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run_metadata

94 rows where experiment.library_selection = "RANDOM", experiment.library_source = "TRANSCRIPTOMIC" and experiment.platform = "BGISEQ"

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tissue_curation >10

devstage_curation_coarse 3

devstage_curation 3

experiment.library_layout 2

technology 1

experiment.platform 1

  • BGISEQ · 94 ✖

experiment.library_strategy 1

experiment.library_source 1

  • TRANSCRIPTOMIC · 94 ✖

experiment.library_selection 1

  • RANDOM · 94 ✖
Link rowid ▼ run.accession experiment.accession sample.accession study.accession bioproject study.title study.alias study.type study.abstract study.attributes study.PMIDs sample.description sample.title sample.alias sample.centername sample.attributes GEOsample.title GEOsample.dataprocessing GEOsample.source GEOsample.treatmentprotocol GEOsample.extractprotocol GEOsample.growthprotocol GEOsample.characteristics GEOsample.accession experiment.title experiment.alias experiment.library_name experiment.design_description experiment.library_construction_protocol experiment.attributes experiment.library_strategy experiment.library_source experiment.library_selection experiment.library_layout experiment.platform experiment.instrument_model experiment.spot_descriptor experiment.study_ref run.title run.attributes run.filename run.semantic_name run.total_bases run.total_spots run.alias run.read_lengths run.base_counts run.r1_length run.r2_length run.r3_length run.r4_length run.Acount run.Ccount run.Gcount run.Tcount run.Ncount run.experiment run.pool_member submission.accession submission.srasource submission.bioprojectsource seqdetective.n_mates seqdetective.mapping_rate.mate1 seqdetective.mapping_rate.mate2 seqdetective.nofeature_rate.mate1 seqdetective.nofeature_rate.mate2 seqdetective.sparsity.mate1 seqdetective.sparsity.mate2 seqdetective.pos_strand_rate.mate1 seqdetective.pos_strand_rate.mate2 seqdetective.readlen.mate1 seqdetective.readlen.mate2 seqdetective.judgement.mate1 seqdetective.judgement.mate2 seqdetective.judgement.reason platform_family instrument_generation read_bias selection_class prep_kit sc_or_bulk tech_class technology tech_variant submission.bioprojectsource.country earliest_date devstage_curation devstage_curation_coarse tissue_curation tissue_curation_coarse
52242 52242 SRR9047069 SRX5823596 SRS4751717 SRP198207 PRJNA542583 Migrasomes provide regional cues for organ morphogenesis during zebrafish gastrulation PRJNA542583 Other Our study shows that migrasomes are signaling organelles which provide specific biochemical information to coordinate organ morphogenesis.       stdMO PBS stdMO PBS   strain:Tu|isolate:primary cell|dev stage:gastrulation|sex:not determined|tissue:embryo|collection date:2016 11 13|genotype:wild type|geo loc name:China: Beijing|sample type:embryos|BioSampleModel:Model organism or animal                 tspan RNA seq uniprot uniprot RNA seq     RNA-Seq TRANSCRIPTOMIC RANDOM SINGLE BGISEQ BGISEQ-500   SRP198207     161214_I137_FCHF7TTBBXX_L2_WHFISclfRAAARAAPEI-203_1.fq.gz fastq 633650654.0 12931646.0 161214 I137 FCHF7TTBBXX L2 WHFISclfRAAARAAPEI 203 1.fq.gz 0:49 1:0 A:165787428;C:152969494;G:145599180;T:169168973;N:125579 49 0     165787428 152969494 145599180 169168973 125579 SRX5823596 SRS4751717 SRA885639 Tsinghua University|School of Life Sciences Tsinghua University 1 0.93004   0.09559   0.753   0.47488   49   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2019-05-30 Gastrula Embryo Embryo Imprecise All anatomical structures
55972 55972 SRR10895875 SRX7564604 SRS6001805 SRP241982 PRJNA599026 Project of basal ray finned fishes PRJNA599026 Other The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.   pubmed:33545088;pubmed:12470943     Zebrafish 009   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Spinal cord|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult CL100103178 L01 9 CL100103178 L01 9       RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP241982     CL100103178_L01_567_1.fq.gz CL100103178_L01_567_2.fq.gz fastq fastq 7926659000.0 79266590.0 CL100103178 L01 567 1.fq.gz 0:100 1:100 A:2177233520;C:1750763335;G:1793690428;T:2195598681;N:9373036 100 100     2177233520 1750763335 1793690428 2195598681 9373036 SRX7564604 SRS6001805 SRA1026516 BGI|BGI-Research BGI 1 0.90731   0.11069   0.70548   0.53521   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-01-15 Adult Adult Spinal Cord Nervous System
55973 55973 SRR10895876 SRX7564603 SRS6001805 SRP241982 PRJNA599026 Project of basal ray finned fishes PRJNA599026 Other The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.   pubmed:33545088;pubmed:12470943     Zebrafish 009   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Spinal cord|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult CL100103178 L01 8 CL100103178 L01 8       RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP241982     CL100103178_L01_563_1.fq.gz CL100103178_L01_563_2.fq.gz fastq fastq 9981278800.0 99812788.0 CL100103178 L01 563 1.fq.gz 0:100 1:100 A:2753622693;C:2192952746;G:2243702494;T:2779006876;N:11993991 100 100     2753622693 2192952746 2243702494 2779006876 11993991 SRX7564603 SRS6001805 SRA1026516 BGI|BGI-Research BGI 1 0.90715   0.11372   0.71467   0.5089   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-01-15 Adult Adult Spinal Cord Nervous System
55974 55974 SRR10895877 SRX7564602 SRS6001805 SRP241982 PRJNA599026 Project of basal ray finned fishes PRJNA599026 Other The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.   pubmed:33545088;pubmed:12470943     Zebrafish 009   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Spinal cord|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult CL100103178 L01 7 CL100103178 L01 7       RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP241982     CL100103178_L01_562_1.fq.gz CL100103178_L01_562_2.fq.gz fastq fastq 8857552800.0 88575528.0 CL100103178 L01 562 1.fq.gz 0:100 1:100 A:2418167382;C:1969456035;G:2015821568;T:2442764114;N:11343701 100 100     2418167382 1969456035 2015821568 2442764114 11343701 SRX7564602 SRS6001805 SRA1026516 BGI|BGI-Research BGI 1 0.90895   0.10978   0.71336   0.50272   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-01-15 Adult Adult Spinal Cord Nervous System
55975 55975 SRR10895878 SRX7564601 SRS6001805 SRP241982 PRJNA599026 Project of basal ray finned fishes PRJNA599026 Other The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.   pubmed:33545088;pubmed:12470943     Zebrafish 009   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Spinal cord|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult CL100103178 L01 6 CL100103178 L01 6       RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP241982     CL100103178_L01_564_1.fq.gz CL100103178_L01_564_2.fq.gz fastq fastq 7468499200.0 74684992.0 CL100103178 L01 564 1.fq.gz 0:100 1:100 A:2052720985;C:1649448011;G:1690698471;T:2068073830;N:7557903 100 100     2052720985 1649448011 1690698471 2068073830 7557903 SRX7564601 SRS6001805 SRA1026516 BGI|BGI-Research BGI 1 0.90905   0.10883   0.69578   0.54193   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-01-15 Adult Adult Spinal Cord Nervous System
55976 55976 SRR10895881 SRX7564598 SRS6001805 SRP241982 PRJNA599026 Project of basal ray finned fishes PRJNA599026 Other The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.   pubmed:33545088;pubmed:12470943     Zebrafish 009   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Spinal cord|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult CL100103178 L01 5 CL100103178 L01 5       RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP241982     CL100103178_L01_561_1.fq.gz CL100103178_L01_561_2.fq.gz fastq fastq 9173572800.0 91735728.0 CL100103178 L01 561 1.fq.gz 0:100 1:100 A:2527132650;C:2020739240;G:2066720461;T:2548747865;N:10232584 100 100     2527132650 2020739240 2066720461 2548747865 10232584 SRX7564598 SRS6001805 SRA1026516 BGI|BGI-Research BGI 1 0.91539   0.11063   0.71427   0.48162   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-01-15 Adult Adult Spinal Cord Nervous System
55977 55977 SRR10895882 SRX7564597 SRS6001804 SRP241982 PRJNA599026 Project of basal ray finned fishes PRJNA599026 Other The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.   pubmed:33545088;pubmed:12470943     Zebrafish 008   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Heart|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult CL100101924 L01 10 CL100101924 L01 10       RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP241982     CL100101924_L01_545_2.fq.gz CL100101924_L01_545_1.fq.gz fastq fastq 9098943800.0 90989438.0 CL100101924 L01 545 1.fq.gz 0:100 1:100 A:2494855042;C:2016596912;G:2050775890;T:2525488540;N:11227416 100 100     2494855042 2016596912 2050775890 2525488540 11227416 SRX7564597 SRS6001804 SRA1026516 BGI|BGI-Research BGI 1 0.93737   0.07867   0.76061   0.53141   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-01-15 Adult Adult Heart Cardiovascular System
55978 55978 SRR10895883 SRX7564596 SRS6001804 SRP241982 PRJNA599026 Project of basal ray finned fishes PRJNA599026 Other The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.   pubmed:33545088;pubmed:12470943     Zebrafish 008   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Heart|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult CL100103178 L01 4 CL100103178 L01 4       RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP241982     CL100103178_L01_570_2.fq.gz CL100103178_L01_570_1.fq.gz fastq fastq 6098551000.0 60985510.0 CL100103178 L01 570 1.fq.gz 0:100 1:100 A:1665824009;C:1362170830;G:1387665851;T:1676412762;N:6477548 100 100     1665824009 1362170830 1387665851 1676412762 6477548 SRX7564596 SRS6001804 SRA1026516 BGI|BGI-Research BGI 1 0.9281   0.07522   0.77715   0.52597   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-01-15 Adult Adult Heart Cardiovascular System
55979 55979 SRR10895884 SRX7564595 SRS6001804 SRP241982 PRJNA599026 Project of basal ray finned fishes PRJNA599026 Other The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.   pubmed:33545088;pubmed:12470943     Zebrafish 008   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Heart|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult CL100103178 L01 3 CL100103178 L01 3       RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP241982     CL100103178_L01_568_2.fq.gz CL100103178_L01_568_1.fq.gz fastq fastq 7674097800.0 76740978.0 CL100103178 L01 568 1.fq.gz 0:100 1:100 A:2066126344;C:1741642506;G:1775116741;T:2081782365;N:9429844 100 100     2066126344 1741642506 1775116741 2081782365 9429844 SRX7564595 SRS6001804 SRA1026516 BGI|BGI-Research BGI 1 0.92233   0.07056   0.76029   0.55672   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-01-15 Adult Adult Heart Cardiovascular System
55980 55980 SRR10895885 SRX7564594 SRS6001804 SRP241982 PRJNA599026 Project of basal ray finned fishes PRJNA599026 Other The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.   pubmed:33545088;pubmed:12470943     Zebrafish 008   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Heart|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult CL100103178 L01 2 CL100103178 L01 2       RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP241982     CL100103178_L01_569_1.fq.gz CL100103178_L01_569_2.fq.gz fastq fastq 10407446000.0 104074460.0 CL100103178 L01 569 1.fq.gz 0:100 1:100 A:2806156548;C:2359148121;G:2410612409;T:2819342794;N:12186128 100 100     2806156548 2359148121 2410612409 2819342794 12186128 SRX7564594 SRS6001804 SRA1026516 BGI|BGI-Research BGI 1 0.9202   0.06921   0.77384   0.56843   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-01-15 Adult Adult Heart Cardiovascular System
