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16 rows where experiment.library_selection = "PCR", experiment.platform = "ILLUMINA" and tissue_curation_coarse = "Cardiovascular System"

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tissue_curation_coarse 1

  • Cardiovascular System · 16 ✖

tissue_curation 1

technology 1

experiment.platform 1

  • ILLUMINA · 16 ✖

experiment.library_strategy 1

experiment.library_source 1

experiment.library_selection 1

  • PCR · 16 ✖

experiment.library_layout 1

devstage_curation_coarse 1

devstage_curation 1

Link rowid ▼ run.accession experiment.accession sample.accession study.accession bioproject study.title study.alias study.type study.abstract study.attributes study.PMIDs sample.description sample.title sample.alias sample.centername sample.attributes GEOsample.title GEOsample.dataprocessing GEOsample.source GEOsample.treatmentprotocol GEOsample.extractprotocol GEOsample.growthprotocol GEOsample.characteristics GEOsample.accession experiment.title experiment.alias experiment.library_name experiment.design_description experiment.library_construction_protocol experiment.attributes experiment.library_strategy experiment.library_source experiment.library_selection experiment.library_layout experiment.platform experiment.instrument_model experiment.spot_descriptor experiment.study_ref run.title run.attributes run.filename run.semantic_name run.total_bases run.total_spots run.alias run.read_lengths run.base_counts run.r1_length run.r2_length run.r3_length run.r4_length run.Acount run.Ccount run.Gcount run.Tcount run.Ncount run.experiment run.pool_member submission.accession submission.srasource submission.bioprojectsource seqdetective.n_mates seqdetective.mapping_rate.mate1 seqdetective.mapping_rate.mate2 seqdetective.nofeature_rate.mate1 seqdetective.nofeature_rate.mate2 seqdetective.sparsity.mate1 seqdetective.sparsity.mate2 seqdetective.pos_strand_rate.mate1 seqdetective.pos_strand_rate.mate2 seqdetective.readlen.mate1 seqdetective.readlen.mate2 seqdetective.judgement.mate1 seqdetective.judgement.mate2 seqdetective.judgement.reason platform_family instrument_generation read_bias selection_class prep_kit sc_or_bulk tech_class technology tech_variant submission.bioprojectsource.country earliest_date devstage_curation devstage_curation_coarse tissue_curation tissue_curation_coarse
33833 33833 SRR31441376 SRX26810183 SRS22696876 SRP533745 PRJNA1163016 Pseudoxanthoma elasticum PXE disease model sequencing in zebrafish PRJNA1163016 Other PXE is a rare multisystem disorder caused by mutations in the ABCC6/MRP6 gene associated with adverse clinical outcomes in cardiovascular diseases. However the underlying cardiovascular pathological mechanisms remain elusive. Transcriptomic analysis reveals change in the expression of genes related to the circulatory system and signal transduction.       RNA Seq for abcc6a8nt / mutant zebrafish hearts at 6 mpf 8 mpf rep1 HO 1   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:Mutant replicate 1|BioSampleModel:Model organism or animal                 RNA Seq for HO 2 HO 1 HO 2 RNA Seq for abcc6a8nt / mutant zebrafish hearts at 6 mpf 8 mpf rep1     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 4000   SRP533745     L1EHF0600987--HO_2H.R1.raw.fastq.gz L1EHF0600987--HO_2H.R2.raw.fastq.gz fastq fastq 6373025366.0 21102733.0 L1EHF0600987 HO 2H.R1.raw.fastq.gz 0:151 1:151 A:1745363166;C:1436102356;G:1463099869;T:1728443182;N:16793 151 151     1745363166 1436102356 1463099869 1728443182 16793 SRX26810183 SRS22696876     Guangdong Cardiovascular Institute                       B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-11-22 Adult Adult Heart Cardiovascular System
