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run_metadata

26 rows where experiment.library_selection = "PCR", experiment.platform = "BGISEQ" and tissue_curation = "Heart"

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devstage_curation_coarse 3

devstage_curation 3

tissue_curation_coarse 1

tissue_curation 1

  • Heart · 26 ✖

technology 1

experiment.platform 1

  • BGISEQ · 26 ✖

experiment.library_strategy 1

experiment.library_source 1

experiment.library_selection 1

  • PCR · 26 ✖

experiment.library_layout 1

Link rowid ▼ run.accession experiment.accession sample.accession study.accession bioproject study.title study.alias study.type study.abstract study.attributes study.PMIDs sample.description sample.title sample.alias sample.centername sample.attributes GEOsample.title GEOsample.dataprocessing GEOsample.source GEOsample.treatmentprotocol GEOsample.extractprotocol GEOsample.growthprotocol GEOsample.characteristics GEOsample.accession experiment.title experiment.alias experiment.library_name experiment.design_description experiment.library_construction_protocol experiment.attributes experiment.library_strategy experiment.library_source experiment.library_selection experiment.library_layout experiment.platform experiment.instrument_model experiment.spot_descriptor experiment.study_ref run.title run.attributes run.filename run.semantic_name run.total_bases run.total_spots run.alias run.read_lengths run.base_counts run.r1_length run.r2_length run.r3_length run.r4_length run.Acount run.Ccount run.Gcount run.Tcount run.Ncount run.experiment run.pool_member submission.accession submission.srasource submission.bioprojectsource seqdetective.n_mates seqdetective.mapping_rate.mate1 seqdetective.mapping_rate.mate2 seqdetective.nofeature_rate.mate1 seqdetective.nofeature_rate.mate2 seqdetective.sparsity.mate1 seqdetective.sparsity.mate2 seqdetective.pos_strand_rate.mate1 seqdetective.pos_strand_rate.mate2 seqdetective.readlen.mate1 seqdetective.readlen.mate2 seqdetective.judgement.mate1 seqdetective.judgement.mate2 seqdetective.judgement.reason platform_family instrument_generation read_bias selection_class prep_kit sc_or_bulk tech_class technology tech_variant submission.bioprojectsource.country earliest_date devstage_curation devstage_curation_coarse tissue_curation tissue_curation_coarse
33609 33609 SRR30247666 SRX25709110 SRS22350227 SRP526520 PRJNA1148340 RNA Seq analyses of hey2 mutant and wild type sibling zebrafish hearts PRJNA1148340 Other To assess the effects of Hey2 deficiency we performed transcriptome analyses of hey2 mutant and wild type sibling zebrafish hearts at 3 mpf.       RNA Seq for hey25nt / mutant zebrafish hearts at 3 mpf rep3 KO3   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:OE replicate 3|BioSampleModel:Model organism or animal                 RNA Seq for hey25nt / mutant zebrafish hearts at 3 mpf rep3 hey25nt / replicate 3 hey25nt / replicate 3 RNA Seq for hey25nt / mutant zebrafish hearts at 3 mpf replicate 3     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP526520     KO_3_1.fq.gz KO_3_2.fq.gz fastq fastq 6793426200.0 22644754.0 KO 3 1.fq.gz 0:150 1:150 A:1845779030;C:1550159613;G:1539592354;T:1857860950;N:34253 150 150     1845779030 1550159613 1539592354 1857860950 34253 SRX25709110 SRS22350227 SRA1948261 East China Normal University|School of Life Sciences East China Normal University 2 0.94555 0.92523 0.0631 0.06139 0.76672 0.76968 0.56501 0.57019 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2024-08-15 Adult Adult Heart Cardiovascular System
33610 33610 SRR30247667 SRX25709109 SRS22350226 SRP526520 PRJNA1148340 RNA Seq analyses of hey2 mutant and wild type sibling zebrafish hearts PRJNA1148340 Other To assess the effects of Hey2 deficiency we performed transcriptome analyses of hey2 mutant and wild type sibling zebrafish hearts at 3 mpf.       RNA Seq for hey25nt / mutantzebrafish hearts at 3 mpf rep2 KO2   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:OE replicate 2|BioSampleModel:Model organism or animal                 RNA Seq for hey25nt / mutant zebrafish hearts at 3 mpf rep2 hey25nt / replicate 2 hey25nt / replicate 2 RNA Seq for hey25nt / mutant zebrafish hearts at 3 mpf replicate 2     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP526520     KO_2_1.fq.gz KO_2_2.fq.gz fastq fastq 6577703400.0 21925678.0 KO 2 1.fq.gz 0:150 1:150 A:1795319867;C:1492750718;G:1485718638;T:1803881133;N:33044 150 150     1795319867 1492750718 1485718638 1803881133 33044 SRX25709109 SRS22350226 SRA1948261 East China Normal University|School of Life Sciences East China Normal University 2 0.94565 0.92404 0.06212 0.06008 0.77281 0.77546 0.55478 0.56589 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2024-08-15 Adult Adult Heart Cardiovascular System