55981 55981 SRR10895886 SRX7564593 SRS6001804 SRP241982 PRJNA599026 Project of basal ray finned fishes PRJNA599026 Other The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.   pubmed:33545088;pubmed:12470943     Zebrafish 008   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Heart|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult CL100103178 L01 CL100103178 L01       RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP241982     CL100103178_L01_571_2.fq.gz CL100103178_L01_571_1.fq.gz fastq fastq 8778390800.0 87783908.0 CL100103178 L01 571 1.fq.gz 0:100 1:100 A:2364575734;C:1991773326;G:2031934839;T:2379995507;N:10111394 100 100     2364575734 1991773326 2031934839 2379995507 10111394 SRX7564593 SRS6001804 SRA1026516 BGI|BGI-Research BGI 1 0.92192   0.08454   0.7544   0.53692   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-01-15 Adult Adult Heart Cardiovascular System
55982 55982 SRR10895887 SRX7564592 SRS6001802 SRP241982 PRJNA599026 Project of basal ray finned fishes PRJNA599026 Other The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.   pubmed:33545088;pubmed:12470943     Zebrafish 007   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Skin|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult CL100101924 L01 9 CL100101924 L01 9       RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP241982     CL100101924_L01_550_1.fq.gz CL100101924_L01_550_2.fq.gz fastq fastq 8780226200.0 87802262.0 CL100101924 L01 550 1.fq.gz 0:100 1:100 A:2363664067;C:1983383192;G:2025795704;T:2396528723;N:10854514 100 100     2363664067 1983383192 2025795704 2396528723 10854514 SRX7564592 SRS6001802 SRA1026516 BGI|BGI-Research BGI 1 0.92686   0.10085   0.70903   0.51488   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-01-15 Adult Adult Skin Surface Structure
55983 55983 SRR10895888 SRX7564591 SRS6001802 SRP241982 PRJNA599026 Project of basal ray finned fishes PRJNA599026 Other The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.   pubmed:33545088;pubmed:12470943     Zebrafish 007   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Skin|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult CL100101924 L01 8 CL100101924 L01 8       RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP241982     CL100101924_L01_549_2.fq.gz CL100101924_L01_549_1.fq.gz fastq fastq 9805051200.0 98050512.0 CL100101924 L01 549 1.fq.gz 0:100 1:100 A:2663706429;C:2193838939;G:2241619945;T:2693859046;N:12026841 100 100     2663706429 2193838939 2241619945 2693859046 12026841 SRX7564591 SRS6001802 SRA1026516 BGI|BGI-Research BGI 1 0.92652   0.0983   0.71043   0.53401   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-01-15 Adult Adult Skin Surface Structure
55984 55984 SRR10895889 SRX7564590 SRS6001802 SRP241982 PRJNA599026 Project of basal ray finned fishes PRJNA599026 Other The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.   pubmed:33545088;pubmed:12470943     Zebrafish 007   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Skin|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult CL100101924 L01 7 CL100101924 L01 7       RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP241982     CL100101924_L01_547_1.fq.gz CL100101924_L01_547_2.fq.gz fastq fastq 9137587600.0 91375876.0 CL100101924 L01 547 1.fq.gz 0:100 1:100 A:2471506783;C:2052808667;G:2096159921;T:2505897469;N:11214760 100 100     2471506783 2052808667 2096159921 2505897469 11214760 SRX7564590 SRS6001802 SRA1026516 BGI|BGI-Research BGI 1 0.93126   0.09864   0.70613   0.51947   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-01-15 Adult Adult Skin Surface Structure
55985 55985 SRR10895890 SRX7564589 SRS6001802 SRP241982 PRJNA599026 Project of basal ray finned fishes PRJNA599026 Other The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.   pubmed:33545088;pubmed:12470943     Zebrafish 007   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Skin|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult CL100101924 L01 6 CL100101924 L01 6       RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP241982     CL100101924_L01_551_1.fq.gz CL100101924_L01_551_2.fq.gz fastq fastq 7665129600.0 76651296.0 CL100101924 L01 551 1.fq.gz 0:100 1:100 A:2062939973;C:1731950056;G:1768675635;T:2092110510;N:9453426 100 100     2062939973 1731950056 1768675635 2092110510 9453426 SRX7564589 SRS6001802 SRA1026516 BGI|BGI-Research BGI 1 0.93022   0.10662   0.70512   0.50773   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-01-15 Adult Adult Skin Surface Structure
55986 55986 SRR10895892 SRX7564587 SRS6001802 SRP241982 PRJNA599026 Project of basal ray finned fishes PRJNA599026 Other The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.   pubmed:33545088;pubmed:12470943     Zebrafish 007   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Skin|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult CL100101924 L01 5 CL100101924 L01 5       RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP241982     CL100101924_L01_548_1.fq.gz CL100101924_L01_548_2.fq.gz fastq fastq 6527814200.0 65278142.0 CL100101924 L01 548 1.fq.gz 0:100 1:100 A:1748761735;C:1483522306;G:1516468410;T:1771028617;N:8033132 100 100     1748761735 1483522306 1516468410 1771028617 8033132 SRX7564587 SRS6001802 SRA1026516 BGI|BGI-Research BGI 1 0.93149   0.09371   0.70542   0.51664   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-01-15 Adult Adult Skin Surface Structure
55987 55987 SRR10895893 SRX7564586 SRS6001801 SRP241982 PRJNA599026 Project of basal ray finned fishes PRJNA599026 Other The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.   pubmed:33545088;pubmed:12470943     Zebrafish 006   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Muscle|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult CL100103858 L02 11 CL100103858 L02 11       RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP241982     CL100103858_L02_517_1.fq.gz CL100103858_L02_517_2.fq.gz fastq fastq 8506603800.0 85066038.0 CL100103858 L02 517 1.fq.gz 0:100 1:100 A:2292801692;C:1923556878;G:1974694874;T:2303714790;N:11835566 100 100     2292801692 1923556878 1974694874 2303714790 11835566 SRX7564586 SRS6001801 SRA1026516 BGI|BGI-Research BGI 1 0.96138   0.03993   0.82976   0.64498   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-01-15 Adult Adult Muscle Muscular System
55988 55988 SRR10895894 SRX7564585 SRS6001801 SRP241982 PRJNA599026 Project of basal ray finned fishes PRJNA599026 Other The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.   pubmed:33545088;pubmed:12470943     Zebrafish 006   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Muscle|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult CL100103858 L01 13 CL100103858 L01 13       RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP241982     CL100103858_L01_514_2.fq.gz CL100103858_L01_514_1.fq.gz fastq fastq 7391075800.0 73910758.0 CL100103858 L01 514 1.fq.gz 0:100 1:100 A:1927614555;C:1731326620;G:1786947018;T:1932511997;N:12675610 100 100     1927614555 1731326620 1786947018 1932511997 12675610 SRX7564585 SRS6001801 SRA1026516 BGI|BGI-Research BGI 1 0.93702   0.04631   0.77985   0.53119   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-01-15 Adult Adult Muscle Muscular System
55989 55989 SRR10895895 SRX7564584 SRS6001801 SRP241982 PRJNA599026 Project of basal ray finned fishes PRJNA599026 Other The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.   pubmed:33545088;pubmed:12470943     Zebrafish 006   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Muscle|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult CL100103858 L01 12 CL100103858 L01 12       RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP241982     CL100103858_L01_515_1.fq.gz CL100103858_L01_515_2.fq.gz fastq fastq 8374057600.0 83740576.0 CL100103858 L01 515 1.fq.gz 0:100 1:100 A:2230542787;C:1917435448;G:1965561976;T:2246062032;N:14455357 100 100     2230542787 1917435448 1965561976 2246062032 14455357 SRX7564584 SRS6001801 SRA1026516 BGI|BGI-Research BGI 1 0.94954   0.04127   0.78589   0.61201   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-01-15 Adult Adult Muscle Muscular System
55990 55990 SRR10895896 SRX7564583 SRS6001801 SRP241982 PRJNA599026 Project of basal ray finned fishes PRJNA599026 Other The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.   pubmed:33545088;pubmed:12470943     Zebrafish 006   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Muscle|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult CL100103858 L01 11 CL100103858 L01 11       RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP241982     CL100103858_L01_516_1.fq.gz CL100103858_L01_516_2.fq.gz fastq fastq 7909115600.0 79091156.0 CL100103858 L01 516 1.fq.gz 0:100 1:100 A:2073091675;C:1842299453;G:1898493755;T:2081930446;N:13300271 100 100     2073091675 1842299453 1898493755 2081930446 13300271 SRX7564583 SRS6001801 SRA1026516 BGI|BGI-Research BGI 1 0.95755   0.02912   0.83483   0.61158   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-01-15 Adult Adult Muscle Muscular System
55991 55991 SRR10895897 SRX7564582 SRS6001801 SRP241982 PRJNA599026 Project of basal ray finned fishes PRJNA599026 Other The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.   pubmed:33545088;pubmed:12470943     Zebrafish 006   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Muscle|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult CL100103858 L02 10 CL100103858 L02 10       RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP241982     CL100103858_L02_518_1.fq.gz CL100103858_L02_518_2.fq.gz fastq fastq 9462489200.0 94624892.0 CL100103858 L02 518 1.fq.gz 0:100 1:100 A:2473166981;C:2213506014;G:2273238020;T:2489490295;N:13087890 100 100     2473166981 2213506014 2273238020 2489490295 13087890 SRX7564582 SRS6001801 SRA1026516 BGI|BGI-Research BGI 1 0.95581   0.04117   0.79784   0.53207   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-01-15 Adult Adult Muscle Muscular System
55992 55992 SRR10895898 SRX7564581 SRS6001800 SRP241982 PRJNA599026 Project of basal ray finned fishes PRJNA599026 Other The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.   pubmed:33545088;pubmed:12470943     Zebrafish 005   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Brain|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult CL100103858 L01 10 CL100103858 L01 10       RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP241982     CL100103858_L01_513_1.fq.gz CL100103858_L01_513_2.fq.gz fastq fastq 9129585000.0 91295850.0 CL100103858 L01 513 1.fq.gz 0:100 1:100 A:2497450580;C:2015129450;G:2071393661;T:2529809771;N:15801538 100 100     2497450580 2015129450 2071393661 2529809771 15801538 SRX7564581 SRS6001800 SRA1026516 BGI|BGI-Research BGI 1 0.93396   0.13   0.71431   0.54518   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-01-15 Adult Adult Brain Nervous System
55993 55993 SRR10895899 SRX7564580 SRS6001800 SRP241982 PRJNA599026 Project of basal ray finned fishes PRJNA599026 Other The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.   pubmed:33545088;pubmed:12470943     Zebrafish 005   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Brain|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult CL100103858 L01 9 CL100103858 L01 9       RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP241982     CL100103858_L01_509_2.fq.gz CL100103858_L01_509_1.fq.gz fastq fastq 9063446600.0 90634466.0 CL100103858 L01 509 1.fq.gz 0:100 1:100 A:2470522817;C:2005905195;G:2066552125;T:2504876588;N:15589875 100 100     2470522817 2005905195 2066552125 2504876588 15589875 SRX7564580 SRS6001800 SRA1026516 BGI|BGI-Research BGI 1 0.9334   0.13676   0.71614   0.54289   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-01-15 Adult Adult Brain Nervous System
55994 55994 SRR10895900 SRX7564579 SRS6001800 SRP241982 PRJNA599026 Project of basal ray finned fishes PRJNA599026 Other The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.   pubmed:33545088;pubmed:12470943     Zebrafish 005   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Brain|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult CL100103858 L01 8 CL100103858 L01 8       RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP241982     CL100103858_L01_510_1.fq.gz CL100103858_L01_510_2.fq.gz fastq fastq 10414313800.0 104143138.0 CL100103858 L01 510 1.fq.gz 0:100 1:100 A:2858166440;C:2289999240;G:2356174514;T:2892047112;N:17926494 100 100     2858166440 2289999240 2356174514 2892047112 17926494 SRX7564579 SRS6001800 SRA1026516 BGI|BGI-Research BGI 1 0.93036   0.13448   0.71045   0.53846   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-01-15 Adult Adult Brain Nervous System