33834 33834 SRR30732053 SRX26134987 SRS22696876 SRP533745 PRJNA1163016 Pseudoxanthoma elasticum PXE disease model sequencing in zebrafish PRJNA1163016 Other PXE is a rare multisystem disorder caused by mutations in the ABCC6/MRP6 gene associated with adverse clinical outcomes in cardiovascular diseases. However the underlying cardiovascular pathological mechanisms remain elusive. Transcriptomic analysis reveals change in the expression of genes related to the circulatory system and signal transduction.       RNA Seq for abcc6a8nt / mutant zebrafish hearts at 6 mpf 8 mpf rep1 HO 1   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:Mutant replicate 1|BioSampleModel:Model organism or animal                 RNA Seq for HO 1 HO 1 HO 1 RNA Seq for abcc6a8nt / mutant zebrafish hearts at 6 mpf 8 mpf rep1     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 4000   SRP533745     L1EHF0600986--H0_1H.R1.raw.fastq.gz L1EHF0600986--H0_1H.R2.raw.fastq.gz fastq fastq 6369597666.0 21091383.0 L1EHF0600986 H0 1H.R1.raw.fastq.gz 0:151 1:151 A:1718159779;C:1459536211;G:1492957247;T:1698927602;N:16827 151 151     1718159779 1459536211 1492957247 1698927602 16827 SRX26134987 SRS22696876     Guangdong Cardiovascular Institute                       B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-09-19 Adult Adult Heart Cardiovascular System
33835 33835 SRR30732054 SRX26134986 SRS22696875 SRP533745 PRJNA1163016 Pseudoxanthoma elasticum PXE disease model sequencing in zebrafish PRJNA1163016 Other PXE is a rare multisystem disorder caused by mutations in the ABCC6/MRP6 gene associated with adverse clinical outcomes in cardiovascular diseases. However the underlying cardiovascular pathological mechanisms remain elusive. Transcriptomic analysis reveals change in the expression of genes related to the circulatory system and signal transduction.       RNA Seq for abcc6a+/+ zebrafish hearts at 6 mpf 8 mpf rep2 WT 2   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:Ctrl replicate 2|BioSampleModel:Model organism or animal                 RNA Seq for WT 2 WT 2 WT 2 RNA Seq for abcc6a+/+ zebrafish hearts at 6 mpf 8 mpf rep2     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 4000   SRP533745     L1EHF0600985--WT_2H.R1.raw.fastq.gz L1EHF0600985--WT_2H.R2.raw.fastq.gz fastq fastq 6431668934.0 21296917.0 L1EHF0600985 WT 2H.R1.raw.fastq.gz 0:151 1:151 A:1743394409;C:1464490412;G:1498514260;T:1725252317;N:17536 151 151     1743394409 1464490412 1498514260 1725252317 17536 SRX26134986 SRS22696875     Guangdong Cardiovascular Institute                       B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-09-19 Adult Adult Heart Cardiovascular System
33836 33836 SRR30732055 SRX26134985 SRS22696874 SRP533745 PRJNA1163016 Pseudoxanthoma elasticum PXE disease model sequencing in zebrafish PRJNA1163016 Other PXE is a rare multisystem disorder caused by mutations in the ABCC6/MRP6 gene associated with adverse clinical outcomes in cardiovascular diseases. However the underlying cardiovascular pathological mechanisms remain elusive. Transcriptomic analysis reveals change in the expression of genes related to the circulatory system and signal transduction.       RNA Seq for abcc6a+/+ zebrafish hearts at 6 mpf 8 mpf rep1 WT 1   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:Ctrl replicate 1|BioSampleModel:Model organism or animal                 RNA Seq for WT 1 WT 1 WT 1 RNA Seq for abcc6a+/+ zebrafish hearts at 6 mpf 8 mpf rep1     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 4000   SRP533745     L1EHF0600984--WT_1H.R1.raw.fastq.gz L1EHF0600984--WT_1H.R2.raw.fastq.gz fastq fastq 6277896574.0 20787737.0 L1EHF0600984 WT 1H.R1.raw.fastq.gz 0:151 1:151 A:1703988195;C:1423563137;G:1475908891;T:1674419696;N:16655 151 151     1703988195 1423563137 1475908891 1674419696 16655 SRX26134985 SRS22696874     Guangdong Cardiovascular Institute                       B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-09-19 Adult Adult Heart Cardiovascular System