33611 33611 SRR30247668 SRX25709108 SRS22350225 SRP526520 PRJNA1148340 RNA Seq analyses of hey2 mutant and wild type sibling zebrafish hearts PRJNA1148340 Other To assess the effects of Hey2 deficiency we performed transcriptome analyses of hey2 mutant and wild type sibling zebrafish hearts at 3 mpf.       RNA Seq for hey25nt / mutant zebrafish hearts at 3 mpf rep1 KO1   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:OE replicate 1|BioSampleModel:Model organism or animal                 RNA Seq for hey25nt / mutant zebrafish hearts at 3 mpf rep1 hey25nt / replicate 1 hey25nt / replicate 1 RNA Seq for hey25nt / mutant zebrafish hearts at 3 mpf replicate 1     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP526520     KO_1_2.fq.gz KO_1_1.fq.gz fastq fastq 6592159500.0 21973865.0 KO 1 1.fq.gz 0:150 1:150 A:1800707634;C:1491918482;G:1484850929;T:1814648405;N:34050 150 150     1800707634 1491918482 1484850929 1814648405 34050 SRX25709108 SRS22350225 SRA1948261 East China Normal University|School of Life Sciences East China Normal University 2 0.94443 0.92689 0.06601 0.06488 0.76883 0.77033 0.58332 0.52175 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2024-08-15 Adult Adult Heart Cardiovascular System
33612 33612 SRR30247669 SRX25709107 SRS22350224 SRP526520 PRJNA1148340 RNA Seq analyses of hey2 mutant and wild type sibling zebrafish hearts PRJNA1148340 Other To assess the effects of Hey2 deficiency we performed transcriptome analyses of hey2 mutant and wild type sibling zebrafish hearts at 3 mpf.       RNA Seq for hey2+/+ zebrafish hearts at 3 mpf rep3 WT3   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:CTL replicate 3|BioSampleModel:Model organism or animal                 RNA Seq for hey2+/+ zebrafish hearts at 3 mpf rep3 hey2+/+ replicate 3 hey2+/+ replicate 3 RNA Seq for hey2+/+ zebrafish hearts at 3 mpf replicate 3     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP526520     WT_3_1.fq.gz WT_3_2.fq.gz fastq fastq 6582842700.0 21942809.0 WT 3 1.fq.gz 0:150 1:150 A:1796301568;C:1494922823;G:1487154319;T:1804427831;N:36159 150 150     1796301568 1494922823 1487154319 1804427831 36159 SRX25709107 SRS22350224 SRA1948261 East China Normal University|School of Life Sciences East China Normal University 2 0.94446 0.92023 0.06492 0.06289 0.76694 0.7699 0.55651 0.53407 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2024-08-15 Adult Adult Heart Cardiovascular System
33613 33613 SRR30247670 SRX25709106 SRS22350223 SRP526520 PRJNA1148340 RNA Seq analyses of hey2 mutant and wild type sibling zebrafish hearts PRJNA1148340 Other To assess the effects of Hey2 deficiency we performed transcriptome analyses of hey2 mutant and wild type sibling zebrafish hearts at 3 mpf.       RNA Seq for hey2+/+ zebrafish hearts at 3 mpf rep2 WT2   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:CTL replicate 2|BioSampleModel:Model organism or animal                 RNA Seq for hey2+/+ zebrafish hearts at 3 mpf rep2 hey2+/+ replicate 2 hey2+/+ replicate 2 RNA Seq for hey2+/+ zebrafish hearts at 3 mpf replicate 2     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP526520     WT_2_2.fq.gz WT_2_1.fq.gz fastq fastq 6632526000.0 22108420.0 WT 2 1.fq.gz 0:150 1:150 A:1811392253;C:1505075703;G:1495091968;T:1820928778;N:37298 150 150     1811392253 1505075703 1495091968 1820928778 37298 SRX25709106 SRS22350223 SRA1948261 East China Normal University|School of Life Sciences East China Normal University 2 0.94532 0.92096 0.06496 0.06227 0.76564 0.76909 0.56754 0.57117 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2024-08-15 Adult Adult Heart Cardiovascular System
33614 33614 SRR30247671 SRX25709105 SRS22350222 SRP526520 PRJNA1148340 RNA Seq analyses of hey2 mutant and wild type sibling zebrafish hearts PRJNA1148340 Other To assess the effects of Hey2 deficiency we performed transcriptome analyses of hey2 mutant and wild type sibling zebrafish hearts at 3 mpf.       RNA Seq for hey2+/+ zebrafish hearts at 3 mpf rep1 WT1   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:CTL replicate 1|BioSampleModel:Model organism or animal                 RNA Seq for hey2+/+ zebrafish hearts at 3 mpf rep1 hey2+/+ replicate 1 hey2+/+ replicate 1 RNA Seq for hey2+/+ zebrafish hearts at 3 mpf replicate 1     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP526520     WT_1_1.fq.gz WT_1_2.fq.gz fastq fastq 6601461900.0 22004873.0 WT 1 1.fq.gz 0:150 1:150 A:1816453592;C:1485325900;G:1476423985;T:1823223402;N:35021 150 150     1816453592 1485325900 1476423985 1823223402 35021 SRX25709105 SRS22350222 SRA1948261 East China Normal University|School of Life Sciences East China Normal University 2 0.9482 0.92609 0.05744 0.0553 0.77423 0.77699 0.53884 0.54075 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2024-08-15 Adult Adult Heart Cardiovascular System
