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run_metadata

46 rows where experiment.library_selection = "PCR" and tissue_curation = "Gonad"

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technology 2

experiment.library_strategy 2

experiment.library_layout 2

devstage_curation_coarse 2

devstage_curation 2

tissue_curation_coarse 1

tissue_curation 1

  • Gonad · 46 ✖

experiment.platform 1

experiment.library_source 1

experiment.library_selection 1

  • PCR · 46 ✖
Link rowid ▼ run.accession experiment.accession sample.accession study.accession bioproject study.title study.alias study.type study.abstract study.attributes study.PMIDs sample.description sample.title sample.alias sample.centername sample.attributes GEOsample.title GEOsample.dataprocessing GEOsample.source GEOsample.treatmentprotocol GEOsample.extractprotocol GEOsample.growthprotocol GEOsample.characteristics GEOsample.accession experiment.title experiment.alias experiment.library_name experiment.design_description experiment.library_construction_protocol experiment.attributes experiment.library_strategy experiment.library_source experiment.library_selection experiment.library_layout experiment.platform experiment.instrument_model experiment.spot_descriptor experiment.study_ref run.title run.attributes run.filename run.semantic_name run.total_bases run.total_spots run.alias run.read_lengths run.base_counts run.r1_length run.r2_length run.r3_length run.r4_length run.Acount run.Ccount run.Gcount run.Tcount run.Ncount run.experiment run.pool_member submission.accession submission.srasource submission.bioprojectsource seqdetective.n_mates seqdetective.mapping_rate.mate1 seqdetective.mapping_rate.mate2 seqdetective.nofeature_rate.mate1 seqdetective.nofeature_rate.mate2 seqdetective.sparsity.mate1 seqdetective.sparsity.mate2 seqdetective.pos_strand_rate.mate1 seqdetective.pos_strand_rate.mate2 seqdetective.readlen.mate1 seqdetective.readlen.mate2 seqdetective.judgement.mate1 seqdetective.judgement.mate2 seqdetective.judgement.reason platform_family instrument_generation read_bias selection_class prep_kit sc_or_bulk tech_class technology tech_variant submission.bioprojectsource.country earliest_date devstage_curation devstage_curation_coarse tissue_curation tissue_curation_coarse
32362 32362 SRR29157958 SRX24679082 SRS21413713 SRP509709 PRJNA1115529 Danio rerio Raw sequence reads of gonadal tissue PRJNA1115529 Whole Genome Sequencing Evaluation of gene expression changes in zebrafish gonads following a full life cycle exposure to the non steroidal anti inflammatory drug naproxen NPX in order to evaluate the main pathways affected     The current study assessed the long term effects of environmentally relevant concentrations of NPX ng/L to low g/L on zebrafish ovary Model organism or animal sample from Danio rerio Ovary NPX   strain:AB|age:4 month|dev stage:Adult|collection date:2021 03|geo loc name:Portugal: Matosinhos|sex:female|tissue:Ovary|BioSampleModel:Model organism or animal                 zebrafish ovary RNA seq from NPX Ovary NPX Ovary NPX The current study assessed the long term effects of environmentally relevant concentrations of NPX ng/L to low g/L on parental zebrafish ovary     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP509709     H4_2.fq.gz H4_1.fq.gz H3_2.fq.gz H3_1.fq.gz H2_2.fq.gz H2_1.fq.gz H1_2.fq.gz H1_1.fq.gz fastq fastq fastq fastq fastq fastq fastq fastq 37288126200.0 124293754.0 H1 1.fq.gz 0:150 1:150 A:9870906480;C:8895442858;G:8761667172;T:9759826428;N:283262 150 150     9870906480 8895442858 8761667172 9759826428 283262 SRX24679082 SRS21413713 SRA1876810 CIIMAR - Interdisciplinary Centre of Marine and Environmental Research|EDEC - Endocrine Disruptors and Emergent Contamina CIIMAR - Interdisciplinary Centre of Marine and Environmental Research 2 0.93451 0.93482 0.01992 0.01985 0.75966 0.75943 0.45469 0.4556 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   Portugal 2024-05-24 Adult Adult Gonad Reproductive System
32363 32363 SRR29157959 SRX24679081 SRS21413712 SRP509709 PRJNA1115529 Danio rerio Raw sequence reads of gonadal tissue PRJNA1115529 Whole Genome Sequencing Evaluation of gene expression changes in zebrafish gonads following a full life cycle exposure to the non steroidal anti inflammatory drug naproxen NPX in order to evaluate the main pathways affected     The current study assessed the long term effects of environmentally relevant concentrations of NPX ng/L to low g/L on zebrafish ovary Model organism or animal sample from Danio rerio Ovary Ctrl   strain:AB|age:4 month|dev stage:Adult|collection date:2021 03|geo loc name:Portugal: Matosinhos|sex:female|tissue:Ovary|BioSampleModel:Model organism or animal                 zebrafish ovary RNA seq from Control Ovary CTRL Ovary CTRL The current study assessed the long term effects of environmentally relevant concentrations of NPX ng/L to low g/L on parental zebrafish ovary     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP509709     D4_2.fq.gz D4_1.fq.gz D3_2.fq.gz D3_1.fq.gz D2_2.fq.gz D2_1.fq.gz D1_2.fq.gz D1_1.fq.gz fastq fastq fastq fastq fastq fastq fastq fastq 48240351600.0 160801172.0 D1 1.fq.gz 0:150 1:150 A:12507813252;C:11711256340;G:11706267844;T:12313668932;N:1345232 150 150     12507813252 11711256340 11706267844 12313668932 1345232 SRX24679081 SRS21413712 SRA1876810 CIIMAR - Interdisciplinary Centre of Marine and Environmental Research|EDEC - Endocrine Disruptors and Emergent Contamina CIIMAR - Interdisciplinary Centre of Marine and Environmental Research 2 0.93217 0.93303 0.01595 0.01634 0.75948 0.75998 0.46158 0.46061 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   Portugal 2024-05-24 Adult Adult Gonad Reproductive System
32364 32364 SRR29157960 SRX24679080 SRS21413711 SRP509709 PRJNA1115529 Danio rerio Raw sequence reads of gonadal tissue PRJNA1115529 Whole Genome Sequencing Evaluation of gene expression changes in zebrafish gonads following a full life cycle exposure to the non steroidal anti inflammatory drug naproxen NPX in order to evaluate the main pathways affected     The current study assessed the long term effects of environmentally relevant concentrations of NPX ng/L to low g/L on zebrafish testis Model organism or animal sample from Danio rerio Testis NPX   strain:AB|age:4 month|dev stage:Adult|collection date:2021 03|geo loc name:Portugal: Matosinhos|sex:male|tissue:Testis|BioSampleModel:Model organism or animal                 zebrafish testis RNA seq from NPX Testis NPX Testis NPX The current study assessed the long term effects of environmentally relevant concentrations of NPX ng/L to low g/L on parental zebrafish testis     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP509709     G4_2.fq.gz G4_1.fq.gz G3_2.fq.gz G3_1.fq.gz G2_2.fq.gz G2_1.fq.gz G1_2.fq.gz G1_1.fq.gz fastq fastq fastq fastq fastq fastq fastq fastq 48293186700.0 160977289.0 G1 1.fq.gz 0:150 1:150 A:12737664564;C:11515099418;G:11506913376;T:12532403181;N:1106161 150 150     12737664564 11515099418 11506913376 12532403181 1106161 SRX24679080 SRS21413711 SRA1876810 CIIMAR - Interdisciplinary Centre of Marine and Environmental Research|EDEC - Endocrine Disruptors and Emergent Contamina CIIMAR - Interdisciplinary Centre of Marine and Environmental Research 2 0.93531 0.93628 0.04883 0.04847 0.66707 0.66728 0.47213 0.47226 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   Portugal 2024-05-24 Adult Adult Gonad Reproductive System
