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50 rows where experiment.library_selection = "PCR" and experiment.platform = "BGISEQ"

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tissue_curation 4

devstage_curation_coarse 4

devstage_curation 4

experiment.library_layout 2

technology 1

experiment.platform 1

  • BGISEQ · 50 ✖

experiment.library_strategy 1

experiment.library_source 1

experiment.library_selection 1

  • PCR · 50 ✖
Link rowid ▼ run.accession experiment.accession sample.accession study.accession bioproject study.title study.alias study.type study.abstract study.attributes study.PMIDs sample.description sample.title sample.alias sample.centername sample.attributes GEOsample.title GEOsample.dataprocessing GEOsample.source GEOsample.treatmentprotocol GEOsample.extractprotocol GEOsample.growthprotocol GEOsample.characteristics GEOsample.accession experiment.title experiment.alias experiment.library_name experiment.design_description experiment.library_construction_protocol experiment.attributes experiment.library_strategy experiment.library_source experiment.library_selection experiment.library_layout experiment.platform experiment.instrument_model experiment.spot_descriptor experiment.study_ref run.title run.attributes run.filename run.semantic_name run.total_bases run.total_spots run.alias run.read_lengths run.base_counts run.r1_length run.r2_length run.r3_length run.r4_length run.Acount run.Ccount run.Gcount run.Tcount run.Ncount run.experiment run.pool_member submission.accession submission.srasource submission.bioprojectsource seqdetective.n_mates seqdetective.mapping_rate.mate1 seqdetective.mapping_rate.mate2 seqdetective.nofeature_rate.mate1 seqdetective.nofeature_rate.mate2 seqdetective.sparsity.mate1 seqdetective.sparsity.mate2 seqdetective.pos_strand_rate.mate1 seqdetective.pos_strand_rate.mate2 seqdetective.readlen.mate1 seqdetective.readlen.mate2 seqdetective.judgement.mate1 seqdetective.judgement.mate2 seqdetective.judgement.reason platform_family instrument_generation read_bias selection_class prep_kit sc_or_bulk tech_class technology tech_variant submission.bioprojectsource.country earliest_date devstage_curation devstage_curation_coarse tissue_curation tissue_curation_coarse
33609 33609 SRR30247666 SRX25709110 SRS22350227 SRP526520 PRJNA1148340 RNA Seq analyses of hey2 mutant and wild type sibling zebrafish hearts PRJNA1148340 Other To assess the effects of Hey2 deficiency we performed transcriptome analyses of hey2 mutant and wild type sibling zebrafish hearts at 3 mpf.       RNA Seq for hey25nt / mutant zebrafish hearts at 3 mpf rep3 KO3   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:OE replicate 3|BioSampleModel:Model organism or animal                 RNA Seq for hey25nt / mutant zebrafish hearts at 3 mpf rep3 hey25nt / replicate 3 hey25nt / replicate 3 RNA Seq for hey25nt / mutant zebrafish hearts at 3 mpf replicate 3     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP526520     KO_3_1.fq.gz KO_3_2.fq.gz fastq fastq 6793426200.0 22644754.0 KO 3 1.fq.gz 0:150 1:150 A:1845779030;C:1550159613;G:1539592354;T:1857860950;N:34253 150 150     1845779030 1550159613 1539592354 1857860950 34253 SRX25709110 SRS22350227 SRA1948261 East China Normal University|School of Life Sciences East China Normal University 2 0.94555 0.92523 0.0631 0.06139 0.76672 0.76968 0.56501 0.57019 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2024-08-15 Adult Adult Heart Cardiovascular System
33610 33610 SRR30247667 SRX25709109 SRS22350226 SRP526520 PRJNA1148340 RNA Seq analyses of hey2 mutant and wild type sibling zebrafish hearts PRJNA1148340 Other To assess the effects of Hey2 deficiency we performed transcriptome analyses of hey2 mutant and wild type sibling zebrafish hearts at 3 mpf.       RNA Seq for hey25nt / mutantzebrafish hearts at 3 mpf rep2 KO2   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:OE replicate 2|BioSampleModel:Model organism or animal                 RNA Seq for hey25nt / mutant zebrafish hearts at 3 mpf rep2 hey25nt / replicate 2 hey25nt / replicate 2 RNA Seq for hey25nt / mutant zebrafish hearts at 3 mpf replicate 2     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP526520     KO_2_1.fq.gz KO_2_2.fq.gz fastq fastq 6577703400.0 21925678.0 KO 2 1.fq.gz 0:150 1:150 A:1795319867;C:1492750718;G:1485718638;T:1803881133;N:33044 150 150     1795319867 1492750718 1485718638 1803881133 33044 SRX25709109 SRS22350226 SRA1948261 East China Normal University|School of Life Sciences East China Normal University 2 0.94565 0.92404 0.06212 0.06008 0.77281 0.77546 0.55478 0.56589 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2024-08-15 Adult Adult Heart Cardiovascular System