70178 70178 SRR19568478 SRX15620532 SRS13321067 SRP378839 PRJNA846550 The mechanism of AHR mediated disturbance of lipid metabolism in dioxin induced cardiac development injury in zebrafish PRJNA846550 Other Dioxin like environmental pollutants are chemical substances with persistent ability to cause environmental damage which have a vital impact on the growth and development of human and other organisms. Previous studies have confirmed that dioxin like environmental pollutants are cardiotoxic but the molecular mechanism is still unclear.         TCDD 4   strain:AB|age:5 dpf|dev stage:5 dpf|sex:not determined|tissue:heart|id:8|BioSampleModel:Model organism or animal                 RNA seq of zebrafish Danio rerio: larval heart of TCDD treatment TCDD 4 TCDD 4 RNA seq of zebrafish Danio rerio: replicate 4 of TCDD treatment     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP378839     TCDD_4_1.fq.gz TCDD_4_2.fq.gz fastq fastq 6664935600.0 44432904.0 TCDD 4 1.fq.gz 0:150 1:150 A:1778771695;C:1547959320;G:1547444025;T:1790760560;N:0 150 150     1778771695 1547959320 1547444025 1790760560 0 SRX15620532 SRS13321067 SRA1432977 Shandong University|School of basic medical sciences Shandong University 1 0.93639   0.07898   0.67649   0.51984   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2022-06-07 Larval Larval Heart Cardiovascular System
70179 70179 SRR19568479 SRX15620531 SRS13321066 SRP378839 PRJNA846550 The mechanism of AHR mediated disturbance of lipid metabolism in dioxin induced cardiac development injury in zebrafish PRJNA846550 Other Dioxin like environmental pollutants are chemical substances with persistent ability to cause environmental damage which have a vital impact on the growth and development of human and other organisms. Previous studies have confirmed that dioxin like environmental pollutants are cardiotoxic but the molecular mechanism is still unclear.         TCDD 3   strain:AB|age:5 dpf|dev stage:5 dpf|sex:not determined|tissue:heart|id:7|BioSampleModel:Model organism or animal                 RNA seq of zebrafish Danio rerio: larval heart of TCDD treatment TCDD 3 TCDD 3 RNA seq of zebrafish Danio rerio: replicate 3 of TCDD treatment     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP378839     TCDD_3_1.fq.gz TCDD_3_2.fq.gz fastq fastq 6763596300.0 45090642.0 TCDD 3 1.fq.gz 0:150 1:150 A:1802620229;C:1572061293;G:1575663838;T:1813250940;N:0 150 150     1802620229 1572061293 1575663838 1813250940 0 SRX15620531 SRS13321066 SRA1432977 Shandong University|School of basic medical sciences Shandong University 1 0.93871   0.07491   0.67754   0.51592   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2022-06-07 Larval Larval Heart Cardiovascular System
70180 70180 SRR19568480 SRX15620530 SRS13321065 SRP378839 PRJNA846550 The mechanism of AHR mediated disturbance of lipid metabolism in dioxin induced cardiac development injury in zebrafish PRJNA846550 Other Dioxin like environmental pollutants are chemical substances with persistent ability to cause environmental damage which have a vital impact on the growth and development of human and other organisms. Previous studies have confirmed that dioxin like environmental pollutants are cardiotoxic but the molecular mechanism is still unclear.         TCDD 2   strain:AB|age:5 dpf|dev stage:5 dpf|sex:not determined|tissue:heart|id:6|BioSampleModel:Model organism or animal                 RNA seq of zebrafish Danio rerio: larval heart of TCDD treatment TCDD 2 TCDD 2 RNA seq of zebrafish Danio rerio: replicate 2 of TCDD treatment     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP378839     TCDD_2_1.fq.gz TCDD_2_2.fq.gz fastq fastq 6628062600.0 44187084.0 TCDD 2 1.fq.gz 0:150 1:150 A:1772545581;C:1536779192;G:1535280305;T:1783457522;N:0 150 150     1772545581 1536779192 1535280305 1783457522 0 SRX15620530 SRS13321065 SRA1432977 Shandong University|School of basic medical sciences Shandong University 1 0.93556   0.07257   0.68067   0.51787   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2022-06-07 Larval Larval Heart Cardiovascular System
70181 70181 SRR19568481 SRX15620529 SRS13321064 SRP378839 PRJNA846550 The mechanism of AHR mediated disturbance of lipid metabolism in dioxin induced cardiac development injury in zebrafish PRJNA846550 Other Dioxin like environmental pollutants are chemical substances with persistent ability to cause environmental damage which have a vital impact on the growth and development of human and other organisms. Previous studies have confirmed that dioxin like environmental pollutants are cardiotoxic but the molecular mechanism is still unclear.         TCDD 1   strain:AB|age:5 dpf|dev stage:5 dpf|sex:not determined|tissue:heart|id:5|BioSampleModel:Model organism or animal                 RNA seq of zebrafish Danio rerio: larval heart of TCDD treatment TCDD 1 TCDD 1 RNA seq of zebrafish Danio rerio: replicate 1 of TCDD treatment     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP378839     TCDD_1_1.fq.gz TCDD_1_2.fq.gz fastq fastq 6661439100.0 44409594.0 TCDD 1 1.fq.gz 0:150 1:150 A:1776797062;C:1548148693;G:1547340992;T:1789152353;N:0 150 150     1776797062 1548148693 1547340992 1789152353 0 SRX15620529 SRS13321064 SRA1432977 Shandong University|School of basic medical sciences Shandong University 1 0.93716   0.07287   0.67487   0.50549   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2022-06-07 Larval Larval Heart Cardiovascular System