32365 32365 SRR29157961 SRX24679079 SRS21413710 SRP509709 PRJNA1115529 Danio rerio Raw sequence reads of gonadal tissue PRJNA1115529 Whole Genome Sequencing Evaluation of gene expression changes in zebrafish gonads following a full life cycle exposure to the non steroidal anti inflammatory drug naproxen NPX in order to evaluate the main pathways affected     The current study assessed the long term effects of environmentally relevant concentrations of NPX ng/L to low g/L on parental zebrafish testis Model organism or animal sample from Danio rerio Testis CTRL   strain:AB|age:4 month|dev stage:Adult|collection date:2021 03|geo loc name:Portugal: Matosinhos|sex:male|tissue:Testis|BioSampleModel:Model organism or animal                 zebrafish testis RNA seq from Control Testis CTRL Testis CTRL The current study assessed the long term effects of environmentally relevant concentrations of NPX ng/L to low g/L on parental zebrafish testis     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP509709     C4_2.fq.gz C4_1.fq.gz C3_2.fq.gz C3_1.fq.gz C2_2.fq.gz C2_1.fq.gz C1_2.fq.gz C1_1.fq.gz fastq fastq fastq fastq fastq fastq fastq fastq 47457731100.0 158192437.0 C1 1.fq.gz 0:150 1:150 A:12817545225;C:10993554835;G:10941137146;T:12704995076;N:498818 150 150     12817545225 10993554835 10941137146 12704995076 498818 SRX24679079 SRS21413710 SRA1876810 CIIMAR - Interdisciplinary Centre of Marine and Environmental Research|EDEC - Endocrine Disruptors and Emergent Contamina CIIMAR - Interdisciplinary Centre of Marine and Environmental Research 2 0.93023 0.9282 0.0889 0.08851 0.63106 0.63098 0.4869 0.48618 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   Portugal 2024-05-24 Adult Adult Gonad Reproductive System
32476 32476 SRR29270149 SRX24787634 SRS21505104 SRP511487 PRJNA1119569 RNA seq of zebrafish foxl2l mutant PRJNA1119569 Other Bulk seq of zebrafish foxl2l mutant at 15 dpf and 20 dpf. Each time point contain 3 heterozygous and 3 homozygous.         foxl2l Mut 20 1   strain:AB|age:20|collection date:2023 06 10|geo loc name:China|sex:hermaphrodite|tissue:gonad|BioSampleModel:Model organism or animal                 foxl2l Mut 20 1 E10 E10 50 ng of RNA was used to prepare VAHTS RNA seq Library using Universal V6 RNA seq Library Prep Kit for Illumina Vazeme NR604 01     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA NextSeq 500   SRP511487     foxl2l_Mut-20-1_S162_R1.fastq.gz foxl2l_Mut-20-1_S162_R2.fastq.gz fastq fastq 8940963680.0 29605840.0 foxl2l Mut 20 1 S162 R1.fastq.gz 0:151 1:151 A:2232167098;C:2229744850;G:2271326718;T:2207692629;N:32385 151 151     2232167098 2229744850 2271326718 2207692629 32385 SRX24787634 SRS21505104 SRA1887976 Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology Institute of Hydrobiology, Chinese Academy of Sciences                       B B biological fallback assumption illumina nextseq unknown random_priming unknown bulk bulk bulk   China 2024-06-03 Undetermined Undetermined Gonad Reproductive System
32477 32477 SRR29270150 SRX24787633 SRS21505103 SRP511487 PRJNA1119569 RNA seq of zebrafish foxl2l mutant PRJNA1119569 Other Bulk seq of zebrafish foxl2l mutant at 15 dpf and 20 dpf. Each time point contain 3 heterozygous and 3 homozygous.         foxl2l Het 20 3   strain:AB|age:20|collection date:2023 06 09|geo loc name:China|sex:hermaphrodite|tissue:gonad|BioSampleModel:Model organism or animal                 foxl2l Het 20 3 E9 E9 50 ng of RNA was used to prepare VAHTS RNA seq Library using Universal V6 RNA seq Library Prep Kit for Illumina Vazeme NR604 01     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA NextSeq 500   SRP511487     foxl2l_Het-20-3_S161_R1.fastq.gz foxl2l_Het-20-3_S161_R2.fastq.gz fastq fastq 7038409282.0 23305991.0 foxl2l Het 20 3 S161 R1.fastq.gz 0:151 1:151 A:1766863186;C:1740008639;G:1787471686;T:1744039429;N:26342 151 151     1766863186 1740008639 1787471686 1744039429 26342 SRX24787633 SRS21505103 SRA1887976 Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology Institute of Hydrobiology, Chinese Academy of Sciences                       B B biological fallback assumption illumina nextseq unknown random_priming unknown bulk bulk bulk   China 2024-06-03 Undetermined Undetermined Gonad Reproductive System
32478 32478 SRR29270151 SRX24787632 SRS21505102 SRP511487 PRJNA1119569 RNA seq of zebrafish foxl2l mutant PRJNA1119569 Other Bulk seq of zebrafish foxl2l mutant at 15 dpf and 20 dpf. Each time point contain 3 heterozygous and 3 homozygous.         foxl2l Het 20 2   strain:AB|age:20|collection date:2023 06 08|geo loc name:China|sex:hermaphrodite|tissue:gonad|BioSampleModel:Model organism or animal                 foxl2l Het 20 2 E8 E8 50 ng of RNA was used to prepare VAHTS RNA seq Library using Universal V6 RNA seq Library Prep Kit for Illumina Vazeme NR604 01     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA NextSeq 500   SRP511487     foxl2l_Het-20-2_S160_R1.fastq.gz foxl2l_Het-20-2_S160_R2.fastq.gz fastq fastq 6772505832.0 22425516.0 foxl2l Het 20 2 S160 R1.fastq.gz 0:151 1:151 A:1704124986;C:1673138074;G:1713003931;T:1682214009;N:24832 151 151     1704124986 1673138074 1713003931 1682214009 24832 SRX24787632 SRS21505102 SRA1887976 Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology Institute of Hydrobiology, Chinese Academy of Sciences                       B B biological fallback assumption illumina nextseq unknown random_priming unknown bulk bulk bulk   China 2024-06-03 Undetermined Undetermined Gonad Reproductive System
32479 32479 SRR29270152 SRX24787631 SRS21505101 SRP511487 PRJNA1119569 RNA seq of zebrafish foxl2l mutant PRJNA1119569 Other Bulk seq of zebrafish foxl2l mutant at 15 dpf and 20 dpf. Each time point contain 3 heterozygous and 3 homozygous.         foxl2l Het 20 1   strain:AB|age:20|collection date:2023 06 07|geo loc name:China|sex:hermaphrodite|tissue:gonad|BioSampleModel:Model organism or animal                 foxl2l Het 20 1 E7 E7 50 ng of RNA was used to prepare VAHTS RNA seq Library using Universal V6 RNA seq Library Prep Kit for Illumina Vazeme NR604 01     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA NextSeq 500   SRP511487     foxl2l_Het-20-1_S159_R1.fastq.gz foxl2l_Het-20-1_S159_R2.fastq.gz fastq fastq 11685740812.0 38694506.0 foxl2l Het 20 1 S159 R1.fastq.gz 0:151 1:151 A:2939618668;C:2888861085;G:2958173208;T:2899044704;N:43147 151 151     2939618668 2888861085 2958173208 2899044704 43147 SRX24787631 SRS21505101 SRA1887976 Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology Institute of Hydrobiology, Chinese Academy of Sciences                       B B biological fallback assumption illumina nextseq unknown random_priming unknown bulk bulk bulk   China 2024-06-03 Undetermined Undetermined Gonad Reproductive System
32480 32480 SRR29270153 SRX24787630 SRS21505100 SRP511487 PRJNA1119569 RNA seq of zebrafish foxl2l mutant PRJNA1119569 Other Bulk seq of zebrafish foxl2l mutant at 15 dpf and 20 dpf. Each time point contain 3 heterozygous and 3 homozygous.         foxl2l Mut 15 3   strain:AB|age:15|collection date:2023 06 06|geo loc name:China|sex:hermaphrodite|tissue:gonad|BioSampleModel:Model organism or animal                 foxl2l Mut 15 3 E6 E6 50 ng of RNA was used to prepare VAHTS RNA seq Library using Universal V6 RNA seq Library Prep Kit for Illumina Vazeme NR604 01     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA NextSeq 500   SRP511487     foxl2l_Mut-15-3_S158_R1.fastq.gz foxl2l_Mut-15-3_S158_R2.fastq.gz fastq fastq 9503789604.0 31469502.0 foxl2l Mut 15 3 S158 R1.fastq.gz 0:151 1:151 A:2393052443;C:2340958111;G:2411502428;T:2358240313;N:36309 151 151     2393052443 2340958111 2411502428 2358240313 36309 SRX24787630 SRS21505100 SRA1887976 Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology Institute of Hydrobiology, Chinese Academy of Sciences                       B B biological fallback assumption illumina nextseq unknown random_priming unknown bulk bulk bulk   China 2024-06-03 Undetermined Undetermined Gonad Reproductive System
