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30 rows where experiment.library_selection = "PolyA", experiment.library_source = "TRANSCRIPTOMIC" and tissue_curation = "Fin"

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devstage_curation 5

devstage_curation_coarse 4

tissue_curation_coarse 1

tissue_curation 1

  • Fin · 30 ✖

technology 1

experiment.platform 1

experiment.library_strategy 1

experiment.library_source 1

  • TRANSCRIPTOMIC · 30 ✖

experiment.library_selection 1

  • PolyA · 30 ✖

experiment.library_layout 1

Link rowid ▼ run.accession experiment.accession sample.accession study.accession bioproject study.title study.alias study.type study.abstract study.attributes study.PMIDs sample.description sample.title sample.alias sample.centername sample.attributes GEOsample.title GEOsample.dataprocessing GEOsample.source GEOsample.treatmentprotocol GEOsample.extractprotocol GEOsample.growthprotocol GEOsample.characteristics GEOsample.accession experiment.title experiment.alias experiment.library_name experiment.design_description experiment.library_construction_protocol experiment.attributes experiment.library_strategy experiment.library_source experiment.library_selection experiment.library_layout experiment.platform experiment.instrument_model experiment.spot_descriptor experiment.study_ref run.title run.attributes run.filename run.semantic_name run.total_bases run.total_spots run.alias run.read_lengths run.base_counts run.r1_length run.r2_length run.r3_length run.r4_length run.Acount run.Ccount run.Gcount run.Tcount run.Ncount run.experiment run.pool_member submission.accession submission.srasource submission.bioprojectsource seqdetective.n_mates seqdetective.mapping_rate.mate1 seqdetective.mapping_rate.mate2 seqdetective.nofeature_rate.mate1 seqdetective.nofeature_rate.mate2 seqdetective.sparsity.mate1 seqdetective.sparsity.mate2 seqdetective.pos_strand_rate.mate1 seqdetective.pos_strand_rate.mate2 seqdetective.readlen.mate1 seqdetective.readlen.mate2 seqdetective.judgement.mate1 seqdetective.judgement.mate2 seqdetective.judgement.reason platform_family instrument_generation read_bias selection_class prep_kit sc_or_bulk tech_class technology tech_variant submission.bioprojectsource.country earliest_date devstage_curation devstage_curation_coarse tissue_curation tissue_curation_coarse
288 288 DRR224554 DRX214839 DRS236362 DRP008458 PRJDB9741 RNA seq for developing pectoral fin in zebrafish DRP008458 Other From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.       pectoral fin from RIKEN Wild type zebrafish Adult C SAMD00222585   sample name:Adult C                 Illumina NovaSeq 6000 paired end sequencing of SAMD00222585 DRX214839 Adult C 1 Illumina TruSeq Stranded mRNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008458 Illumina NovaSeq 6000 paired end sequencing of SAMD00222585       11727505800.0 58637529.0 DRR224554 0:100 1:100 A:3137648588;C:2705013210;G:3191753451;T:2692963496;N:127055 100 100     3137648588 2705013210 3191753451 2692963496 127055 DRX214839 DRS236362 DRA010086 TOHOKUGL|Laboratory of organ morphogenesis Graduate School of Life Sciences, Tohoku University 2 0.95934 0.93156 0.03853 0.0394 0.72683 0.74625 0.45812 0.47098 100 100 B B biological fallback assumption illumina novaseq_era unknown poly_a trueseq bulk unknown unknown   Japan 2022-04-21 Adult Adult Fin Surface Structure
289 289 DRR224553 DRX214838 DRS236361 DRP008458 PRJDB9741 RNA seq for developing pectoral fin in zebrafish DRP008458 Other From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.       pectoral fin from RIKEN Wild type zebrafish Adult B SAMD00222584   sample name:Adult B                 Illumina NovaSeq 6000 paired end sequencing of SAMD00222584 DRX214838 Adult B 1 Illumina TruSeq Stranded mRNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008458 Illumina NovaSeq 6000 paired end sequencing of SAMD00222584       22010855600.0 110054278.0 DRR224553 0:100 1:100 A:5511440112;C:5498539659;G:5546758172;T:5453879750;N:237907 100 100     5511440112 5498539659 5546758172 5453879750 237907 DRX214838 DRS236361 DRA010086 TOHOKUGL|Laboratory of organ morphogenesis Graduate School of Life Sciences, Tohoku University 2 0.95774 0.95394 0.04568 0.04411 0.70701 0.70881 0.47041 0.47938 100 100 B B biological fallback assumption illumina novaseq_era unknown poly_a trueseq bulk unknown unknown   Japan 2022-04-21 Adult Adult Fin Surface Structure