55995 55995 SRR10895901 SRX7564578 SRS6001800 SRP241982 PRJNA599026 Project of basal ray finned fishes PRJNA599026 Other The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.   pubmed:33545088;pubmed:12470943     Zebrafish 005   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Brain|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult CL100103858 L01 7 CL100103858 L01 7       RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP241982     CL100103858_L01_511_2.fq.gz CL100103858_L01_511_1.fq.gz fastq fastq 10057553400.0 100575534.0 CL100103858 L01 511 1.fq.gz 0:100 1:100 A:2762495630;C:2212266487;G:2274060113;T:2791456239;N:17274931 100 100     2762495630 2212266487 2274060113 2791456239 17274931 SRX7564578 SRS6001800 SRA1026516 BGI|BGI-Research BGI 1 0.93578   0.11695   0.72005   0.51093   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-01-15 Adult Adult Brain Nervous System
55996 55996 SRR10895903 SRX7564576 SRS6001800 SRP241982 PRJNA599026 Project of basal ray finned fishes PRJNA599026 Other The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.   pubmed:33545088;pubmed:12470943     Zebrafish 005   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Brain|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult CL100103858 L01 6 CL100103858 L01 6       RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP241982     CL100103858_L01_512_1.fq.gz CL100103858_L01_512_2.fq.gz fastq fastq 8575207600.0 85752076.0 CL100103858 L01 512 1.fq.gz 0:100 1:100 A:2340755177;C:1898089765;G:1951995517;T:2369794410;N:14572731 100 100     2340755177 1898089765 1951995517 2369794410 14572731 SRX7564576 SRS6001800 SRA1026516 BGI|BGI-Research BGI 1 0.93429   0.12481   0.71384   0.52278   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-01-15 Adult Adult Brain Nervous System
55997 55997 SRR10895904 SRX7564575 SRS6001799 SRP241982 PRJNA599026 Project of basal ray finned fishes PRJNA599026 Other The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.   pubmed:33545088;pubmed:12470943     Zebrafish 004   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Swim bladder|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult CL100103858 L02 9 CL100103858 L02 9       RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP241982     CL100103858_L02_527_2.fq.gz CL100103858_L02_527_1.fq.gz fastq fastq 9389292400.0 93892924.0 CL100103858 L02 527 1.fq.gz 0:100 1:100 A:2535177343;C:2107498353;G:2159172216;T:2574271698;N:13172790 100 100     2535177343 2107498353 2159172216 2574271698 13172790 SRX7564575 SRS6001799 SRA1026516 BGI|BGI-Research BGI 1 0.94054   0.10829   0.70818   0.51214   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-01-15 Adult Adult Swim Bladder Swim Bladder
55998 55998 SRR10895905 SRX7564574 SRS6001799 SRP241982 PRJNA599026 Project of basal ray finned fishes PRJNA599026 Other The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.   pubmed:33545088;pubmed:12470943     Zebrafish 004   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Swim bladder|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult CL100103178 L02 9 CL100103178 L02 9       RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP241982     CL100103178_L02_580_2.fq.gz CL100103178_L02_580_1.fq.gz fastq fastq 9451878800.0 94518788.0 CL100103178 L02 580 1.fq.gz 0:100 1:100 A:2482432185;C:2200816673;G:2254475373;T:2504225593;N:9928976 100 100     2482432185 2200816673 2254475373 2504225593 9928976 SRX7564574 SRS6001799 SRA1026516 BGI|BGI-Research BGI 1 0.91363   0.08854   0.67399   0.52315   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-01-15 Adult Adult Swim Bladder Swim Bladder
55999 55999 SRR10895906 SRX7564573 SRS6001799 SRP241982 PRJNA599026 Project of basal ray finned fishes PRJNA599026 Other The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.   pubmed:33545088;pubmed:12470943     Zebrafish 004   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Swim bladder|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult CL100103178 L02 8 CL100103178 L02 8       RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP241982     CL100103178_L02_579_1.fq.gz CL100103178_L02_579_2.fq.gz fastq fastq 6784370200.0 67843702.0 CL100103178 L02 579 1.fq.gz 0:100 1:100 A:1799307225;C:1565118646;G:1599826091;T:1813320759;N:6797479 100 100     1799307225 1565118646 1599826091 1813320759 6797479 SRX7564573 SRS6001799 SRA1026516 BGI|BGI-Research BGI 1 0.91866   0.10227   0.71928   0.50827   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-01-15 Adult Adult Swim Bladder Swim Bladder
56000 56000 SRR10895907 SRX7564572 SRS6001799 SRP241982 PRJNA599026 Project of basal ray finned fishes PRJNA599026 Other The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.   pubmed:33545088;pubmed:12470943     Zebrafish 004   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Swim bladder|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult CL100103858 L02 8 CL100103858 L02 8       RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP241982     CL100103858_L02_529_2.fq.gz CL100103858_L02_529_1.fq.gz fastq fastq 10614517200.0 106145172.0 CL100103858 L02 529 1.fq.gz 0:100 1:100 A:2821297968;C:2430515408;G:2486443963;T:2861653662;N:14606199 100 100     2821297968 2430515408 2486443963 2861653662 14606199 SRX7564572 SRS6001799 SRA1026516 BGI|BGI-Research BGI 1 0.94747   0.08863   0.64632   0.50637   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-01-15 Adult Adult Swim Bladder Swim Bladder
56001 56001 SRR10895908 SRX7564571 SRS6001799 SRP241982 PRJNA599026 Project of basal ray finned fishes PRJNA599026 Other The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.   pubmed:33545088;pubmed:12470943     Zebrafish 004   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Swim bladder|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult CL100103858 L02 7 CL100103858 L02 7       RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP241982     CL100103858_L02_526_2.fq.gz CL100103858_L02_526_1.fq.gz fastq fastq 8829000400.0 88290004.0 CL100103858 L02 526 1.fq.gz 0:100 1:100 A:2346419057;C:2025176439;G:2073455037;T:2371666164;N:12283703 100 100     2346419057 2025176439 2073455037 2371666164 12283703 SRX7564571 SRS6001799 SRA1026516 BGI|BGI-Research BGI 1 0.93744   0.08552   0.70918   0.49156   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-01-15 Adult Adult Swim Bladder Swim Bladder
56002 56002 SRR10895909 SRX7564570 SRS6001798 SRP241982 PRJNA599026 Project of basal ray finned fishes PRJNA599026 Other The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.   pubmed:33545088;pubmed:12470943     Zebrafish 003   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Jaw|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult CL100103858 L02 6 CL100103858 L02 6       RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP241982     CL100103858_L02_524_1.fq.gz CL100103858_L02_524_2.fq.gz fastq fastq 8863838800.0 88638388.0 CL100103858 L02 524 1.fq.gz 0:100 1:100 A:2346347928;C:2037236505;G:2089998345;T:2378150886;N:12105136 100 100     2346347928 2037236505 2089998345 2378150886 12105136 SRX7564570 SRS6001798 SRA1026516 BGI|BGI-Research BGI 1 0.93198   0.08128   0.74519   0.48951   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-01-15 Adult Adult Jaw Surface Structure
56003 56003 SRR10895910 SRX7564569 SRS6001798 SRP241982 PRJNA599026 Project of basal ray finned fishes PRJNA599026 Other The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.   pubmed:33545088;pubmed:12470943     Zebrafish 003   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Jaw|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult CL100103858 L02 5 CL100103858 L02 5       RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP241982     CL100103858_L02_521_2.fq.gz CL100103858_L02_521_1.fq.gz fastq fastq 10301853000.0 103018530.0 CL100103858 L02 521 1.fq.gz 0:100 1:100 A:2719789797;C:2379371302;G:2435354849;T:2753122052;N:14215000 100 100     2719789797 2379371302 2435354849 2753122052 14215000 SRX7564569 SRS6001798 SRA1026516 BGI|BGI-Research BGI 1 0.93582   0.08016   0.73466   0.4997   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-01-15 Adult Adult Jaw Surface Structure
56004 56004 SRR10895911 SRX7564568 SRS6001798 SRP241982 PRJNA599026 Project of basal ray finned fishes PRJNA599026 Other The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.   pubmed:33545088;pubmed:12470943     Zebrafish 003   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Jaw|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult CL100103858 L02 4 CL100103858 L02 4       RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP241982     CL100103858_L02_522_1.fq.gz CL100103858_L02_522_2.fq.gz fastq fastq 8856151600.0 88561516.0 CL100103858 L02 522 1.fq.gz 0:100 1:100 A:2327973616;C:2055012813;G:2104952956;T:2356113813;N:12098402 100 100     2327973616 2055012813 2104952956 2356113813 12098402 SRX7564568 SRS6001798 SRA1026516 BGI|BGI-Research BGI 1 0.93888   0.07312   0.74337   0.50608   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-01-15 Adult Adult Jaw Surface Structure
56005 56005 SRR10895912 SRX7564567 SRS6001798 SRP241982 PRJNA599026 Project of basal ray finned fishes PRJNA599026 Other The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.   pubmed:33545088;pubmed:12470943     Zebrafish 003   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Jaw|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult CL100103858 L02 3 CL100103858 L02 3       RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP241982     CL100103858_L02_525_1.fq.gz CL100103858_L02_525_2.fq.gz fastq fastq 8393966200.0 83939662.0 CL100103858 L02 525 1.fq.gz 0:100 1:100 A:2205916604;C:1944354784;G:1992482736;T:2239434609;N:11777467 100 100     2205916604 1944354784 1992482736 2239434609 11777467 SRX7564567 SRS6001798 SRA1026516 BGI|BGI-Research BGI 1 0.93522   0.07124   0.73939   0.50385   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-01-15 Adult Adult Jaw Surface Structure
56006 56006 SRR10895914 SRX7564565 SRS6001798 SRP241982 PRJNA599026 Project of basal ray finned fishes PRJNA599026 Other The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.   pubmed:33545088;pubmed:12470943     Zebrafish 003   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Jaw|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult CL100103858 L02 2 CL100103858 L02 2       RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP241982     CL100103858_L02_523_2.fq.gz CL100103858_L02_523_1.fq.gz fastq fastq 9645085400.0 96450854.0 CL100103858 L02 523 1.fq.gz 0:100 1:100 A:2543300716;C:2229112849;G:2282624833;T:2576502560;N:13544442 100 100     2543300716 2229112849 2282624833 2576502560 13544442 SRX7564565 SRS6001798 SRA1026516 BGI|BGI-Research BGI 1 0.93673   0.0738   0.74337   0.49427   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-01-15 Adult Adult Jaw Surface Structure
56007 56007 SRR10895915 SRX7564564 SRS6001797 SRP241982 PRJNA599026 Project of basal ray finned fishes PRJNA599026 Other The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.   pubmed:33545088;pubmed:12470943     Zebrafish 002   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Gill|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult CL100101924 L01 4 CL100101924 L01 4       RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP241982     CL100101924_L01_542_2.fq.gz CL100101924_L01_542_1.fq.gz fastq fastq 9311999200.0 93119992.0 CL100101924 L01 542 1.fq.gz 0:100 1:100 A:2545207764;C:2065502824;G:2111148485;T:2578747353;N:11392774 100 100     2545207764 2065502824 2111148485 2578747353 11392774 SRX7564564 SRS6001797 SRA1026516 BGI|BGI-Research BGI 1 0.91339   0.10797   0.69792   0.52261   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-01-15 Adult Adult Gill Respiratory System