32481 32481 SRR29270154 SRX24787629 SRS21505099 SRP511487 PRJNA1119569 RNA seq of zebrafish foxl2l mutant PRJNA1119569 Other Bulk seq of zebrafish foxl2l mutant at 15 dpf and 20 dpf. Each time point contain 3 heterozygous and 3 homozygous.         foxl2l Mut 15 2   strain:AB|age:15|collection date:2023 06 05|geo loc name:China|sex:hermaphrodite|tissue:gonad|BioSampleModel:Model organism or animal                 foxl2l Mut 15 2 E5 E5 50 ng of RNA was used to prepare VAHTS RNA seq Library using Universal V6 RNA seq Library Prep Kit for Illumina Vazeme NR604 01     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA NextSeq 500   SRP511487     foxl2l_Mut-15-2_S157_R1.fastq.gz foxl2l_Mut-15-2_S157_R2.fastq.gz fastq fastq 7416837026.0 24559063.0 foxl2l Mut 15 2 S157 R1.fastq.gz 0:151 1:151 A:1865711045;C:1830489703;G:1881612508;T:1838995980;N:27790 151 151     1865711045 1830489703 1881612508 1838995980 27790 SRX24787629 SRS21505099 SRA1887976 Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology Institute of Hydrobiology, Chinese Academy of Sciences                       B B biological fallback assumption illumina nextseq unknown random_priming unknown bulk bulk bulk   China 2024-06-03 Undetermined Undetermined Gonad Reproductive System
32482 32482 SRR29270155 SRX24787628 SRS21505098 SRP511487 PRJNA1119569 RNA seq of zebrafish foxl2l mutant PRJNA1119569 Other Bulk seq of zebrafish foxl2l mutant at 15 dpf and 20 dpf. Each time point contain 3 heterozygous and 3 homozygous.         foxl2l Mut 15 1   strain:AB|age:15|collection date:2023 06 04|geo loc name:China|sex:hermaphrodite|tissue:gonad|BioSampleModel:Model organism or animal                 foxl2l Mut 15 1 E4 E4 50 ng of RNA was used to prepare VAHTS RNA seq Library using Universal V6 RNA seq Library Prep Kit for Illumina Vazeme NR604 01     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA NextSeq 500   SRP511487     foxl2l_Mut-15-1_S156_R1.fastq.gz foxl2l_Mut-15-1_S156_R2.fastq.gz fastq fastq 7092721868.0 23485834.0 foxl2l Mut 15 1 S156 R1.fastq.gz 0:151 1:151 A:1764166761;C:1770534219;G:1820397492;T:1737597123;N:26273 151 151     1764166761 1770534219 1820397492 1737597123 26273 SRX24787628 SRS21505098 SRA1887976 Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology Institute of Hydrobiology, Chinese Academy of Sciences                       B B biological fallback assumption illumina nextseq unknown random_priming unknown bulk bulk bulk   China 2024-06-03 Undetermined Undetermined Gonad Reproductive System
32483 32483 SRR29270156 SRX24787627 SRS21505097 SRP511487 PRJNA1119569 RNA seq of zebrafish foxl2l mutant PRJNA1119569 Other Bulk seq of zebrafish foxl2l mutant at 15 dpf and 20 dpf. Each time point contain 3 heterozygous and 3 homozygous.         foxl2l Het 15 3   strain:AB|age:15|collection date:2023 06 03|geo loc name:China|sex:hermaphrodite|tissue:gonad|BioSampleModel:Model organism or animal                 foxl2l Het 15 3 E3 E3 50 ng of RNA was used to prepare VAHTS RNA seq Library using Universal V6 RNA seq Library Prep Kit for Illumina Vazeme NR604 01     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA NextSeq 500   SRP511487     foxl2l_Het-15-3_S155_R1.fastq.gz foxl2l_Het-15-3_S155_R2.fastq.gz fastq fastq 8083606820.0 26766910.0 foxl2l Het 15 3 S155 R1.fastq.gz 0:151 1:151 A:2028557443;C:2001113164;G:2050610840;T:2003295953;N:29420 151 151     2028557443 2001113164 2050610840 2003295953 29420 SRX24787627 SRS21505097 SRA1887976 Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology Institute of Hydrobiology, Chinese Academy of Sciences                       B B biological fallback assumption illumina nextseq unknown random_priming unknown bulk bulk bulk   China 2024-06-03 Undetermined Undetermined Gonad Reproductive System
32484 32484 SRR29270157 SRX24787626 SRS21505096 SRP511487 PRJNA1119569 RNA seq of zebrafish foxl2l mutant PRJNA1119569 Other Bulk seq of zebrafish foxl2l mutant at 15 dpf and 20 dpf. Each time point contain 3 heterozygous and 3 homozygous.         foxl2l Mut 20 3   strain:AB|age:20|collection date:2023 06 12|geo loc name:China|sex:hermaphrodite|tissue:gonad|BioSampleModel:Model organism or animal                 foxl2l Mut 20 3 E12 E12 50 ng of RNA was used to prepare VAHTS RNA seq Library using Universal V6 RNA seq Library Prep Kit for Illumina Vazeme NR604 01     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA NextSeq 500   SRP511487     foxl2l_Mut-20-3_S164_R1.fastq.gz foxl2l_Mut-20-3_S164_R2.fastq.gz fastq fastq 7474861796.0 24751198.0 foxl2l Mut 20 3 S164 R1.fastq.gz 0:151 1:151 A:1878881650;C:1849512621;G:1891142525;T:1855296720;N:28280 151 151     1878881650 1849512621 1891142525 1855296720 28280 SRX24787626 SRS21505096 SRA1887976 Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology Institute of Hydrobiology, Chinese Academy of Sciences                       B B biological fallback assumption illumina nextseq unknown random_priming unknown bulk bulk bulk   China 2024-06-03 Undetermined Undetermined Gonad Reproductive System
32485 32485 SRR29270158 SRX24787625 SRS21505095 SRP511487 PRJNA1119569 RNA seq of zebrafish foxl2l mutant PRJNA1119569 Other Bulk seq of zebrafish foxl2l mutant at 15 dpf and 20 dpf. Each time point contain 3 heterozygous and 3 homozygous.         foxl2l Mut 20 2   strain:AB|age:20|collection date:2023 06 11|geo loc name:China|sex:hermaphrodite|tissue:gonad|BioSampleModel:Model organism or animal                 foxl2l Mut 20 2 E11 E11 50 ng of RNA was used to prepare VAHTS RNA seq Library using Universal V6 RNA seq Library Prep Kit for Illumina Vazeme NR604 01     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA NextSeq 500   SRP511487     foxl2l_Mut-20-2_S163_R1.fastq.gz foxl2l_Mut-20-2_S163_R2.fastq.gz fastq fastq 8203704066.0 27164583.0 foxl2l Mut 20 2 S163 R1.fastq.gz 0:151 1:151 A:2061693689;C:2030126562;G:2072980952;T:2038873198;N:29665 151 151     2061693689 2030126562 2072980952 2038873198 29665 SRX24787625 SRS21505095 SRA1887976 Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology Institute of Hydrobiology, Chinese Academy of Sciences                       B B biological fallback assumption illumina nextseq unknown random_priming unknown bulk bulk bulk   China 2024-06-03 Undetermined Undetermined Gonad Reproductive System