290 290 DRR224552 DRX214837 DRS236360 DRP008458 PRJDB9741 RNA seq for developing pectoral fin in zebrafish DRP008458 Other From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.       pectoral fin from RIKEN Wild type zebrafish Adult A SAMD00222583   sample name:Adult A                 Illumina NovaSeq 6000 paired end sequencing of SAMD00222583 DRX214837 Adult A 1 Illumina TruSeq Stranded mRNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008458 Illumina NovaSeq 6000 paired end sequencing of SAMD00222583       17683281000.0 88416405.0 DRR224552 0:100 1:100 A:4386756926;C:4479415938;G:4578796094;T:4238125580;N:186462 100 100     4386756926 4479415938 4578796094 4238125580 186462 DRX214837 DRS236360 DRA010086 TOHOKUGL|Laboratory of organ morphogenesis Graduate School of Life Sciences, Tohoku University 2 0.95974 0.95566 0.05237 0.05086 0.74357 0.74742 0.48578 0.49971 100 100 B B biological fallback assumption illumina novaseq_era unknown poly_a trueseq bulk unknown unknown   Japan 2022-04-21 Adult Adult Fin Surface Structure
291 291 DRR224551 DRX214836 DRS236359 DRP008458 PRJDB9741 RNA seq for developing pectoral fin in zebrafish DRP008458 Other From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.       pectoral fin from RIKEN Wild type zebrafish at 42dpf C SAMD00222582   sample name:42dpf C                 Illumina NovaSeq 6000 paired end sequencing of SAMD00222582 DRX214836 42dpf C 1 Illumina TruSeq Stranded mRNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008458 Illumina NovaSeq 6000 paired end sequencing of SAMD00222582       14328721000.0 71643605.0 DRR224551 0:100 1:100 A:3545040254;C:3629416092;G:3695002549;T:3459108561;N:153544 100 100     3545040254 3629416092 3695002549 3459108561 153544 DRX214836 DRS236359 DRA010086 TOHOKUGL|Laboratory of organ morphogenesis Graduate School of Life Sciences, Tohoku University 2 0.9671 0.95979 0.04174 0.04058 0.71867 0.72143 0.44818 0.46122 100 100 B B biological fallback assumption illumina novaseq_era unknown poly_a trueseq bulk unknown unknown   Japan 2022-04-21 Juvenile Juvenile Fin Surface Structure
292 292 DRR224550 DRX214835 DRS236358 DRP008458 PRJDB9741 RNA seq for developing pectoral fin in zebrafish DRP008458 Other From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.       pectoral fin from RIKEN Wild type zebrafish at 42dpf B SAMD00222581   sample name:42dpf B                 Illumina NovaSeq 6000 paired end sequencing of SAMD00222581 DRX214835 42dpf B 1 Illumina TruSeq Stranded mRNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008458 Illumina NovaSeq 6000 paired end sequencing of SAMD00222581       14782437000.0 73912185.0 DRR224550 0:100 1:100 A:3652595601;C:3746189790;G:3788229051;T:3595263949;N:158609 100 100     3652595601 3746189790 3788229051 3595263949 158609 DRX214835 DRS236358 DRA010086 TOHOKUGL|Laboratory of organ morphogenesis Graduate School of Life Sciences, Tohoku University 2 0.96502 0.95776 0.0417 0.0399 0.71311 0.71423 0.46064 0.44469 100 100 B B biological fallback assumption illumina novaseq_era unknown poly_a trueseq bulk unknown unknown   Japan 2022-04-21 Juvenile Juvenile Fin Surface Structure
293 293 DRR224549 DRX214834 DRS236357 DRP008458 PRJDB9741 RNA seq for developing pectoral fin in zebrafish DRP008458 Other From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.       pectoral fin from RIKEN Wild type zebrafish at 42dpf A SAMD00222580   sample name:42dpf A                 Illumina NovaSeq 6000 paired end sequencing of SAMD00222580 DRX214834 42dpf A 1 Illumina TruSeq Stranded mRNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008458 Illumina NovaSeq 6000 paired end sequencing of SAMD00222580       17895751600.0 89478758.0 DRR224549 0:100 1:100 A:4428562207;C:4525140210;G:4573827895;T:4368029340;N:191948 100 100     4428562207 4525140210 4573827895 4368029340 191948 DRX214834 DRS236357 DRA010086 TOHOKUGL|Laboratory of organ morphogenesis Graduate School of Life Sciences, Tohoku University 2 0.96506 0.96043 0.04654 0.0446 0.70956 0.71153 0.49143 0.48957 100 100 B B biological fallback assumption illumina novaseq_era unknown poly_a trueseq bulk unknown unknown   Japan 2022-04-21 Juvenile Juvenile Fin Surface Structure
