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run_metadata

24 rows where experiment.library_selection = "PCR", technology = "unknown" and tissue_curation_coarse = "Sensory System"

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devstage_curation_coarse 2

devstage_curation 2

tissue_curation_coarse 1

  • Sensory System · 24 ✖

tissue_curation 1

technology 1

  • unknown · 24 ✖

experiment.platform 1

experiment.library_strategy 1

experiment.library_source 1

experiment.library_selection 1

  • PCR · 24 ✖

experiment.library_layout 1

Link rowid ▼ run.accession experiment.accession sample.accession study.accession bioproject study.title study.alias study.type study.abstract study.attributes study.PMIDs sample.description sample.title sample.alias sample.centername sample.attributes GEOsample.title GEOsample.dataprocessing GEOsample.source GEOsample.treatmentprotocol GEOsample.extractprotocol GEOsample.growthprotocol GEOsample.characteristics GEOsample.accession experiment.title experiment.alias experiment.library_name experiment.design_description experiment.library_construction_protocol experiment.attributes experiment.library_strategy experiment.library_source experiment.library_selection experiment.library_layout experiment.platform experiment.instrument_model experiment.spot_descriptor experiment.study_ref run.title run.attributes run.filename run.semantic_name run.total_bases run.total_spots run.alias run.read_lengths run.base_counts run.r1_length run.r2_length run.r3_length run.r4_length run.Acount run.Ccount run.Gcount run.Tcount run.Ncount run.experiment run.pool_member submission.accession submission.srasource submission.bioprojectsource seqdetective.n_mates seqdetective.mapping_rate.mate1 seqdetective.mapping_rate.mate2 seqdetective.nofeature_rate.mate1 seqdetective.nofeature_rate.mate2 seqdetective.sparsity.mate1 seqdetective.sparsity.mate2 seqdetective.pos_strand_rate.mate1 seqdetective.pos_strand_rate.mate2 seqdetective.readlen.mate1 seqdetective.readlen.mate2 seqdetective.judgement.mate1 seqdetective.judgement.mate2 seqdetective.judgement.reason platform_family instrument_generation read_bias selection_class prep_kit sc_or_bulk tech_class technology tech_variant submission.bioprojectsource.country earliest_date devstage_curation devstage_curation_coarse tissue_curation tissue_curation_coarse
66130 66130 SRR15927796 SRX12217971 SRS10194174 SRP337553 PRJNA764015 Short Term High Hydrostatic Pressure Responses at Gene Expression Level in Zebrafish PRJNA764015 Other the RNA seq data of four tissues of zebrafish treated by high hydrostatic pressure     replicate4   0.1MPa Eyes 4   strain:7|dev stage:adult|sex:female|tissue:Eyes|treatment:control|BioSampleModel:Model organism or animal                 0.1MPa Eyes 4 0.1MPa Eyes 4 0.1MPa Eyes 4 control     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP337553     0.1MPa_Eyes_4_1.fq.gz 0.1MPa_Eyes_4_2.fq.gz fastq fastq 12414726300.0 41382421.0 0.1MPa Eyes 4 1.fq.gz 0:150 1:150 A:3387076908;C:2837713999;G:2843295291;T:3346599229;N:40873 150 150     3387076908 2837713999 2843295291 3346599229 40873 SRX12217971 SRS10194174 SRA1295954 Northwestern Polytechnical University|School of Ecology and Environment Northwestern Polytechnical University 2 0.92946 0.92732 0.11597 0.11579 0.6854 0.68609 0.4874 0.4871 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-17 Adult Adult Eye Sensory System