56008 56008 SRR10895916 SRX7564563 SRS6001797 SRP241982 PRJNA599026 Project of basal ray finned fishes PRJNA599026 Other The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.   pubmed:33545088;pubmed:12470943     Zebrafish 002   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Gill|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult CL100101924 L01 3 CL100101924 L01 3       RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP241982     CL100101924_L01_541_1.fq.gz CL100101924_L01_541_2.fq.gz fastq fastq 10478802600.0 104788026.0 CL100101924 L01 541 1.fq.gz 0:100 1:100 A:2866250643;C:2322460084;G:2375280057;T:2901876128;N:12935688 100 100     2866250643 2322460084 2375280057 2901876128 12935688 SRX7564563 SRS6001797 SRA1026516 BGI|BGI-Research BGI 1 0.9209   0.11359   0.69858   0.53578   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-01-15 Adult Adult Gill Respiratory System
56009 56009 SRR10895917 SRX7564562 SRS6001797 SRP241982 PRJNA599026 Project of basal ray finned fishes PRJNA599026 Other The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.   pubmed:33545088;pubmed:12470943     Zebrafish 002   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Gill|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult CL100101924 L01 2 CL100101924 L01 2       RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP241982     CL100101924_L01_543_1.fq.gz CL100101924_L01_543_2.fq.gz fastq fastq 10370355000.0 103703550.0 CL100101924 L01 543 1.fq.gz 0:100 1:100 A:2824450277;C:2308377166;G:2360285452;T:2864390654;N:12851451 100 100     2824450277 2308377166 2360285452 2864390654 12851451 SRX7564562 SRS6001797 SRA1026516 BGI|BGI-Research BGI 1 0.91018   0.09651   0.70224   0.53831   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-01-15 Adult Adult Gill Respiratory System
56010 56010 SRR10895918 SRX7564561 SRS6001797 SRP241982 PRJNA599026 Project of basal ray finned fishes PRJNA599026 Other The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.   pubmed:33545088;pubmed:12470943     Zebrafish 002   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Gill|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult CL100101924 L01 CL100101924 L01       RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP241982     CL100101924_L01_544_2.fq.gz CL100101924_L01_544_1.fq.gz fastq fastq 8686710000.0 86867100.0 CL100101924 L01 544 1.fq.gz 0:100 1:100 A:2361387592;C:1935295339;G:1982562294;T:2396806096;N:10658679 100 100     2361387592 1935295339 1982562294 2396806096 10658679 SRX7564561 SRS6001797 SRA1026516 BGI|BGI-Research BGI 1 0.90603   0.12145   0.69412   0.52836   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-01-15 Adult Adult Gill Respiratory System
56011 56011 SRR10895919 SRX7564560 SRS6001797 SRP241982 PRJNA599026 Project of basal ray finned fishes PRJNA599026 Other The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.   pubmed:33545088;pubmed:12470943     Zebrafish 002   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Gill|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult CL100103858 L02 CL100103858 L02       RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP241982     CL100103858_L02_530_1.fq.gz CL100103858_L02_530_2.fq.gz fastq fastq 9390776200.0 93907762.0 CL100103858 L02 530 1.fq.gz 0:100 1:100 A:2561256067;C:2084956400;G:2134804271;T:2596713447;N:13046015 100 100     2561256067 2084956400 2134804271 2596713447 13046015 SRX7564560 SRS6001797 SRA1026516 BGI|BGI-Research BGI 1 0.91926   0.11028   0.69485   0.54756   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-01-15 Adult Adult Gill Respiratory System
56012 56012 SRR10895920 SRX7564559 SRS6001795 SRP241982 PRJNA599026 Project of basal ray finned fishes PRJNA599026 Other The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.   pubmed:33545088;pubmed:12470943     Zebrafish 001   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Liver|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult CL100103858 L01 5 CL100103858 L01 5       RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP241982     CL100103858_L01_506_2.fq.gz CL100103858_L01_506_1.fq.gz fastq fastq 8894951400.0 88949514.0 CL100103858 L01 506 1.fq.gz 0:100 1:100 A:2342120919;C:2080816976;G:2120799988;T:2335970174;N:15243343 100 100     2342120919 2080816976 2120799988 2335970174 15243343 SRX7564559 SRS6001795 SRA1026516 BGI|BGI-Research BGI 1 0.9583   0.02358   0.88609   0.21491   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-01-15 Adult Adult Liver Liver and Biliary System
56013 56013 SRR10895921 SRX7564558 SRS6001795 SRP241982 PRJNA599026 Project of basal ray finned fishes PRJNA599026 Other The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.   pubmed:33545088;pubmed:12470943     Zebrafish 001   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Liver|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult CL100103858 L01 4 CL100103858 L01 4       RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP241982     CL100103858_L01_502_1.fq.gz CL100103858_L01_502_2.fq.gz fastq fastq 9016276200.0 90162762.0 CL100103858 L01 502 1.fq.gz 0:100 1:100 A:2351547777;C:2123700654;G:2170958690;T:2354500550;N:15568529 100 100     2351547777 2123700654 2170958690 2354500550 15568529 SRX7564558 SRS6001795 SRA1026516 BGI|BGI-Research BGI 1 0.951   0.0278   0.84476   0.28629   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-01-15 Adult Adult Liver Liver and Biliary System
56014 56014 SRR10895922 SRX7564557 SRS6001795 SRP241982 PRJNA599026 Project of basal ray finned fishes PRJNA599026 Other The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.   pubmed:33545088;pubmed:12470943     Zebrafish 001   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Liver|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult CL100103858 L01 3 CL100103858 L01 3       RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP241982     CL100103858_L01_504_2.fq.gz CL100103858_L01_504_1.fq.gz fastq fastq 8533635000.0 85336350.0 CL100103858 L01 504 1.fq.gz 0:100 1:100 A:2252394702;C:1967888849;G:2019361190;T:2279066552;N:14923707 100 100     2252394702 1967888849 2019361190 2279066552 14923707 SRX7564557 SRS6001795 SRA1026516 BGI|BGI-Research BGI 1 0.94212   0.04536   0.80099   0.49769   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-01-15 Adult Adult Liver Liver and Biliary System
56015 56015 SRR10895923 SRX7564556 SRS6001795 SRP241982 PRJNA599026 Project of basal ray finned fishes PRJNA599026 Other The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.   pubmed:33545088;pubmed:12470943     Zebrafish 001   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Liver|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult CL100103858 L01 2 CL100103858 L01 2       RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP241982     CL100103858_L01_503_1.fq.gz CL100103858_L01_503_2.fq.gz fastq fastq 9344789800.0 93447898.0 CL100103858 L01 503 1.fq.gz 0:100 1:100 A:2456933695;C:2188901617;G:2230043511;T:2452921108;N:15989869 100 100     2456933695 2188901617 2230043511 2452921108 15989869 SRX7564556 SRS6001795 SRA1026516 BGI|BGI-Research BGI 1 0.95239   0.01872   0.88026   0.24265   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-01-15 Adult Adult Liver Liver and Biliary System
56016 56016 SRR10895925 SRX7564554 SRS6001795 SRP241982 PRJNA599026 Project of basal ray finned fishes PRJNA599026 Other The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.   pubmed:33545088;pubmed:12470943     Zebrafish 001   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Liver|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult CL100103858 L01 CL100103858 L01       RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP241982     CL100103858_L01_501_1.fq.gz CL100103858_L01_501_2.fq.gz fastq fastq 8939441800.0 89394418.0 CL100103858 L01 501 1.fq.gz 0:100 1:100 A:2371368780;C:2076807210;G:2121148823;T:2354885910;N:15231077 100 100     2371368780 2076807210 2121148823 2354885910 15231077 SRX7564554 SRS6001795 SRA1026516 BGI|BGI-Research BGI 1 0.94776   0.01842   0.88822   0.16376   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-01-15 Adult Adult Liver Liver and Biliary System
63046 63046 SRR13587431 SRX9982126 SRS8153604 SRP303929 PRJNA698005 Danio rerio Raw sequence reads PRJNA698005 Whole Genome Sequencing Danio rerio Raw RNA sequence reads       Model organism or animal sample from Danio rerio The head kidney of Danio rerio   isolate:river|age:adult|sex:not determined|tissue:head kidney|BioSampleModel:Model organism or animal                 9ZHK 9ZHK 9ZHK The head kidney experiment repeat 3 of Gobiocypris rarus     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP303929     9ZHK_1.fq.gz 9ZHK_2.fq.gz fastq fastq 8120179200.0 54134528.0 9ZHK 1.fq.gz 0:150 1:150 A:2233782125;C:1817163304;G:1810150041;T:2259083730;N:0 150 150     2233782125 1817163304 1810150041 2259083730 0 SRX9982126 SRS8153604 SRA1189633 Center for Ecological and Environmental Sciences|Northwestern Polytechnical University Center for Ecological and Environmental Sciences 1 0.92334   0.08214   0.71926   0.53557   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2021-01-30 Adult Adult Kidney Renal System
63047 63047 SRR13587432 SRX9982125 SRS8153604 SRP303929 PRJNA698005 Danio rerio Raw sequence reads PRJNA698005 Whole Genome Sequencing Danio rerio Raw RNA sequence reads       Model organism or animal sample from Danio rerio The head kidney of Danio rerio   isolate:river|age:adult|sex:not determined|tissue:head kidney|BioSampleModel:Model organism or animal                 24ZHK 24ZHK 24ZHK The head kidney control repeat 3 of Gobiocypris rarus     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP303929     24ZHK_1.fq.gz 24ZHK_2.fq.gz fastq fastq 8285296800.0 55235312.0 24ZHK 1.fq.gz 0:150 1:150 A:2319759918;C:1824087204;G:1797861715;T:2343319625;N:268338 150 150     2319759918 1824087204 1797861715 2343319625 268338 SRX9982125 SRS8153604 SRA1189633 Center for Ecological and Environmental Sciences|Northwestern Polytechnical University Center for Ecological and Environmental Sciences 1 0.93067   0.0988   0.74241   0.55453   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2021-01-30 Adult Adult Kidney Renal System
63048 63048 SRR13587433 SRX9982124 SRS8153604 SRP303929 PRJNA698005 Danio rerio Raw sequence reads PRJNA698005 Whole Genome Sequencing Danio rerio Raw RNA sequence reads       Model organism or animal sample from Danio rerio The head kidney of Danio rerio   isolate:river|age:adult|sex:not determined|tissue:head kidney|BioSampleModel:Model organism or animal                 8ZHK 8ZHK 8ZHK The head kidney experiment repeat 2 of Gobiocypris rarus     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP303929     8ZHK_1.fq.gz 8ZHK_2.fq.gz fastq fastq 8153939700.0 54359598.0 8ZHK 1.fq.gz 0:150 1:150 A:2258284333;C:1815761334;G:1799498163;T:2279047560;N:1348310 150 150     2258284333 1815761334 1799498163 2279047560 1348310 SRX9982124 SRS8153604 SRA1189633 Center for Ecological and Environmental Sciences|Northwestern Polytechnical University Center for Ecological and Environmental Sciences 1 0.91032   0.08827   0.72673   0.51792   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2021-01-30 Adult Adult Kidney Renal System
63049 63049 SRR13587434 SRX9982123 SRS8153604 SRP303929 PRJNA698005 Danio rerio Raw sequence reads PRJNA698005 Whole Genome Sequencing Danio rerio Raw RNA sequence reads       Model organism or animal sample from Danio rerio The head kidney of Danio rerio   isolate:river|age:adult|sex:not determined|tissue:head kidney|BioSampleModel:Model organism or animal                 19Z HK 19Z HK 19Z HK The head kidney control repeat 2 of Gobiocypris rarus     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP303929     19Z_HK_1.fq.gz 19Z_HK_2.fq.gz fastq fastq 8406183300.0 56041222.0 19Z HK 1.fq.gz 0:150 1:150 A:2335489974;C:1857072213;G:1842430689;T:2370663226;N:527198 150 150     2335489974 1857072213 1842430689 2370663226 527198 SRX9982123 SRS8153604 SRA1189633 Center for Ecological and Environmental Sciences|Northwestern Polytechnical University Center for Ecological and Environmental Sciences 1 0.90938   0.09376   0.72486   0.55731   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2021-01-30 Adult Adult Kidney Renal System
