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run_metadata

15 rows where experiment.library_selection = "PCR", experiment.platform = "ILLUMINA" and technology = "10x"

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tissue_curation_coarse 2

tissue_curation 2

experiment.library_strategy 2

devstage_curation_coarse 2

devstage_curation 2

technology 1

  • 10x · 15 ✖

experiment.platform 1

  • ILLUMINA · 15 ✖

experiment.library_source 1

experiment.library_selection 1

  • PCR · 15 ✖

experiment.library_layout 1

Link rowid ▼ run.accession experiment.accession sample.accession study.accession bioproject study.title study.alias study.type study.abstract study.attributes study.PMIDs sample.description sample.title sample.alias sample.centername sample.attributes GEOsample.title GEOsample.dataprocessing GEOsample.source GEOsample.treatmentprotocol GEOsample.extractprotocol GEOsample.growthprotocol GEOsample.characteristics GEOsample.accession experiment.title experiment.alias experiment.library_name experiment.design_description experiment.library_construction_protocol experiment.attributes experiment.library_strategy experiment.library_source experiment.library_selection experiment.library_layout experiment.platform experiment.instrument_model experiment.spot_descriptor experiment.study_ref run.title run.attributes run.filename run.semantic_name run.total_bases run.total_spots run.alias run.read_lengths run.base_counts run.r1_length run.r2_length run.r3_length run.r4_length run.Acount run.Ccount run.Gcount run.Tcount run.Ncount run.experiment run.pool_member submission.accession submission.srasource submission.bioprojectsource seqdetective.n_mates seqdetective.mapping_rate.mate1 seqdetective.mapping_rate.mate2 seqdetective.nofeature_rate.mate1 seqdetective.nofeature_rate.mate2 seqdetective.sparsity.mate1 seqdetective.sparsity.mate2 seqdetective.pos_strand_rate.mate1 seqdetective.pos_strand_rate.mate2 seqdetective.readlen.mate1 seqdetective.readlen.mate2 seqdetective.judgement.mate1 seqdetective.judgement.mate2 seqdetective.judgement.reason platform_family instrument_generation read_bias selection_class prep_kit sc_or_bulk tech_class technology tech_variant submission.bioprojectsource.country earliest_date devstage_curation devstage_curation_coarse tissue_curation tissue_curation_coarse
58873 58873 SRR11509894 SRX8082006 SRS6450124 SRP255712 PRJNA623798 Single cell lineage tracing on endogenous scarring sites scLOESS PRJNA623798 Other Lineage recording of zebrafish embryogenesis reveals early cell fate commitment     1g cDNA library fetch from 10x Genomics Chromium Single Cell 3 Library was amplified by extra 15 cycles. and then split into 90 equal aliquots to amplify each target by 25 cycles and purified amplicons were pooled into an equimolar mixture. 3 independent replicates in total. Target specific Amplification of Single Cell cDNA Library SCC   strain:AB line|age:7dpf|dev stage:larvae|sex:not applicable|tissue:Whole organism|collection date:2018 07 26|BioSampleModel:Model organism or animal                 Single cell cDNA library Amplicon of zebrafish larva replicate 3 SCC replicate3 SCC replicate3 1g cDNA library fetch from 10x Genomics Chromium Single Cell 3 Library was amplified by extra 15 cycles. and then split into 90 equal aliquots to amplify each target by 25 cycles and purified amplicons were pooled into an equimolar mixture. PCR replicate 3.     