294 294 DRR224548 DRX214833 DRS236356 DRP008458 PRJDB9741 RNA seq for developing pectoral fin in zebrafish DRP008458 Other From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.       pectoral fin from RIKEN Wild type zebrafish at 28dpf C SAMD00222579   sample name:28dpf C                 Illumina NovaSeq 6000 paired end sequencing of SAMD00222579 DRX214833 28dpf C 1 Illumina TruSeq Stranded mRNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008458 Illumina NovaSeq 6000 paired end sequencing of SAMD00222579       16269568600.0 81347843.0 DRR224548 0:100 1:100 A:3978004953;C:4160626131;G:4174223034;T:3956539398;N:175084 100 100     3978004953 4160626131 4174223034 3956539398 175084 DRX214833 DRS236356 DRA010086 TOHOKUGL|Laboratory of organ morphogenesis Graduate School of Life Sciences, Tohoku University 2 0.9633 0.95842 0.0474 0.04564 0.72184 0.72253 0.47871 0.46471 100 100 B B biological fallback assumption illumina novaseq_era unknown poly_a trueseq bulk unknown unknown   Japan 2022-04-21 Larval Larval Fin Surface Structure
295 295 DRR224547 DRX214832 DRS236355 DRP008458 PRJDB9741 RNA seq for developing pectoral fin in zebrafish DRP008458 Other From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.       pectoral fin from RIKEN Wild type zebrafish at 28dpf B SAMD00222578   sample name:28dpf B                 Illumina NovaSeq 6000 paired end sequencing of SAMD00222578 DRX214832 28dpf B 1 Illumina TruSeq Stranded mRNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008458 Illumina NovaSeq 6000 paired end sequencing of SAMD00222578       19970979800.0 99854899.0 DRR224547 0:100 1:100 A:5064043525;C:4909415172;G:5303813974;T:4693498507;N:208622 100 100     5064043525 4909415172 5303813974 4693498507 208622 DRX214832 DRS236355 DRA010086 TOHOKUGL|Laboratory of organ morphogenesis Graduate School of Life Sciences, Tohoku University 2 0.95486 0.94587 0.05718 0.05404 0.73746 0.74754 0.51956 0.47088 100 100 B B biological fallback assumption illumina novaseq_era unknown poly_a trueseq bulk unknown unknown   Japan 2022-04-21 Larval Larval Fin Surface Structure
296 296 DRR224546 DRX214831 DRS236354 DRP008458 PRJDB9741 RNA seq for developing pectoral fin in zebrafish DRP008458 Other From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.       pectoral fin from RIKEN Wild type zebrafish at 28dpf A SAMD00222577   sample name:28dpf A                 Illumina NovaSeq 6000 paired end sequencing of SAMD00222577 DRX214831 28dpf A 1 Illumina TruSeq Stranded mRNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008458 Illumina NovaSeq 6000 paired end sequencing of SAMD00222577       17870876400.0 89354382.0 DRR224546 0:100 1:100 A:4431724830;C:4512913394;G:4543413766;T:4382632384;N:192026 100 100     4431724830 4512913394 4543413766 4382632384 192026 DRX214831 DRS236354 DRA010086 TOHOKUGL|Laboratory of organ morphogenesis Graduate School of Life Sciences, Tohoku University 2 0.9608 0.95643 0.045 0.04296 0.7236 0.7234 0.50029 0.50287 100 100 B B biological fallback assumption illumina novaseq_era unknown poly_a trueseq bulk unknown unknown   Japan 2022-04-21 Larval Larval Fin Surface Structure
297 297 DRR224545 DRX214830 DRS236353 DRP008458 PRJDB9741 RNA seq for developing pectoral fin in zebrafish DRP008458 Other From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.       pectoral fin from RIKEN Wild type zebrafish at 14dpf C SAMD00222576   sample name:14dpf C                 Illumina NovaSeq 6000 paired end sequencing of SAMD00222576 DRX214830 14dpf C 1 Illumina TruSeq Stranded mRNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008458 Illumina NovaSeq 6000 paired end sequencing of SAMD00222576       16979810200.0 84899051.0 DRR224545 0:100 1:100 A:4241907225;C:4256915446;G:4277991608;T:4202813567;N:182354 100 100     4241907225 4256915446 4277991608 4202813567 182354 DRX214830 DRS236353 DRA010086 TOHOKUGL|Laboratory of organ morphogenesis Graduate School of Life Sciences, Tohoku University 2 0.96662 0.96168 0.03768 0.03562 0.72368 0.72464 0.48494 0.48687 100 100 B B biological fallback assumption illumina novaseq_era unknown poly_a trueseq bulk unknown unknown   Japan 2022-04-21 Larval Larval Fin Surface Structure