70182 70182 SRR19568482 SRX15620528 SRS13321062 SRP378839 PRJNA846550 The mechanism of AHR mediated disturbance of lipid metabolism in dioxin induced cardiac development injury in zebrafish PRJNA846550 Other Dioxin like environmental pollutants are chemical substances with persistent ability to cause environmental damage which have a vital impact on the growth and development of human and other organisms. Previous studies have confirmed that dioxin like environmental pollutants are cardiotoxic but the molecular mechanism is still unclear.         Ctrl 4   strain:AB|age:5 dpf|dev stage:5 dpf|sex:not determined|tissue:heart|id:4|BioSampleModel:Model organism or animal                 RNA seq of zebrafish Danio rerio: larval heart of control Ctrl 4 Ctrl 4 RNA seq of zebrafish Danio rerio: replicate 4 of control     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP378839     Ctrl_4_1.fq.gz Ctrl_4_2.fq.gz fastq fastq 6737187300.0 44914582.0 Ctrl 4 1.fq.gz 0:150 1:150 A:1792212366;C:1570555803;G:1570692729;T:1803726402;N:0 150 150     1792212366 1570555803 1570692729 1803726402 0 SRX15620528 SRS13321062 SRA1432977 Shandong University|School of basic medical sciences Shandong University 1 0.94104   0.07451   0.67821   0.51308   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2022-06-07 Larval Larval Heart Cardiovascular System
70183 70183 SRR19568483 SRX15620527 SRS13321063 SRP378839 PRJNA846550 The mechanism of AHR mediated disturbance of lipid metabolism in dioxin induced cardiac development injury in zebrafish PRJNA846550 Other Dioxin like environmental pollutants are chemical substances with persistent ability to cause environmental damage which have a vital impact on the growth and development of human and other organisms. Previous studies have confirmed that dioxin like environmental pollutants are cardiotoxic but the molecular mechanism is still unclear.         Ctrl 3   strain:AB|age:5 dpf|dev stage:5 dpf|sex:not determined|tissue:heart|id:3|BioSampleModel:Model organism or animal                 RNA seq of zebrafish Danio rerio: larval heart of control Ctrl 3 Ctrl 3 RNA seq of zebrafish Danio rerio: replicate 3 of control     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP378839     Ctrl_3_1.fq.gz Ctrl_3_2.fq.gz fastq fastq 6731291400.0 44875276.0 Ctrl 3 1.fq.gz 0:150 1:150 A:1790044747;C:1568544653;G:1569058962;T:1803643038;N:0 150 150     1790044747 1568544653 1569058962 1803643038 0 SRX15620527 SRS13321063 SRA1432977 Shandong University|School of basic medical sciences Shandong University 1 0.94057   0.06779   0.68162   0.51945   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2022-06-07 Larval Larval Heart Cardiovascular System
70184 70184 SRR19568484 SRX15620526 SRS13321060 SRP378839 PRJNA846550 The mechanism of AHR mediated disturbance of lipid metabolism in dioxin induced cardiac development injury in zebrafish PRJNA846550 Other Dioxin like environmental pollutants are chemical substances with persistent ability to cause environmental damage which have a vital impact on the growth and development of human and other organisms. Previous studies have confirmed that dioxin like environmental pollutants are cardiotoxic but the molecular mechanism is still unclear.         Ctrl 2   strain:AB|age:5 dpf|dev stage:5 dpf|sex:not determined|tissue:heart|id:2|BioSampleModel:Model organism or animal                 RNA seq of zebrafish Danio rerio: larval heart of control Ctrl 2 Ctrl 2 RNA seq of zebrafish Danio rerio: replicate 2 of control     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP378839     Ctrl_2_1.fq.gz Ctrl_2_2.fq.gz fastq fastq 6698026800.0 44653512.0 Ctrl 2 1.fq.gz 0:150 1:150 A:1795059523;C:1549817920;G:1547008645;T:1806140712;N:0 150 150     1795059523 1549817920 1547008645 1806140712 0 SRX15620526 SRS13321060 SRA1432977 Shandong University|School of basic medical sciences Shandong University 1 0.93483   0.07839   0.67491   0.52108   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2022-06-07 Larval Larval Heart Cardiovascular System
70185 70185 SRR19568485 SRX15620525 SRS13321061 SRP378839 PRJNA846550 The mechanism of AHR mediated disturbance of lipid metabolism in dioxin induced cardiac development injury in zebrafish PRJNA846550 Other Dioxin like environmental pollutants are chemical substances with persistent ability to cause environmental damage which have a vital impact on the growth and development of human and other organisms. Previous studies have confirmed that dioxin like environmental pollutants are cardiotoxic but the molecular mechanism is still unclear.         Ctrl 1   strain:AB|age:5 dpf|dev stage:5 dpf|sex:not determined|tissue:heart|id:1|BioSampleModel:Model organism or animal                 RNA seq of zebrafish Danio rerio: larval heart of control Ctrl 1 Ctrl 1 RNA seq of zebrafish Danio rerio: replicate 1 of control     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP378839     Ctrl_1_1.fq.gz Ctrl_1_2.fq.gz fastq fastq 6735053100.0 44900354.0 Ctrl 1 1.fq.gz 0:150 1:150 A:1769863183;C:1592773959;G:1591379310;T:1781036648;N:0 150 150     1769863183 1592773959 1591379310 1781036648 0 SRX15620525 SRS13321061 SRA1432977 Shandong University|School of basic medical sciences Shandong University 1 0.94397   0.05544   0.69749   0.51432   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2022-06-07 Larval Larval Heart Cardiovascular System