AMPLICON TRANSCRIPTOMIC SINGLE CELL PCR PAIRED ILLUMINA HiSeq X Ten   SRP255712     SCC-replicate3_R1.fq.gz SCC-replicate3_R2.fq.gz fastq fastq 14811756300.0 49372521.0 SCC replicate3 R1.fq.gz 0:150 1:150 A:3255250699;C:3018244265;G:3088919277;T:5446140655;N:3201404 150 150     3255250699 3018244265 3088919277 5446140655 3201404 SRX8082006 SRS6450124 SRA1063780 Sun Yat- sen University|Life Sicence School Sun Yat- sen University 2 0.01015 0.97122 0.00049 0.00158 0.99841 0.97569 0.54867 0.48858 150 150 T B mate1 technical by mapping diff illumina hiseq_era unknown random_priming unknown sc single_cell_droplet 10x   China 2020-04-10 Larval Larval Whole Organism All anatomical structures
58874 58874 SRR11509895 SRX8082005 SRS6450124 SRP255712 PRJNA623798 Single cell lineage tracing on endogenous scarring sites scLOESS PRJNA623798 Other Lineage recording of zebrafish embryogenesis reveals early cell fate commitment     1g cDNA library fetch from 10x Genomics Chromium Single Cell 3 Library was amplified by extra 15 cycles. and then split into 90 equal aliquots to amplify each target by 25 cycles and purified amplicons were pooled into an equimolar mixture. 3 independent replicates in total. Target specific Amplification of Single Cell cDNA Library SCC   strain:AB line|age:7dpf|dev stage:larvae|sex:not applicable|tissue:Whole organism|collection date:2018 07 26|BioSampleModel:Model organism or animal                 Single cell cDNA library Amplicon of zebrafish larva replicate 2 SCC replicate2 SCC replicate2 1g cDNA library fetch from 10x Genomics Chromium Single Cell 3 Library was amplified by extra 15 cycles. and then split into 90 equal aliquots to amplify each target by 25 cycles and purified amplicons were pooled into an equimolar mixture. PCR replicate 2.     AMPLICON TRANSCRIPTOMIC SINGLE CELL PCR PAIRED ILLUMINA HiSeq X Ten   SRP255712     SCC-replicate2_R2.fq.gz SCC-replicate2_R1.fq.gz fastq fastq 19858547700.0 66195159.0 SCC replicate2 R1.fq.gz 0:150 1:150 A:4363166112;C:4066433314;G:4155737160;T:7269480395;N:3730719 150 150     4363166112 4066433314 4155737160 7269480395 3730719 SRX8082005 SRS6450124 SRA1063780 Sun Yat- sen University|Life Sicence School Sun Yat- sen University 2 0.025 0.97152 0.00079 0.00143 0.99746 0.97668 0.74358 0.46727 150 150 T B mate1 technical by mapping diff illumina hiseq_era unknown random_priming unknown sc single_cell_droplet 10x   China 2020-04-09 Larval Larval Whole Organism All anatomical structures
58875 58875 SRR11509896 SRX8082004 SRS6450124 SRP255712 PRJNA623798 Single cell lineage tracing on endogenous scarring sites scLOESS PRJNA623798 Other Lineage recording of zebrafish embryogenesis reveals early cell fate commitment     1g cDNA library fetch from 10x Genomics Chromium Single Cell 3 Library was amplified by extra 15 cycles. and then split into 90 equal aliquots to amplify each target by 25 cycles and purified amplicons were pooled into an equimolar mixture. 