66131 66131 SRR15927797 SRX12217970 SRS10194173 SRP337553 PRJNA764015 Short Term High Hydrostatic Pressure Responses at Gene Expression Level in Zebrafish PRJNA764015 Other the RNA seq data of four tissues of zebrafish treated by high hydrostatic pressure     replicate3   0.1MPa Eyes 3   strain:6|dev stage:adult|sex:female|tissue:Eyes|treatment:control|BioSampleModel:Model organism or animal                 0.1MPa Eyes 3 0.1MPa Eyes 3 0.1MPa Eyes 3 control     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP337553     0.1MPa_Eyes_3_1.fq.gz 0.1MPa_Eyes_3_2.fq.gz fastq fastq 13802842500.0 46009475.0 0.1MPa Eyes 3 1.fq.gz 0:150 1:150 A:3801682273;C:3118636778;G:3121952581;T:3760524244;N:46624 150 150     3801682273 3118636778 3121952581 3760524244 46624 SRX12217970 SRS10194173 SRA1295954 Northwestern Polytechnical University|School of Ecology and Environment Northwestern Polytechnical University 2 0.92752 0.92568 0.12095 0.12072 0.69161 0.69268 0.48898 0.49485 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-17 Adult Adult Eye Sensory System
66137 66137 SRR15927803 SRX12217964 SRS10194167 SRP337553 PRJNA764015 Short Term High Hydrostatic Pressure Responses at Gene Expression Level in Zebrafish PRJNA764015 Other the RNA seq data of four tissues of zebrafish treated by high hydrostatic pressure     replicate2   0.1MPa Eyes 2   strain:5|dev stage:adult|sex:female|tissue:Eyes|treatment:control|BioSampleModel:Model organism or animal                 0.1MPa Eyes 2 0.1MPa Eyes 2 0.1MPa Eyes 2 control     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP337553     0.1MPa_Eyes_2_1.fq.gz 0.1MPa_Eyes_2_2.fq.gz fastq fastq 10953643500.0 36512145.0 0.1MPa Eyes 2 1.fq.gz 0:150 1:150 A:2973758132;C:2516873781;G:2523497855;T:2939470460;N:43272 150 150     2973758132 2516873781 2523497855 2939470460 43272 SRX12217964 SRS10194167 SRA1295954 Northwestern Polytechnical University|School of Ecology and Environment Northwestern Polytechnical University 2 0.93248 0.9313 0.10731 0.10689 0.69325 0.69516 0.4842 0.49126 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-17 Adult Adult Eye Sensory System
66141 66141 SRR15927807 SRX12217960 SRS10194165 SRP337553 PRJNA764015 Short Term High Hydrostatic Pressure Responses at Gene Expression Level in Zebrafish PRJNA764015 Other the RNA seq data of four tissues of zebrafish treated by high hydrostatic pressure     replicate4   9MPa Eyes 4   strain:37|dev stage:adult|sex:female|tissue:Eyes|treatment:9MPa4h|BioSampleModel:Model organism or animal                 9MPa Eyes 4 9MPa Eyes 4 9MPa Eyes 4 9MPa4h     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP337553     9MPa_Eyes_4_1.fq.gz 9MPa_Eyes_4_2.fq.gz fastq fastq 6525576300.0 21751921.0 9MPa Eyes 4 1.fq.gz 0:150 1:150 A:1803835188;C:1472313344;G:1466448077;T:1782949534;N:30157 150 150     1803835188 1472313344 1466448077 1782949534 30157 SRX12217960 SRS10194165 SRA1295954 Northwestern Polytechnical University|School of Ecology and Environment Northwestern Polytechnical University 2 0.93907 0.93845 0.11883 0.11844 0.70644 0.7066 0.50883 0.50778 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-17 Adult Adult Eye Sensory System
66142 66142 SRR15927808 SRX12217959 SRS10194162 SRP337553 PRJNA764015 Short Term High Hydrostatic Pressure Responses at Gene Expression Level in Zebrafish PRJNA764015 Other the RNA seq data of four tissues of zebrafish treated by high hydrostatic pressure     replicate3   9MPa Eyes 3   strain:36|dev stage:adult|sex:female|tissue:Eyes|treatment:9MPa4h|BioSampleModel:Model organism or animal                 9MPa Eyes 3 9MPa Eyes 3 9MPa Eyes 3 9MPa4h     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP337553     9MPa_Eyes_3_1.fq.gz 9MPa_Eyes_3_2.fq.gz fastq fastq 5776357500.0 19254525.0 9MPa Eyes 3 1.fq.gz 0:150 1:150 A:1624892959;C:1277048613;G:1271818658;T:1602572624;N:24646 150 150     1624892959 1277048613 1271818658 1602572624 24646 SRX12217959 SRS10194162 SRA1295954 Northwestern Polytechnical University|School of Ecology and Environment Northwestern Polytechnical University 2 0.93398 0.933 0.13368 0.1327 0.71429 0.71646 0.5096 0.50755 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-17 Adult Adult Eye Sensory System