298 298 DRR224544 DRX214829 DRS236352 DRP008458 PRJDB9741 RNA seq for developing pectoral fin in zebrafish DRP008458 Other From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.       pectoral fin from RIKEN Wild type zebrafish at 14dpf B SAMD00222575   sample name:14dpf B                 Illumina NovaSeq 6000 paired end sequencing of SAMD00222575 DRX214829 14dpf B 1 Illumina TruSeq Stranded mRNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008458 Illumina NovaSeq 6000 paired end sequencing of SAMD00222575       18273780000.0 91368900.0 DRR224544 0:100 1:100 A:4545336763;C:4589502978;G:4635310325;T:4503435996;N:193938 100 100     4545336763 4589502978 4635310325 4503435996 193938 DRX214829 DRS236352 DRA010086 TOHOKUGL|Laboratory of organ morphogenesis Graduate School of Life Sciences, Tohoku University 2 0.97073 0.96595 0.03063 0.02973 0.73632 0.73758 0.47494 0.46918 100 100 B B biological fallback assumption illumina novaseq_era unknown poly_a trueseq bulk unknown unknown   Japan 2022-04-21 Larval Larval Fin Surface Structure
299 299 DRR224543 DRX214828 DRS236351 DRP008458 PRJDB9741 RNA seq for developing pectoral fin in zebrafish DRP008458 Other From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.       pectoral fin from RIKEN Wild type zebrafish at 14dpf A SAMD00222574   sample name:14dpf A                 Illumina NovaSeq 6000 paired end sequencing of SAMD00222574 DRX214828 14dpf A 1 Illumina TruSeq Stranded mRNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008458 Illumina NovaSeq 6000 paired end sequencing of SAMD00222574       18294607600.0 91473038.0 DRR224543 0:100 1:100 A:4623135433;C:4539347940;G:4561846652;T:4570079366;N:198209 100 100     4623135433 4539347940 4561846652 4570079366 198209 DRX214828 DRS236351 DRA010086 TOHOKUGL|Laboratory of organ morphogenesis Graduate School of Life Sciences, Tohoku University 2 0.96261 0.9592 0.02999 0.02873 0.72699 0.72796 0.4679 0.46591 100 100 B B biological fallback assumption illumina novaseq_era unknown poly_a trueseq bulk unknown unknown   Japan 2022-04-21 Larval Larval Fin Surface Structure
300 300 DRR224542 DRX214827 DRS236350 DRP008458 PRJDB9741 RNA seq for developing pectoral fin in zebrafish DRP008458 Other From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.       pectoral fin from RIKEN Wild type zebrafish at 5dpf C SAMD00222573   sample name:5dpf C                 Illumina NovaSeq 6000 paired end sequencing of SAMD00222573 DRX214827 5dpf C 1 Illumina TruSeq Stranded mRNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008458 Illumina NovaSeq 6000 paired end sequencing of SAMD00222573       18736996000.0 93684980.0 DRR224542 0:100 1:100 A:4647244376;C:4733187951;G:4746515898;T:4609906214;N:141561 100 100     4647244376 4733187951 4746515898 4609906214 141561 DRX214827 DRS236350 DRA010086 TOHOKUGL|Laboratory of organ morphogenesis Graduate School of Life Sciences, Tohoku University 2 0.97229 0.96893 0.042 0.03995 0.74172 0.74328 0.44607 0.44755 100 100 B B biological fallback assumption illumina novaseq_era unknown poly_a trueseq bulk unknown unknown   Japan 2022-04-21 Larval Larval Fin Surface Structure
301 301 DRR224541 DRX214826 DRS236349 DRP008458 PRJDB9741 RNA seq for developing pectoral fin in zebrafish DRP008458 Other From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.       pectoral fin from RIKEN Wild type zebrafish at 5dpf B SAMD00222572   sample name:5dpf B                 Illumina NovaSeq 6000 paired end sequencing of SAMD00222572 DRX214826 5dpf B 1 Illumina TruSeq Stranded mRNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008458 Illumina NovaSeq 6000 paired end sequencing of SAMD00222572       22151021400.0 110755107.0 DRR224541 0:100 1:100 A:5555093734;C:5532777660;G:5592525988;T:5470461779;N:162239 100 100     5555093734 5532777660 5592525988 5470461779 162239 DRX214826 DRS236349 DRA010086 TOHOKUGL|Laboratory of organ morphogenesis Graduate School of Life Sciences, Tohoku University 2 0.96835 0.96645 0.04001 0.03872 0.72865 0.72934 0.46355 0.46428 100 100 B B biological fallback assumption illumina novaseq_era unknown poly_a trueseq bulk unknown unknown   Japan 2022-04-21 Larval Larval Fin Surface Structure