63050 63050 SRR13587435 SRX9982122 SRS8153604 SRP303929 PRJNA698005 Danio rerio Raw sequence reads PRJNA698005 Whole Genome Sequencing Danio rerio Raw RNA sequence reads       Model organism or animal sample from Danio rerio The head kidney of Danio rerio   isolate:river|age:adult|sex:not determined|tissue:head kidney|BioSampleModel:Model organism or animal                 10ZHK 10ZHK 10ZHK The head kidney experiment repeat 1 of Gobiocypris rarus     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP303929     10ZHK_1.fq.gz 10ZHK_2.fq.gz fastq fastq 8039735100.0 53598234.0 10ZHK 1.fq.gz 0:150 1:150 A:2243931802;C:1770968625;G:1759940752;T:2264893921;N:0 150 150     2243931802 1770968625 1759940752 2264893921 0 SRX9982122 SRS8153604 SRA1189633 Center for Ecological and Environmental Sciences|Northwestern Polytechnical University Center for Ecological and Environmental Sciences 1 0.9182   0.10087   0.71417   0.54166   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2021-01-30 Adult Adult Kidney Renal System
63051 63051 SRR13587436 SRX9982121 SRS8153604 SRP303929 PRJNA698005 Danio rerio Raw sequence reads PRJNA698005 Whole Genome Sequencing Danio rerio Raw RNA sequence reads       Model organism or animal sample from Danio rerio The head kidney of Danio rerio   isolate:river|age:adult|sex:not determined|tissue:head kidney|BioSampleModel:Model organism or animal                 10Z HK 10Z HK 10Z HK The head kidney control repeat 1 of Gobiocypris rarus     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP303929     10Z_HK_1.fq.gz 10Z_HK_2.fq.gz fastq fastq 8419659600.0 56131064.0 10Z HK 1.fq.gz 0:150 1:150 A:2310224890;C:1885764527;G:1880790942;T:2342359008;N:520233 150 150     2310224890 1885764527 1880790942 2342359008 520233 SRX9982121 SRS8153604 SRA1189633 Center for Ecological and Environmental Sciences|Northwestern Polytechnical University Center for Ecological and Environmental Sciences 1 0.91616   0.06612   0.76152   0.37751   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2021-01-30 Adult Adult Kidney Renal System
63052 63052 SRR13587425 SRX9982120 SRS8153603 SRP303929 PRJNA698005 Danio rerio Raw sequence reads PRJNA698005 Whole Genome Sequencing Danio rerio Raw RNA sequence reads       Model organism or animal sample from Danio rerio The gill of Danio rerio   isolate:river|age:adult|sex:not determined|tissue:gill|BioSampleModel:Model organism or animal                 9ZG 9ZG 9ZG The gill experiment repeat 3 of Danio rerio     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP303929     9ZG_1.fq.gz 9ZG_2.fq.gz fastq fastq 8056935600.0 53712904.0 9ZG 1.fq.gz 0:150 1:150 A:2282673113;C:1739857627;G:1727599599;T:2306805261;N:0 150 150     2282673113 1739857627 1727599599 2306805261 0 SRX9982120 SRS8153603 SRA1189632 Center for Ecological and Environmental Sciences|Northwestern Polytechnical University Center for Ecological and Environmental Sciences 1 0.89727   0.12013   0.70043   0.53736   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2021-01-30 Adult Adult Gill Respiratory System
63053 63053 SRR13587426 SRX9982119 SRS8153603 SRP303929 PRJNA698005 Danio rerio Raw sequence reads PRJNA698005 Whole Genome Sequencing Danio rerio Raw RNA sequence reads       Model organism or animal sample from Danio rerio The gill of Danio rerio   isolate:river|age:adult|sex:not determined|tissue:gill|BioSampleModel:Model organism or animal                 24ZG 24ZG 24ZG The gill control repeat 3 of Danio rerio     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP303929     24ZG_1.fq.gz 24ZG_2.fq.gz fastq fastq 8223747600.0 54824984.0 24ZG 1.fq.gz 0:150 1:150 A:2300974904;C:1808864978;G:1782331401;T:2331317250;N:259067 150 150     2300974904 1808864978 1782331401 2331317250 259067 SRX9982119 SRS8153603 SRA1189632 Center for Ecological and Environmental Sciences|Northwestern Polytechnical University Center for Ecological and Environmental Sciences 1 0.89723   0.1296   0.69392   0.52375   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2021-01-30 Adult Adult Gill Respiratory System
63054 63054 SRR13587427 SRX9982118 SRS8153603 SRP303929 PRJNA698005 Danio rerio Raw sequence reads PRJNA698005 Whole Genome Sequencing Danio rerio Raw RNA sequence reads       Model organism or animal sample from Danio rerio The gill of Danio rerio   isolate:river|age:adult|sex:not determined|tissue:gill|BioSampleModel:Model organism or animal                 8ZG 8ZG 8ZG The gill experiment repeat 2 of Danio rerio     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP303929     8ZG_1.fq.gz 8ZG_2.fq.gz fastq fastq 8214407100.0 54762714.0 8ZG 1.fq.gz 0:150 1:150 A:2359573564;C:1747625839;G:1728726696;T:2377197140;N:1283861 150 150     2359573564 1747625839 1728726696 2377197140 1283861 SRX9982118 SRS8153603 SRA1189632 Center for Ecological and Environmental Sciences|Northwestern Polytechnical University Center for Ecological and Environmental Sciences 1 0.88408   0.12447   0.72086   0.55321   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2021-01-30 Adult Adult Gill Respiratory System
63055 63055 SRR13587428 SRX9982117 SRS8153603 SRP303929 PRJNA698005 Danio rerio Raw sequence reads PRJNA698005 Whole Genome Sequencing Danio rerio Raw RNA sequence reads       Model organism or animal sample from Danio rerio The gill of Danio rerio   isolate:river|age:adult|sex:not determined|tissue:gill|BioSampleModel:Model organism or animal                 19Z G 19Z G 19Z G The gill control repeat 2 of Danio rerio     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP303929     19Z_G_1.fq.gz 19Z_G_2.fq.gz fastq fastq 8028541200.0 53523608.0 19Z G 1.fq.gz 0:150 1:150 A:2247179404;C:1754236774;G:1743325699;T:2283346353;N:452970 150 150     2247179404 1754236774 1743325699 2283346353 452970 SRX9982117 SRS8153603 SRA1189632 Center for Ecological and Environmental Sciences|Northwestern Polytechnical University Center for Ecological and Environmental Sciences 1 0.89168   0.12028   0.69583   0.53641   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2021-01-30 Adult Adult Gill Respiratory System
63056 63056 SRR13587429 SRX9982116 SRS8153603 SRP303929 PRJNA698005 Danio rerio Raw sequence reads PRJNA698005 Whole Genome Sequencing Danio rerio Raw RNA sequence reads       Model organism or animal sample from Danio rerio The gill of Danio rerio   isolate:river|age:adult|sex:not determined|tissue:gill|BioSampleModel:Model organism or animal                 10ZG 10ZG 10ZG The gill experiment repeat 1 of Danio rerio     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP303929     10ZG_1.fq.gz 10ZG_2.fq.gz fastq fastq 8082344700.0 53882298.0 10ZG 1.fq.gz 0:150 1:150 A:2320760605;C:1718839525;G:1702987067;T:2339757503;N:0 150 150     2320760605 1718839525 1702987067 2339757503 0 SRX9982116 SRS8153603 SRA1189632 Center for Ecological and Environmental Sciences|Northwestern Polytechnical University Center for Ecological and Environmental Sciences 1 0.89032   0.12963   0.70183   0.53117   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2021-01-30 Adult Adult Gill Respiratory System
63057 63057 SRR13587430 SRX9982115 SRS8153603 SRP303929 PRJNA698005 Danio rerio Raw sequence reads PRJNA698005 Whole Genome Sequencing Danio rerio Raw RNA sequence reads       Model organism or animal sample from Danio rerio The gill of Danio rerio   isolate:river|age:adult|sex:not determined|tissue:gill|BioSampleModel:Model organism or animal                 10Z G 10Z G 10Z G The gill control repeat 1 of Danio rerio     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP303929     10Z_G_1.fq.gz 10Z_G_2.fq.gz fastq fastq 8110400400.0 54069336.0 10Z G 1.fq.gz 0:150 1:150 A:2285699758;C:1760759240;G:1749573038;T:2313865140;N:503224 150 150     2285699758 1760759240 1749573038 2313865140 503224 SRX9982115 SRS8153603 SRA1189632 Center for Ecological and Environmental Sciences|Northwestern Polytechnical University Center for Ecological and Environmental Sciences 1 0.88013   0.10821   0.70364   0.55271   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2021-01-30 Adult Adult Gill Respiratory System
63058 63058 SRR13587413 SRX9982108 SRS8153601 SRP303929 PRJNA698005 Danio rerio Raw sequence reads PRJNA698005 Whole Genome Sequencing Danio rerio Raw RNA sequence reads       Model organism or animal sample from Danio rerio The kidney of Danio rerio   isolate:river|age:adult|sex:not collected|tissue:kidney|BioSampleModel:Model organism or animal                 9ZK 9ZK 9ZK The kidney experiment repeat 3 of Gobiocypris rarus     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP303929     9ZK_1.fq.gz 9ZK_2.fq.gz fastq fastq 8175736200.0 54504908.0 9ZK 1.fq.gz 0:150 1:150 A:2263839094;C:1817074671;G:1806345887;T:2288476548;N:0 150 150     2263839094 1817074671 1806345887 2288476548 0 SRX9982108 SRS8153601 SRA1189630 Center for Ecological and Environmental Sciences|Northwestern Polytechnical University Center for Ecological and Environmental Sciences 1 0.92014   0.08977   0.72236   0.53162   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2021-01-30 Adult Adult Kidney Renal System
63059 63059 SRR13587414 SRX9982107 SRS8153601 SRP303929 PRJNA698005 Danio rerio Raw sequence reads PRJNA698005 Whole Genome Sequencing Danio rerio Raw RNA sequence reads       Model organism or animal sample from Danio rerio The kidney of Danio rerio   isolate:river|age:adult|sex:not collected|tissue:kidney|BioSampleModel:Model organism or animal                 24ZK 24ZK 24ZK The kidney control repeat 3 of Gobiocypris rarus     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP303929     24ZK_1.fq.gz 24ZK_2.fq.gz fastq fastq 8238567600.0 54923784.0 24ZK 1.fq.gz 0:150 1:150 A:2258633038;C:1860080137;G:1835508827;T:2284016515;N:329083 150 150     2258633038 1860080137 1835508827 2284016515 329083 SRX9982107 SRS8153601 SRA1189630 Center for Ecological and Environmental Sciences|Northwestern Polytechnical University Center for Ecological and Environmental Sciences 1 0.92468   0.0959   0.70907   0.53327   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2021-01-30 Adult Adult Kidney Renal System
63060 63060 SRR13587415 SRX9982106 SRS8153601 SRP303929 PRJNA698005 Danio rerio Raw sequence reads PRJNA698005 Whole Genome Sequencing Danio rerio Raw RNA sequence reads       Model organism or animal sample from Danio rerio The kidney of Danio rerio   isolate:river|age:adult|sex:not collected|tissue:kidney|BioSampleModel:Model organism or animal                 8ZK 8ZK 8ZK The kidney experiment repeat 2 of Gobiocypris rarus     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP303929     8ZK_1.fq.gz 8ZK_2.fq.gz fastq fastq 8191887900.0 54612586.0 8ZK 1.fq.gz 0:150 1:150 A:2267646460;C:1825604395;G:1807903598;T:2289958188;N:775259 150 150     2267646460 1825604395 1807903598 2289958188 775259 SRX9982106 SRS8153601 SRA1189630 Center for Ecological and Environmental Sciences|Northwestern Polytechnical University Center for Ecological and Environmental Sciences 1 0.91157   0.09088   0.72723   0.52217   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2021-01-30 Adult Adult Kidney Renal System