32486 32486 SRR29270159 SRX24787624 SRS21505094 SRP511487 PRJNA1119569 RNA seq of zebrafish foxl2l mutant PRJNA1119569 Other Bulk seq of zebrafish foxl2l mutant at 15 dpf and 20 dpf. Each time point contain 3 heterozygous and 3 homozygous.         foxl2l Het 15 2   strain:AB|age:15|collection date:2023 06 02|geo loc name:China|sex:hermaphrodite|tissue:gonad|BioSampleModel:Model organism or animal                 foxl2l Het 15 2 E2 E2 50 ng of RNA was used to prepare VAHTS RNA seq Library using Universal V6 RNA seq Library Prep Kit for Illumina Vazeme NR604 01     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA NextSeq 500   SRP511487     foxl2l_Het-15-2_S154_R1.fastq.gz foxl2l_Het-15-2_S154_R2.fastq.gz fastq fastq 7868286860.0 26053930.0 foxl2l Het 15 2 S154 R1.fastq.gz 0:151 1:151 A:1972210357;C:1946891859;G:2008091153;T:1941064817;N:28674 151 151     1972210357 1946891859 2008091153 1941064817 28674 SRX24787624 SRS21505094 SRA1887976 Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology Institute of Hydrobiology, Chinese Academy of Sciences                       B B biological fallback assumption illumina nextseq unknown random_priming unknown bulk bulk bulk   China 2024-06-03 Undetermined Undetermined Gonad Reproductive System
32487 32487 SRR29270160 SRX24787623 SRS21505093 SRP511487 PRJNA1119569 RNA seq of zebrafish foxl2l mutant PRJNA1119569 Other Bulk seq of zebrafish foxl2l mutant at 15 dpf and 20 dpf. Each time point contain 3 heterozygous and 3 homozygous.         foxl2l Het 15 1   strain:AB|age:15|collection date:2023 06 01|geo loc name:China|sex:hermaphrodite|tissue:gonad|BioSampleModel:Model organism or animal                 foxl2l Het 15 1 E1 E1 50 ng of RNA was used to prepare VAHTS RNA seq Library using Universal V6 RNA seq Library Prep Kit for Illumina Vazeme NR604 01     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA NextSeq 500   SRP511487     foxl2l_Het-15-1_S153_R1.fastq.gz foxl2l_Het-15-1_S153_R2.fastq.gz fastq fastq 7117391946.0 23567523.0 foxl2l Het 15 1 S153 R1.fastq.gz 0:151 1:151 A:1795668098;C:1752824783;G:1793720116;T:1775153584;N:25365 151 151     1795668098 1752824783 1793720116 1775153584 25365 SRX24787623 SRS21505093 SRA1887976 Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology Institute of Hydrobiology, Chinese Academy of Sciences                       B B biological fallback assumption illumina nextseq unknown random_priming unknown bulk bulk bulk   China 2024-06-03 Undetermined Undetermined Gonad Reproductive System
59491 59491 SRR11922998 SRX8468717 SRS6769371 SRP265917 PRJNA637248 Transcriptome of preovulatory follicles in zebrafish PRJNA637248 Other In our previous study we successfully established an ideal model anovulatory nuclear progesterone receptor npr mutant zebrafish. In order to deciphering the molecular mechanism of ovulation we profiled the transcriptome of preovulatory follicles from npr mutant and wild type zebrafish using RNA sequencing RNA seq.       wild type maturation zebrafish 3 WM3   strain:ABstrain|age:90 dpf stage:adult|sex:female|tissue:follicles|biological replicate:biological replicate 3|BioSampleModel:Model organism or animal                 WM3 WM3 WM3 follicles from wild type zebrafish     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2500   SRP265917   loader:latf load WM3_1.fq.gz WM3_2.fq.gz fastq fastq 5164813350.0 21335821.0 WM3 1.fq.gz 0:121.04 1:121.04 A:1342860052;C:1253209510;G:1217435391;T:1351036532;N:271865 121 121     1342860052 1253209510 1217435391 1351036532 271865 SRX8468717 SRS6769371     Guangdong Provincial People's Hospital 2 0.95699 0.95499 0.02053 0.02124 0.7699 0.77339 0.47535 0.47234 100 100 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2020-06-04 Adult Adult Gonad Reproductive System
59492 59492 SRR11922999 SRX8468716 SRS6769370 SRP265917 PRJNA637248 Transcriptome of preovulatory follicles in zebrafish PRJNA637248 Other In our previous study we successfully established an ideal model anovulatory nuclear progesterone receptor npr mutant zebrafish. In order to deciphering the molecular mechanism of ovulation we profiled the transcriptome of preovulatory follicles from npr mutant and wild type zebrafish using RNA sequencing RNA seq.       wild type maturation zebrafish 2 WM2   strain:ABstrain|age:90 dpf stage:adult|sex:female|tissue:follicles|biological replicate:biological replicate 2|BioSampleModel:Model organism or animal                 WM2 WM2 WM2 follicles from wild type zebrafish     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2500   SRP265917   loader:latf load WM2_2.fq.gz WM2_1.fq.gz fastq fastq 5038968000.0 20965060.0 WM2 1.fq.gz 0:120.18 1:120.18 A:1330786068;C:1205415239;G:1168349899;T:1334149863;N:266931 120 120     1330786068 1205415239 1168349899 1334149863 266931 SRX8468716 SRS6769370     Guangdong Provincial People's Hospital 2 0.96517 0.9637 0.02825 0.029 0.78281 0.78827 0.49178 0.5001 100 100 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2020-06-04 Adult Adult Gonad Reproductive System
59493 59493 SRR11923000 SRX8468715 SRS6769369 SRP265917 PRJNA637248 Transcriptome of preovulatory follicles in zebrafish PRJNA637248 Other In our previous study we successfully established an ideal model anovulatory nuclear progesterone receptor npr mutant zebrafish. In order to deciphering the molecular mechanism of ovulation we profiled the transcriptome of preovulatory follicles from npr mutant and wild type zebrafish using RNA sequencing RNA seq.       wild type maturation zebrafish 1 WM1   strain:ABstrain|age:90 dpf stage:adult|sex:female|tissue:follicles|biological replicate:biological replicate 1|BioSampleModel:Model organism or animal                 WM1 WM1 WM1 follicles from wild type zebrafish     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2500   SRP265917   loader:latf load WM1_1.fq.gz WM1_2.fq.gz fastq fastq 5339065900.0 22561824.0 WM1 1.fq.gz 0:118.32 1:118.32 A:1399978581;C:1284355952;G:1246401251;T:1408044640;N:285476 118 118     1399978581 1284355952 1246401251 1408044640 285476 SRX8468715 SRS6769369     Guangdong Provincial People's Hospital 2 0.95701 0.95537 0.02571 0.02687 0.75842 0.76508 0.48251 0.47803 100 100 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2020-06-04 Adult Adult Gonad Reproductive System
59494 59494 SRR11923001 SRX8468714 SRS6769368 SRP265917 PRJNA637248 Transcriptome of preovulatory follicles in zebrafish PRJNA637248 Other In our previous study we successfully established an ideal model anovulatory nuclear progesterone receptor npr mutant zebrafish. In order to deciphering the molecular mechanism of ovulation we profiled the transcriptome of preovulatory follicles from npr mutant and wild type zebrafish using RNA sequencing RNA seq.       npr mutant maturation zebrafish 3 PM3   strain:AB strain|age:90 dpf stage:adult|sex:female|tissue:follicles|biological replicate:biological replicate 3|BioSampleModel:Model organism or animal                 PM3 PM3 PM3 follicles from npr mutant zebrafish     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2500   SRP265917   loader:latf load PM3_1.fq.gz PM3_2.fq.gz fastq fastq 5183601600.0 21567702.0 PM3 1.fq.gz 0:120.17 1:120.17 A:1353527028;C:1252588420;G:1215683962;T:1361527086;N:275104 120 120     1353527028 1252588420 1215683962 1361527086 275104 SRX8468714 SRS6769368     Guangdong Provincial People's Hospital 2 0.95455 0.95236 0.02612 0.02697 0.7527 0.75692 0.47131 0.47079 100 100 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2020-06-04 Adult Adult Gonad Reproductive System