302 302 DRR224540 DRX214825 DRS236348 DRP008458 PRJDB9741 RNA seq for developing pectoral fin in zebrafish DRP008458 Other From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.       pectoral fin from RIKEN Wild type zebrafish at 5dpf A SAMD00222571   sample name:5dpf A                 Illumina NovaSeq 6000 paired end sequencing of SAMD00222571 DRX214825 5dpf A 1 Illumina TruSeq Stranded mRNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008458 Illumina NovaSeq 6000 paired end sequencing of SAMD00222571       18219864200.0 91099321.0 DRR224540 0:100 1:100 A:4485880313;C:4629712312;G:4617351502;T:4486786107;N:133966 100 100     4485880313 4629712312 4617351502 4486786107 133966 DRX214825 DRS236348 DRA010086 TOHOKUGL|Laboratory of organ morphogenesis Graduate School of Life Sciences, Tohoku University 2 0.97075 0.96902 0.04498 0.0432 0.72971 0.73044 0.45267 0.4604 100 100 B B biological fallback assumption illumina novaseq_era unknown poly_a trueseq bulk unknown unknown   Japan 2022-04-21 Larval Larval Fin Surface Structure
303 303 DRR224539 DRX214824 DRS236347 DRP008458 PRJDB9741 RNA seq for developing pectoral fin in zebrafish DRP008458 Other From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.       pectoral fin bud from gM1116A zebrafish at 48hpf C SAMD00222570   sample name:48hpf C                 Illumina NovaSeq 6000 paired end sequencing of SAMD00222570 DRX214824 48hpf C 1 Illumina TruSeq Stranded mRNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008458 Illumina NovaSeq 6000 paired end sequencing of SAMD00222570       16828182200.0 84140911.0 DRR224539 0:100 1:100 A:3957959900;C:4467368792;G:4483580218;T:3919146988;N:126302 100 100     3957959900 4467368792 4483580218 3919146988 126302 DRX214824 DRS236347 DRA010086 TOHOKUGL|Laboratory of organ morphogenesis Graduate School of Life Sciences, Tohoku University 2 0.97277 0.97115 0.05409 0.05185 0.76717 0.76836 0.46592 0.45571 100 100 B B biological fallback assumption illumina novaseq_era unknown poly_a trueseq bulk unknown unknown   Japan 2022-04-21 Hatching Embryo Fin Surface Structure
304 304 DRR224538 DRX214823 DRS236346 DRP008458 PRJDB9741 RNA seq for developing pectoral fin in zebrafish DRP008458 Other From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.       pectoral fin bud from gM1116A zebrafish at 48hpf B SAMD00222569   sample name:48hpf B                 Illumina NovaSeq 6000 paired end sequencing of SAMD00222569 DRX214823 48hpf B 1 Illumina TruSeq Stranded mRNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008458 Illumina NovaSeq 6000 paired end sequencing of SAMD00222569       22815822200.0 114079111.0 DRR224538 0:100 1:100 A:5651922913;C:5760379580;G:5844694518;T:5558658503;N:166686 100 100     5651922913 5760379580 5844694518 5558658503 166686 DRX214823 DRS236346 DRA010086 TOHOKUGL|Laboratory of organ morphogenesis Graduate School of Life Sciences, Tohoku University 2 0.96814 0.96379 0.03526 0.03362 0.71575 0.71697 0.47605 0.47359 100 100 B B biological fallback assumption illumina novaseq_era unknown poly_a trueseq bulk unknown unknown   Japan 2022-04-21 Hatching Embryo Fin Surface Structure
305 305 DRR224537 DRX214822 DRS236345 DRP008458 PRJDB9741 RNA seq for developing pectoral fin in zebrafish DRP008458 Other From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.       pectoral fin bud from gM1116A zebrafish at 48hpf A SAMD00222568   sample name:48hpf A                 Illumina NovaSeq 6000 paired end sequencing of SAMD00222568 DRX214822 48hpf A 1 Illumina TruSeq Stranded mRNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008458 Illumina NovaSeq 6000 paired end sequencing of SAMD00222568       13993230400.0 69966152.0 DRR224537 0:100 1:100 A:3484590137;C:3511805255;G:3624285719;T:3372446706;N:102583 100 100     3484590137 3511805255 3624285719 3372446706 102583 DRX214822 DRS236345 DRA010086 TOHOKUGL|Laboratory of organ morphogenesis Graduate School of Life Sciences, Tohoku University 2 0.96467 0.96428 0.04367 0.04212 0.72853 0.73125 0.49715 0.49652 100 100 B B biological fallback assumption illumina novaseq_era unknown poly_a trueseq bulk unknown unknown   Japan 2022-04-21 Hatching Embryo Fin Surface Structure