63061 63061 SRR13587416 SRX9982105 SRS8153601 SRP303929 PRJNA698005 Danio rerio Raw sequence reads PRJNA698005 Whole Genome Sequencing Danio rerio Raw RNA sequence reads       Model organism or animal sample from Danio rerio The kidney of Danio rerio   isolate:river|age:adult|sex:not collected|tissue:kidney|BioSampleModel:Model organism or animal                 19Z K 19Z K 19Z K The kidney control repeat 2 of Gobiocypris rarus     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP303929     19Z_K_1.fq.gz 19Z_K_2.fq.gz fastq fastq 8402134200.0 56014228.0 19Z K 1.fq.gz 0:150 1:150 A:2338499372;C:1849973662;G:1840214821;T:2372961719;N:484626 150 150     2338499372 1849973662 1840214821 2372961719 484626 SRX9982105 SRS8153601 SRA1189630 Center for Ecological and Environmental Sciences|Northwestern Polytechnical University Center for Ecological and Environmental Sciences 1 0.90113   0.10231   0.72703   0.56124   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2021-01-30 Adult Adult Kidney Renal System
63062 63062 SRR13587417 SRX9982104 SRS8153601 SRP303929 PRJNA698005 Danio rerio Raw sequence reads PRJNA698005 Whole Genome Sequencing Danio rerio Raw RNA sequence reads       Model organism or animal sample from Danio rerio The kidney of Danio rerio   isolate:river|age:adult|sex:not collected|tissue:kidney|BioSampleModel:Model organism or animal                 10ZK 10ZK 10ZK The kidney experiment repeat 1 of Gobiocypris rarus     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP303929     10ZK_1.fq.gz 10ZK_2.fq.gz fastq fastq 8208016200.0 54720108.0 10ZK 1.fq.gz 0:150 1:150 A:2303193070;C:1796200671;G:1783288010;T:2325334449;N:0 150 150     2303193070 1796200671 1783288010 2325334449 0 SRX9982104 SRS8153601 SRA1189630 Center for Ecological and Environmental Sciences|Northwestern Polytechnical University Center for Ecological and Environmental Sciences 1 0.9173   0.1039   0.72224   0.541   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2021-01-30 Adult Adult Kidney Renal System
63063 63063 SRR13587418 SRX9982103 SRS8153601 SRP303929 PRJNA698005 Danio rerio Raw sequence reads PRJNA698005 Whole Genome Sequencing Danio rerio Raw RNA sequence reads       Model organism or animal sample from Danio rerio The kidney of Danio rerio   isolate:river|age:adult|sex:not collected|tissue:kidney|BioSampleModel:Model organism or animal                 10Z K 10Z K 10Z K The kidney control repeat 1 of Gobiocypris rarus     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP303929     10Z_K_1.fq.gz 10Z_K_2.fq.gz fastq fastq 8205024600.0 54700164.0 10Z K 1.fq.gz 0:150 1:150 A:2259032946;C:1833449876;G:1824313852;T:2287704541;N:523385 150 150     2259032946 1833449876 1824313852 2287704541 523385 SRX9982103 SRS8153601 SRA1189630 Center for Ecological and Environmental Sciences|Northwestern Polytechnical University Center for Ecological and Environmental Sciences 1 0.91993   0.0808   0.73308   0.55396   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2021-01-30 Adult Adult Kidney Renal System
63064 63064 SRR13587396 SRX9982091 SRS8153596 SRP303929 PRJNA698005 Danio rerio Raw sequence reads PRJNA698005 Whole Genome Sequencing Danio rerio Raw RNA sequence reads       Model organism or animal sample from Danio rerio The liver of Danio rerio   isolate:river|age:adult|sex:not collected|tissue:liver|BioSampleModel:Model organism or animal                 9ZL 9ZL 9ZL The liver experiment repeat 3 of Gobiocypris rarus     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP303929     9ZL_1.fq.gz 9ZL_2.fq.gz fastq fastq 8277847200.0 55185648.0 9ZL 1.fq.gz 0:150 1:150 A:2225896552;C:1891447719;G:1890393643;T:2270109286;N:0 150 150     2225896552 1891447719 1890393643 2270109286 0 SRX9982091 SRS8153596 SRA1189625 Center for Ecological and Environmental Sciences|Northwestern Polytechnical University Center for Ecological and Environmental Sciences 1 0.92352   0.05455   0.78634   0.53539   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2021-01-30 Adult Adult Liver Liver and Biliary System
63065 63065 SRR13587397 SRX9982090 SRS8153596 SRP303929 PRJNA698005 Danio rerio Raw sequence reads PRJNA698005 Whole Genome Sequencing Danio rerio Raw RNA sequence reads       Model organism or animal sample from Danio rerio The liver of Danio rerio   isolate:river|age:adult|sex:not collected|tissue:liver|BioSampleModel:Model organism or animal                 24ZL 24ZL 24ZL The liver control repeat 3 of Gobiocypris rarus     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP303929     24ZL_1.fq.gz 24ZL_2.fq.gz fastq fastq 8242802100.0 54952014.0 24ZL 1.fq.gz 0:150 1:150 A:2188471818;C:1925051043;G:1912682001;T:2215800017;N:797221 150 150     2188471818 1925051043 1912682001 2215800017 797221 SRX9982090 SRS8153596 SRA1189625 Center for Ecological and Environmental Sciences|Northwestern Polytechnical University Center for Ecological and Environmental Sciences 1 0.96458   0.02693   0.88657   0.1634   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2021-01-30 Adult Adult Liver Liver and Biliary System
63066 63066 SRR13587398 SRX9982089 SRS8153596 SRP303929 PRJNA698005 Danio rerio Raw sequence reads PRJNA698005 Whole Genome Sequencing Danio rerio Raw RNA sequence reads       Model organism or animal sample from Danio rerio The liver of Danio rerio   isolate:river|age:adult|sex:not collected|tissue:liver|BioSampleModel:Model organism or animal                 8ZL 8ZL 8ZL The liver experiment repeat 2 of Gobiocypris rarus     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP303929     8ZL_1.fq.gz 8ZL_2.fq.gz fastq fastq 8320145700.0 55467638.0 8ZL 1.fq.gz 0:150 1:150 A:2269869967;C:1877995864;G:1875902564;T:2295652508;N:724797 150 150     2269869967 1877995864 1875902564 2295652508 724797 SRX9982089 SRS8153596 SRA1189625 Center for Ecological and Environmental Sciences|Northwestern Polytechnical University Center for Ecological and Environmental Sciences 1 0.92304   0.06156   0.76934   0.50603   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2021-01-30 Adult Adult Liver Liver and Biliary System
63067 63067 SRR13587399 SRX9982088 SRS8153596 SRP303929 PRJNA698005 Danio rerio Raw sequence reads PRJNA698005 Whole Genome Sequencing Danio rerio Raw RNA sequence reads       Model organism or animal sample from Danio rerio The liver of Danio rerio   isolate:river|age:adult|sex:not collected|tissue:liver|BioSampleModel:Model organism or animal                 19Z L 19Z L 19Z L The liver control repeat 2 of Gobiocypris rarus     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP303929     19Z_L_1.fq.gz 19Z_L_2.fq.gz fastq fastq 8201244900.0 54674966.0 19Z L 1.fq.gz 0:150 1:150 A:2200752559;C:1868893233;G:1888687787;T:2242402488;N:508833 150 150     2200752559 1868893233 1888687787 2242402488 508833 SRX9982088 SRS8153596 SRA1189625 Center for Ecological and Environmental Sciences|Northwestern Polytechnical University Center for Ecological and Environmental Sciences 1 0.92245   0.05108   0.81537   0.53503   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2021-01-30 Adult Adult Liver Liver and Biliary System
63068 63068 SRR13587400 SRX9982087 SRS8153596 SRP303929 PRJNA698005 Danio rerio Raw sequence reads PRJNA698005 Whole Genome Sequencing Danio rerio Raw RNA sequence reads       Model organism or animal sample from Danio rerio The liver of Danio rerio   isolate:river|age:adult|sex:not collected|tissue:liver|BioSampleModel:Model organism or animal                 10ZL 10ZL 10ZL The liver experiment repeat 1 of Gobiocypris rarus     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP303929     10ZL_1.fq.gz 10ZL_2.fq.gz fastq fastq 8354384700.0 55695898.0 10ZL 1.fq.gz 0:150 1:150 A:2242193475;C:1918649445;G:1915390096;T:2278151684;N:0 150 150     2242193475 1918649445 1915390096 2278151684 0 SRX9982087 SRS8153596 SRA1189625 Center for Ecological and Environmental Sciences|Northwestern Polytechnical University Center for Ecological and Environmental Sciences 1 0.93588   0.03779   0.82467   0.32152   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2021-01-30 Adult Adult Liver Liver and Biliary System
63069 63069 SRR13587401 SRX9982086 SRS8153596 SRP303929 PRJNA698005 Danio rerio Raw sequence reads PRJNA698005 Whole Genome Sequencing Danio rerio Raw RNA sequence reads       Model organism or animal sample from Danio rerio The liver of Danio rerio   isolate:river|age:adult|sex:not collected|tissue:liver|BioSampleModel:Model organism or animal                 10Z L 10Z L 10Z L The liver control repeat 1 of Gobiocypris rarus     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP303929     10Z_L_1.fq.gz 10Z_L_2.fq.gz fastq fastq 8165319000.0 54435460.0 10Z L 1.fq.gz 0:150 1:150 A:2167746213;C:1898899329;G:1895642875;T:2202563231;N:467352 150 150     2167746213 1898899329 1895642875 2202563231 467352 SRX9982086 SRS8153596 SRA1189625 Center for Ecological and Environmental Sciences|Northwestern Polytechnical University Center for Ecological and Environmental Sciences 1 0.92701   0.02566   0.85064   0.19733   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2021-01-30 Adult Adult Liver Liver and Biliary System
63070 63070 SRR13587384 SRX9982079 SRS8153594 SRP303929 PRJNA698005 Danio rerio Raw sequence reads PRJNA698005 Whole Genome Sequencing Danio rerio Raw RNA sequence reads       Model organism or animal sample from Danio rerio The spleen of Danio rerio   isolate:river|age:adult|sex:not collected|tissue:spleen|BioSampleModel:Model organism or animal                 9ZS 9ZS 9ZS The spleen experiment repeat 3 of Gobiocypris rarus     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP303929     9ZS_1.fq.gz 9ZS_2.fq.gz fastq fastq 8205802500.0 54705350.0 9ZS 1.fq.gz 0:150 1:150 A:2280163497;C:1814966062;G:1803870112;T:2306802829;N:0 150 150     2280163497 1814966062 1803870112 2306802829 0 SRX9982079 SRS8153594 SRA1189624 Center for Ecological and Environmental Sciences|Northwestern Polytechnical University Center for Ecological and Environmental Sciences 1 0.90674   0.10519   0.73225   0.50894   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2021-01-30 Adult Adult Spleen Hematopoietic System
63071 63071 SRR13587385 SRX9982078 SRS8153594 SRP303929 PRJNA698005 Danio rerio Raw sequence reads PRJNA698005 Whole Genome Sequencing Danio rerio Raw RNA sequence reads       Model organism or animal sample from Danio rerio The spleen of Danio rerio   isolate:river|age:adult|sex:not collected|tissue:spleen|BioSampleModel:Model organism or animal                 24ZS 24ZS 24ZS The spleen control repeat 3 of Gobiocypris rarus     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP303929     24ZS_1.fq.gz 24ZS_2.fq.gz fastq fastq 8279731500.0 55198210.0 24ZS 1.fq.gz 0:150 1:150 A:2228188611;C:1909382391;G:1884421138;T:2257483634;N:255726 150 150     2228188611 1909382391 1884421138 2257483634 255726 SRX9982078 SRS8153594 SRA1189624 Center for Ecological and Environmental Sciences|Northwestern Polytechnical University Center for Ecological and Environmental Sciences 1 0.91852   0.09459   0.74539   0.51194   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2021-01-30 Adult Adult Spleen Hematopoietic System
63072 63072 SRR13587386 SRX9982077 SRS8153594 SRP303929 PRJNA698005 Danio rerio Raw sequence reads PRJNA698005 Whole Genome Sequencing Danio rerio Raw RNA sequence reads       Model organism or animal sample from Danio rerio The spleen of Danio rerio   isolate:river|age:adult|sex:not collected|tissue:spleen|BioSampleModel:Model organism or animal                 8ZS 8ZS 8ZS The spleen experiment repeat 2 of Gobiocypris rarus     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP303929     8ZS_1.fq.gz 8ZS_2.fq.gz fastq fastq 8376961800.0 55846412.0 8ZS 1.fq.gz 0:150 1:150 A:2362175703;C:1822140642;G:1805332183;T:2386668646;N:644626 150 150     2362175703 1822140642 1805332183 2386668646 644626 SRX9982077 SRS8153594 SRA1189624 Center for Ecological and Environmental Sciences|Northwestern Polytechnical University Center for Ecological and Environmental Sciences 1 0.89088   0.11828   0.74138   0.51485   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2021-01-30 Adult Adult Spleen Hematopoietic System