34188 34188 SRR31441224 SRX26810034 SRS23295247 SRP546933 PRJNA1189340 Pseudoxanthoma elasticum PXE disease model and heart regeneration PRJNA1189340 Other         RNA Seq for abcc6a8nt / mutant cryosection zebrafish hearts at 6 mpf 8 mpf rep2 HO 2 cryosection heart   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:Mutant replicate 2|BioSampleModel:Model organism or animal                 RNA Seq for HO 2 HO 2 HO 2 RNA Seq for abcc6a8nt / mutant zebrafish hearts at 6 mpf 8 mpf rep1     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 4000   SRP546933     L1EIA1200826-HO_2.R1.raw.fastq.gz L1EIA1200826-HO_2.R2.raw.fastq.gz fastq fastq 7242400014.0 23981457.0 L1EIA1200826 HO 2.R1.raw.fastq.gz 0:151 1:151 A:2002602509;C:1618196753;G:1648132346;T:1968161693;N:5306713 151 151     2002602509 1618196753 1648132346 1968161693 5306713 SRX26810034 SRS23295247     Guangdong Cardiovascular Institute                       B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-11-22 Adult Adult Heart Cardiovascular System
34189 34189 SRR31441225 SRX26810033 SRS23295246 SRP546933 PRJNA1189340 Pseudoxanthoma elasticum PXE disease model and heart regeneration PRJNA1189340 Other         RNA Seq for abcc6a8nt / mutant zebrafish cryosection hearts at 6 mpf 8 mpf rep1 HO 1 cryosection heart   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:Mutant replicate 1|BioSampleModel:Model organism or animal                 RNA Seq for HO 1 HO 1 HO 1 RNA Seq for abcc6a8nt / mutant zebrafish hearts at 6 mpf 8 mpf rep1     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 4000   SRP546933     L1EIA1200825-HO_1.R1.raw.fastq.gz L1EIA1200825-HO_1.R2.raw.fastq.gz fastq fastq 7908051502.0 26185601.0 L1EIA1200825 HO 1.R1.raw.fastq.gz 0:151 1:151 A:2187398944;C:1761592009;G:1795611307;T:2157740883;N:5708359 151 151     2187398944 1761592009 1795611307 2157740883 5708359 SRX26810033 SRS23295246     Guangdong Cardiovascular Institute                       B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-11-22 Adult Adult Heart Cardiovascular System
34190 34190 SRR31441226 SRX26810032 SRS23295245 SRP546933 PRJNA1189340 Pseudoxanthoma elasticum PXE disease model and heart regeneration PRJNA1189340 Other         RNA Seq for abcc6a+/+ zebrafish cryosection hearts at 6 mpf 8 mpf rep2 WT 2 cryosection heart   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:Ctrl replicate 2|BioSampleModel:Model organism or animal                 RNA Seq for WT 2 WT 2 WT 2 RNA Seq for abcc6a+/+ zebrafish hearts at 6 mpf 8 mpf rep2     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 4000   SRP546933     L1EIA1200823-WT_2.R1.raw.fastq.gz L1EIA1200823-WT_2.R2.raw.fastq.gz fastq fastq 7322202306.0 24245703.0 L1EIA1200823 WT 2.R1.raw.fastq.gz 0:151 1:151 A:2040218817;C:1615688362;G:1649087360;T:2012040914;N:5166853 151 151     2040218817 1615688362 1649087360 2012040914 5166853 SRX26810032 SRS23295245     Guangdong Cardiovascular Institute                       B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-11-22 Adult Adult Heart Cardiovascular System
34191 34191 SRR31441227 SRX26810031 SRS23295244 SRP546933 PRJNA1189340 Pseudoxanthoma elasticum PXE disease model and heart regeneration PRJNA1189340 Other         RNA Seq for abcc6a+/+ zebrafish cryosection hearts at 6 mpf 8 mpf rep1 WT 1 cryosection heart   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:Ctrl replicate 1|BioSampleModel:Model organism or animal                 RNA Seq for WT 1 WT 1 WT 1 RNA Seq for abcc6a+/+ zebrafish hearts at 6 mpf 8 mpf rep1     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 4000   SRP546933     L1EIA1200822-WT_1.R1.raw.fastq.gz L1EIA1200822-WT_1.R2.raw.fastq.gz fastq fastq 7055242460.0 23361730.0 L1EIA1200822 WT 1.R1.raw.fastq.gz 0:151 1:151 A:1997464555;C:1527077848;G:1561244846;T:1964383184;N:5072027 151 151     1997464555 1527077848 1561244846 1964383184 5072027 SRX26810031 SRS23295244     Guangdong Cardiovascular Institute                       B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-11-22 Adult Adult Heart Cardiovascular System