76452 76452 SRR24950188 SRX20708357 SRS18001302 SRP444408 PRJNA984676 RNA Seq analyses of myocardium specific hey2 overexpressing zebrafish hearts and Adv Hey2 infected NRVMs PRJNA984676 Other To elucidate the molecular underpinning of cardiac dilation and myocardial mitochondrial dysfunction caused by hey2 induction we conducted RNA seq analyses in hey2 overexpression zebrafish hearts and control littermate hearts at 1 week or 1 month post 4 HT treatments. To further investigate the impact of Hey2 in mammalian cardiomyocytes and mitochondria we performed comparative analysis of transcriptome profiles on NRVMs infected with adenovirus containing Hey2 Adv Hey2 or vectors Adv Ctrl.       RNA Seq for myocardium specific hey2 overexpressing heart at 1 week post 4 HT treatments rep1 OE1w1   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:1 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:OE1w replicate 1|BioSampleModel:Model organism or animal                 RNA Seq for myocardium specific hey2 overexpressing heart at 1 week post 4 HT treatments rep1 OE1w replicate 1 OE1w replicate 1 RNA Seq for myocardium specific hey2 overexpressing heart at 1 week post 4 HT treatments replicate 1     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP444408     OE1w1_1.fq.gz OE1w1_2.fq.gz fastq fastq 6792141900.0 22640473.0 OE1w1 1.fq.gz 0:150 1:150 A:1821318465;C:1573309073;G:1556399365;T:1841095017;N:19980 150 150     1821318465 1573309073 1556399365 1841095017 19980 SRX20708357 SRS18001302 SRA1657339 East China Normal University|School of Life Sciences East China Normal University 2 0.92576 0.91367 0.07095 0.07022 0.74884 0.75012 0.52564 0.52623 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2023-06-16 Juvenile Juvenile Heart Cardiovascular System
76453 76453 SRR24950189 SRX20708356 SRS18001301 SRP444408 PRJNA984676 RNA Seq analyses of myocardium specific hey2 overexpressing zebrafish hearts and Adv Hey2 infected NRVMs PRJNA984676 Other To elucidate the molecular underpinning of cardiac dilation and myocardial mitochondrial dysfunction caused by hey2 induction we conducted RNA seq analyses in hey2 overexpression zebrafish hearts and control littermate hearts at 1 week or 1 month post 4 HT treatments. To further investigate the impact of Hey2 in mammalian cardiomyocytes and mitochondria we performed comparative analysis of transcriptome profiles on NRVMs infected with adenovirus containing Hey2 Adv Hey2 or vectors Adv Ctrl.       RNA Seq for control littermate hearts at 1 week post 4 HT treatments rep3 CTL1w3   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:1 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:CTL1w replicate 3|BioSampleModel:Model organism or animal                 RNA Seq for control littermate hearts at 1 week post 4 HT treatments rep3 CTL1w replicate 3 CTL1w replicate 3 RNA Seq for control littermate hearts at 1 week post 4 HT treatments replicate 3     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP444408     CTL1w3_2.fq.gz CTL1w3_1.fq.gz fastq fastq 6615956700.0 22053189.0 CTL1w3 1.fq.gz 0:150 1:150 A:1790825663;C:1516487260;G:1497904437;T:1810720169;N:19171 150 150     1790825663 1516487260 1497904437 1810720169 19171 SRX20708356 SRS18001301 SRA1657339 East China Normal University|School of Life Sciences East China Normal University 2 0.93183 0.91562 0.07118 0.07012 0.7655 0.7682 0.53912 0.52899 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2023-06-16 Juvenile Juvenile Heart Cardiovascular System
76454 76454 SRR24950190 SRX20708355 SRS18001300 SRP444408 PRJNA984676 RNA Seq analyses of myocardium specific hey2 overexpressing zebrafish hearts and Adv Hey2 infected NRVMs PRJNA984676 Other To elucidate the molecular underpinning of cardiac dilation and myocardial mitochondrial dysfunction caused by hey2 induction we conducted RNA seq analyses in hey2 overexpression zebrafish hearts and control littermate hearts at 1 week or 1 month post 4 HT treatments. To further investigate the impact of Hey2 in mammalian cardiomyocytes and mitochondria we performed comparative analysis of transcriptome profiles on NRVMs infected with adenovirus containing Hey2 Adv Hey2 or vectors Adv Ctrl.       RNA Seq for control littermate hearts at 1 week post 4 HT treatments rep2 CTL1w2   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:1 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:CTL1w replicate 2|BioSampleModel:Model organism or animal                 RNA Seq for control littermate hearts at 1 week post 4 HT treatments rep2 CTL1w replicate 2 CTL1w replicate 2 RNA Seq for control littermate hearts at 1 week post 4 HT treatments replicate 2     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP444408     CTL1w2_1.fq.gz CTL1w2_2.fq.gz fastq fastq 6582133800.0 21940446.0 CTL1w2 1.fq.gz 0:150 1:150 A:1766322301;C:1524014072;G:1506429130;T:1785350030;N:18267 150 150     1766322301 1524014072 1506429130 1785350030 18267 SRX20708355 SRS18001300 SRA1657339 East China Normal University|School of Life Sciences East China Normal University 2 0.93867 0.92389 0.06545 0.06458 0.76357 0.76583 0.53821 0.54255 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2023-06-16 Juvenile Juvenile Heart Cardiovascular System