63073 63073 SRR13587387 SRX9982076 SRS8153594 SRP303929 PRJNA698005 Danio rerio Raw sequence reads PRJNA698005 Whole Genome Sequencing Danio rerio Raw RNA sequence reads       Model organism or animal sample from Danio rerio The spleen of Danio rerio   isolate:river|age:adult|sex:not collected|tissue:spleen|BioSampleModel:Model organism or animal                 19Z S 19Z S 19Z S The spleen control repeat 2 of Gobiocypris rarus     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP303929     19Z_S_1.fq.gz 19Z_S_2.fq.gz fastq fastq 8390649600.0 55937664.0 19Z S 1.fq.gz 0:150 1:150 A:2302584143;C:1877946699;G:1869505731;T:2340091695;N:521332 150 150     2302584143 1877946699 1869505731 2340091695 521332 SRX9982076 SRS8153594 SRA1189624 Center for Ecological and Environmental Sciences|Northwestern Polytechnical University Center for Ecological and Environmental Sciences 1 0.89383   0.11774   0.73359   0.4805   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2021-01-30 Adult Adult Spleen Hematopoietic System
63074 63074 SRR13587388 SRX9982075 SRS8153594 SRP303929 PRJNA698005 Danio rerio Raw sequence reads PRJNA698005 Whole Genome Sequencing Danio rerio Raw RNA sequence reads       Model organism or animal sample from Danio rerio The spleen of Danio rerio   isolate:river|age:adult|sex:not collected|tissue:spleen|BioSampleModel:Model organism or animal                 10ZS 10ZS 10ZS The spleen experiment repeat 1 of Gobiocypris rarus     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP303929     10ZS_1.fq.gz 10ZS_2.fq.gz fastq fastq 8391962700.0 55946418.0 10ZS 1.fq.gz 0:150 1:150 A:2326501009;C:1860778012;G:1850272162;T:2354411517;N:0 150 150     2326501009 1860778012 1850272162 2354411517 0 SRX9982075 SRS8153594 SRA1189624 Center for Ecological and Environmental Sciences|Northwestern Polytechnical University Center for Ecological and Environmental Sciences 1 0.907   0.10692   0.72809   0.50685   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2021-01-30 Adult Adult Spleen Hematopoietic System
63075 63075 SRR13587389 SRX9982074 SRS8153594 SRP303929 PRJNA698005 Danio rerio Raw sequence reads PRJNA698005 Whole Genome Sequencing Danio rerio Raw RNA sequence reads       Model organism or animal sample from Danio rerio The spleen of Danio rerio   isolate:river|age:adult|sex:not collected|tissue:spleen|BioSampleModel:Model organism or animal                 10Z S 10Z S 10Z S The spleen control repeat 1 of Gobiocypris rarus     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ BGISEQ-500   SRP303929     10Z_S_1.fq.gz 10Z_S_2.fq.gz fastq fastq 8375904900.0 55839366.0 10Z S 1.fq.gz 0:150 1:150 A:2357505118;C:1814876503;G:1806400464;T:2396638627;N:484188 150 150     2357505118 1814876503 1806400464 2396638627 484188 SRX9982074 SRS8153594 SRA1189624 Center for Ecological and Environmental Sciences|Northwestern Polytechnical University Center for Ecological and Environmental Sciences 1 0.89619   0.12161   0.73878   0.52421   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2021-01-30 Adult Adult Spleen Hematopoietic System
65384 65384 SRR15090129 SRX11400004 SRS9443139 SRP327684 PRJNA745176 5 aminolevulinic acid alleviates alpha cypermethrin toxicity in the liver intestine axis in zebrafish PRJNA745176 Other Transcriptome sequencing of liver tissue shows that ALA rescues the differential gene expression on the oxidation reduction heme metabolism and complement activation pathways associated with alpha CP toxicity.         a CP 2   isolate:Zebrafish Wildtype Lines|age:3 month|sex:not collected|tissue:liver|treatment:α cypermethrin α CP single treatment|replicate:biological replicate 2|BioSampleModel:Model organism or animal                 RNA seq of Danio rerio:liver with cypermethrin CP single treatment CP2 CP2 Transcriptome sequencing of liver tissue isolated from Danio rerio with cypermethrin CP single treatment     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ MGISEQ-2000RS   SRP327684     CP2.1.fq.gz CP2.2.fq.gz fastq fastq 6816619800.0 45444132.0 CP2.1.fq.gz 0:150 1:150 A:1891684962;C:1501309861;G:1520270555;T:1903228215;N:126207 150 150     1891684962 1501309861 1520270555 1903228215 126207 SRX11400004 SRS9443139 SRA1257080 China Agricultural University|Department of Applied Chemistry, College of Scienc China Agricultural University 1 0.90339   0.05682   0.74272   0.4834   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2021-07-09 Adult Adult Liver Liver and Biliary System
65385 65385 SRR15090130 SRX11400003 SRS9443138 SRP327684 PRJNA745176 5 aminolevulinic acid alleviates alpha cypermethrin toxicity in the liver intestine axis in zebrafish PRJNA745176 Other Transcriptome sequencing of liver tissue shows that ALA rescues the differential gene expression on the oxidation reduction heme metabolism and complement activation pathways associated with alpha CP toxicity.         a CP 1   isolate:Zebrafish Wildtype Lines|age:3 month|sex:not collected|tissue:liver|treatment:α cypermethrin α CP single treatment|replicate:biological replicate 1|BioSampleModel:Model organism or animal                 RNA seq of Danio rerio:liver with cypermethrin CP single treatment CP1 CP1 Transcriptome sequencing of liver tissue isolated from Danio rerio with cypermethrin CP single treatment     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ MGISEQ-2000RS   SRP327684     CP1.1.fq.gz CP1.2.fq.gz fastq fastq 6801338100.0 45342254.0 CP1.1.fq.gz 0:150 1:150 A:1867686743;C:1516132586;G:1535971522;T:1881429395;N:117854 150 150     1867686743 1516132586 1535971522 1881429395 117854 SRX11400003 SRS9443138 SRA1257080 China Agricultural University|Department of Applied Chemistry, College of Scienc China Agricultural University 1 0.90967   0.04288   0.7433   0.51144   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2021-07-09 Adult Adult Liver Liver and Biliary System
65386 65386 SRR15090131 SRX11400002 SRS9443137 SRP327684 PRJNA745176 5 aminolevulinic acid alleviates alpha cypermethrin toxicity in the liver intestine axis in zebrafish PRJNA745176 Other Transcriptome sequencing of liver tissue shows that ALA rescues the differential gene expression on the oxidation reduction heme metabolism and complement activation pathways associated with alpha CP toxicity.         a CP+ALA 2   isolate:Zebrafish Wildtype Lines|age:3 month|sex:not collected|tissue:liver|treatment:α cypermethrin α CP + 5 aminolevulinic acid ALA co treatment|replicate:biological replicate 2|BioSampleModel:Model organism or animal                 RNA seq of Danio rerio:liver with cypermethrin CP + 5 aminolevulinic acid ALA co treatment CP.ALA2 CP.ALA2 Transcriptome sequencing of liver tissue isolated from Danio rerio with cypermethrin CP + 5 aminolevulinic acid ALA co treatment     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ MGISEQ-2000RS   SRP327684     CP.ALA2.1.fq.gz CP.ALA2.2.fq.gz fastq fastq 6826417800.0 45509452.0 CP.ALA2.1.fq.gz 0:150 1:150 A:1880324963;C:1518162498;G:1528544942;T:1899329442;N:55955 150 150     1880324963 1518162498 1528544942 1899329442 55955 SRX11400002 SRS9443137 SRA1257080 China Agricultural University|Department of Applied Chemistry, College of Scienc China Agricultural University 1 0.90511   0.03383   0.75225   0.50503   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2021-07-09 Adult Adult Liver Liver and Biliary System
65387 65387 SRR15090132 SRX11400001 SRS9443136 SRP327684 PRJNA745176 5 aminolevulinic acid alleviates alpha cypermethrin toxicity in the liver intestine axis in zebrafish PRJNA745176 Other Transcriptome sequencing of liver tissue shows that ALA rescues the differential gene expression on the oxidation reduction heme metabolism and complement activation pathways associated with alpha CP toxicity.         a CP+ALA 1   isolate:Zebrafish Wildtype Lines|age:3 month|sex:not collected|tissue:liver|treatment:α cypermethrin α CP + 5 aminolevulinic acid ALA co treatment|replicate:biological replicate 1|BioSampleModel:Model organism or animal                 RNA seq of Danio rerio:liver with cypermethrin CP + 5 aminolevulinic acid ALA co treatment CP.ALA1 CP.ALA1 Transcriptome sequencing of liver tissue isolated from Danio rerio with cypermethrin CP + 5 aminolevulinic acid ALA co treatment     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ MGISEQ-2000RS   SRP327684     CP.ALA1.1.fq.gz CP.ALA1.2.fq.gz fastq fastq 6787614000.0 45250760.0 CP.ALA1.1.fq.gz 0:150 1:150 A:1883241447;C:1496341973;G:1511662052;T:1896312396;N:56132 150 150     1883241447 1496341973 1511662052 1896312396 56132 SRX11400001 SRS9443136 SRA1257080 China Agricultural University|Department of Applied Chemistry, College of Scienc China Agricultural University 1 0.89741   0.03801   0.74943   0.50457   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2021-07-09 Adult Adult Liver Liver and Biliary System
65388 65388 SRR15090133 SRX11400000 SRS9443135 SRP327684 PRJNA745176 5 aminolevulinic acid alleviates alpha cypermethrin toxicity in the liver intestine axis in zebrafish PRJNA745176 Other Transcriptome sequencing of liver tissue shows that ALA rescues the differential gene expression on the oxidation reduction heme metabolism and complement activation pathways associated with alpha CP toxicity.         Control 2   isolate:Zebrafish Wildtype Lines|age:3 month|sex:not collected|tissue:liver|treatment:Control treatment|replicate:biological replicate 2|BioSampleModel:Model organism or animal                 RNA seq of Danio rerio:liver with Control treatment CK 2 CK 2 Transcriptome sequencing of liver tissue isolated from Danio rerio with untreatment     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ MGISEQ-2000RS   SRP327684     CK2.1.fq.gz CK2.2.fq.gz fastq fastq 4937307600.0 32915384.0 CK2.1.fq.gz 0:150 1:150 A:1353639761;C:1104257332;G:1111219864;T:1368151010;N:39633 150 150     1353639761 1104257332 1111219864 1368151010 39633 SRX11400000 SRS9443135 SRA1257080 China Agricultural University|Department of Applied Chemistry, College of Scienc China Agricultural University 1 0.90129   0.03238   0.75406   0.49273   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2021-07-09 Adult Adult Liver Liver and Biliary System
65389 65389 SRR15090134 SRX11399999 SRS9443134 SRP327684 PRJNA745176 5 aminolevulinic acid alleviates alpha cypermethrin toxicity in the liver intestine axis in zebrafish PRJNA745176 Other Transcriptome sequencing of liver tissue shows that ALA rescues the differential gene expression on the oxidation reduction heme metabolism and complement activation pathways associated with alpha CP toxicity.         Control 1   isolate:Zebrafish Wildtype Lines|age:3 month|sex:not collected|tissue:liver|treatment:Control treatment|replicate:biological replicate 1|BioSampleModel:Model organism or animal                 RNA seq of Danio rerio:liver with Control treatment CK 1 CK 1 Transcriptome sequencing of liver tissue isolated from Danio rerio with untreatment     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED BGISEQ MGISEQ-2000RS   SRP327684     CK1.1.fq.gz CK1.2.fq.gz fastq fastq 5002504200.0 33350028.0 CK1.1.fq.gz 0:150 1:150 A:1371483028;C:1118930644;G:1125887754;T:1386162333;N:40441 150 150     1371483028 1118930644 1125887754 1386162333 40441 SRX11399999 SRS9443134 SRA1257080 China Agricultural University|Department of Applied Chemistry, College of Scienc China Agricultural University 1 0.90179   0.03287   0.75349   0.49689   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2021-07-09 Adult Adult Liver Liver and Biliary System
72445 72445 SRR22540104 SRX18504097 SRS15974727 SRP411489 PRJNA908883 Zebrafish PFHxS exposure RNA seq PRJNA908883 Other RAN seq of zebrafish embryos post 5 days PFHxS exposure       Model organism or animal sample from Danio rerio Treatment 3   strain:AB|dev stage:5dpf|sex:not applicable|tissue:whole embryo|BioSampleModel:Model organism or animal                 RNA seq of zebrafish embryo T3/ T3/ effect of pfhxs     RNA-Seq TRANSCRIPTOMIC RANDOM SINGLE BGISEQ BGISEQ-500   SRP411489     T3.AddRG.Reorder.Sort.bam bam 4395695600.0 21978478.0 T3.AddRG.Reorder.Sort.bam 0:100 1:100 A:1142519361;C:1049796532;G:1054171464;T:1149208243;N:0 100 100     1142519361 1049796532 1054171464 1149208243 0 SRX18504097 SRS15974727 SRA1553988 Dr. William TSE/ Kyushu University|Faculty of Agriculture Dr. William TSE/ Kyushu University 2 0.95843 0.96189 0.05928 0.05837 0.66996 0.67022 0.48134 0.48129 100 100 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   Japan 2022-12-05 Larval Larval Whole Organism All anatomical structures