306 306 DRR224536 DRX214821 DRS236344 DRP008458 PRJDB9741 RNA seq for developing pectoral fin in zebrafish DRP008458 Other From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.       pectoral fin bud from gM1116A zebrafish at 40hpf C SAMD00222567   sample name:40hpf C                 Illumina NovaSeq 6000 paired end sequencing of SAMD00222567 DRX214821 40hpf C 1 Illumina TruSeq Stranded mRNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008458 Illumina NovaSeq 6000 paired end sequencing of SAMD00222567       14926054400.0 74630272.0 DRR224536 0:100 1:100 A:3647365116;C:3826172690;G:3866071867;T:3586333511;N:111216 100 100     3647365116 3826172690 3866071867 3586333511 111216 DRX214821 DRS236344 DRA010086 TOHOKUGL|Laboratory of organ morphogenesis Graduate School of Life Sciences, Tohoku University 2 0.96395 0.96168 0.05081 0.04957 0.75489 0.75607 0.51046 0.52135 100 100 B B biological fallback assumption illumina novaseq_era unknown poly_a trueseq bulk unknown unknown   Japan 2022-04-21 Pharyngula Embryo Fin Surface Structure
307 307 DRR224535 DRX214820 DRS236343 DRP008458 PRJDB9741 RNA seq for developing pectoral fin in zebrafish DRP008458 Other From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.       pectoral fin bud from gM1116A zebrafish at 40hpf B SAMD00222566   sample name:40hpf B                 Illumina NovaSeq 6000 paired end sequencing of SAMD00222566 DRX214820 40hpf B 1 Illumina TruSeq Stranded mRNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008458 Illumina NovaSeq 6000 paired end sequencing of SAMD00222566       14413995800.0 72069979.0 DRR224535 0:100 1:100 A:3598207137;C:3642219692;G:3750145663;T:3423315835;N:107473 100 100     3598207137 3642219692 3750145663 3423315835 107473 DRX214820 DRS236343 DRA010086 TOHOKUGL|Laboratory of organ morphogenesis Graduate School of Life Sciences, Tohoku University 2 0.97396 0.97107 0.04686 0.04549 0.7444 0.74968 0.50051 0.49798 100 100 B B biological fallback assumption illumina novaseq_era unknown poly_a trueseq bulk unknown unknown   Japan 2022-04-21 Pharyngula Embryo Fin Surface Structure
308 308 DRR224534 DRX214819 DRS236342 DRP008458 PRJDB9741 RNA seq for developing pectoral fin in zebrafish DRP008458 Other From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.       pectoral fin bud from gM1116A zebrafish at 40hpf A SAMD00222565   sample name:40hpf A                 Illumina NovaSeq 6000 paired end sequencing of SAMD00222565 DRX214819 40hpf A 1 Illumina TruSeq Stranded mRNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008458 Illumina NovaSeq 6000 paired end sequencing of SAMD00222565       14351831800.0 71759159.0 DRR224534 0:100 1:100 A:3552114377;C:3639389412;G:3719404253;T:3440817088;N:106670 100 100     3552114377 3639389412 3719404253 3440817088 106670 DRX214819 DRS236342 DRA010086 TOHOKUGL|Laboratory of organ morphogenesis Graduate School of Life Sciences, Tohoku University 2 0.96606 0.96569 0.04249 0.04107 0.7514 0.75367 0.49762 0.49753 100 100 B B biological fallback assumption illumina novaseq_era unknown poly_a trueseq bulk unknown unknown   Japan 2022-04-21 Pharyngula Embryo Fin Surface Structure
309 309 DRR224533 DRX214818 DRS236341 DRP008458 PRJDB9741 RNA seq for developing pectoral fin in zebrafish DRP008458 Other From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.       pectoral fin bud from gM1116A zebrafish at 32hpf C SAMD00222564   sample name:32hpf C                 Illumina NovaSeq 6000 paired end sequencing of SAMD00222564 DRX214818 32hpf C 1 Illumina TruSeq Stranded mRNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008458 Illumina NovaSeq 6000 paired end sequencing of SAMD00222564       18499667800.0 92498339.0 DRR224533 0:100 1:100 A:4655671152;C:4605325822;G:4688156846;T:4550378341;N:135639 100 100     4655671152 4605325822 4688156846 4550378341 135639 DRX214818 DRS236341 DRA010086 TOHOKUGL|Laboratory of organ morphogenesis Graduate School of Life Sciences, Tohoku University 2 0.9673 0.96864 0.04184 0.04008 0.73087 0.73318 0.48331 0.48043 100 100 B B biological fallback assumption illumina novaseq_era unknown poly_a trueseq bulk unknown unknown   Japan 2022-04-21 Pharyngula Embryo Fin Surface Structure
