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run_metadata

17 rows where experiment.library_selection = "RANDOM", experiment.platform = "BGISEQ" and tissue_curation = "Liver"

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tissue_curation_coarse 1

tissue_curation 1

  • Liver · 17 ✖

technology 1

experiment.platform 1

  • BGISEQ · 17 ✖

experiment.library_strategy 1

experiment.library_source 1

experiment.library_selection 1

  • RANDOM · 17 ✖

experiment.library_layout 1

devstage_curation_coarse 1

devstage_curation 1

Link rowid ▼ run.accession experiment.accession sample.accession study.accession bioproject study.title study.alias study.type study.abstract study.attributes study.PMIDs sample.description sample.title sample.alias sample.centername sample.attributes GEOsample.title GEOsample.dataprocessing GEOsample.source GEOsample.treatmentprotocol GEOsample.extractprotocol GEOsample.growthprotocol GEOsample.characteristics GEOsample.accession experiment.title experiment.alias experiment.library_name experiment.design_description experiment.library_construction_protocol experiment.attributes experiment.library_strategy experiment.library_source experiment.library_selection experiment.library_layout experiment.platform experiment.instrument_model experiment.spot_descriptor experiment.study_ref run.title run.attributes run.filename run.semantic_name run.total_bases run.total_spots run.alias run.read_lengths run.base_counts run.r1_length run.r2_length run.r3_length run.r4_length run.Acount run.Ccount run.Gcount run.Tcount run.Ncount run.experiment run.pool_member submission.accession submission.srasource submission.bioprojectsource seqdetective.n_mates seqdetective.mapping_rate.mate1 seqdetective.mapping_rate.mate2 seqdetective.nofeature_rate.mate1 seqdetective.nofeature_rate.mate2 seqdetective.sparsity.mate1 seqdetective.sparsity.mate2 seqdetective.pos_strand_rate.mate1 seqdetective.pos_strand_rate.mate2 seqdetective.readlen.mate1 seqdetective.readlen.mate2 seqdetective.judgement.mate1 seqdetective.judgement.mate2 seqdetective.judgement.reason platform_family instrument_generation read_bias selection_class prep_kit sc_or_bulk tech_class technology tech_variant submission.bioprojectsource.country earliest_date devstage_curation devstage_curation_coarse tissue_curation tissue_curation_coarse
56012 56012 SRR10895920 SRX7564559 SRS6001795 SRP241982 PRJNA599026 Project of basal ray finned fishes PRJNA599026 Other The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.   pubmed:33545088;pubmed:12470943     Zebrafish 001   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Liver|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult CL100103858 L01 5 CL100103858 L01 5       RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP241982     CL100103858_L01_506_2.fq.gz CL100103858_L01_506_1.fq.gz fastq fastq 8894951400.0 88949514.0 CL100103858 L01 506 1.fq.gz 0:100 1:100 A:2342120919;C:2080816976;G:2120799988;T:2335970174;N:15243343 100 100     2342120919 2080816976 2120799988 2335970174 15243343 SRX7564559 SRS6001795 SRA1026516 BGI|BGI-Research BGI 1 0.9583   0.02358   0.88609   0.21491   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-01-15 Adult Adult Liver Liver and Biliary System
56013 56013 SRR10895921 SRX7564558 SRS6001795 SRP241982 PRJNA599026 Project of basal ray finned fishes PRJNA599026 Other The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.   pubmed:33545088;pubmed:12470943     Zebrafish 001   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Liver|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult CL100103858 L01 4 CL100103858 L01 4       RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP241982     CL100103858_L01_502_1.fq.gz CL100103858_L01_502_2.fq.gz fastq fastq 9016276200.0 90162762.0 CL100103858 L01 502 1.fq.gz 0:100 1:100 A:2351547777;C:2123700654;G:2170958690;T:2354500550;N:15568529 100 100     2351547777 2123700654 2170958690 2354500550 15568529 SRX7564558 SRS6001795 SRA1026516 BGI|BGI-Research BGI 1 0.951   0.0278   0.84476   0.28629   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-01-15 Adult Adult Liver Liver and Biliary System