34198 34198 SRR31479986 SRX26848533 SRS23332379 SRP547192 PRJNA1189851 Pseudoxanthoma elasticum PXE disease model sequencing in zebrafish bone and scale PRJNA1189851 Other PXE is a rare multisystem disorder caused by mutations in the ABCC6/MRP6 gene associated with adverse clinical outcomes in cardiovascular diseases. However the underlying cardiovascular pathological mechanisms remain elusive. Transcriptomic analysis reveals change in the expression of genes related to the bone and scale.       RNA Seq for Type3B 2 abcc6a8nt / mutant zebrafish b1 at 6 mpf 8 mpf rep1 Type3B 2   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:2023 05 08|geo loc name:not applicable|sex:male and female|tissue:B1|BioSampleModel:Model organism or animal                 RNA Seq for Type3B 2 Type3B 2 Type3B 2 RNA Seq for abcc6a8nt / mutant zebrafish hearts at 6 mpf 8 mpf rep2     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 4000   SRP547192     L1EHF0600995--Type3B_2.R1.raw.fastq.gz L1EHF0600995--Type3B_2.R2.raw.fastq.gz fastq fastq 7042308404.0 23318902.0 L1EHF0600995 Type3B 2.R1.raw.fastq.gz 0:151 1:151 A:1844855580;C:1674932476;G:1701372344;T:1821129313;N:18691 151 151     1844855580 1674932476 1701372344 1821129313 18691 SRX26848533 SRS23332379     Guangdong Cardiovascular Institute                       B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-11-24 Adult Adult Heart Cardiovascular System
34199 34199 SRR31479987 SRX26848532 SRS23332378 SRP547192 PRJNA1189851 Pseudoxanthoma elasticum PXE disease model sequencing in zebrafish bone and scale PRJNA1189851 Other PXE is a rare multisystem disorder caused by mutations in the ABCC6/MRP6 gene associated with adverse clinical outcomes in cardiovascular diseases. However the underlying cardiovascular pathological mechanisms remain elusive. Transcriptomic analysis reveals change in the expression of genes related to the bone and scale.       RNA Seq for Type3B 1 abcc6a8nt / mutant zebrafish b1 at 6 mpf 8 mpf rep1 Type3B 1   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:2023 05 07|geo loc name:not applicable|sex:male and female|tissue:B1|BioSampleModel:Model organism or animal                 RNA Seq for Type3B 1 Type3B 1 Type3B 1 RNA Seq for abcc6a8nt / mutant zebrafish hearts at 6 mpf 8 mpf rep1     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 4000   SRP547192     L1EHF0600994--Type3B_1.R1.raw.fastq.gz L1EHF0600994--Type3B_1.R2.raw.fastq.gz fastq fastq 9559607056.0 31654328.0 L1EHF0600994 Type3B 1.R1.raw.fastq.gz 0:151 1:151 A:2506873093;C:2261724862;G:2309662215;T:2481321575;N:25311 151 151     2506873093 2261724862 2309662215 2481321575 25311 SRX26848532 SRS23332378     Guangdong Cardiovascular Institute                       B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-11-24 Adult Adult Heart Cardiovascular System
34200 34200 SRR31479988 SRX26848531 SRS23332377 SRP547192 PRJNA1189851 Pseudoxanthoma elasticum PXE disease model sequencing in zebrafish bone and scale PRJNA1189851 Other PXE is a rare multisystem disorder caused by mutations in the ABCC6/MRP6 gene associated with adverse clinical outcomes in cardiovascular diseases. However the underlying cardiovascular pathological mechanisms remain elusive. Transcriptomic analysis reveals change in the expression of genes related to the bone and scale.       