310 310 DRR224532 DRX214817 DRS236340 DRP008458 PRJDB9741 RNA seq for developing pectoral fin in zebrafish DRP008458 Other From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.       pectoral fin bud from gM1116A zebrafish at 32hpf B SAMD00222563   sample name:32hpf B                 Illumina NovaSeq 6000 paired end sequencing of SAMD00222563 DRX214817 32hpf B 1 Illumina TruSeq Stranded mRNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008458 Illumina NovaSeq 6000 paired end sequencing of SAMD00222563       19952418000.0 99762090.0 DRR224532 0:100 1:100 A:4972665902;C:5012518349;G:5094132814;T:4872951533;N:149402 100 100     4972665902 5012518349 5094132814 4872951533 149402 DRX214817 DRS236340 DRA010086 TOHOKUGL|Laboratory of organ morphogenesis Graduate School of Life Sciences, Tohoku University 2 0.97325 0.97252 0.03729 0.03575 0.71591 0.7163 0.47191 0.47859 100 100 B B biological fallback assumption illumina novaseq_era unknown poly_a trueseq bulk unknown unknown   Japan 2022-04-21 Pharyngula Embryo Fin Surface Structure
311 311 DRR224531 DRX214816 DRS236339 DRP008458 PRJDB9741 RNA seq for developing pectoral fin in zebrafish DRP008458 Other From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.       pectoral fin bud from gM1116A zebrafish at 32hpf A SAMD00222562   sample name:32hpf A                 Illumina NovaSeq 6000 paired end sequencing of SAMD00222562 DRX214816 32hpf A 1 Illumina TruSeq Stranded mRNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008458 Illumina NovaSeq 6000 paired end sequencing of SAMD00222562       16357024800.0 81785124.0 DRR224531 0:100 1:100 A:4049805675;C:4130985751;G:4172952730;T:4003159212;N:121432 100 100     4049805675 4130985751 4172952730 4003159212 121432 DRX214816 DRS236339 DRA010086 TOHOKUGL|Laboratory of organ morphogenesis Graduate School of Life Sciences, Tohoku University 2 0.97046 0.96886 0.03577 0.03489 0.73257 0.73231 0.4825 0.48849 100 100 B B biological fallback assumption illumina novaseq_era unknown poly_a trueseq bulk unknown unknown   Japan 2022-04-21 Pharyngula Embryo Fin Surface Structure
38032 38032 SRR1299129 SRX553173 SRS620472 SRP042111 PRJNA248169 Danio rerio strain:Wild Transcriptome or Gene expression PRJNA248169 Other Differential transcriptome map of Zebrafish Caudal fin     Seven days time post treatment   7DZF   breed:Wild|strain:Wild|age:1 Year|biomaterial provider:Caudal fin tissue|sex:not applicable|tissue:Caudal fin|time point:7 days time point|BioSampleModel:Model organism or animal                 Danio rerio Transcriptome or Gene expression Danio rerioPRJNA248169 6 1 TruSeq adapter were used.     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> SRP042111     7DZF-Danio_rerio_1R.fastq.bz2 7DZF-Danio_rerio_2R.fastq.bz2 fastq fastq 6699100124.0 33163862.0 7DZF 0:101 1:101 A:1884401354;C:1480292513;G:1459626078;T:1874377806;N:402373 101 101     1884401354 1480292513 1459626078 1874377806 402373 SRX553173 SRS620472 SRA166158 CCMB|CCMB CCMB 2 0.92782 0.93012 0.08953 0.09016 0.72512 0.72693 0.50289 0.50368 101 101 B B biological fallback assumption illumina hiseq_era unknown poly_a trueseq bulk unknown unknown   India 2015-05-01 Adult Adult Fin Surface Structure
38033 38033 SRR1299128 SRX553172 SRS620471 SRP042111 PRJNA248169 Danio rerio strain:Wild Transcriptome or Gene expression PRJNA248169 Other Differential transcriptome map of Zebrafish Caudal fin     Three days time post treatment   3DZF   breed:Wild|strain:Wild|age:1 Year|biomaterial provider:Caudal fin tissue|sex:not applicable|tissue:Caudal fin|time point:3e days time point|BioSampleModel:Model organism or animal                 Danio rerio Transcriptome or Gene expression Danio rerioPRJNA248169 5 1 TruSeq adapter were used.     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> SRP042111     3DZF-Danio_rerio_1R.fastq.bz2 3DZF-Danio_rerio_2R.fastq.bz2 fastq fastq 6020171862.0 29802831.0 3DZF 0:101 1:101 A:1658934475;C:1364088259;G:1346830828;T:1649957848;N:360452 101 101     1658934475 1364088259 1346830828 1649957848 360452 SRX553172 SRS620471 SRA166158 CCMB|CCMB CCMB 2 0.93196 0.93157 0.09004 0.09098 0.71906 0.72157 0.48732 0.4861 101 101 B B biological fallback assumption illumina hiseq_era unknown poly_a trueseq bulk unknown unknown   India 2014-05-27 Adult Adult Fin Surface Structure