76455 76455 SRR24950191 SRX20708354 SRS18001299 SRP444408 PRJNA984676 RNA Seq analyses of myocardium specific hey2 overexpressing zebrafish hearts and Adv Hey2 infected NRVMs PRJNA984676 Other To elucidate the molecular underpinning of cardiac dilation and myocardial mitochondrial dysfunction caused by hey2 induction we conducted RNA seq analyses in hey2 overexpression zebrafish hearts and control littermate hearts at 1 week or 1 month post 4 HT treatments. To further investigate the impact of Hey2 in mammalian cardiomyocytes and mitochondria we performed comparative analysis of transcriptome profiles on NRVMs infected with adenovirus containing Hey2 Adv Hey2 or vectors Adv Ctrl.       RNA Seq for control littermate hearts at 1 week post 4 HT treatments rep1 CTL1w1   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:1 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:CTL1w replicate 1|BioSampleModel:Model organism or animal                 RNA Seq for control littermate hearts at 1 week post 4 HT treatments rep1 CTL1w replicate 1 CTL1w replicate 1 RNA Seq for control littermate hearts at 1 week post 4 HT treatments replicate 1     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP444408     CTL1w1_2.fq.gz CTL1w1_1.fq.gz fastq fastq 6781172100.0 22603907.0 CTL1w1 1.fq.gz 0:150 1:150 A:1804085074;C:1581571692;G:1567430366;T:1828066356;N:18612 150 150     1804085074 1581571692 1567430366 1828066356 18612 SRX20708354 SRS18001299 SRA1657339 East China Normal University|School of Life Sciences East China Normal University 2 0.93867 0.91921 0.06237 0.06146 0.75858 0.76246 0.53972 0.53069 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2023-06-16 Juvenile Juvenile Heart Cardiovascular System
76456 76456 SRR24950192 SRX20708353 SRS18001298 SRP444408 PRJNA984676 RNA Seq analyses of myocardium specific hey2 overexpressing zebrafish hearts and Adv Hey2 infected NRVMs PRJNA984676 Other To elucidate the molecular underpinning of cardiac dilation and myocardial mitochondrial dysfunction caused by hey2 induction we conducted RNA seq analyses in hey2 overexpression zebrafish hearts and control littermate hearts at 1 week or 1 month post 4 HT treatments. To further investigate the impact of Hey2 in mammalian cardiomyocytes and mitochondria we performed comparative analysis of transcriptome profiles on NRVMs infected with adenovirus containing Hey2 Adv Hey2 or vectors Adv Ctrl.       RNA Seq for myocardium specific hey2 overexpressing hearts at 2 month post 4 HT treatments rep3 OE3   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:OE replicate 3|BioSampleModel:Model organism or animal                 RNA Seq for myocardium specific hey2 overexpressing hearts at 1 month post 4 HT treatments rep3 OE replicate 3 OE replicate 3 RNA Seq for myocardium specific hey2 overexpressing hearts at 1 month post 4 HT treatments replicate 3     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP444408     OE3_1.fq.gz OE3_2.fq.gz fastq fastq 6698218800.0 22327396.0 OE3 1.fq.gz 0:150 1:150 A:1810250125;C:1538223397;G:1526099522;T:1823631856;N:13900 150 150     1810250125 1538223397 1526099522 1823631856 13900 SRX20708353 SRS18001298 SRA1657339 East China Normal University|School of Life Sciences East China Normal University 2 0.94309 0.93987 0.07727 0.07734 0.75645 0.75659 0.5045 0.52615 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2023-06-16 Adult Adult Heart Cardiovascular System
76457 76457 SRR24950193 SRX20708352 SRS18001297 SRP444408 PRJNA984676 RNA Seq analyses of myocardium specific hey2 overexpressing zebrafish hearts and Adv Hey2 infected NRVMs PRJNA984676 Other To elucidate the molecular underpinning of cardiac dilation and myocardial mitochondrial dysfunction caused by hey2 induction we conducted RNA seq analyses in hey2 overexpression zebrafish hearts and control littermate hearts at 1 week or 1 month post 4 HT treatments. To further investigate the impact of Hey2 in mammalian cardiomyocytes and mitochondria we performed comparative analysis of transcriptome profiles on NRVMs infected with adenovirus containing Hey2 Adv Hey2 or vectors Adv Ctrl.       RNA Seq for myocardium specific hey2 overexpressing hearts at 2 month post 4 HT treatments rep2 OE2   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:OE replicate 2|BioSampleModel:Model organism or animal                 RNA Seq for myocardium specific hey2 overexpressing hearts at 1 month post 4 HT treatments rep2 OE replicate 2 OE replicate 2 RNA Seq for myocardium specific hey2 overexpressing hearts at 1 month post 4 HT treatments replicate 2     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP444408     OE2_2.fq.gz OE2_1.fq.gz fastq fastq 6714114300.0 22380381.0 OE2 1.fq.gz 0:150 1:150 A:1821324029;C:1535274751;G:1521032470;T:1836469467;N:13583 150 150     1821324029 1535274751 1521032470 1836469467 13583 SRX20708352 SRS18001297 SRA1657339 East China Normal University|School of Life Sciences East China Normal University 2 0.9438 0.94081 0.07627 0.07672 0.75116 0.75221 0.50222 0.53794 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2023-06-16 Adult Adult Heart Cardiovascular System