59495 59495 SRR11923002 SRX8468713 SRS6769367 SRP265917 PRJNA637248 Transcriptome of preovulatory follicles in zebrafish PRJNA637248 Other In our previous study we successfully established an ideal model anovulatory nuclear progesterone receptor npr mutant zebrafish. In order to deciphering the molecular mechanism of ovulation we profiled the transcriptome of preovulatory follicles from npr mutant and wild type zebrafish using RNA sequencing RNA seq.       npr mutant maturation zebrafish 2 PM2   strain:AB strain|age:90 dpf stage:adult|sex:female|tissue:follicles|biological replicate:biological replicate 2|BioSampleModel:Model organism or animal                 PM2 PM2 PM2 follicles from npr mutant zebrafish     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2500   SRP265917   loader:latf load PM2_1.fq.gz PM2_2.fq.gz fastq fastq 5153649800.0 21236251.0 PM2 1.fq.gz 0:121.34 1:121.34 A:1350474539;C:1242376005;G:1205362278;T:1355166672;N:270306 121 121     1350474539 1242376005 1205362278 1355166672 270306 SRX8468713 SRS6769367     Guangdong Provincial People's Hospital 2 0.95919 0.95777 0.02508 0.02567 0.76556 0.77009 0.48104 0.4828 100 100 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2020-06-04 Adult Adult Gonad Reproductive System
59496 59496 SRR11923003 SRX8468712 SRS6769366 SRP265917 PRJNA637248 Transcriptome of preovulatory follicles in zebrafish PRJNA637248 Other In our previous study we successfully established an ideal model anovulatory nuclear progesterone receptor npr mutant zebrafish. In order to deciphering the molecular mechanism of ovulation we profiled the transcriptome of preovulatory follicles from npr mutant and wild type zebrafish using RNA sequencing RNA seq.       npr mutant maturation zebrafish 1 PM1   strain:AB strain|age:90 dpf stage:adult|sex:female|tissue:follicles|biological replicate:biological replicate 1|BioSampleModel:Model organism or animal                 PM1 PM1 PM1 follicles from npr mutant zebrafish     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2500   SRP265917   loader:latf load PM1_2.fq.gz PM1_1.fq.gz fastq fastq 5391889650.0 22984853.0 PM1 1.fq.gz 0:117.29 1:117.29 A:1407914273;C:1304953558;G:1264851959;T:1413882474;N:287386 117 117     1407914273 1304953558 1264851959 1413882474 287386 SRX8468712 SRS6769366     Guangdong Provincial People's Hospital 2 0.95868 0.95745 0.0259 0.02746 0.76002 0.76745 0.47978 0.48306 100 100 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2020-06-04 Adult Adult Gonad Reproductive System
64249 64249 SRR14373546 SRX10725858 SRS8815710 SRP318063 PRJNA726592 GH overexpression on gonadal microRNAome profile in zebrafish males PRJNA726592 Other Evaluate computationally the kinetic parameters as well as to identify and quantify the set of miRNAs of the spermatozoa from gh transgenic gh+ and non transgenic NT zebrafish that may be correlated with low spermatic quality.       gh transgenic 6 GH3   strain:F0104|age:15 month|dev stage:adult|sex:male|tissue:gonadal|biological replicate:6|BioSampleModel:Model organism or animal                 miRNA Seq of Danio rerio: adult male gonad GH3 GH3 NEBNext Small RNA Library Prep Set     miRNA-Seq TRANSCRIPTOMIC PCR SINGLE ILLUMINA Illumina MiSeq   SRP318063     PoolUFPEL-GH6.fastq fastq 20104659.0 394209.0 PoolUFPEL GH6.fastq 0:51 1:0 A:4462767;C:4536250;G:6471518;T:4633666;N:458 51 0     4462767 4536250 6471518 4633666 458 SRX10725858 SRS8815710 SRA1226279 Universidade Federal de Pelotas|CDTec Universidade Federal de Pelotas 1 0.80185   0.21091   0.91547   0.57044   51   B   usable mapping rate illumina miseq unknown random_priming nebnext bulk unknown unknown   Brazil 2021-04-30 Adult Adult Gonad Reproductive System
64250 64250 SRR14373547 SRX10725857 SRS8815709 SRP318063 PRJNA726592 GH overexpression on gonadal microRNAome profile in zebrafish males PRJNA726592 Other Evaluate computationally the kinetic parameters as well as to identify and quantify the set of miRNAs of the spermatozoa from gh transgenic gh+ and non transgenic NT zebrafish that may be correlated with low spermatic quality.       gh transgenic 4 GH2   strain:F0104|age:15 month|dev stage:adult|sex:male|tissue:gonadal|biological replicate:5|BioSampleModel:Model organism or animal                 miRNA Seq of Danio rerio: adult male gonad GH2 GH2 NEBNext Small RNA Library Prep Set     miRNA-Seq TRANSCRIPTOMIC PCR SINGLE ILLUMINA Illumina MiSeq   SRP318063     PoolUFPEL-GH4.fastq fastq 136130934.0 2669234.0 PoolUFPEL GH4.fastq 0:51 1:0 A:31505752;C:32606264;G:41632000;T:30383900;N:3018 51 0     31505752 32606264 41632000 30383900 3018 SRX10725857 SRS8815709 SRA1226279 Universidade Federal de Pelotas|CDTec Universidade Federal de Pelotas 1 0.78619   0.26843   0.87834   0.48728   51   B   usable mapping rate illumina miseq unknown random_priming nebnext bulk unknown unknown   Brazil 2021-04-30 Adult Adult Gonad Reproductive System
64251 64251 SRR14373548 SRX10725856 SRS8815708 SRP318063 PRJNA726592 GH overexpression on gonadal microRNAome profile in zebrafish males PRJNA726592 Other Evaluate computationally the kinetic parameters as well as to identify and quantify the set of miRNAs of the spermatozoa from gh transgenic gh+ and non transgenic NT zebrafish that may be correlated with low spermatic quality.       gh transgenic 3 GH1   strain:F0104|age:15 month|dev stage:adult|sex:male|tissue:gonadal|biological replicate:4|BioSampleModel:Model organism or animal                 miRNA Seq of Danio rerio: adult male gonad GH1 GH1 NEBNext Small RNA Library Prep Set     miRNA-Seq TRANSCRIPTOMIC PCR SINGLE ILLUMINA Illumina MiSeq   SRP318063     PoolUFPEL-GH3.fastq fastq 364152699.0 7140249.0 PoolUFPEL GH3.fastq 0:51 1:0 A:79211373;C:83789471;G:117772711;T:83370974;N:8170 51 0     79211373 83789471 117772711 83370974 8170 SRX10725856 SRS8815708 SRA1226279 Universidade Federal de Pelotas|CDTec Universidade Federal de Pelotas 1 0.80843   0.18707   0.92066   0.59133   51   B   usable mapping rate illumina miseq unknown random_priming nebnext bulk unknown unknown   Brazil 2021-04-30 Adult Adult Gonad Reproductive System
64252 64252 SRR14373549 SRX10725855 SRS8815707 SRP318063 PRJNA726592 GH overexpression on gonadal microRNAome profile in zebrafish males PRJNA726592 Other Evaluate computationally the kinetic parameters as well as to identify and quantify the set of miRNAs of the spermatozoa from gh transgenic gh+ and non transgenic NT zebrafish that may be correlated with low spermatic quality.       Non transgenic 5 NT3   strain:F0104|age:15 month|dev stage:adult|sex:male|tissue:gonadal|biological replicate:3|BioSampleModel:Model organism or animal                 miRNA Seq of Danio rerio: adult male gonad NT3 NT3 NEBNext Small RNA Library Prep Set     miRNA-Seq TRANSCRIPTOMIC PCR SINGLE ILLUMINA Illumina MiSeq   SRP318063     PoolUFPEL-NT5.fastq fastq 234366114.0 4595414.0 PoolUFPEL NT5.fastq 0:51 1:0 A:58011123;C:51898677;G:69581397;T:54869614;N:5303 51 0     58011123 51898677 69581397 54869614 5303 SRX10725855 SRS8815707 SRA1226279 Universidade Federal de Pelotas|CDTec Universidade Federal de Pelotas 1 0.83352   0.35958   0.85928   0.50004   51   B   usable mapping rate illumina miseq unknown random_priming nebnext bulk unknown unknown   Brazil 2021-04-30 Adult Adult Gonad Reproductive System