3 independent replicates in total. Target specific Amplification of Single Cell cDNA Library SCC   strain:AB line|age:7dpf|dev stage:larvae|sex:not applicable|tissue:Whole organism|collection date:2018 07 26|BioSampleModel:Model organism or animal                 Single cell cDNA library Amplicon of zebrafish larva replicate 1 SCC replicate1 SCC replicate1 1g cDNA library fetch from 10x Genomics Chromium Single Cell 3 Library was amplified by extra 15 cycles. and then split into 90 equal aliquots to amplify each target by 25 cycles and purified amplicons were pooled into an equimolar mixture. PCR replicate 1.     AMPLICON TRANSCRIPTOMIC SINGLE CELL PCR PAIRED ILLUMINA HiSeq X Ten   SRP255712     SCC-replicate1_R1.fq.gz SCC-replicate1_R2.fq.gz fastq fastq 18191440200.0 60638134.0 SCC replicate1 R1.fq.gz 0:150 1:150 A:3994446536;C:3726446852;G:3814798796;T:6652431833;N:3316183 150 150     3994446536 3726446852 3814798796 6652431833 3316183 SRX8082004 SRS6450124 SRA1063780 Sun Yat- sen University|Life Sicence School Sun Yat- sen University 2 0.03094 0.97334 0.00045 0.00127 0.99774 0.97824 0.80981 0.45378 150 150 T B mate1 technical by mapping diff illumina hiseq_era unknown random_priming unknown sc single_cell_droplet 10x   China 2020-04-09 Larval Larval Whole Organism All anatomical structures
61523 61523 SRR12858253 SRX9325184 SRS7549492 SRP287979 PRJNA668529 Single Cell Olfactory Organ of Zebrafish exposed to r Spike from SARS CoV 2 PRJNA668529 Other Captured fresh cells with 10x genomic chromium then sequenced with illumina NovaSeq         Zebrafish Intranasal rSpike 3Day   strain:AB|age:3 Months|sex:female and male|tissue:Olfactory Rosette|treatment:Intranasal 100ng r Spike 3Day|BioSampleModel:Model organism or animal                 Single cell zebrafish olfactory organ: intranasal r Spike 3Day 3Day 2 S6 3Day 2 S6 Followed Chromium Next GEM Single Cell 3 Reagent Kits v3.1     RNA-Seq TRANSCRIPTOMIC SINGLE CELL PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP287979     3Day_2_S6_L004_R1_001.fastq.gz 3Day_2_S6_L004_R2_001.fastq.gz fastq fastq 76033651818.0 251767059.0 3Day 2 S6 L004 R1 001.fastq.gz 0:151 1:151 A:35535267340;C:11863415027;G:11773502422;T:16858157612;N:3309417 151 151     35535267340 11863415027 11773502422 16858157612 3309417 SRX9325184 SRS7549492 SRA1141422 University of New Mexico|Biology University of New Mexico 2 0.0 0.86148 0.0 0.22304 1.0 0.7582   0.53846 151 151 T B mate1 technical by mapping diff illumina novaseq_era unknown random_priming unknown sc single_cell_droplet 10x   Mexico 2020-10-21 Adult Adult Brain Nervous System
61524 61524 SRR12858254 SRX9325183 SRS7549492 SRP287979 PRJNA668529 Single Cell Olfactory Organ of Zebrafish exposed to r Spike from SARS CoV 2 PRJNA668529 Other Captured fresh cells with 10x genomic chromium then sequenced with illumina NovaSeq         Zebrafish Intranasal rSpike 3Day   strain:AB|age:3 Months|sex:female and male|tissue:Olfactory Rosette|treatment:Intranasal 100ng r Spike 3Day|BioSampleModel:Model organism or animal                 Single cell zebrafish olfactory organ: intranasal r Spike 3Day 3Day 1 S5 3Day 1 S5 Followed Chromium Next GEM Single Cell 3 Reagent Kits v3.1     RNA-Seq TRANSCRIPTOMIC SINGLE CELL PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP287979     3Day_1_S5_L004_R1_001.fastq.gz 3Day_1_S5_L004_R2_001.fastq.gz fastq fastq 59092751626.0 195671363.0 3Day 1 S5 L004 R1 001.fastq.gz 0:151 1:151 A:27630588655;C:9241106126;G:9168471456;T:13050007147;N:2578242 151 151     27630588655 9241106126 9168471456 13050007147 2578242 SRX9325183 SRS7549492 SRA1141422 University of New Mexico|Biology University of New Mexico 2 0.0 0.86271 0.0 0.22343 1.0 0.76023   0.54977 151 151 T B mate1 technical by mapping diff illumina novaseq_era unknown random_priming unknown sc single_cell_droplet 10x   Mexico 2020-10-21 Adult Adult Brain Nervous System