56014 56014 SRR10895922 SRX7564557 SRS6001795 SRP241982 PRJNA599026 Project of basal ray finned fishes PRJNA599026 Other The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.   pubmed:33545088;pubmed:12470943     Zebrafish 001   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Liver|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult CL100103858 L01 3 CL100103858 L01 3       RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP241982     CL100103858_L01_504_2.fq.gz CL100103858_L01_504_1.fq.gz fastq fastq 8533635000.0 85336350.0 CL100103858 L01 504 1.fq.gz 0:100 1:100 A:2252394702;C:1967888849;G:2019361190;T:2279066552;N:14923707 100 100     2252394702 1967888849 2019361190 2279066552 14923707 SRX7564557 SRS6001795 SRA1026516 BGI|BGI-Research BGI 1 0.94212   0.04536   0.80099   0.49769   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-01-15 Adult Adult Liver Liver and Biliary System
56015 56015 SRR10895923 SRX7564556 SRS6001795 SRP241982 PRJNA599026 Project of basal ray finned fishes PRJNA599026 Other The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.   pubmed:33545088;pubmed:12470943     Zebrafish 001   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Liver|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult CL100103858 L01 2 CL100103858 L01 2       RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP241982     CL100103858_L01_503_1.fq.gz CL100103858_L01_503_2.fq.gz fastq fastq 9344789800.0 93447898.0 CL100103858 L01 503 1.fq.gz 0:100 1:100 A:2456933695;C:2188901617;G:2230043511;T:2452921108;N:15989869 100 100     2456933695 2188901617 2230043511 2452921108 15989869 SRX7564556 SRS6001795 SRA1026516 BGI|BGI-Research BGI 1 0.95239   0.01872   0.88026   0.24265   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-01-15 Adult Adult Liver Liver and Biliary System
56016 56016 SRR10895925 SRX7564554 SRS6001795 SRP241982 PRJNA599026 Project of basal ray finned fishes PRJNA599026 Other The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.   pubmed:33545088;pubmed:12470943     Zebrafish 001   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Liver|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult CL100103858 L01 CL100103858 L01       RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP241982     CL100103858_L01_501_1.fq.gz CL100103858_L01_501_2.fq.gz fastq fastq 8939441800.0 89394418.0 CL100103858 L01 501 1.fq.gz 0:100 1:100 A:2371368780;C:2076807210;G:2121148823;T:2354885910;N:15231077 100 100     2371368780 2076807210 2121148823 2354885910 15231077 SRX7564554 SRS6001795 SRA1026516 BGI|BGI-Research BGI 1 0.94776   0.01842   0.88822   0.16376   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-01-15 Adult Adult Liver Liver and Biliary System
63064 63064 SRR13587396 SRX9982091 SRS8153596 SRP303929 PRJNA698005 Danio rerio Raw sequence reads PRJNA698005 Whole Genome Sequencing Danio rerio Raw RNA sequence reads       Model organism or animal sample from Danio rerio The liver of Danio rerio   isolate:river|age:adult|sex:not collected|tissue:liver|BioSampleModel:Model organism or animal                 9ZL 9ZL 9ZL The liver experiment repeat 3 of Gobiocypris rarus     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP303929     9ZL_1.fq.gz 9ZL_2.fq.gz fastq fastq 8277847200.0 55185648.0 9ZL 1.fq.gz 0:150 1:150 A:2225896552;C:1891447719;G:1890393643;T:2270109286;N:0 150 150     2225896552 1891447719 1890393643 2270109286 0 SRX9982091 SRS8153596 SRA1189625 Center for Ecological and Environmental Sciences|Northwestern Polytechnical University Center for Ecological and Environmental Sciences 1 0.92352   0.05455   0.78634   0.53539   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2021-01-30 Adult Adult Liver Liver and Biliary System
63065 63065 SRR13587397 SRX9982090 SRS8153596 SRP303929 PRJNA698005 Danio rerio Raw sequence reads PRJNA698005 Whole Genome Sequencing Danio rerio Raw RNA sequence reads       Model organism or animal sample from Danio rerio The liver of Danio rerio   isolate:river|age:adult|sex:not collected|tissue:liver|BioSampleModel:Model organism or animal                 24ZL 24ZL 24ZL The liver control repeat 3 of Gobiocypris rarus     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP303929     24ZL_1.fq.gz 24ZL_2.fq.gz fastq fastq 8242802100.0 54952014.0 24ZL 1.fq.gz 0:150 1:150 A:2188471818;C:1925051043;G:1912682001;T:2215800017;N:797221 150 150     2188471818 1925051043 1912682001 2215800017 797221 SRX9982090 SRS8153596 SRA1189625 Center for Ecological and Environmental Sciences|Northwestern Polytechnical University Center for Ecological and Environmental Sciences 1 0.96458   0.02693   0.88657   0.1634   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2021-01-30 Adult Adult Liver Liver and Biliary System