64253 64253 SRR14373550 SRX10725854 SRS8815706 SRP318063 PRJNA726592 GH overexpression on gonadal microRNAome profile in zebrafish males PRJNA726592 Other Evaluate computationally the kinetic parameters as well as to identify and quantify the set of miRNAs of the spermatozoa from gh transgenic gh+ and non transgenic NT zebrafish that may be correlated with low spermatic quality.       Non transgenic 3 NT2   strain:F0104|age:15 month|dev stage:adult|sex:male|tissue:gonadal|biological replicate:2|BioSampleModel:Model organism or animal                 miRNA Seq of Danio rerio: adult male gonad NT2 NT2 NEBNext Small RNA Library Prep Set     miRNA-Seq TRANSCRIPTOMIC PCR SINGLE ILLUMINA Illumina MiSeq   SRP318063     PoolUFPEL-NT3.fastq fastq 147963750.0 2901250.0 PoolUFPEL NT3.fastq 0:51 1:0 A:37528568;C:33498521;G:41979920;T:34953411;N:3330 51 0     37528568 33498521 41979920 34953411 3330 SRX10725854 SRS8815706 SRA1226279 Universidade Federal de Pelotas|CDTec Universidade Federal de Pelotas 1 0.75277   0.34872   0.86596   0.53154   51   B   usable mapping rate illumina miseq unknown random_priming nebnext bulk unknown unknown   Brazil 2021-04-30 Adult Adult Gonad Reproductive System
64254 64254 SRR14373551 SRX10725853 SRS8815705 SRP318063 PRJNA726592 GH overexpression on gonadal microRNAome profile in zebrafish males PRJNA726592 Other Evaluate computationally the kinetic parameters as well as to identify and quantify the set of miRNAs of the spermatozoa from gh transgenic gh+ and non transgenic NT zebrafish that may be correlated with low spermatic quality.       Non transgenic 1 NT1   strain:F0104|age:15 month|dev stage:adult|sex:male|tissue:gonadal|biological replicate:1|BioSampleModel:Model organism or animal                 miRNA Seq of Danio rerio: adult male gonad NT1 NT1 NEBNext Small RNA Library Prep Set     miRNA-Seq TRANSCRIPTOMIC PCR SINGLE ILLUMINA Illumina MiSeq   SRP318063     PoolUFPEL-NT1.fastq fastq 218363538.0 4281638.0 PoolUFPEL NT1.fastq 0:51 1:0 A:53115431;C:47639482;G:65248144;T:52355651;N:4830 51 0     53115431 47639482 65248144 52355651 4830 SRX10725853 SRS8815705 SRA1226279 Universidade Federal de Pelotas|CDTec Universidade Federal de Pelotas 1 0.83996   0.3606   0.87728   0.50828   51   B   usable mapping rate illumina miseq unknown random_priming nebnext bulk unknown unknown   Brazil 2021-04-30 Adult Adult Gonad Reproductive System
66123 66123 SRR15927834 SRX12217978 SRS10194180 SRP337553 PRJNA764015 Short Term High Hydrostatic Pressure Responses at Gene Expression Level in Zebrafish PRJNA764015 Other the RNA seq data of four tissues of zebrafish treated by high hydrostatic pressure     replicate1   0.1MPa Ovary 1   strain:12|dev stage:adult|sex:female|tissue:Ovary|treatment:control|BioSampleModel:Model organism or animal                 0.1MPa Ovary 1 0.1MPa Ovary 1 0.1MPa Ovary 1 control     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP337553     0.1MPa_Ovary_1_1.fq.gz 0.1MPa_Ovary_1_2.fq.gz fastq fastq 10862543700.0 36208479.0 0.1MPa Ovary 1 1.fq.gz 0:150 1:150 A:2894240495;C:2560777273;G:2531715512;T:2875585409;N:225011 150 150     2894240495 2560777273 2531715512 2875585409 225011 SRX12217978 SRS10194180 SRA1295954 Northwestern Polytechnical University|School of Ecology and Environment Northwestern Polytechnical University 2 0.94988 0.94986 0.02351 0.02382 0.73561 0.73612 0.46584 0.47019 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-17 Adult Adult Gonad Reproductive System
66132 66132 SRR15927798 SRX12217969 SRS10194172 SRP337553 PRJNA764015 Short Term High Hydrostatic Pressure Responses at Gene Expression Level in Zebrafish PRJNA764015 Other the RNA seq data of four tissues of zebrafish treated by high hydrostatic pressure     replicate4   9MPa Ovary 4   strain:45|dev stage:adult|sex:female|tissue:Ovary|treatment:9MPa4h|BioSampleModel:Model organism or animal                 9MPa Ovary 4 9MPa Ovary 4 9MPa Ovary 4 9MPa4h     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP337553     9MPa_Ovary_4_1.fq.gz 9MPa_Ovary_4_2.fq.gz fastq fastq 6603618300.0 22012061.0 9MPa Ovary 4 1.fq.gz 0:150 1:150 A:1779320284;C:1537001315;G:1528659678;T:1758598616;N:38407 150 150     1779320284 1537001315 1528659678 1758598616 38407 SRX12217969 SRS10194172 SRA1295954 Northwestern Polytechnical University|School of Ecology and Environment Northwestern Polytechnical University 2 0.94012 0.93893 0.02784 0.02771 0.75049 0.75053 0.484 0.48443 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-17 Adult Adult Gonad Reproductive System
66133 66133 SRR15927799 SRX12217968 SRS10194171 SRP337553 PRJNA764015 Short Term High Hydrostatic Pressure Responses at Gene Expression Level in Zebrafish PRJNA764015 Other the RNA seq data of four tissues of zebrafish treated by high hydrostatic pressure     replicate3   9MPa Ovary 3   strain:44|dev stage:adult|sex:female|tissue:Ovary|treatment:9MPa4h|BioSampleModel:Model organism or animal                 9MPa Ovary 3 9MPa Ovary 3 9MPa Ovary 3 9MPa4h     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP337553     9MPa_Ovary_3_1.fq.gz 9MPa_Ovary_3_2.fq.gz fastq fastq 6180447600.0 20601492.0 9MPa Ovary 3 1.fq.gz 0:150 1:150 A:1627126589;C:1470012698;G:1465305974;T:1617975959;N:26380 150 150     1627126589 1470012698 1465305974 1617975959 26380 SRX12217968 SRS10194171 SRA1295954 Northwestern Polytechnical University|School of Ecology and Environment Northwestern Polytechnical University 2 0.94824 0.9472 0.02796 0.02788 0.73385 0.73415 0.47694 0.47771 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-17 Adult Adult Gonad Reproductive System
66134 66134 SRR15927800 SRX12217967 SRS10194170 SRP337553 PRJNA764015 Short Term High Hydrostatic Pressure Responses at Gene Expression Level in Zebrafish PRJNA764015 Other the RNA seq data of four tissues of zebrafish treated by high hydrostatic pressure     replicate2   9MPa Ovary 2   strain:43|dev stage:adult|sex:female|tissue:Ovary|treatment:9MPa4h|BioSampleModel:Model organism or animal                 9MPa Ovary 2 9MPa Ovary 2 9MPa Ovary 2 9MPa4h     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP337553     9MPa_Ovary_2_1.fq.gz 9MPa_Ovary_2_2.fq.gz fastq fastq 6476028000.0 21586760.0 9MPa Ovary 2 1.fq.gz 0:150 1:150 A:1700446568;C:1545340159;G:1538537789;T:1691673274;N:30210 150 150     1700446568 1545340159 1538537789 1691673274 30210 SRX12217967 SRS10194170 SRA1295954 Northwestern Polytechnical University|School of Ecology and Environment Northwestern Polytechnical University 2 0.94327 0.94123 0.02374 0.02362 0.73864 0.73959 0.48447 0.48229 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-17 Adult Adult Gonad Reproductive System
66135 66135 SRR15927801 SRX12217966 SRS10194169 SRP337553 PRJNA764015 Short Term High Hydrostatic Pressure Responses at Gene Expression Level in Zebrafish PRJNA764015 Other the RNA seq data of four tissues of zebrafish treated by high hydrostatic pressure     replicate1   9MPa Ovary 1   strain:42|dev stage:adult|sex:female|tissue:Ovary|treatment:9MPa4h|BioSampleModel:Model organism or animal                 9MPa Ovary 1 9MPa Ovary 1 9MPa Ovary 1 9MPa4h     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP337553     9MPa_Ovary_1_1.fq.gz 9MPa_Ovary_1_2.fq.gz fastq fastq 6663274500.0 22210915.0 9MPa Ovary 1 1.fq.gz 0:150 1:150 A:1775158617;C:1569628006;G:1560659846;T:1757795586;N:32445 150 150     1775158617 1569628006 1560659846 1757795586 32445 SRX12217966 SRS10194169 SRA1295954 Northwestern Polytechnical University|School of Ecology and Environment Northwestern Polytechnical University 2 0.94612 0.94504 0.02641 0.02643 0.74201 0.74268 0.48669 0.48583 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-17 Adult Adult Gonad Reproductive System