66143 66143 SRR15927809 SRX12217958 SRS10194161 SRP337553 PRJNA764015 Short Term High Hydrostatic Pressure Responses at Gene Expression Level in Zebrafish PRJNA764015 Other the RNA seq data of four tissues of zebrafish treated by high hydrostatic pressure     replicate2   9MPa Eyes 2   strain:35|dev stage:adult|sex:female|tissue:Eyes|treatment:9MPa4h|BioSampleModel:Model organism or animal                 9MPa Eyes 2 9MPa Eyes 2 9MPa Eyes 2 9MPa4h     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP337553     9MPa_Eyes_2_1.fq.gz 9MPa_Eyes_2_2.fq.gz fastq fastq 5996716200.0 19989054.0 9MPa Eyes 2 1.fq.gz 0:150 1:150 A:1699532231;C:1311740243;G:1309080727;T:1676337870;N:25129 150 150     1699532231 1311740243 1309080727 1676337870 25129 SRX12217958 SRS10194161 SRA1295954 Northwestern Polytechnical University|School of Ecology and Environment Northwestern Polytechnical University 2 0.93593 0.93459 0.12681 0.12634 0.72723 0.72904 0.51528 0.50762 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-17 Adult Adult Eye Sensory System
66144 66144 SRR15927810 SRX12217957 SRS10194160 SRP337553 PRJNA764015 Short Term High Hydrostatic Pressure Responses at Gene Expression Level in Zebrafish PRJNA764015 Other the RNA seq data of four tissues of zebrafish treated by high hydrostatic pressure     replicate1   9MPa Eyes 1   strain:34|dev stage:adult|sex:female|tissue:Eyes|treatment:9MPa4h|BioSampleModel:Model organism or animal                 9MPa Eyes 1 9MPa Eyes 1 9MPa Eyes 1 9MPa4h     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP337553     9MPa_Eyes_1_1.fq.gz 9MPa_Eyes_1_2.fq.gz fastq fastq 6472381200.0 21574604.0 9MPa Eyes 1 1.fq.gz 0:150 1:150 A:1833844487;C:1414376418;G:1409203253;T:1814926080;N:30962 150 150     1833844487 1414376418 1409203253 1814926080 30962 SRX12217957 SRS10194160 SRA1295954 Northwestern Polytechnical University|School of Ecology and Environment Northwestern Polytechnical University 2 0.93949 0.93829 0.1209 0.12017 0.73393 0.73551 0.52613 0.52391 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-17 Adult Adult Eye Sensory System
66148 66148 SRR15927814 SRX12217953 SRS10194156 SRP337553 PRJNA764015 Short Term High Hydrostatic Pressure Responses at Gene Expression Level in Zebrafish PRJNA764015 Other the RNA seq data of four tissues of zebrafish treated by high hydrostatic pressure     replicate1   0.1MPa Eyes 1   strain:4|dev stage:adult|sex:female|tissue:Eyes|treatment:control|BioSampleModel:Model organism or animal                 0.1MPa Eyes 1 0.1MPa Eyes 1 0.1MPa Eyes 1 control     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP337553     0.1MPa_Eyes_1_1.fq.gz 0.1MPa_Eyes_1_2.fq.gz fastq fastq 9621761100.0 32072537.0 0.1MPa Eyes 1 1.fq.gz 0:150 1:150 A:2647037205;C:2171459871;G:2178618221;T:2624602289;N:43514 150 150     2647037205 2171459871 2178618221 2624602289 43514 SRX12217953 SRS10194156 SRA1295954 Northwestern Polytechnical University|School of Ecology and Environment Northwestern Polytechnical University 2 0.92772 0.92613 0.12834 0.12843 0.70345 0.70392 0.47507 0.47875 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-17 Adult Adult Eye Sensory System