76458 76458 SRR24950194 SRX20708351 SRS18001296 SRP444408 PRJNA984676 RNA Seq analyses of myocardium specific hey2 overexpressing zebrafish hearts and Adv Hey2 infected NRVMs PRJNA984676 Other To elucidate the molecular underpinning of cardiac dilation and myocardial mitochondrial dysfunction caused by hey2 induction we conducted RNA seq analyses in hey2 overexpression zebrafish hearts and control littermate hearts at 1 week or 1 month post 4 HT treatments. To further investigate the impact of Hey2 in mammalian cardiomyocytes and mitochondria we performed comparative analysis of transcriptome profiles on NRVMs infected with adenovirus containing Hey2 Adv Hey2 or vectors Adv Ctrl.       RNA Seq for myocardium specific hey2 overexpressing hearts at 2 month post 4 HT treatments rep1 OE1   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:OE replicate 1|BioSampleModel:Model organism or animal                 RNA Seq for myocardium specific hey2 overexpressing hearts at 1 month post 4 HT treatments rep1 OE replicate 1 OE replicate 1 RNA Seq for myocardium specific hey2 overexpressing hearts at 1 month post 4 HT treatments replicate 1     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP444408     OE1_2.fq.gz OE1_1.fq.gz fastq fastq 6717241200.0 22390804.0 OE1 1.fq.gz 0:150 1:150 A:1820907924;C:1536957701;G:1517754438;T:1841608834;N:12303 150 150     1820907924 1536957701 1517754438 1841608834 12303 SRX20708351 SRS18001296 SRA1657339 East China Normal University|School of Life Sciences East China Normal University 2 0.94313 0.94062 0.07826 0.07784 0.75526 0.7556 0.52759 0.53976 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2023-06-16 Adult Adult Heart Cardiovascular System
76459 76459 SRR24950195 SRX20708350 SRS18001294 SRP444408 PRJNA984676 RNA Seq analyses of myocardium specific hey2 overexpressing zebrafish hearts and Adv Hey2 infected NRVMs PRJNA984676 Other To elucidate the molecular underpinning of cardiac dilation and myocardial mitochondrial dysfunction caused by hey2 induction we conducted RNA seq analyses in hey2 overexpression zebrafish hearts and control littermate hearts at 1 week or 1 month post 4 HT treatments. To further investigate the impact of Hey2 in mammalian cardiomyocytes and mitochondria we performed comparative analysis of transcriptome profiles on NRVMs infected with adenovirus containing Hey2 Adv Hey2 or vectors Adv Ctrl.       RNA Seq for control littermate hearts at 2 month post 4 HT treatments rep3 CTL3   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:CTL replicate 3|BioSampleModel:Model organism or animal                 RNA Seq for control littermate hearts at 1 month post 4 HT treatments rep3 CTL replicate 3 CTL replicate 3 RNA Seq for control littermate hearts at 1 month post 4 HT treatments replicate 3     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP444408     CTL3_1.fq.gz CTL3_2.fq.gz fastq fastq 6726357300.0 22421191.0 CTL3 1.fq.gz 0:150 1:150 A:1851349315;C:1512108580;G:1497745189;T:1865140192;N:14024 150 150     1851349315 1512108580 1497745189 1865140192 14024 SRX20708350 SRS18001294 SRA1657339 East China Normal University|School of Life Sciences East China Normal University 2 0.94596 0.94425 0.06888 0.0684 0.76368 0.76493 0.51461 0.51708 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2023-06-16 Adult Adult Heart Cardiovascular System
76460 76460 SRR24950198 SRX20708347 SRS18001292 SRP444408 PRJNA984676 RNA Seq analyses of myocardium specific hey2 overexpressing zebrafish hearts and Adv Hey2 infected NRVMs PRJNA984676 Other To elucidate the molecular underpinning of cardiac dilation and myocardial mitochondrial dysfunction caused by hey2 induction we conducted RNA seq analyses in hey2 overexpression zebrafish hearts and control littermate hearts at 1 week or 1 month post 4 HT treatments. To further investigate the impact of Hey2 in mammalian cardiomyocytes and mitochondria we performed comparative analysis of transcriptome profiles on NRVMs infected with adenovirus containing Hey2 Adv Hey2 or vectors Adv Ctrl.       RNA Seq for myocardium specific hey2 overexpressing heart at 1 week post 4 HT treatments rep3 OE1w3   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:1 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:OE1w replicate 3|BioSampleModel:Model organism or animal                 RNA Seq for myocardium specific hey2 overexpressing heart at 1 week post 4 HT treatments rep3 OE1w replicate 3 OE1w replicate 3 RNA Seq for myocardium specific hey2 overexpressing heart at 1 week post 4 HT treatments replicate 3     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP444408     OE1w3_2.fq.gz OE1w3_1.fq.gz fastq fastq 6593130600.0 21977102.0 OE1w3 1.fq.gz 0:150 1:150 A:1770061078;C:1529682678;G:1510949508;T:1782338558;N:98778 150 150     1770061078 1529682678 1510949508 1782338558 98778 SRX20708347 SRS18001292 SRA1657339 East China Normal University|School of Life Sciences East China Normal University 2 0.93503 0.922 0.06588 0.06574 0.7503 0.75201 0.52969 0.53743 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2023-06-16 Juvenile Juvenile Heart Cardiovascular System