66149 66149 SRR15927815 SRX12217952 SRS10194155 SRP337553 PRJNA764015 Short Term High Hydrostatic Pressure Responses at Gene Expression Level in Zebrafish PRJNA764015 Other the RNA seq data of four tissues of zebrafish treated by high hydrostatic pressure     replicate4   5MPa Ovary 4   strain:30|dev stage:adult|sex:female|tissue:Ovary|treatment:5MPa4h|BioSampleModel:Model organism or animal                 5MPa Ovary 4 5MPa Ovary 4 5MPa Ovary 4 5MPa4h     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP337553     5MPa_Ovary_4_1.fq.gz 5MPa_Ovary_4_2.fq.gz fastq fastq 6309642000.0 21032140.0 5MPa Ovary 4 1.fq.gz 0:150 1:150 A:1656235570;C:1505169076;G:1498911945;T:1649295121;N:30288 150 150     1656235570 1505169076 1498911945 1649295121 30288 SRX12217952 SRS10194155 SRA1295954 Northwestern Polytechnical University|School of Ecology and Environment Northwestern Polytechnical University 2 0.94431 0.94311 0.02621 0.02568 0.73034 0.73074 0.48008 0.47526 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-17 Adult Adult Gonad Reproductive System
66150 66150 SRR15927816 SRX12217951 SRS10194154 SRP337553 PRJNA764015 Short Term High Hydrostatic Pressure Responses at Gene Expression Level in Zebrafish PRJNA764015 Other the RNA seq data of four tissues of zebrafish treated by high hydrostatic pressure     replicate3   5MPa Ovary 3   strain:29|dev stage:adult|sex:female|tissue:Ovary|treatment:5MPa4h|BioSampleModel:Model organism or animal                 5MPa Ovary 3 5MPa Ovary 3 5MPa Ovary 3 5MPa4h     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP337553     5MPa_Ovary_3_1.fq.gz 5MPa_Ovary_3_2.fq.gz fastq fastq 6453043800.0 21510146.0 5MPa Ovary 3 1.fq.gz 0:150 1:150 A:1727465382;C:1511929423;G:1503545573;T:1710073006;N:30416 150 150     1727465382 1511929423 1503545573 1710073006 30416 SRX12217951 SRS10194154 SRA1295954 Northwestern Polytechnical University|School of Ecology and Environment Northwestern Polytechnical University 2 0.94329 0.94219 0.02613 0.02608 0.74921 0.75024 0.48417 0.48323 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-17 Adult Adult Gonad Reproductive System
66151 66151 SRR15927817 SRX12217950 SRS10194152 SRP337553 PRJNA764015 Short Term High Hydrostatic Pressure Responses at Gene Expression Level in Zebrafish PRJNA764015 Other the RNA seq data of four tissues of zebrafish treated by high hydrostatic pressure     replicate2   5MPa Ovary 2   strain:28|dev stage:adult|sex:female|tissue:Ovary|treatment:5MPa4h|BioSampleModel:Model organism or animal                 5MPa Ovary 2 5MPa Ovary 2 5MPa Ovary 2 5MPa4h     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP337553     5MPa_Ovary_2_1.fq.gz 5MPa_Ovary_2_2.fq.gz fastq fastq 6538194000.0 21793980.0 5MPa Ovary 2 1.fq.gz 0:150 1:150 A:1722214303;C:1557609494;G:1549380059;T:1708960043;N:30101 150 150     1722214303 1557609494 1549380059 1708960043 30101 SRX12217950 SRS10194152 SRA1295954 Northwestern Polytechnical University|School of Ecology and Environment Northwestern Polytechnical University 2 0.93911 0.93965 0.02225 0.02225 0.74631 0.74726 0.48604 0.48641 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-17 Adult Adult Gonad Reproductive System
66152 66152 SRR15927818 SRX12217949 SRS10194151 SRP337553 PRJNA764015 Short Term High Hydrostatic Pressure Responses at Gene Expression Level in Zebrafish PRJNA764015 Other the RNA seq data of four tissues of zebrafish treated by high hydrostatic pressure     replicate1   5MPa Ovary 1   strain:27|dev stage:adult|sex:female|tissue:Ovary|treatment:5MPa4h|BioSampleModel:Model organism or animal                 5MPa Ovary 1 5MPa Ovary 1 5MPa Ovary 1 5MPa4h     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP337553     5MPa_Ovary_1_1.fq.gz 5MPa_Ovary_1_2.fq.gz fastq fastq 6462261600.0 21540872.0 5MPa Ovary 1 1.fq.gz 0:150 1:150 A:1694181375;C:1543750310;G:1539478533;T:1684821344;N:30038 150 150     1694181375 1543750310 1539478533 1684821344 30038 SRX12217949 SRS10194151 SRA1295954 Northwestern Polytechnical University|School of Ecology and Environment Northwestern Polytechnical University 2 0.94437 0.94308 0.02641 0.02654 0.73099 0.73249 0.4791 0.48649 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-17 Adult Adult Gonad Reproductive System
66165 66165 SRR15927831 SRX12217936 SRS10194138 SRP337553 PRJNA764015 Short Term High Hydrostatic Pressure Responses at Gene Expression Level in Zebrafish PRJNA764015 Other the RNA seq data of four tissues of zebrafish treated by high hydrostatic pressure     replicate4   0.1MPa Ovary 4   strain:15|dev stage:adult|sex:female|tissue:Ovary|treatment:control|BioSampleModel:Model organism or animal                 0.1MPa Ovary 4 0.1MPa Ovary 4 0.1MPa Ovary 4 control     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP337553     0.1MPa_Ovary_4_1.fq.gz 0.1MPa_Ovary_4_2.fq.gz fastq fastq 15343948800.0 51146496.0 0.1MPa Ovary 4 1.fq.gz 0:150 1:150 A:4004450655;C:3680157109;G:3680155153;T:3979133999;N:51884 150 150     4004450655 3680157109 3680155153 3979133999 51884 SRX12217936 SRS10194138 SRA1295954 Northwestern Polytechnical University|School of Ecology and Environment Northwestern Polytechnical University 2 0.93796 0.937 0.02026 0.0202 0.74556 0.74586 0.4783 0.47884 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-17 Adult Adult Gonad Reproductive System
66166 66166 SRR15927832 SRX12217935 SRS10194153 SRP337553 PRJNA764015 Short Term High Hydrostatic Pressure Responses at Gene Expression Level in Zebrafish PRJNA764015 Other the RNA seq data of four tissues of zebrafish treated by high hydrostatic pressure     replicate3   0.1MPa Ovary 3   strain:14|dev stage:adult|sex:female|tissue:Ovary|treatment:control|BioSampleModel:Model organism or animal                 0.1MPa Ovary 3 0.1MPa Ovary 3 0.1MPa Ovary 3 control     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP337553     0.1MPa_Ovary_3_1.fq.gz 0.1MPa_Ovary_3_2.fq.gz fastq fastq 16560024300.0 55200081.0 0.1MPa Ovary 3 1.fq.gz 0:150 1:150 A:4283944324;C:4008319049;G:4000417288;T:4267138730;N:204909 150 150     4283944324 4008319049 4000417288 4267138730 204909 SRX12217935 SRS10194153 SRA1295954 Northwestern Polytechnical University|School of Ecology and Environment Northwestern Polytechnical University 2 0.94132 0.94088 0.01873 0.0187 0.74117 0.74109 0.47368 0.47603 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-17 Adult Adult Gonad Reproductive System
66167 66167 SRR15927833 SRX12217934 SRS10194137 SRP337553 PRJNA764015 Short Term High Hydrostatic Pressure Responses at Gene Expression Level in Zebrafish PRJNA764015 Other the RNA seq data of four tissues of zebrafish treated by high hydrostatic pressure     replicate2   0.1MPa Ovary 2   strain:13|dev stage:adult|sex:female|tissue:Ovary|treatment:control|BioSampleModel:Model organism or animal                 0.1MPa Ovary 2 0.1MPa Ovary 2 0.1MPa Ovary 2 control     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP337553     0.1MPa_Ovary_2_1.fq.gz 0.1MPa_Ovary_2_2.fq.gz fastq fastq 10538992800.0 35129976.0 0.1MPa Ovary 2 1.fq.gz 0:150 1:150 A:2744680055;C:2535542414;G:2530570279;T:2727905123;N:294929 150 150     2744680055 2535542414 2530570279 2727905123 294929 SRX12217934 SRS10194137 SRA1295954 Northwestern Polytechnical University|School of Ecology and Environment Northwestern Polytechnical University 2 0.9332 0.93313 0.02252 0.02272 0.73841 0.73852 0.46992 0.4767 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-17 Adult Adult Gonad Reproductive System