66157 66157 SRR15927823 SRX12217944 SRS10194146 SRP337553 PRJNA764015 Short Term High Hydrostatic Pressure Responses at Gene Expression Level in Zebrafish PRJNA764015 Other the RNA seq data of four tissues of zebrafish treated by high hydrostatic pressure     replicate4   5MPa Eyes 4   strain:22|dev stage:adult|sex:female|tissue:Eyes|treatment:5MPa4h|BioSampleModel:Model organism or animal                 5MPa Eyes 4 5MPa Eyes 4 5MPa Eyes 4 5MPa4h     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP337553     5MPa_Eyes_4_1.fq.gz 5MPa_Eyes_4_2.fq.gz fastq fastq 6689208300.0 22297361.0 5MPa Eyes 4 1.fq.gz 0:150 1:150 A:1821531137;C:1533834644;G:1530861059;T:1802950922;N:30538 150 150     1821531137 1533834644 1530861059 1802950922 30538 SRX12217944 SRS10194146 SRA1295954 Northwestern Polytechnical University|School of Ecology and Environment Northwestern Polytechnical University 2 0.93841 0.9377 0.114 0.11367 0.69806 0.69871 0.4851 0.48253 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-17 Adult Adult Eye Sensory System
66158 66158 SRR15927824 SRX12217943 SRS10194145 SRP337553 PRJNA764015 Short Term High Hydrostatic Pressure Responses at Gene Expression Level in Zebrafish PRJNA764015 Other the RNA seq data of four tissues of zebrafish treated by high hydrostatic pressure     replicate3   5MPa Eyes 3   strain:21|dev stage:adult|sex:female|tissue:Eyes|treatment:5MPa4h|BioSampleModel:Model organism or animal                 5MPa Eyes 3 5MPa Eyes 3 5MPa Eyes 3 5MPa4h     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP337553     5MPa_Eyes_3_1.fq.gz 5MPa_Eyes_3_2.fq.gz fastq fastq 6668948400.0 22229828.0 5MPa Eyes 3 1.fq.gz 0:150 1:150 A:1834337069;C:1512969737;G:1506586563;T:1815023710;N:31321 150 150     1834337069 1512969737 1506586563 1815023710 31321 SRX12217943 SRS10194145 SRA1295954 Northwestern Polytechnical University|School of Ecology and Environment Northwestern Polytechnical University 2 0.93733 0.93596 0.12498 0.12519 0.69189 0.69305 0.48896 0.48274 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-17 Adult Adult Eye Sensory System
66160 66160 SRR15927826 SRX12217941 SRS10194142 SRP337553 PRJNA764015 Short Term High Hydrostatic Pressure Responses at Gene Expression Level in Zebrafish PRJNA764015 Other the RNA seq data of four tissues of zebrafish treated by high hydrostatic pressure     replicate2   5MPa Eyes 2   strain:20|dev stage:adult|sex:female|tissue:Eyes|treatment:5MPa4h|BioSampleModel:Model organism or animal                 5MPa Eyes 2 5MPa Eyes 2 5MPa Eyes 2 5MPa4h     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP337553     5MPa_Eyes_2_1.fq.gz 5MPa_Eyes_2_2.fq.gz fastq fastq 6336463200.0 21121544.0 5MPa Eyes 2 1.fq.gz 0:150 1:150 A:1779919193;C:1400846827;G:1396248876;T:1759419000;N:29304 150 150     1779919193 1400846827 1396248876 1759419000 29304 SRX12217941 SRS10194142 SRA1295954 Northwestern Polytechnical University|School of Ecology and Environment Northwestern Polytechnical University 2 0.93975 0.93818 0.12255 0.12127 0.7237 0.72356 0.49471 0.49341 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-17 Adult Adult Eye Sensory System
66161 66161 SRR15927827 SRX12217940 SRS10194143 SRP337553 PRJNA764015 Short Term High Hydrostatic Pressure Responses at Gene Expression Level in Zebrafish PRJNA764015 Other the RNA seq data of four tissues of zebrafish treated by high hydrostatic pressure     replicate1   5MPa Eyes 1   strain:19|dev stage:adult|sex:female|tissue:Eyes|treatment:5MPa4h|BioSampleModel:Model organism or animal                 5MPa Eyes 1 5MPa Eyes 1 5MPa Eyes 1 5MPa4h     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP337553     5MPa_Eyes_1_1.fq.gz 5MPa_Eyes_1_2.fq.gz fastq fastq 6384034800.0 21280116.0 5MPa Eyes 1 1.fq.gz 0:150 1:150 A:1815009242;C:1388516630;G:1384180342;T:1796299168;N:29418 150 150     1815009242 1388516630 1384180342 1796299168 29418 SRX12217940 SRS10194143 SRA1295954 Northwestern Polytechnical University|School of Ecology and Environment Northwestern Polytechnical University 2 0.9346 0.93392 0.13191 0.13137 0.70798 0.70851 0.49354 0.49009 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-17 Adult Adult Eye Sensory System