38034 38034 SRR1299127 SRX553171 SRS620470 SRP042111 PRJNA248169 Danio rerio strain:Wild Transcriptome or Gene expression PRJNA248169 Other Differential transcriptome map of Zebrafish Caudal fin     Two days time post treatment   2DZF   breed:Wild|strain:Wild|age:1 Year|biomaterial provider:Caudal fin tissue|sex:not applicable|tissue:Caudal fin|time point:2 days time point|BioSampleModel:Model organism or animal                 Danio rerio Transcriptome or Gene expression Danio rerioPRJNA248169 4 1 TruSeq adapter were used.     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> SRP042111     2DZF-Danio_rerio_1R.fastq.bz2 2DZF-Danio_rerio_2R.fastq.bz2 fastq fastq 6925437084.0 34284342.0 2DZF 0:101 1:101 A:1948705184;C:1527739911;G:1509464867;T:1939201870;N:325252 101 101     1948705184 1527739911 1509464867 1939201870 325252 SRX553171 SRS620470 SRA166158 CCMB|CCMB CCMB 2 0.92094 0.9222 0.08397 0.08467 0.73322 0.73499 0.49436 0.4896 101 101 B B biological fallback assumption illumina hiseq_era unknown poly_a trueseq bulk unknown unknown   India 2015-05-01 Adult Adult Fin Surface Structure
38035 38035 SRR1299126 SRX553170 SRS620469 SRP042111 PRJNA248169 Danio rerio strain:Wild Transcriptome or Gene expression PRJNA248169 Other Differential transcriptome map of Zebrafish Caudal fin     One day time post treatment   1DZF   breed:Wild|strain:Wild|age:1 Year|biomaterial provider:Caudal fin tissue|sex:not applicable|tissue:Caudal fin|time point:1 day time point|BioSampleModel:Model organism or animal                 Danio rerio Transcriptome or Gene expression Danio rerioPRJNA248169 3 1 TruSeq adapter were used.     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> SRP042111     1DZF-Danio_rerio_2R.fastq.bz2 1DZF-Danio_rerio_1R.fastq.bz2 fastq fastq 6719993388.0 33267294.0 1DZF 0:101 1:101 A:1893609768;C:1482166949;G:1462366567;T:1881531262;N:318842 101 101     1893609768 1482166949 1462366567 1881531262 318842 SRX553170 SRS620469 SRA166158 CCMB|CCMB CCMB 2 0.92967 0.93015 0.08097 0.08125 0.74213 0.74324 0.47392 0.48207 101 101 B B biological fallback assumption illumina hiseq_era unknown poly_a trueseq bulk unknown unknown   India 2014-05-27 Adult Adult Fin Surface Structure
38036 38036 SRR1299125 SRX553169 SRS620468 SRP042111 PRJNA248169 Danio rerio strain:Wild Transcriptome or Gene expression PRJNA248169 Other Differential transcriptome map of Zebrafish Caudal fin     Half day time post treatment   1 2DZF   breed:Wild|strain:Wild|age:1 Year|biomaterial provider:Caudal fin tissue|sex:not applicable|tissue:Caudal fin|time point:Half day time point|BioSampleModel:Model organism or animal                 Danio rerio Transcriptome or Gene expression Danio rerioPRJNA248169 2 1 TruSeq adapter were used.     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> SRP042111     1-2DZF-Danio_rerio_2R.fastq.bz2 1-2DZF-Danio_rerio_1R.fastq.bz2 fastq fastq 6236131678.0 30871939.0 1 2DZF 0:101 1:101 A:1762641472;C:1370283862;G:1350562716;T:1752265045;N:378583 101 101     1762641472 1370283862 1350562716 1752265045 378583 SRX553169 SRS620468 SRA166158 CCMB|CCMB CCMB 2 0.92407 0.92539 0.08396 0.08553 0.74456 0.74716 0.50446 0.51234 101 101 B B biological fallback assumption illumina hiseq_era unknown poly_a trueseq bulk unknown unknown   India 2014-05-27 Adult Adult Fin Surface Structure
38037 38037 SRR1299124 SRX553168 SRS620467 SRP042111 PRJNA248169 Danio rerio strain:Wild Transcriptome or Gene expression PRJNA248169 Other Differential transcriptome map of Zebrafish Caudal fin     Zero day time post treatment   0DZF   breed:Wild|strain:Wild|age:1 Year|biomaterial provider:Caudal fin tissue|sex:not applicable|tissue:Caudal fin|time point:Zero day time point|BioSampleModel:Model organism or animal                 Danio rerio Transcriptome or Gene expression Danio rerioPRJNA248169 1 Truseq adapter were used.     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> SRP042111     0DZF-Danio_rerio_1R.fastq.bz2 0DZF-Danio_rerio_2R.fastq.bz2 fastq fastq 6698814092.0 33162446.0 0DZF 0:101 1:101 A:1835032668;C:1528628655;G:1505878886;T:1828956105;N:317778 101 101     1835032668 1528628655 1505878886 1828956105 317778 SRX553168 SRS620467 SRA166158 CCMB|CCMB CCMB 2 0.92038 0.92069 0.08892 0.08995 0.74511 0.74686 0.44111 0.43423 101 101 B B biological fallback assumption illumina hiseq_era unknown poly_a trueseq bulk unknown unknown   India 2015-05-01 Adult Adult Fin Surface Structure

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;