61525 61525 SRR12858255 SRX9325182 SRS7549493 SRP287979 PRJNA668529 Single Cell Olfactory Organ of Zebrafish exposed to r Spike from SARS CoV 2 PRJNA668529 Other Captured fresh cells with 10x genomic chromium then sequenced with illumina NovaSeq         Zebrafish Intranasal rSpike 3Hour   strain:AB|age:3 Months|sex:female and male|tissue:Olfactory Rosette|treatment:Intranasal 100ng r Spike 3Hour|BioSampleModel:Model organism or animal                 Single cell zebrafish olfactory organ: intranasal r Spike 3Hours 3Hour 4 S12 3Hour 4 S12 Followed Chromium Next GEM Single Cell 3 Reagent Kits v3.1     RNA-Seq TRANSCRIPTOMIC SINGLE CELL PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP287979     3Hour_4_S12_L004_R1_001.fastq.gz 3Hour_4_S12_L004_R2_001.fastq.gz fastq fastq 72128136780.0 238834890.0 3Hour 4 S12 L004 R1 001.fastq.gz 0:151 1:151 A:33932689920;C:11046769968;G:10941298685;T:16204223580;N:3154627 151 151     33932689920 11046769968 10941298685 16204223580 3154627 SRX9325182 SRS7549493 SRA1141422 University of New Mexico|Biology University of New Mexico 2 0.0 0.84197 0.0 0.22466 1.0 0.78441   0.56868 151 151 T B mate1 technical by mapping diff illumina novaseq_era unknown random_priming unknown sc single_cell_droplet 10x   Mexico 2020-10-21 Adult Adult Brain Nervous System
61526 61526 SRR12858256 SRX9325181 SRS7549493 SRP287979 PRJNA668529 Single Cell Olfactory Organ of Zebrafish exposed to r Spike from SARS CoV 2 PRJNA668529 Other Captured fresh cells with 10x genomic chromium then sequenced with illumina NovaSeq         Zebrafish Intranasal rSpike 3Hour   strain:AB|age:3 Months|sex:female and male|tissue:Olfactory Rosette|treatment:Intranasal 100ng r Spike 3Hour|BioSampleModel:Model organism or animal                 Single cell zebrafish olfactory organ: intranasal r Spike 3Hours 3Hour 3 S11 3Hour 3 S11 Followed Chromium Next GEM Single Cell 3 Reagent Kits v3.1     RNA-Seq TRANSCRIPTOMIC SINGLE CELL PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP287979     3Hour_3_S11_L004_R1_001.fastq.gz 3Hour_3_S11_L004_R2_001.fastq.gz fastq fastq 80705527190.0 267236845.0 3Hour 3 S11 L004 R1 001.fastq.gz 0:151 1:151 A:37985436560;C:12358793423;G:12237346212;T:18120396893;N:3554102 151 151     37985436560 12358793423 12237346212 18120396893 3554102 SRX9325181 SRS7549493 SRA1141422 University of New Mexico|Biology University of New Mexico 2 0.0 0.84472 0.0 0.22522 1.0 0.78293   0.57384 151 151 T B mate1 technical by mapping diff illumina novaseq_era unknown random_priming unknown sc single_cell_droplet 10x   Mexico 2020-10-21 Adult Adult Brain Nervous System