70464 70464 SRR19897787 SRX15940767 SRS13627793 SRP384180 PRJNA854078 The eyes of Danio rerio RNA seq data from white light group blue light group white light + cold group and blue light + cold group PRJNA854078 Other zebrafish were placed in a white light emitting diode and a blue light emitting diode and 26 degrees centigrade water body. post pretreatment for two weeks fish were then transferred to white light and 11degrees centigrade water respectively.         CW1   strain:missing|age:missing|sex:missing|tissue:eye|repulicate:cold + white light repulicate 1|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio CW1 CW1 cold + white light     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2000   SRP384180     CW1_1.fq.gz CW1_2.fq.gz fastq fastq 6739882500.0 22466275.0 CW1 1.fq.gz 0:150 1:150 A:1848237756;C:1519101210;G:1513969331;T:1858563022;N:11181 150 150     1848237756 1519101210 1513969331 1858563022 11181 SRX15940767 SRS13627793 SRA1445974 Zhejiang Ocean University|National Engineering Research Center of Marine Fac Zhejiang Ocean University 2 0.9202 0.92005 0.10845 0.10844 0.68603 0.68696 0.52694 0.5273 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2022-06-29 Undetermined Undetermined Eye Sensory System
70465 70465 SRR19897788 SRX15940766 SRS13627792 SRP384180 PRJNA854078 The eyes of Danio rerio RNA seq data from white light group blue light group white light + cold group and blue light + cold group PRJNA854078 Other zebrafish were placed in a white light emitting diode and a blue light emitting diode and 26 degrees centigrade water body. post pretreatment for two weeks fish were then transferred to white light and 11degrees centigrade water respectively.         CB3   strain:missing|age:missing|sex:missing|tissue:eye|repulicate:cold + blue light repulicate 3|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio CB3 CB3 cold + blue light     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2000   SRP384180     CB3_1.fq.gz CB3_2.fq.gz fastq fastq 6616936500.0 22056455.0 CB3 1.fq.gz 0:150 1:150 A:1808345659;C:1499214022;G:1492074811;T:1817144348;N:157660 150 150     1808345659 1499214022 1492074811 1817144348 157660 SRX15940766 SRS13627792 SRA1445974 Zhejiang Ocean University|National Engineering Research Center of Marine Fac Zhejiang Ocean University 2 0.92167 0.92063 0.10246 0.10193 0.6883 0.68832 0.51958 0.52373 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2022-06-29 Undetermined Undetermined Eye Sensory System
70466 70466 SRR19897789 SRX15940765 SRS13627791 SRP384180 PRJNA854078 The eyes of Danio rerio RNA seq data from white light group blue light group white light + cold group and blue light + cold group PRJNA854078 Other zebrafish were placed in a white light emitting diode and a blue light emitting diode and 26 degrees centigrade water body. post pretreatment for two weeks fish were then transferred to white light and 11degrees centigrade water respectively.         CB2   strain:missing|age:missing|sex:missing|tissue:eye|repulicate:cold + blue light repulicate 2|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio CB2 CB2 cold + blue light     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2000   SRP384180     CB2_1.fq.gz CB2_2.fq.gz fastq fastq 6643125000.0 22143750.0 CB2 1.fq.gz 0:150 1:150 A:1834995141;C:1484447017;G:1478473640;T:1845045394;N:163808 150 150     1834995141 1484447017 1478473640 1845045394 163808 SRX15940765 SRS13627791 SRA1445974 Zhejiang Ocean University|National Engineering Research Center of Marine Fac Zhejiang Ocean University 2 0.91587 0.91485 0.10928 0.10908 0.67271 0.67284 0.53214 0.51839 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2022-06-29 Undetermined Undetermined Eye Sensory System