76734 76734 SRR25361306 SRX21100653 SRS18369835 SRP450509 PRJNA996758 Transcriptome analysis of Zebrafish testis PRJNA996758 Other In summary this study obtained whole transcriptome data of mature testis of triploid zebrafish by RNA seq which provided a data platform for the study of reproductive development of triploid fish. Screening and identification of miRNAs related to spermatogenesis in zebrafish.         Zebrafish 3N 3   strain:not collected|age:3 mpf|collection date:not collected|geo loc name:not applicable|sex:male|tissue:testis|replicate:biological replicate 6|BioSampleModel:Model organism or animal                 miRNA Seq of triploid zebrafish: mature testis 3 S06 S06 small RNA Sample Pre Kit     miRNA-Seq TRANSCRIPTOMIC PCR SINGLE ILLUMINA HiSeq X Ten   SRP450509     Zebrafish-3N-3.fq fastq 377566667.0 15350070.0 Zebrafish 3N 3.fq 0:24.60 A:96137966;C:76631652;G:87723617;T:117047567;N:25865 24       96137966 76631652 87723617 117047567 25865 SRX21100653 SRS18369835 SRA1676237 Hunan Normal University|College of Life Sciences Hunan Normal University 1 0.73654   0.40118   0.8564   0.55134   20   B   usable mapping rate illumina hiseq_era full_length random_priming unknown bulk unknown unknown   China 2023-07-20 Adult Adult Gonad Reproductive System
76735 76735 SRR25361307 SRX21100652 SRS18369834 SRP450509 PRJNA996758 Transcriptome analysis of Zebrafish testis PRJNA996758 Other In summary this study obtained whole transcriptome data of mature testis of triploid zebrafish by RNA seq which provided a data platform for the study of reproductive development of triploid fish. Screening and identification of miRNAs related to spermatogenesis in zebrafish.         Zebrafish 3N 2   strain:not collected|age:3 mpf|collection date:not collected|geo loc name:not applicable|sex:male|tissue:testis|replicate:biological replicate 5|BioSampleModel:Model organism or animal                 miRNA Seq of triploid zebrafish: mature testis 2 S05 S05 small RNA Sample Pre Kit     miRNA-Seq TRANSCRIPTOMIC PCR SINGLE ILLUMINA HiSeq X Ten   SRP450509     Zebrafish-3N-2.fq fastq 380484856.0 15447197.0 Zebrafish 3N 2.fq 0:24.63 A:97242128;C:77738745;G:86938175;T:118539773;N:26035 24       97242128 77738745 86938175 118539773 26035 SRX21100652 SRS18369834 SRA1676237 Hunan Normal University|College of Life Sciences Hunan Normal University 1 0.75732   0.36733   0.86003   0.56474   30   B   usable mapping rate illumina hiseq_era full_length random_priming unknown bulk unknown unknown   China 2023-07-20 Adult Adult Gonad Reproductive System
76736 76736 SRR25361308 SRX21100651 SRS18369833 SRP450509 PRJNA996758 Transcriptome analysis of Zebrafish testis PRJNA996758 Other In summary this study obtained whole transcriptome data of mature testis of triploid zebrafish by RNA seq which provided a data platform for the study of reproductive development of triploid fish. Screening and identification of miRNAs related to spermatogenesis in zebrafish.         Zebrafish 3N 1   strain:not collected|age:3 mpf|collection date:not collected|geo loc name:not applicable|sex:male|tissue:testis|replicate:biological replicate 4|BioSampleModel:Model organism or animal                 miRNA Seq of triploid zebrafish: mature testis 1 S04 S04 small RNA Sample Pre Kit     miRNA-Seq TRANSCRIPTOMIC PCR SINGLE ILLUMINA HiSeq X Ten   SRP450509     Zebrafish-3N-1.fq fastq 268097774.0 10780393.0 Zebrafish 3N 1.fq 0:24.87 A:68574209;C:53994512;G:62001426;T:83509528;N:18099 24       68574209 53994512 62001426 83509528 18099 SRX21100651 SRS18369833 SRA1676237 Hunan Normal University|College of Life Sciences Hunan Normal University 1 0.76185   0.39184   0.86038   0.55005   27   B   usable mapping rate illumina hiseq_era full_length random_priming unknown bulk unknown unknown   China 2023-07-20 Adult Adult Gonad Reproductive System
76737 76737 SRR25361309 SRX21100650 SRS18369832 SRP450509 PRJNA996758 Transcriptome analysis of Zebrafish testis PRJNA996758 Other In summary this study obtained whole transcriptome data of mature testis of triploid zebrafish by RNA seq which provided a data platform for the study of reproductive development of triploid fish. Screening and identification of miRNAs related to spermatogenesis in zebrafish.         Zebrafish 2N 3   strain:not collected|age:3 mpf|collection date:not collected|geo loc name:not applicable|sex:male|tissue:testis|replicate:biological replicate 3|BioSampleModel:Model organism or animal                 miRNA Seq of diploid zebrafish: mature testis 3 S03 S03 small RNA Sample Pre Kit     miRNA-Seq TRANSCRIPTOMIC PCR SINGLE ILLUMINA HiSeq X Ten   SRP450509     Zebrafish-2N-3.fq fastq 534146242.0 21237464.0 Zebrafish 2N 3.fq 0:25.15 A:134813196;C:109988603;G:122363487;T:166967106;N:13850 25       134813196 109988603 122363487 166967106 13850 SRX21100650 SRS18369832 SRA1676237 Hunan Normal University|College of Life Sciences Hunan Normal University 1 0.78557   0.41489   0.84682   0.52155   26   B   usable mapping rate illumina hiseq_era full_length random_priming unknown bulk unknown unknown   China 2023-07-20 Adult Adult Gonad Reproductive System
76738 76738 SRR25361310 SRX21100649 SRS18369831 SRP450509 PRJNA996758 Transcriptome analysis of Zebrafish testis PRJNA996758 Other In summary this study obtained whole transcriptome data of mature testis of triploid zebrafish by RNA seq which provided a data platform for the study of reproductive development of triploid fish. Screening and identification of miRNAs related to spermatogenesis in zebrafish.         Zebrafish 2N 2   strain:not collected|age:3 mpf|collection date:not collected|geo loc name:not applicable|sex:male|tissue:testis|replicate:biological replicate 2|BioSampleModel:Model organism or animal                 miRNA Seq of diploid zebrafish: mature testis 2 S02 S02 small RNA Sample Pre Kit     miRNA-Seq TRANSCRIPTOMIC PCR SINGLE ILLUMINA HiSeq X Ten   SRP450509     Zebrafish-2N-2.fq fastq 356097642.0 14145771.0 Zebrafish 2N 2.fq 0:25.17 A:90441485;C:73979402;G:81604410;T:110063163;N:9182 25       90441485 73979402 81604410 110063163 9182 SRX21100649 SRS18369831 SRA1676237 Hunan Normal University|College of Life Sciences Hunan Normal University 1 0.75286   0.42266   0.8561   0.55388   25   B   usable mapping rate illumina hiseq_era full_length random_priming unknown bulk unknown unknown   China 2023-07-20 Adult Adult Gonad Reproductive System
76739 76739 SRR25361311 SRX21100648 SRS18369830 SRP450509 PRJNA996758 Transcriptome analysis of Zebrafish testis PRJNA996758 Other In summary this study obtained whole transcriptome data of mature testis of triploid zebrafish by RNA seq which provided a data platform for the study of reproductive development of triploid fish. Screening and identification of miRNAs related to spermatogenesis in zebrafish.         Zebrafish 2N 1   strain:not collected|age:3 mpf|collection date:not collected|geo loc name:not applicable|sex:male|tissue:testis|replicate:biological replicate 1|BioSampleModel:Model organism or animal                 miRNA Seq of diploid zebrafish: mature testis 1 S01 S01 small RNA Sample Pre Kit     miRNA-Seq TRANSCRIPTOMIC PCR SINGLE ILLUMINA HiSeq X Ten   SRP450509     Zebrafish-2N-1.fq fastq 304073792.0 11993451.0 Zebrafish 2N 1.fq 0:25.35 A:78785751;C:62508430;G:69338558;T:93420600;N:20453 25       78785751 62508430 69338558 93420600 20453 SRX21100648 SRS18369830 SRA1676237 Hunan Normal University|College of Life Sciences Hunan Normal University 1 0.77026   0.38872   0.86032   0.58206   23   B   usable mapping rate illumina hiseq_era full_length random_priming unknown bulk unknown unknown   China 2023-07-20 Adult Adult Gonad Reproductive System

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;