61527 61527 SRR12858257 SRX9325180 SRS7549493 SRP287979 PRJNA668529 Single Cell Olfactory Organ of Zebrafish exposed to r Spike from SARS CoV 2 PRJNA668529 Other Captured fresh cells with 10x genomic chromium then sequenced with illumina NovaSeq         Zebrafish Intranasal rSpike 3Hour   strain:AB|age:3 Months|sex:female and male|tissue:Olfactory Rosette|treatment:Intranasal 100ng r Spike 3Hour|BioSampleModel:Model organism or animal                 Single cell zebrafish olfactory organ: intranasal r Spike 3Hours 3Hour 2 S10 3Hour 2 S10 Followed Chromium Next GEM Single Cell 3 Reagent Kits v3.1     RNA-Seq TRANSCRIPTOMIC SINGLE CELL PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP287979     3Hour_2_S10_L004_R1_001.fastq.gz 3Hour_2_S10_L004_R2_001.fastq.gz fastq fastq 76448858632.0 253141916.0 3Hour 2 S10 L004 R1 001.fastq.gz 0:151 1:151 A:35936389130;C:11685225790;G:11595239085;T:17228685305;N:3319322 151 151     35936389130 11685225790 11595239085 17228685305 3319322 SRX9325180 SRS7549493 SRA1141422 University of New Mexico|Biology University of New Mexico 2 0.0 0.84222 0.0 0.22514 1.0 0.78309   0.56453 151 151 T B mate1 technical by mapping diff illumina novaseq_era unknown random_priming unknown sc single_cell_droplet 10x   Mexico 2020-10-21 Adult Adult Brain Nervous System
61528 61528 SRR12858258 SRX9325179 SRS7549493 SRP287979 PRJNA668529 Single Cell Olfactory Organ of Zebrafish exposed to r Spike from SARS CoV 2 PRJNA668529 Other Captured fresh cells with 10x genomic chromium then sequenced with illumina NovaSeq         Zebrafish Intranasal rSpike 3Hour   strain:AB|age:3 Months|sex:female and male|tissue:Olfactory Rosette|treatment:Intranasal 100ng r Spike 3Hour|BioSampleModel:Model organism or animal                 Single cell zebrafish olfactory organ: intranasal r Spike 3Hours 3Hour 1 S9 3Hour 1 S9 Followed Chromium Next GEM Single Cell 3 Reagent Kits v3.1     RNA-Seq TRANSCRIPTOMIC SINGLE CELL PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP287979     3Hour_1_S9_L004_R1_001.fastq.gz 3Hour_1_S9_L004_R2_001.fastq.gz fastq fastq 74702264584.0 247358492.0 3Hour 1 S9 L004 R1 001.fastq.gz 0:151 1:151 A:35096290154;C:11422923493;G:11335995120;T:16843790763;N:3265054 151 151     35096290154 11422923493 11335995120 16843790763 3265054 SRX9325179 SRS7549493 SRA1141422 University of New Mexico|Biology University of New Mexico 2 0.0 0.84313 0.0 0.2256 1.0 0.78514   0.57158 151 151 T B mate1 technical by mapping diff illumina novaseq_era unknown random_priming unknown sc single_cell_droplet 10x   Mexico 2020-10-21 Adult Adult Brain Nervous System
61529 61529 SRR12858259 SRX9325178 SRS7549491 SRP287979 PRJNA668529 Single Cell Olfactory Organ of Zebrafish exposed to r Spike from SARS CoV 2 PRJNA668529 Other Captured fresh cells with 10x genomic chromium then sequenced with illumina NovaSeq         Zebrafish intranasal PBS   strain:AB|age:3 Months|sex:female and male|tissue:Olfactory Rosette|treatment:Intranasal PBS|BioSampleModel:Model organism or animal                 Single cell zebrafish olfactory organ: intranasal PBS Control 4 S4 Control 4 S4 Followed Chromium Next GEM Single Cell 3 Reagent Kits v3.1     RNA-Seq TRANSCRIPTOMIC SINGLE CELL PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP287979     Control_4_S4_L004_R1_001.fastq.gz Control_4_S4_L004_R2_001.fastq.gz fastq fastq 63748002502.0 211086101.0 Control 4 S4 L004 R1 001.fastq.gz 0:151 1:151 A:29580785771;C:10210575747;G:10201571462;T:13752296624;N:2772898 151 151     29580785771 10210575747 10201571462 13752296624 2772898 SRX9325178 SRS7549491 SRA1141422 University of New Mexico|Biology University of New Mexico 2 0.0 0.87565 0.0 0.22003 1.0 0.76808   0.5449 151 151 T B mate1 technical by mapping diff illumina novaseq_era unknown random_priming unknown sc single_cell_droplet 10x   Mexico 2020-10-21 Adult Adult Brain Nervous System