70467 70467 SRR19897790 SRX15940764 SRS13627790 SRP384180 PRJNA854078 The eyes of Danio rerio RNA seq data from white light group blue light group white light + cold group and blue light + cold group PRJNA854078 Other zebrafish were placed in a white light emitting diode and a blue light emitting diode and 26 degrees centigrade water body. post pretreatment for two weeks fish were then transferred to white light and 11degrees centigrade water respectively.         CB1   strain:missing|age:missing|sex:missing|tissue:eye|repulicate:cold + blue light repulicate 1|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio CB1 CB1 cold + blue light     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2000   SRP384180     CB1_1.fq.gz CB1_2.fq.gz fastq fastq 6726735900.0 22422453.0 CB1 1.fq.gz 0:150 1:150 A:1854984195;C:1506200798;G:1500739385;T:1864656690;N:154832 150 150     1854984195 1506200798 1500739385 1864656690 154832 SRX15940764 SRS13627790 SRA1445974 Zhejiang Ocean University|National Engineering Research Center of Marine Fac Zhejiang Ocean University 2 0.92107 0.92013 0.11091 0.11046 0.68416 0.68369 0.52205 0.51943 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2022-06-29 Undetermined Undetermined Eye Sensory System
70468 70468 SRR19897791 SRX15940763 SRS13627789 SRP384180 PRJNA854078 The eyes of Danio rerio RNA seq data from white light group blue light group white light + cold group and blue light + cold group PRJNA854078 Other zebrafish were placed in a white light emitting diode and a blue light emitting diode and 26 degrees centigrade water body. post pretreatment for two weeks fish were then transferred to white light and 11degrees centigrade water respectively.         W3   strain:missing|age:missing|sex:missing|tissue:eye|repulicate:white repulicate 3|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio W3 W3 white light     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2000   SRP384180     W3_1.fq.gz W3_2.fq.gz fastq fastq 6768510900.0 22561703.0 W3 1.fq.gz 0:150 1:150 A:1854668626;C:1528356228;G:1523098237;T:1862376595;N:11214 150 150     1854668626 1528356228 1523098237 1862376595 11214 SRX15940763 SRS13627789 SRA1445974 Zhejiang Ocean University|National Engineering Research Center of Marine Fac Zhejiang Ocean University 2 0.92284 0.92018 0.10477 0.10423 0.68032 0.68105 0.52004 0.52091 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2022-06-29 Undetermined Undetermined Eye Sensory System
70469 70469 SRR19897792 SRX15940762 SRS13627788 SRP384180 PRJNA854078 The eyes of Danio rerio RNA seq data from white light group blue light group white light + cold group and blue light + cold group PRJNA854078 Other zebrafish were placed in a white light emitting diode and a blue light emitting diode and 26 degrees centigrade water body. post pretreatment for two weeks fish were then transferred to white light and 11degrees centigrade water respectively.         W2   strain:missing|age:missing|sex:missing|tissue:eye|repulicate:white repulicate 2|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio W2 W2 white light     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2000   SRP384180     W2_1.fq.gz W2_2.fq.gz fastq fastq 6680260200.0 22267534.0 W2 1.fq.gz 0:150 1:150 A:1823317259;C:1515290462;G:1509530485;T:1832110882;N:11112 150 150     1823317259 1515290462 1509530485 1832110882 11112 SRX15940762 SRS13627788 SRA1445974 Zhejiang Ocean University|National Engineering Research Center of Marine Fac Zhejiang Ocean University 2 0.92292 0.92065 0.09554 0.09545 0.67551 0.6757 0.50849 0.51222 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2022-06-29 Undetermined Undetermined Eye Sensory System