RNA Seq for Type2B 2 abcc6a8nt / mutant zebrafish b1 at 6 mpf 8 mpf rep1 Type2B 2   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:2023 05 06|geo loc name:not applicable|sex:male and female|tissue:B1|BioSampleModel:Model organism or animal                 RNA Seq for Type2B 2 Type2B 2 Type2B 2 RNA Seq for abcc6a8nt / mutant zebrafish hearts at 6 mpf 8 mpf rep2     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 4000   SRP547192     L1EHF0600993--Type2B_2.R1.raw.fastq.gz L1EHF0600993--Type2B_2.R2.raw.fastq.gz fastq fastq 8451570566.0 27985333.0 L1EHF0600993 Type2B 2.R1.raw.fastq.gz 0:151 1:151 A:2206016865;C:2013747714;G:2053206643;T:2178577239;N:22105 151 151     2206016865 2013747714 2053206643 2178577239 22105 SRX26848531 SRS23332377     Guangdong Cardiovascular Institute                       B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-11-24 Adult Adult Heart Cardiovascular System
34201 34201 SRR31479989 SRX26848530 SRS23332376 SRP547192 PRJNA1189851 Pseudoxanthoma elasticum PXE disease model sequencing in zebrafish bone and scale PRJNA1189851 Other PXE is a rare multisystem disorder caused by mutations in the ABCC6/MRP6 gene associated with adverse clinical outcomes in cardiovascular diseases. However the underlying cardiovascular pathological mechanisms remain elusive. Transcriptomic analysis reveals change in the expression of genes related to the bone and scale.       RNA Seq for Type2B 1 abcc6a8nt / mutant zebrafish b1 at 6 mpf 8 mpf rep1 Type2B 1   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:2023 05 05|geo loc name:not applicable|sex:male and female|tissue:B1|BioSampleModel:Model organism or animal                 RNA Seq for Type2B 1 Type2B 1 Type2B 1 RNA Seq for abcc6a8nt / mutant zebrafish hearts at 6 mpf 8 mpf rep1     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 4000   SRP547192     L1EHF0600992--Type2B_1.R1.raw.fastq.gz L1EHF0600992--Type2B_1.R2.raw.fastq.gz fastq fastq 8173656576.0 27065088.0 L1EHF0600992 Type2B 1.R1.raw.fastq.gz 0:151 1:151 A:2108108352;C:1972206034;G:2007561479;T:2085759073;N:21638 151 151     2108108352 1972206034 2007561479 2085759073 21638 SRX26848530 SRS23332376     Guangdong Cardiovascular Institute                       B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-11-24 Adult Adult Heart Cardiovascular System
34202 34202 SRR31479990 SRX26848529 SRS23332375 SRP547192 PRJNA1189851 Pseudoxanthoma elasticum PXE disease model sequencing in zebrafish bone and scale PRJNA1189851 Other PXE is a rare multisystem disorder caused by mutations in the ABCC6/MRP6 gene associated with adverse clinical outcomes in cardiovascular diseases. However the underlying cardiovascular pathological mechanisms remain elusive. Transcriptomic analysis reveals change in the expression of genes related to the bone and scale.       RNA Seq for Type1B 2 abcc6a8nt / mutant zebrafish b1 at 6 mpf 8 mpf rep1 Type1B 2   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:2023 05 04|geo loc name:not applicable|sex:male and female|tissue:B1|BioSampleModel:Model organism or animal                 RNA Seq for Type1B 2 Type1B 2 Type1B 2 RNA Seq for abcc6a8nt / mutant zebrafish hearts at 6 mpf 8 mpf rep2     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 4000   SRP547192     L1EHF0600991--Type1B_2.R1.raw.fastq.gz L1EHF0600991--Type1B_2.R2.raw.fastq.gz fastq fastq 6856733934.0 22704417.0 L1EHF0600991 Type1B 2.R1.raw.fastq.gz 0:151 1:151 A:1819254779;C:1602255119;G:1640783411;T:1794422519;N:18106 151 151     1819254779 1602255119 1640783411 1794422519 18106 SRX26848529 SRS23332375     Guangdong Cardiovascular Institute                       B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-11-24 Adult Adult Heart Cardiovascular System