61530 61530 SRR12858260 SRX9325177 SRS7549491 SRP287979 PRJNA668529 Single Cell Olfactory Organ of Zebrafish exposed to r Spike from SARS CoV 2 PRJNA668529 Other Captured fresh cells with 10x genomic chromium then sequenced with illumina NovaSeq         Zebrafish intranasal PBS   strain:AB|age:3 Months|sex:female and male|tissue:Olfactory Rosette|treatment:Intranasal PBS|BioSampleModel:Model organism or animal                 Single cell zebrafish olfactory organ: intranasal PBS Control 3 S3 Control 3 S3 Followed Chromium Next GEM Single Cell 3 Reagent Kits v3.1     RNA-Seq TRANSCRIPTOMIC SINGLE CELL PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP287979     Control_3_S3_L004_R1_001.fastq.gz Control_3_S3_L004_R2_001.fastq.gz fastq fastq 59006583476.0 195386038.0 Control 3 S3 L004 R1 001.fastq.gz 0:151 1:151 A:27374753929;C:9460015806;G:9444431483;T:12724779257;N:2603001 151 151     27374753929 9460015806 9444431483 12724779257 2603001 SRX9325177 SRS7549491 SRA1141422 University of New Mexico|Biology University of New Mexico 2 0.0 0.87809 0.0 0.22265 1.0 0.77141   0.54249 151 151 T B mate1 technical by mapping diff illumina novaseq_era unknown random_priming unknown sc single_cell_droplet 10x   Mexico 2020-10-21 Adult Adult Brain Nervous System
61531 61531 SRR12858261 SRX9325176 SRS7549492 SRP287979 PRJNA668529 Single Cell Olfactory Organ of Zebrafish exposed to r Spike from SARS CoV 2 PRJNA668529 Other Captured fresh cells with 10x genomic chromium then sequenced with illumina NovaSeq         Zebrafish Intranasal rSpike 3Day   strain:AB|age:3 Months|sex:female and male|tissue:Olfactory Rosette|treatment:Intranasal 100ng r Spike 3Day|BioSampleModel:Model organism or animal                 Single cell zebrafish olfactory organ: intranasal r Spike 3Day 3Day 2 S8 3Day 2 S8 Followed Chromium Next GEM Single Cell 3 Reagent Kits v3.1     RNA-Seq TRANSCRIPTOMIC SINGLE CELL PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP287979     3Day_4_S8_L004_R1_001.fastq.gz 3Day_4_S8_L004_R2_001.fastq.gz fastq fastq 84540262488.0 279934644.0 3Day 4 S8 L004 R1 001.fastq.gz 0:151 1:151 A:39522904023;C:13210312500;G:13112786947;T:18690553925;N:3705093 151 151     39522904023 13210312500 13112786947 18690553925 3705093 SRX9325176 SRS7549492 SRA1141422 University of New Mexico|Biology University of New Mexico 2 0.0 0.86134 0.0 0.22228 1.0 0.75741   0.53967 151 151 T B mate1 technical by mapping diff illumina novaseq_era unknown random_priming unknown sc single_cell_droplet 10x   Mexico 2020-10-21 Adult Adult Brain Nervous System
61532 61532 SRR12858262 SRX9325175 SRS7549492 SRP287979 PRJNA668529 Single Cell Olfactory Organ of Zebrafish exposed to r Spike from SARS CoV 2 PRJNA668529 Other Captured fresh cells with 10x genomic chromium then sequenced with illumina NovaSeq         Zebrafish Intranasal rSpike 3Day   strain:AB|age:3 Months|sex:female and male|tissue:Olfactory Rosette|treatment:Intranasal 100ng r Spike 3Day|BioSampleModel:Model organism or animal                 Single cell zebrafish olfactory organ: intranasal r Spike 3Day 3Day 3 S7 3Day 3 S7 Followed Chromium Next GEM Single Cell 