76461 76461 SRR24950199 SRX20708346 SRS18001291 SRP444408 PRJNA984676 RNA Seq analyses of myocardium specific hey2 overexpressing zebrafish hearts and Adv Hey2 infected NRVMs PRJNA984676 Other To elucidate the molecular underpinning of cardiac dilation and myocardial mitochondrial dysfunction caused by hey2 induction we conducted RNA seq analyses in hey2 overexpression zebrafish hearts and control littermate hearts at 1 week or 1 month post 4 HT treatments. To further investigate the impact of Hey2 in mammalian cardiomyocytes and mitochondria we performed comparative analysis of transcriptome profiles on NRVMs infected with adenovirus containing Hey2 Adv Hey2 or vectors Adv Ctrl.       RNA Seq for myocardium specific hey2 overexpressing heart at 1 week post 4 HT treatments rep2 OE1w2   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:1 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:OE1w replicate 2|BioSampleModel:Model organism or animal                 RNA Seq for myocardium specific hey2 overexpressing heart at 1 week post 4 HT treatments rep2 OE1w replicate 2 OE1w replicate 2 RNA Seq for myocardium specific hey2 overexpressing heart at 1 week post 4 HT treatments replicate 2     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP444408     OE1w2_2.fq.gz OE1w2_1.fq.gz fastq fastq 6742724700.0 22475749.0 OE1w2 1.fq.gz 0:150 1:150 A:1802906309;C:1568304698;G:1553625077;T:1817795677;N:92939 150 150     1802906309 1568304698 1553625077 1817795677 92939 SRX20708346 SRS18001291 SRA1657339 East China Normal University|School of Life Sciences East China Normal University 2 0.93354 0.91844 0.06989 0.0686 0.74665 0.74888 0.52723 0.52812 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2023-06-16 Juvenile Juvenile Heart Cardiovascular System
76462 76462 SRR24950200 SRX20708345 SRS18001290 SRP444408 PRJNA984676 RNA Seq analyses of myocardium specific hey2 overexpressing zebrafish hearts and Adv Hey2 infected NRVMs PRJNA984676 Other To elucidate the molecular underpinning of cardiac dilation and myocardial mitochondrial dysfunction caused by hey2 induction we conducted RNA seq analyses in hey2 overexpression zebrafish hearts and control littermate hearts at 1 week or 1 month post 4 HT treatments. To further investigate the impact of Hey2 in mammalian cardiomyocytes and mitochondria we performed comparative analysis of transcriptome profiles on NRVMs infected with adenovirus containing Hey2 Adv Hey2 or vectors Adv Ctrl.       RNA Seq for control littermate hearts at 2 month post 4 HT treatments rep2 CTL2   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:CTL replicate 2|BioSampleModel:Model organism or animal                 RNA Seq for control littermate hearts at 1 month post 4 HT treatments rep2 CTL replicate 2 CTL replicate 2 RNA Seq for control littermate hearts at 1 month post 4 HT treatments replicate 2     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP444408     CTL2_2.fq.gz CTL2_1.fq.gz fastq fastq 6733756500.0 22445855.0 CTL2 1.fq.gz 0:150 1:150 A:1852262818;C:1514940822;G:1497196598;T:1869342344;N:13918 150 150     1852262818 1514940822 1497196598 1869342344 13918 SRX20708345 SRS18001290 SRA1657339 East China Normal University|School of Life Sciences East China Normal University 2 0.94813 0.94562 0.07048 0.06993 0.76049 0.76039 0.51828 0.52084 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2023-06-16 Adult Adult Heart Cardiovascular System
76463 76463 SRR24950201 SRX20708344 SRS18001289 SRP444408 PRJNA984676 RNA Seq analyses of myocardium specific hey2 overexpressing zebrafish hearts and Adv Hey2 infected NRVMs PRJNA984676 Other To elucidate the molecular underpinning of cardiac dilation and myocardial mitochondrial dysfunction caused by hey2 induction we conducted RNA seq analyses in hey2 overexpression zebrafish hearts and control littermate hearts at 1 week or 1 month post 4 HT treatments. To further investigate the impact of Hey2 in mammalian cardiomyocytes and mitochondria we performed comparative analysis of transcriptome profiles on NRVMs infected with adenovirus containing Hey2 Adv Hey2 or vectors Adv Ctrl.       RNA Seq for control littermate hearts at 2 month post 4 HT treatments rep1 CTL1   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:CTL replicate 1|BioSampleModel:Model organism or animal                 RNA Seq for control littermate hearts at 1 month post 4 HT treatments rep1 CTL replicate 1 CTL replicate 1 RNA Seq for control littermate hearts at 1 month post 4 HT treatments replicate 1     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP444408     CTL1_1.fq.gz CTL1_2.fq.gz fastq fastq 6707934300.0 22359781.0 CTL1 1.fq.gz 0:150 1:150 A:1839600655;C:1511741414;G:1501312980;T:1855265253;N:13998 150 150     1839600655 1511741414 1501312980 1855265253 13998 SRX20708344 SRS18001289 SRA1657339 East China Normal University|School of Life Sciences East China Normal University 2 0.94692 0.94575 0.06938 0.06922 0.76613 0.76654 0.51238 0.49316 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2023-06-16 Adult Adult Heart Cardiovascular System

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;