70470 70470 SRR19897793 SRX15940761 SRS13627787 SRP384180 PRJNA854078 The eyes of Danio rerio RNA seq data from white light group blue light group white light + cold group and blue light + cold group PRJNA854078 Other zebrafish were placed in a white light emitting diode and a blue light emitting diode and 26 degrees centigrade water body. post pretreatment for two weeks fish were then transferred to white light and 11degrees centigrade water respectively.         W1   strain:missing|age:missing|sex:missing|tissue:eye|repulicate:white repulicate 1|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio W1 W1 white light     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2000   SRP384180     W1_1.fq.gz W1_2.fq.gz fastq fastq 6781992000.0 22606640.0 W1 1.fq.gz 0:150 1:150 A:1844053579;C:1544613499;G:1543816397;T:1849496814;N:11711 150 150     1844053579 1544613499 1543816397 1849496814 11711 SRX15940761 SRS13627787 SRA1445974 Zhejiang Ocean University|National Engineering Research Center of Marine Fac Zhejiang Ocean University 2 0.92064 0.91964 0.09713 0.09743 0.67667 0.67746 0.5212 0.50218 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2022-06-29 Undetermined Undetermined Eye Sensory System
70471 70471 SRR19897794 SRX15940760 SRS13627786 SRP384180 PRJNA854078 The eyes of Danio rerio RNA seq data from white light group blue light group white light + cold group and blue light + cold group PRJNA854078 Other zebrafish were placed in a white light emitting diode and a blue light emitting diode and 26 degrees centigrade water body. post pretreatment for two weeks fish were then transferred to white light and 11degrees centigrade water respectively.         B3   strain:missing|age:missing|sex:missing|tissue:eye|repulicate:blue repulicate 3|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio B3 B3 blue light     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2000   SRP384180     B3_1.fq.gz B3_2.fq.gz fastq fastq 6656595900.0 22188653.0 B3 1.fq.gz 0:150 1:150 A:1805784355;C:1520422218;G:1518168444;T:1812078392;N:142491 150 150     1805784355 1520422218 1518168444 1812078392 142491 SRX15940760 SRS13627786 SRA1445974 Zhejiang Ocean University|National Engineering Research Center of Marine Fac Zhejiang Ocean University 2 0.92236 0.91914 0.09522 0.09395 0.67661 0.67722 0.518 0.51697 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2022-06-29 Undetermined Undetermined Eye Sensory System
70472 70472 SRR19897795 SRX15940759 SRS13627785 SRP384180 PRJNA854078 The eyes of Danio rerio RNA seq data from white light group blue light group white light + cold group and blue light + cold group PRJNA854078 Other zebrafish were placed in a white light emitting diode and a blue light emitting diode and 26 degrees centigrade water body. post pretreatment for two weeks fish were then transferred to white light and 11degrees centigrade water respectively.         CW3   strain:missing|age:missing|sex:missing|tissue:eye|repulicate:cold + white light repulicate 3|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio CW3 CW3 cold + white light     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2000   SRP384180     CW3_1.fq.gz CW3_2.fq.gz fastq fastq 6747757500.0 22492525.0 CW3 1.fq.gz 0:150 1:150 A:1879771229;C:1493093261;G:1485694977;T:1889044111;N:153922 150 150     1879771229 1493093261 1485694977 1889044111 153922 SRX15940759 SRS13627785 SRA1445974 Zhejiang Ocean University|National Engineering Research Center of Marine Fac Zhejiang Ocean University 2 0.91511 0.9134 0.11866 0.11919 0.67667 0.67744 0.53077 0.53216 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2022-06-29 Undetermined Undetermined Eye Sensory System