3 Reagent Kits v3.1     RNA-Seq TRANSCRIPTOMIC SINGLE CELL PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP287979     3Day_3_S7_L004_R1_001.fastq.gz 3Day_3_S7_L004_R2_001.fastq.gz fastq fastq 72504765812.0 240082006.0 3Day 3 S7 L004 R1 001.fastq.gz 0:151 1:151 A:33922644753;C:11322044063;G:11218554755;T:16038363159;N:3159082 151 151     33922644753 11322044063 11218554755 16038363159 3159082 SRX9325175 SRS7549492 SRA1141422 University of New Mexico|Biology University of New Mexico 2 0.0 0.86092 0.0 0.22194 1.0 0.75941   0.54693 151 151 T B mate1 technical by mapping diff illumina novaseq_era unknown random_priming unknown sc single_cell_droplet 10x   Mexico 2020-10-21 Adult Adult Brain Nervous System
61533 61533 SRR12858263 SRX9325174 SRS7549491 SRP287979 PRJNA668529 Single Cell Olfactory Organ of Zebrafish exposed to r Spike from SARS CoV 2 PRJNA668529 Other Captured fresh cells with 10x genomic chromium then sequenced with illumina NovaSeq         Zebrafish intranasal PBS   strain:AB|age:3 Months|sex:female and male|tissue:Olfactory Rosette|treatment:Intranasal PBS|BioSampleModel:Model organism or animal                 Single cell zebrafish olfactory organ: intranasal PBS Control 2 S2 Control 2 S2 Followed Chromium Next GEM Single Cell 3 Reagent Kits v3.1     RNA-Seq TRANSCRIPTOMIC SINGLE CELL PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP287979     Control_2_S2_L004_R1_001.fastq.gz Control_2_S2_L004_R2_001.fastq.gz fastq fastq 64254998894.0 212764897.0 Control 2 S2 L004 R1 001.fastq.gz 0:151 1:151 A:29800534511;C:10295273086;G:10286925663;T:13869445548;N:2820086 151 151     29800534511 10295273086 10286925663 13869445548 2820086 SRX9325174 SRS7549491 SRA1141422 University of New Mexico|Biology University of New Mexico 2 0.0 0.87826 0.0 0.22134 1.0 0.77195   0.54341 151 151 T B mate1 technical by mapping diff illumina novaseq_era unknown random_priming unknown sc single_cell_droplet 10x   Mexico 2020-10-21 Adult Adult Brain Nervous System
61534 61534 SRR12858264 SRX9325173 SRS7549491 SRP287979 PRJNA668529 Single Cell Olfactory Organ of Zebrafish exposed to r Spike from SARS CoV 2 PRJNA668529 Other Captured fresh cells with 10x genomic chromium then sequenced with illumina NovaSeq         Zebrafish intranasal PBS   strain:AB|age:3 Months|sex:female and male|tissue:Olfactory Rosette|treatment:Intranasal PBS|BioSampleModel:Model organism or animal                 Single cell zebrafish olfactory organ: intranasal PBS Control 1 S1 Control 1 S1 Followed Chromium Next GEM Single Cell 3 Reagent Kits v3.1     RNA-Seq TRANSCRIPTOMIC SINGLE CELL PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP287979     Control_1_S1_L004_R1_001.fastq.gz Control_1_S1_L004_R2_001.fastq.gz fastq fastq 69676036606.0 230715353.0 Control 1 S1 L004 R1 001.fastq.gz 0:151 1:151 A:32349942335;C:11154687198;G:11132501059;T:15035845934;N:3060080 151 151     32349942335 11154687198 11132501059 15035845934 3060080 SRX9325173 SRS7549491 SRA1141422 University of New Mexico|Biology University of New Mexico 2 0.0 0.87698 0.0 0.2194 1.0 0.7685   0.53763 151 151 T B mate1 technical by mapping diff illumina novaseq_era unknown random_priming unknown sc single_cell_droplet 10x   Mexico 2020-10-21 Adult Adult Brain Nervous System

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;