72446 72446 SRR22540105 SRX18504096 SRS15974726 SRP411489 PRJNA908883 Zebrafish PFHxS exposure RNA seq PRJNA908883 Other RAN seq of zebrafish embryos post 5 days PFHxS exposure       Model organism or animal sample from Danio rerio Treatment 2   strain:AB|dev stage:5dpf|sex:not applicable|tissue:whole embryo|BioSampleModel:Model organism or animal                 RNA seq of zebrafish embryo T2/ T2/ effect of pfhxs     RNA-Seq TRANSCRIPTOMIC RANDOM SINGLE BGISEQ BGISEQ-500   SRP411489     T2.AddRG.Reorder.Sort.bam bam 4614912600.0 23074563.0 T2.AddRG.Reorder.Sort.bam 0:100 1:100 A:1188643000;C:1115164590;G:1120634369;T:1190470641;N:0 100 100     1188643000 1115164590 1120634369 1190470641 0 SRX18504096 SRS15974726 SRA1553988 Dr. William TSE/ Kyushu University|Faculty of Agriculture Dr. William TSE/ Kyushu University 2 0.95664 0.96166 0.05002 0.04822 0.68635 0.68554 0.47517 0.46481 100 100 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   Japan 2022-12-05 Larval Larval Whole Organism All anatomical structures
72447 72447 SRR22540106 SRX18504095 SRS15974725 SRP411489 PRJNA908883 Zebrafish PFHxS exposure RNA seq PRJNA908883 Other RAN seq of zebrafish embryos post 5 days PFHxS exposure       Model organism or animal sample from Danio rerio Treatment 1   strain:AB|dev stage:5dpf|sex:not applicable|tissue:whole embryo|BioSampleModel:Model organism or animal                 RNA seq of zebrafish embryo T1/ T1/ effect of pfhxs     RNA-Seq TRANSCRIPTOMIC RANDOM SINGLE BGISEQ BGISEQ-500   SRP411489     T1.AddRG.Reorder.Sort.bam bam 4621886200.0 23109431.0 T1.AddRG.Reorder.Sort.bam 0:100 1:100 A:1193465655;C:1112344935;G:1119903386;T:1196172224;N:0 100 100     1193465655 1112344935 1119903386 1196172224 0 SRX18504095 SRS15974725 SRA1553988 Dr. William TSE/ Kyushu University|Faculty of Agriculture Dr. William TSE/ Kyushu University 2 0.95679 0.96088 0.05344 0.05139 0.67754 0.67598 0.462 0.46124 100 100 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   Japan 2022-12-05 Larval Larval Whole Organism All anatomical structures
72448 72448 SRR22540107 SRX18504094 SRS15974724 SRP411489 PRJNA908883 Zebrafish PFHxS exposure RNA seq PRJNA908883 Other RAN seq of zebrafish embryos post 5 days PFHxS exposure       Model organism or animal sample from Danio rerio Control 3   strain:AB|dev stage:5dpf|sex:not applicable|tissue:whole embryo|BioSampleModel:Model organism or animal                 RNA seq of zebrafish embryo C3/ C3/ effect of pfhxs     RNA-Seq TRANSCRIPTOMIC RANDOM SINGLE BGISEQ BGISEQ-500   SRP411489     C3.AddRG.Reorder.Sort.bam bam 4617709400.0 23088547.0 C3.AddRG.Reorder.Sort.bam 0:100 1:100 A:1198527314;C:1106175441;G:1112503633;T:1200503012;N:0 100 100     1198527314 1106175441 1112503633 1200503012 0 SRX18504094 SRS15974724 SRA1553988 Dr. William TSE/ Kyushu University|Faculty of Agriculture Dr. William TSE/ Kyushu University 2 0.95798 0.96137 0.05412 0.05264 0.67223 0.67048 0.46376 0.46409 100 100 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   Japan 2022-12-05 Larval Larval Whole Organism All anatomical structures
72449 72449 SRR22540108 SRX18504093 SRS15974723 SRP411489 PRJNA908883 Zebrafish PFHxS exposure RNA seq PRJNA908883 Other RAN seq of zebrafish embryos post 5 days PFHxS exposure       Model organism or animal sample from Danio rerio Control 2   strain:AB|dev stage:5dpf|sex:not applicable|tissue:whole embryo|BioSampleModel:Model organism or animal                 RNA seq of zebrafish embryo C2/ C2/ effect of pfhxs     RNA-Seq TRANSCRIPTOMIC RANDOM SINGLE BGISEQ BGISEQ-500   SRP411489     C2.AddRG.Reorder.Sort.bam bam 4871905600.0 24359528.0 C2.AddRG.Reorder.Sort.bam 0:100 1:100 A:1257717743;C:1172780375;G:1176887548;T:1264519934;N:0 100 100     1257717743 1172780375 1176887548 1264519934 0 SRX18504093 SRS15974723 SRA1553988 Dr. William TSE/ Kyushu University|Faculty of Agriculture Dr. William TSE/ Kyushu University 2 0.96005 0.96318 0.05702 0.05549 0.66789 0.66697 0.47093 0.46583 100 100 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   Japan 2022-12-05 Larval Larval Whole Organism All anatomical structures
72450 72450 SRR22540109 SRX18504092 SRS15974722 SRP411489 PRJNA908883 Zebrafish PFHxS exposure RNA seq PRJNA908883 Other RAN seq of zebrafish embryos post 5 days PFHxS exposure       Model organism or animal sample from Danio rerio Control 1   strain:AB|dev stage:5dpf|sex:not determined|tissue:whole embryo|BioSampleModel:Model organism or animal                 RNA seq of zebrafish embryo C1/ C1/ effect of pfhxs     RNA-Seq TRANSCRIPTOMIC RANDOM SINGLE BGISEQ BGISEQ-500   SRP411489     C1.AddRG.Reorder.Sort.bam bam 4632466800.0 23162334.0 C1.AddRG.Reorder.Sort.bam 0:100 1:100 A:1194920249;C:1116526905;G:1121202833;T:1199816813;N:0 100 100     1194920249 1116526905 1121202833 1199816813 0 SRX18504092 SRS15974722 SRA1553988 Dr. William TSE/ Kyushu University|Faculty of Agriculture Dr. William TSE/ Kyushu University 2 0.95802 0.96207 0.05444 0.05319 0.67371 0.67247 0.47155 0.46736 100 100 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   Japan 2022-12-05 Larval Larval Whole Organism All anatomical structures
72614 72614 SRR22891482 SRX18849297 SRS16280582 SRP414808 PRJNA915212 Danio rerio strain: 5dpf AB and sf3b4 / Raw sequence reads PRJNA915212 Whole Genome Sequencing A project that using 5dpf AB control and sf3b4 / mutant for RNA sequencing       Model organism or animal sample from Danio rerio Mutant3   strain:sf3b4|dev stage:5dpf|sex:not applicable|tissue:whole embryo|BioSampleModel:Model organism or animal                 RNA seq of zebrafish embryo S3 S3 RNA seq of 5dpf     RNA-Seq TRANSCRIPTOMIC RANDOM SINGLE BGISEQ BGISEQ-500   SRP414808   assembly:GRCz11 S3.AddRG.Reorder.Sort.bam bam 4571163800.0 22855819.0 S3.AddRG.Reorder.Sort.bam 0:100 1:100 A:1194682262;C:1085195756;G:1103429751;T:1187856031;N:0 100 100     1194682262 1085195756 1103429751 1187856031 0 SRX18849297 SRS16280582 SRA1565404 Dr. William TSE/ Kyushu University|Faculty of Agriculture Dr. William TSE/ Kyushu University 2 0.93076 0.93744 0.0661 0.06566 0.67825 0.67675 0.46849 0.46581 100 100 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   Japan 2022-12-26 Larval Larval Whole Organism All anatomical structures
72615 72615 SRR22891483 SRX18849296 SRS16280581 SRP414808 PRJNA915212 Danio rerio strain: 5dpf AB and sf3b4 / Raw sequence reads PRJNA915212 Whole Genome Sequencing A project that using 5dpf AB control and sf3b4 / mutant for RNA sequencing       Model organism or animal sample from Danio rerio Mutant2   strain:sf3b4|dev stage:5dpf|sex:not applicable|tissue:whole embryo|BioSampleModel:Model organism or animal                 RNA seq of zebrafish embryo S2 S2 RNA seq of 5dpf     RNA-Seq TRANSCRIPTOMIC RANDOM SINGLE BGISEQ BGISEQ-500   SRP414808   assembly:GRCz11 S2.AddRG.Reorder.Sort.bam bam 4600792600.0 23003963.0 S2.AddRG.Reorder.Sort.bam 0:100 1:100 A:1200126269;C:1095166595;G:1110394784;T:1195104952;N:0 100 100     1200126269 1095166595 1110394784 1195104952 0 SRX18849296 SRS16280581 SRA1565404 Dr. William TSE/ Kyushu University|Faculty of Agriculture Dr. William TSE/ Kyushu University 2 0.93762 0.94385 0.06417 0.06338 0.67288 0.67282 0.46354 0.46465 100 100 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   Japan 2022-12-26 Larval Larval Whole Organism All anatomical structures
72616 72616 SRR22891484 SRX18849295 SRS16280580 SRP414808 PRJNA915212 Danio rerio strain: 5dpf AB and sf3b4 / Raw sequence reads PRJNA915212 Whole Genome Sequencing A project that using 5dpf AB control and sf3b4 / mutant for RNA sequencing       Model organism or animal sample from Danio rerio Mutant1   strain:sf3b4|dev stage:5dpf|sex:not applicable|tissue:whole embryo|BioSampleModel:Model organism or animal                 RNA seq of zebrafish embryo S1 S1 RNA seq of 5dpf     RNA-Seq TRANSCRIPTOMIC RANDOM SINGLE BGISEQ BGISEQ-500   SRP414808   assembly:GRCz11 S1.AddRG.Reorder.Sort.bam bam 4597426600.0 22987133.0 S1.AddRG.Reorder.Sort.bam 0:100 1:100 A:1198474483;C:1095576259;G:1111544092;T:1191831766;N:0 100 100     1198474483 1095576259 1111544092 1191831766 0 SRX18849295 SRS16280580 SRA1565404 Dr. William TSE/ Kyushu University|Faculty of Agriculture Dr. William TSE/ Kyushu University 2 0.93381 0.93956 0.06594 0.06432 0.67529 0.67225 0.46816 0.46785 100 100 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   Japan 2022-12-26 Larval Larval Whole Organism All anatomical structures
72617 72617 SRR22891485 SRX18849294 SRS16280579 SRP414808 PRJNA915212 Danio rerio strain: 5dpf AB and sf3b4 / Raw sequence reads PRJNA915212 Whole Genome Sequencing A project that using 5dpf AB control and sf3b4 / mutant for RNA sequencing       Model organism or animal sample from Danio rerio Control3   strain:AB|dev stage:5dpf|sex:not applicable|tissue:whole embryo|BioSampleModel:Model organism or animal                 RNA seq of zebrafish embryo C3 C3 RNA seq of 5dpf     RNA-Seq TRANSCRIPTOMIC RANDOM SINGLE BGISEQ BGISEQ-500   SRP414808   assembly:GRCz11 C3.AddRG.Reorder.Sort.bam bam 4604458600.0 23022293.0 C3.AddRG.Reorder.Sort.bam 0:100 1:100 A:1212479855;C:1086425627;G:1078320217;T:1227232901;N:0 100 100     1212479855 1086425627 1078320217 1227232901 0 SRX18849294 SRS16280579 SRA1565404 Dr. William TSE/ Kyushu University|Faculty of Agriculture Dr. William TSE/ Kyushu University 2 0.9375 0.94189 0.06929 0.06838 0.68097 0.68032 0.46981 0.46746 100 100 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   Japan 2022-12-26 Larval Larval Whole Organism All anatomical structures
72618 72618 SRR22891486 SRX18849293 SRS16280578 SRP414808 PRJNA915212 Danio rerio strain: 5dpf AB and sf3b4 / Raw sequence reads PRJNA915212 Whole Genome Sequencing A project that using 5dpf AB control and sf3b4 / mutant for RNA sequencing       Model organism or animal sample from Danio rerio Control2   strain:AB|dev stage:5dpf|sex:not applicable|tissue:whole embryo|BioSampleModel:Model organism or animal                 RNA seq of zebrafish embryo C2 C2 RNA seq of 5dpf     RNA-Seq TRANSCRIPTOMIC RANDOM SINGLE BGISEQ BGISEQ-500   SRP414808   assembly:GRCz11 C2.AddRG.Reorder.Sort.bam bam 4518373800.0 22591869.0 C2.AddRG.Reorder.Sort.bam 0:100 1:100 A:1177788565;C:1076096675;G:1084632400;T:1179856160;N:0 100 100     1177788565 1076096675 1084632400 1179856160 0 SRX18849293 SRS16280578 SRA1565404 Dr. William TSE/ Kyushu University|Faculty of Agriculture Dr. William TSE/ Kyushu University 2 0.93712 0.94281 0.05459 0.05451 0.67669 0.67543 0.46485 0.46607 100 100 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   Japan 2022-12-26 Larval Larval Whole Organism All anatomical structures
72619 72619 SRR22891487 SRX18849292 SRS16280577 SRP414808 PRJNA915212 Danio rerio strain: 5dpf AB and sf3b4 / Raw sequence reads PRJNA915212 Whole Genome Sequencing A project that using 5dpf AB control and sf3b4 / mutant for RNA sequencing       Model organism or animal sample from Danio rerio Control1   strain:AB|dev stage:5dpf|sex:not applicable|tissue:whole embryo|BioSampleModel:Model organism or animal                 RNA seq of zebrafish embryo C1 C1 RNA seq of 5dpf     RNA-Seq TRANSCRIPTOMIC RANDOM SINGLE BGISEQ BGISEQ-500   SRP414808   assembly:GRCz11 C1.AddRG.Reorder.Sort.bam bam 4546744400.0 22733722.0 C1.AddRG.Reorder.Sort.bam 0:100 1:100 A:1170343546;C:1097144275;G:1111316933;T:1167939646;N:0 100 100     1170343546 1097144275 1111316933 1167939646 0 SRX18849292 SRS16280577 SRA1565404 Dr. William TSE/ Kyushu University|Faculty of Agriculture Dr. William TSE/ Kyushu University 2 0.94204 0.94786 0.05052 0.04964 0.68227 0.68097 0.46172 0.45485 100 100 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   Japan 2022-12-26 Larval Larval Whole Organism All anatomical structures

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;