70473 70473 SRR19897796 SRX15940758 SRS13627784 SRP384180 PRJNA854078 The eyes of Danio rerio RNA seq data from white light group blue light group white light + cold group and blue light + cold group PRJNA854078 Other zebrafish were placed in a white light emitting diode and a blue light emitting diode and 26 degrees centigrade water body. post pretreatment for two weeks fish were then transferred to white light and 11degrees centigrade water respectively.         CW2   strain:missing|age:missing|sex:missing|tissue:eye|repulicate:cold + white light repulicate 2|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio CW2 CW2 cold + white light     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2000   SRP384180     CW2_1.fq.gz CW2_2.fq.gz fastq fastq 6683398200.0 22277994.0 CW2 1.fq.gz 0:150 1:150 A:1843667678;C:1495135303;G:1486210450;T:1858373680;N:11089 150 150     1843667678 1495135303 1486210450 1858373680 11089 SRX15940758 SRS13627784 SRA1445974 Zhejiang Ocean University|National Engineering Research Center of Marine Fac Zhejiang Ocean University 2 0.91857 0.91787 0.11123 0.11217 0.68753 0.68858 0.5306 0.49945 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2022-06-29 Undetermined Undetermined Eye Sensory System
70474 70474 SRR19897797 SRX15940757 SRS13627783 SRP384180 PRJNA854078 The eyes of Danio rerio RNA seq data from white light group blue light group white light + cold group and blue light + cold group PRJNA854078 Other zebrafish were placed in a white light emitting diode and a blue light emitting diode and 26 degrees centigrade water body. post pretreatment for two weeks fish were then transferred to white light and 11degrees centigrade water respectively.         B2   strain:missing|age:missing|sex:missing|tissue:eye|repulicate:blue repulicate 2|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio B2 B2 blue light     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2000   SRP384180     B2_1.fq.gz B2_2.fq.gz fastq fastq 6727692000.0 22425640.0 B2 1.fq.gz 0:150 1:150 A:1850003227;C:1513202517;G:1506953883;T:1857378373;N:154000 150 150     1850003227 1513202517 1506953883 1857378373 154000 SRX15940757 SRS13627783 SRA1445974 Zhejiang Ocean University|National Engineering Research Center of Marine Fac Zhejiang Ocean University 2 0.91912 0.91906 0.1068 0.10681 0.6733 0.67247 0.52417 0.51448 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2022-06-29 Undetermined Undetermined Eye Sensory System
70475 70475 SRR19897798 SRX15940756 SRS13627782 SRP384180 PRJNA854078 The eyes of Danio rerio RNA seq data from white light group blue light group white light + cold group and blue light + cold group PRJNA854078 Other zebrafish were placed in a white light emitting diode and a blue light emitting diode and 26 degrees centigrade water body. post pretreatment for two weeks fish were then transferred to white light and 11degrees centigrade water respectively.         B1   strain:missing|age:missing|sex:missing|tissue:eye|repulicate:blue repulicate 1|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio B1 B1 blue light     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2000   SRP384180     B1_1.fq.gz B1_2.fq.gz fastq fastq 6763694400.0 22545648.0 B1 1.fq.gz 0:150 1:150 A:1864141494;C:1516607505;G:1508752023;T:1874030068;N:163310 150 150     1864141494 1516607505 1508752023 1874030068 163310 SRX15940756 SRS13627782 SRA1445974 Zhejiang Ocean University|National Engineering Research Center of Marine Fac Zhejiang Ocean University 2 0.91777 0.91753 0.11235 0.11188 0.68065 0.68069 0.51959 0.52086 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2022-06-29 Undetermined Undetermined Eye Sensory System

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;