63066 63066 SRR13587398 SRX9982089 SRS8153596 SRP303929 PRJNA698005 Danio rerio Raw sequence reads PRJNA698005 Whole Genome Sequencing Danio rerio Raw RNA sequence reads       Model organism or animal sample from Danio rerio The liver of Danio rerio   isolate:river|age:adult|sex:not collected|tissue:liver|BioSampleModel:Model organism or animal                 8ZL 8ZL 8ZL The liver experiment repeat 2 of Gobiocypris rarus     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP303929     8ZL_1.fq.gz 8ZL_2.fq.gz fastq fastq 8320145700.0 55467638.0 8ZL 1.fq.gz 0:150 1:150 A:2269869967;C:1877995864;G:1875902564;T:2295652508;N:724797 150 150     2269869967 1877995864 1875902564 2295652508 724797 SRX9982089 SRS8153596 SRA1189625 Center for Ecological and Environmental Sciences|Northwestern Polytechnical University Center for Ecological and Environmental Sciences 1 0.92304   0.06156   0.76934   0.50603   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2021-01-30 Adult Adult Liver Liver and Biliary System
63067 63067 SRR13587399 SRX9982088 SRS8153596 SRP303929 PRJNA698005 Danio rerio Raw sequence reads PRJNA698005 Whole Genome Sequencing Danio rerio Raw RNA sequence reads       Model organism or animal sample from Danio rerio The liver of Danio rerio   isolate:river|age:adult|sex:not collected|tissue:liver|BioSampleModel:Model organism or animal                 19Z L 19Z L 19Z L The liver control repeat 2 of Gobiocypris rarus     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP303929     19Z_L_1.fq.gz 19Z_L_2.fq.gz fastq fastq 8201244900.0 54674966.0 19Z L 1.fq.gz 0:150 1:150 A:2200752559;C:1868893233;G:1888687787;T:2242402488;N:508833 150 150     2200752559 1868893233 1888687787 2242402488 508833 SRX9982088 SRS8153596 SRA1189625 Center for Ecological and Environmental Sciences|Northwestern Polytechnical University Center for Ecological and Environmental Sciences 1 0.92245   0.05108   0.81537   0.53503   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2021-01-30 Adult Adult Liver Liver and Biliary System
63068 63068 SRR13587400 SRX9982087 SRS8153596 SRP303929 PRJNA698005 Danio rerio Raw sequence reads PRJNA698005 Whole Genome Sequencing Danio rerio Raw RNA sequence reads       Model organism or animal sample from Danio rerio The liver of Danio rerio   isolate:river|age:adult|sex:not collected|tissue:liver|BioSampleModel:Model organism or animal                 10ZL 10ZL 10ZL The liver experiment repeat 1 of Gobiocypris rarus     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP303929     10ZL_1.fq.gz 10ZL_2.fq.gz fastq fastq 8354384700.0 55695898.0 10ZL 1.fq.gz 0:150 1:150 A:2242193475;C:1918649445;G:1915390096;T:2278151684;N:0 150 150     2242193475 1918649445 1915390096 2278151684 0 SRX9982087 SRS8153596 SRA1189625 Center for Ecological and Environmental Sciences|Northwestern Polytechnical University Center for Ecological and Environmental Sciences 1 0.93588   0.03779   0.82467   0.32152   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2021-01-30 Adult Adult Liver Liver and Biliary System
63069 63069 SRR13587401 SRX9982086 SRS8153596 SRP303929 PRJNA698005 Danio rerio Raw sequence reads PRJNA698005 Whole Genome Sequencing Danio rerio Raw RNA sequence reads       Model organism or animal sample from Danio rerio The liver of Danio rerio   isolate:river|age:adult|sex:not collected|tissue:liver|BioSampleModel:Model organism or animal                 10Z L 10Z L 10Z L The liver control repeat 1 of Gobiocypris rarus     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP303929     10Z_L_1.fq.gz 10Z_L_2.fq.gz fastq fastq 8165319000.0 54435460.0 10Z L 1.fq.gz 0:150 1:150 A:2167746213;C:1898899329;G:1895642875;T:2202563231;N:467352 150 150     2167746213 1898899329 1895642875 2202563231 467352 SRX9982086 SRS8153596 SRA1189625 Center for Ecological and Environmental Sciences|Northwestern Polytechnical University Center for Ecological and Environmental Sciences 1 0.92701   0.02566   0.85064   0.19733   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2021-01-30 Adult Adult Liver Liver and Biliary System
