 Bulk RNA Seq Reveals Toxicity effects of Zinc in the liver of zebra fish PRJNA798522 Other Our results showed environment related zinc contamination could change zebrafish nature behaviors and exhibit heterogeneous toxicity       Z15LM duplication 3 Zincfifteen3 liver male 3   strain:AB|dev stage:adult9|sex:male|tissue:liver9|BioSampleModel:Model organism or animal                 Z15LM duplication 3 Zincfifteen3 liver male 3 Zincfifteen3 liver male 3 Zincfifteen3 liver male 3     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED ILLUMINA Illumina HiSeq 4000   SRP355728     Z15LM3_2.fq Z15LM3_1.fq fastq fastq 6613075500.0 22043585.0 Z15LM3 1.fq.gz 0:150 1:150 A:1829632707;C:1481626514;G:1478583785;T:1822428644;N:803850 150 150     1829632707 1481626514 1478583785 1822428644 803850 SRX13826950 SRS11706195 SRA1358625 Chinese Academy of Fishery Sciences|Freshwater Fisheries Research Center Chinese Academy of Fishery Sciences 2 0.92586 0.92593 0.07409 0.0739 0.79825 0.79782 0.54697 0.56135 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk bulk bulk   China 2022-01-21 Adult Adult Liver Liver and Biliary System
68216 68216 SRR17658933 SRX13826949 SRS11706194 SRP355728 PRJNA798522 Bulk RNA Seq Reveals Toxicity effects of Zinc in the liver of zebra fish PRJNA798522 Other Our results showed environment related zinc contamination could change zebrafish nature behaviors and exhibit heterogeneous toxicity       CLF duplication 1 Ctrl1 liver female 1   strain:AB|dev stage:adult10|sex:female|tissue:liver10|BioSampleModel:Model organism or animal                 CLF duplication 1 Ctrl1 liver female 1 Ctrl1 liver female 1 Ctrl1 liver female 1     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED ILLUMINA Illumina HiSeq 4000   SRP355728     CLF1_2.fq.gz CLF1_1.fq.gz fastq fastq 6788319600.0 22627732.0 CLF1 1.fq.gz 0:150 1:150 A:1797700930;C:1597670360;G:1600243352;T:1791794495;N:910463 150 150     1797700930 1597670360 1600243352 1791794495 910463 SRX13826949 SRS11706194 SRA1358625 Chinese Academy of Fishery Sciences|Freshwater Fisheries Research Center Chinese Academy of Fishery Sciences 2 0.96283 0.96304 0.01885 0.01848 0.88146 0.8813 0.12716 0.12628 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk bulk bulk   China 2022-01-19 Adult Adult Liver Liver and Biliary System
68217 68217 SRR17658934 SRX13826948 SRS11706193 SRP355728 PRJNA798522 Bulk RNA Seq Reveals Toxicity effects of Zinc in the liver of zebra fish PRJNA798522 Other Our results showed environment related zinc contamination could change zebrafish nature behaviors and exhibit heterogeneous toxicity       CLF duplication 2 Ctrl2 liver female 2   strain:AB|dev stage:adult11|sex:female|tissue:liver11|BioSampleModel:Model organism or animal                 CLF duplication 2 Ctrl2 liver female 2 Ctrl2 liver female 2 Ctrl2 liver female 2     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED ILLUMINA Illumina HiSeq 4000   SRP355728     CLF2_1.fq.gz CLF2_2.fq.gz fastq fastq 6566130000.0 21887100.0 CLF2 1.fq.gz 0:150 1:150 A:1693396647;C:1592638985;G:1596063815;T:1683113075;N:917478 150 150     1693396647 1592638985 1596063815 1683113075 917478 SRX13826948 SRS11706193 SRA1358625 Chinese Academy of Fishery Sciences|Freshwater Fisheries Research Center Chinese Academy of Fishery Sciences 2 0.9676 0.9677 0.03192 0.03218 0.88933 0.88974 0.18018 0.18049 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk bulk bulk   China 2022-01-19 Adult Adult Liver Liver and Biliary System
68218 68218 SRR17658935 SRX13826947 SRS11706192 SRP355728 PRJNA798522 Bulk RNA Seq Reveals Toxicity effects of Zinc in the liver of zebra fish PRJNA798522 Other Our results showed environment related zinc contamination could change zebrafish nature behaviors and exhibit heterogeneous toxicity       CLM duplication 2 Ctrl2 liver male 2   strain:AB|dev stage:adult2|sex:male|tissue:liver2|BioSampleModel:Model organism or animal                 CLM duplication 2 Ctrl2 liver male 2 Ctrl2 liver male 2 Ctrl2 liver male 2     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED ILLUMINA Illumina HiSeq 4000   SRP355728     CLM2_1.fq CLM2_2.fq fastq fastq 6818619600.0 22728732.0 CLM2 1.fq.gz 0:150 1:150 A:1836496438;C:1579813064;G:1581457462;T:1819932440;N:920196 150 150     1836496438 1579813064 1581457462 1819932440 920196 SRX13826947 SRS11706192 SRA1358625 Chinese Academy of Fishery Sciences|Freshwater Fisheries Research Center Chinese Academy of Fishery Sciences 2 0.9345 0.93447 0.05172 0.05186 0.80872 0.8085 0.56518 0.56162 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk bulk bulk   China 2022-01-21 Adult Adult Liver Liver and Biliary System
68219 68219 SRR17658936 SRX13826946 SRS11706191 SRP355728 PRJNA798522 Bulk RNA Seq Reveals Toxicity effects of Zinc in the liver of zebra fish PRJNA798522 Other Our results showed environment related zinc contamination could change zebrafish nature behaviors and exhibit heterogeneous toxicity       CLM duplication 1 Ctrl1 liver male 1   strain:AB|dev stage:adult1|sex:male|tissue:liver1|BioSampleModel:Model organism or animal                 CLM duplication 1 Ctrl1 liver male 1 Ctrl1 liver male 1 Ctrl1 liver male 1     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED ILLUMINA Illumina HiSeq 4000   SRP355728     CLM1_2.fq CLM1_1.fq fastq fastq 6807987300.0 22693291.0 CLM1 1.fq.gz 0:150 1:150 A:1850045257;C:1563059357;G:1561128689;T:1832890808;N:863189 150 150     1850045257 1563059357 1561128689 1832890808 863189 SRX13826946 SRS11706191 SRA1358625 Chinese Academy of Fishery Sciences|Freshwater Fisheries Research Center Chinese Academy of Fishery Sciences 2 0.93418 0.93397 0.05345 0.05329 0.77938 0.77826 0.56496 0.56363 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk bulk bulk   China 2022-01-21 Adult Adult Liver Liver and Biliary System

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;