34203 34203 SRR31479991 SRX26848528 SRS23332374 SRP547192 PRJNA1189851 Pseudoxanthoma elasticum PXE disease model sequencing in zebrafish bone and scale PRJNA1189851 Other PXE is a rare multisystem disorder caused by mutations in the ABCC6/MRP6 gene associated with adverse clinical outcomes in cardiovascular diseases. However the underlying cardiovascular pathological mechanisms remain elusive. Transcriptomic analysis reveals change in the expression of genes related to the bone and scale.       RNA Seq for Type1B 1 abcc6a8nt / mutant zebrafish b1 at 6 mpf 8 mpf rep1 Type1B 1   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:2023 05 03|geo loc name:not applicable|sex:male and female|tissue:B1|BioSampleModel:Model organism or animal                 RNA Seq for Type1B 1 Type1B 1 Type1B 1 RNA Seq for abcc6a8nt / mutant zebrafish hearts at 6 mpf 8 mpf rep1     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 4000   SRP547192     L1EHF0600990--Type1B_1.R1.raw.fastq.gz L1EHF0600990--Type1B_1.R2.raw.fastq.gz fastq fastq 8199716760.0 27151380.0 L1EHF0600990 Type1B 1.R1.raw.fastq.gz 0:151 1:151 A:2143640345;C:1952882726;G:1983987224;T:2119185119;N:21346 151 151     2143640345 1952882726 1983987224 2119185119 21346 SRX26848528 SRS23332374     Guangdong Cardiovascular Institute                       B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-11-24 Adult Adult Heart Cardiovascular System
34204 34204 SRR31479992 SRX26848527 SRS23332373 SRP547192 PRJNA1189851 Pseudoxanthoma elasticum PXE disease model sequencing in zebrafish bone and scale PRJNA1189851 Other PXE is a rare multisystem disorder caused by mutations in the ABCC6/MRP6 gene associated with adverse clinical outcomes in cardiovascular diseases. However the underlying cardiovascular pathological mechanisms remain elusive. Transcriptomic analysis reveals change in the expression of genes related to the bone and scale.       RNA Seq for WT 2B abcc6a8nt / mutant zebrafish b1 at 6 mpf 8 mpf rep2 WT 2B   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:2023 05 02|geo loc name:not applicable|sex:male and female|tissue:B1|BioSampleModel:Model organism or animal                 RNA Seq for WT 2B WT 2B WT 2B RNA Seq for abcc6a8nt / mutant zebrafish hearts at 6 mpf 8 mpf rep2     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 4000   SRP547192     L1EHF0600989--WT_2B.R1.raw.fastq.gz L1EHF0600989--WT_2B.R2.raw.fastq.gz fastq fastq 7647939204.0 25324302.0 L1EHF0600989 WT 2B.R1.raw.fastq.gz 0:151 1:151 A:1987849331;C:1831909030;G:1863287600;T:1964873314;N:19929 151 151     1987849331 1831909030 1863287600 1964873314 19929 SRX26848527 SRS23332373     Guangdong Cardiovascular Institute                       B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-11-24 Adult Adult Heart Cardiovascular System
34205 34205 SRR31479993 SRX26848526 SRS23332372 SRP547192 PRJNA1189851 Pseudoxanthoma elasticum PXE disease model sequencing in zebrafish bone and scale PRJNA1189851 Other PXE is a rare multisystem disorder caused by mutations in the ABCC6/MRP6 gene associated with adverse clinical outcomes in cardiovascular diseases. However the underlying cardiovascular pathological mechanisms remain elusive. Transcriptomic analysis reveals change in the expression of genes related to the bone and scale.       RNA Seq for WT 1B abcc6a8nt / mutant zebrafish b1 at 6 mpf 8 mpf rep1 WT 1B   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:2023 05 01|geo loc name:not applicable|sex:male and female|tissue:B1|BioSampleModel:Model organism or animal                 RNA Seq for WT 1B WT 1B WT 1B RNA Seq for abcc6a8nt / mutant zebrafish hearts at 6 mpf 8 mpf rep1     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 4000   SRP547192     L1EHF0600988--WT_1B.R1.raw.fastq.gz L1EHF0600988--WT_1B.R2.raw.fastq.gz fastq fastq 6899503476.0 22846038.0 L1EHF0600988 WT 1B.R1.raw.fastq.gz 0:151 1:151 A:1785929563;C:1655039537;G:1701749629;T:1756766946;N:17801 151 151     1785929563 1655039537 1701749629 1756766946 17801 SRX26848526 SRS23332372     Guangdong Cardiovascular Institute                       B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-11-24 Adult Adult Heart Cardiovascular System

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;