65384 65384 SRR15090129 SRX11400004 SRS9443139 SRP327684 PRJNA745176 5 aminolevulinic acid alleviates alpha cypermethrin toxicity in the liver intestine axis in zebrafish PRJNA745176 Other Transcriptome sequencing of liver tissue shows that ALA rescues the differential gene expression on the oxidation reduction heme metabolism and complement activation pathways associated with alpha CP toxicity.         a CP 2   isolate:Zebrafish Wildtype Lines|age:3 month|sex:not collected|tissue:liver|treatment:α cypermethrin α CP single treatment|replicate:biological replicate 2|BioSampleModel:Model organism or animal                 RNA seq of Danio rerio:liver with cypermethrin CP single treatment CP2 CP2 Transcriptome sequencing of liver tissue isolated from Danio rerio with cypermethrin CP single treatment     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ MGISEQ-2000RS   SRP327684     CP2.1.fq.gz CP2.2.fq.gz fastq fastq 6816619800.0 45444132.0 CP2.1.fq.gz 0:150 1:150 A:1891684962;C:1501309861;G:1520270555;T:1903228215;N:126207 150 150     1891684962 1501309861 1520270555 1903228215 126207 SRX11400004 SRS9443139 SRA1257080 China Agricultural University|Department of Applied Chemistry, College of Scienc China Agricultural University 1 0.90339   0.05682   0.74272   0.4834   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2021-07-09 Adult Adult Liver Liver and Biliary System
65385 65385 SRR15090130 SRX11400003 SRS9443138 SRP327684 PRJNA745176 5 aminolevulinic acid alleviates alpha cypermethrin toxicity in the liver intestine axis in zebrafish PRJNA745176 Other Transcriptome sequencing of liver tissue shows that ALA rescues the differential gene expression on the oxidation reduction heme metabolism and complement activation pathways associated with alpha CP toxicity.         a CP 1   isolate:Zebrafish Wildtype Lines|age:3 month|sex:not collected|tissue:liver|treatment:α cypermethrin α CP single treatment|replicate:biological replicate 1|BioSampleModel:Model organism or animal                 RNA seq of Danio rerio:liver with cypermethrin CP single treatment CP1 CP1 Transcriptome sequencing of liver tissue isolated from Danio rerio with cypermethrin CP single treatment     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ MGISEQ-2000RS   SRP327684     CP1.1.fq.gz CP1.2.fq.gz fastq fastq 6801338100.0 45342254.0 CP1.1.fq.gz 0:150 1:150 A:1867686743;C:1516132586;G:1535971522;T:1881429395;N:117854 150 150     1867686743 1516132586 1535971522 1881429395 117854 SRX11400003 SRS9443138 SRA1257080 China Agricultural University|Department of Applied Chemistry, College of Scienc China Agricultural University 1 0.90967   0.04288   0.7433   0.51144   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2021-07-09 Adult Adult Liver Liver and Biliary System
65386 65386 SRR15090131 SRX11400002 SRS9443137 SRP327684 PRJNA745176 5 aminolevulinic acid alleviates alpha cypermethrin toxicity in the liver intestine axis in zebrafish PRJNA745176 Other Transcriptome sequencing of liver tissue shows that ALA rescues the differential gene expression on the oxidation reduction heme metabolism and complement activation pathways associated with alpha CP toxicity.         a CP+ALA 2   isolate:Zebrafish Wildtype Lines|age:3 month|sex:not collected|tissue:liver|treatment:α cypermethrin α CP + 5 aminolevulinic acid ALA co treatment|replicate:biological replicate 2|BioSampleModel:Model organism or animal                 RNA seq of Danio rerio:liver with cypermethrin CP + 5 aminolevulinic acid ALA co treatment CP.ALA2 CP.ALA2 Transcriptome sequencing of liver tissue isolated from Danio rerio with cypermethrin CP + 5 aminolevulinic acid ALA co treatment     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ MGISEQ-2000RS   SRP327684     CP.ALA2.1.fq.gz CP.ALA2.2.fq.gz fastq fastq 6826417800.0 45509452.0 CP.ALA2.1.fq.gz 0:150 1:150 A:1880324963;C:1518162498;G:1528544942;T:1899329442;N:55955 150 150     1880324963 1518162498 1528544942 1899329442 55955 SRX11400002 SRS9443137 SRA1257080 China Agricultural University|Department of Applied Chemistry, College of Scienc China Agricultural University 1 0.90511   0.03383   0.75225   0.50503   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2021-07-09 Adult Adult Liver Liver and Biliary System
65387 65387 SRR15090132 SRX11400001 SRS9443136 SRP327684 PRJNA745176 5 aminolevulinic acid alleviates alpha cypermethrin toxicity in the liver intestine axis in zebrafish PRJNA745176 Other Transcriptome sequencing of liver tissue shows that ALA rescues the differential gene expression on the oxidation reduction heme metabolism and complement activation pathways associated with alpha CP toxicity.         a CP+ALA 1   isolate:Zebrafish Wildtype Lines|age:3 month|sex:not collected|tissue:liver|treatment:α cypermethrin α CP + 5 aminolevulinic acid ALA co treatment|replicate:biological replicate 1|BioSampleModel:Model organism or animal                 RNA seq of Danio rerio:liver with cypermethrin CP + 5 aminolevulinic acid ALA co treatment CP.ALA1 CP.ALA1 Transcriptome sequencing of liver tissue isolated from Danio rerio with cypermethrin CP + 5 aminolevulinic acid ALA co treatment     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ MGISEQ-2000RS   SRP327684     CP.ALA1.1.fq.gz CP.ALA1.2.fq.gz fastq fastq 6787614000.0 45250760.0 CP.ALA1.1.fq.gz 0:150 1:150 A:1883241447;C:1496341973;G:1511662052;T:1896312396;N:56132 150 150     1883241447 1496341973 1511662052 1896312396 56132 SRX11400001 SRS9443136 SRA1257080 China Agricultural University|Department of Applied Chemistry, College of Scienc China Agricultural University 1 0.89741   0.03801   0.74943   0.50457   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2021-07-09 Adult Adult Liver Liver and Biliary System
65388 65388 SRR15090133 SRX11400000 SRS9443135 SRP327684 PRJNA745176 5 aminolevulinic acid alleviates alpha cypermethrin toxicity in the liver intestine axis in zebrafish PRJNA745176 Other Transcriptome sequencing of liver tissue shows that ALA rescues the differential gene expression on the oxidation reduction heme metabolism and complement activation pathways associated with alpha CP toxicity.         Control 2   isolate:Zebrafish Wildtype Lines|age:3 month|sex:not collected|tissue:liver|treatment:Control treatment|replicate:biological replicate 2|BioSampleModel:Model organism or animal                 RNA seq of Danio rerio:liver with Control treatment CK 2 CK 2 Transcriptome sequencing of liver tissue isolated from Danio rerio with untreatment     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ MGISEQ-2000RS   SRP327684     CK2.1.fq.gz CK2.2.fq.gz fastq fastq 4937307600.0 32915384.0 CK2.1.fq.gz 0:150 1:150 A:1353639761;C:1104257332;G:1111219864;T:1368151010;N:39633 150 150     1353639761 1104257332 1111219864 1368151010 39633 SRX11400000 SRS9443135 SRA1257080 China Agricultural University|Department of Applied Chemistry, College of Scienc China Agricultural University 1 0.90129   0.03238   0.75406   0.49273   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2021-07-09 Adult Adult Liver Liver and Biliary System
65389 65389 SRR15090134 SRX11399999 SRS9443134 SRP327684 PRJNA745176 5 aminolevulinic acid alleviates alpha cypermethrin toxicity in the liver intestine axis in zebrafish PRJNA745176 Other Transcriptome sequencing of liver tissue shows that ALA rescues the differential gene expression on the oxidation reduction heme metabolism and complement activation pathways associated with alpha CP toxicity.         Control 1   isolate:Zebrafish Wildtype Lines|age:3 month|sex:not collected|tissue:liver|treatment:Control treatment|replicate:biological replicate 1|BioSampleModel:Model organism or animal                 RNA seq of Danio rerio:liver with Control treatment CK 1 CK 1 Transcriptome sequencing of liver tissue isolated from Danio rerio with untreatment     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ MGISEQ-2000RS   SRP327684     CK1.1.fq.gz CK1.2.fq.gz fastq fastq 5002504200.0 33350028.0 CK1.1.fq.gz 0:150 1:150 A:1371483028;C:1118930644;G:1125887754;T:1386162333;N:40441 150 150     1371483028 1118930644 1125887754 1386162333 40441 SRX11399999 SRS9443134 SRA1257080 China Agricultural University|Department of Applied Chemistry, College of Scienc China Agricultural University 1 0.90179   0.03287   0.75349   0.49689   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2021-07-09 Adult Adult Liver Liver and Biliary System

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;