33611 33611 SRR30247668 SRX25709108 SRS22350225 SRP526520 PRJNA1148340 RNA Seq analyses of hey2 mutant and wild type sibling zebrafish hearts PRJNA1148340 Other To assess the effects of Hey2 deficiency we performed transcriptome analyses of hey2 mutant and wild type sibling zebrafish hearts at 3 mpf.       RNA Seq for hey25nt / mutant zebrafish hearts at 3 mpf rep1 KO1   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:OE replicate 1|BioSampleModel:Model organism or animal                 RNA Seq for hey25nt / mutant zebrafish hearts at 3 mpf rep1 hey25nt / replicate 1 hey25nt / replicate 1 RNA Seq for hey25nt / mutant zebrafish hearts at 3 mpf replicate 1     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP526520     KO_1_2.fq.gz KO_1_1.fq.gz fastq fastq 6592159500.0 21973865.0 KO 1 1.fq.gz 0:150 1:150 A:1800707634;C:1491918482;G:1484850929;T:1814648405;N:34050 150 150     1800707634 1491918482 1484850929 1814648405 34050 SRX25709108 SRS22350225 SRA1948261 East China Normal University|School of Life Sciences East China Normal University 2 0.94443 0.92689 0.06601 0.06488 0.76883 0.77033 0.58332 0.52175 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2024-08-15 Adult Adult Heart Cardiovascular System
33612 33612 SRR30247669 SRX25709107 SRS22350224 SRP526520 PRJNA1148340 RNA Seq analyses of hey2 mutant and wild type sibling zebrafish hearts PRJNA1148340 Other To assess the effects of Hey2 deficiency we performed transcriptome analyses of hey2 mutant and wild type sibling zebrafish hearts at 3 mpf.       RNA Seq for hey2+/+ zebrafish hearts at 3 mpf rep3 WT3   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:CTL replicate 3|BioSampleModel:Model organism or animal                 RNA Seq for hey2+/+ zebrafish hearts at 3 mpf rep3 hey2+/+ replicate 3 hey2+/+ replicate 3 RNA Seq for hey2+/+ zebrafish hearts at 3 mpf replicate 3     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP526520     WT_3_1.fq.gz WT_3_2.fq.gz fastq fastq 6582842700.0 21942809.0 WT 3 1.fq.gz 0:150 1:150 A:1796301568;C:1494922823;G:1487154319;T:1804427831;N:36159 150 150     1796301568 1494922823 1487154319 1804427831 36159 SRX25709107 SRS22350224 SRA1948261 East China Normal University|School of Life Sciences East China Normal University 2 0.94446 0.92023 0.06492 0.06289 0.76694 0.7699 0.55651 0.53407 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2024-08-15 Adult Adult Heart Cardiovascular System
33613 33613 SRR30247670 SRX25709106 SRS22350223 SRP526520 PRJNA1148340 RNA Seq analyses of hey2 mutant and wild type sibling zebrafish hearts PRJNA1148340 Other To assess the effects of Hey2 deficiency we performed transcriptome analyses of hey2 mutant and wild type sibling zebrafish hearts at 3 mpf.       RNA Seq for hey2+/+ zebrafish hearts at 3 mpf rep2 WT2   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:CTL replicate 2|BioSampleModel:Model organism or animal                 RNA Seq for hey2+/+ zebrafish hearts at 3 mpf rep2 hey2+/+ replicate 2 hey2+/+ replicate 2 RNA Seq for hey2+/+ zebrafish hearts at 3 mpf replicate 2     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP526520     WT_2_2.fq.gz WT_2_1.fq.gz fastq fastq 6632526000.0 22108420.0 WT 2 1.fq.gz 0:150 1:150 A:1811392253;C:1505075703;G:1495091968;T:1820928778;N:37298 150 150     1811392253 1505075703 1495091968 1820928778 37298 SRX25709106 SRS22350223 SRA1948261 East China Normal University|School of Life Sciences East China Normal University 2 0.94532 0.92096 0.06496 0.06227 0.76564 0.76909 0.56754 0.57117 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2024-08-15 Adult Adult Heart Cardiovascular System
33614 33614 SRR30247671 SRX25709105 SRS22350222 SRP526520 PRJNA1148340 RNA Seq analyses of hey2 mutant and wild type sibling zebrafish hearts PRJNA1148340 Other To assess the effects of Hey2 deficiency we performed transcriptome analyses of hey2 mutant and wild type sibling zebrafish hearts at 3 mpf.       RNA Seq for hey2+/+ zebrafish hearts at 3 mpf rep1 WT1   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:CTL replicate 1|BioSampleModel:Model organism or animal                 RNA Seq for hey2+/+ zebrafish hearts at 3 mpf rep1 hey2+/+ replicate 1 hey2+/+ replicate 1 RNA Seq for hey2+/+ zebrafish hearts at 3 mpf replicate 1     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP526520     WT_1_1.fq.gz WT_1_2.fq.gz fastq fastq 6601461900.0 22004873.0 WT 1 1.fq.gz 0:150 1:150 A:1816453592;C:1485325900;G:1476423985;T:1823223402;N:35021 150 150     1816453592 1485325900 1476423985 1823223402 35021 SRX25709105 SRS22350222 SRA1948261 East China Normal University|School of Life Sciences East China Normal University 2 0.9482 0.92609 0.05744 0.0553 0.77423 0.77699 0.53884 0.54075 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2024-08-15 Adult Adult Heart Cardiovascular System
48054 48054 SRR7008006 SRX3940581 SRS3171382 SRP140462 PRJNA450341 Primary cilia regulate hematopoietic stem and progenitor cell specification through Notch signaling PRJNA450341 Other Hematopoietic stem and progenitor cells HSPCs are capable of producing all mature blood lineages as well as maintaining the self renewal ability throughout life. The hairy like organelle cilia are present in most types of vertebrate cells and play important roles in various biological processes. However it is unclear whether and how cilia regulate HSPC development in vertebrates. Here we show that cilia specific genes involved in primary cilia formation and signaling transduction are required for HSPC development especially at the hemogenic endothelium HE specification step in zebrafish embryos. Blocking primary cilia formation or function by genetic or chemical manipulations impaired HSPC development. Mechanistically we uncover that primary cilia on endothelial cells ECs transduce Notch signal to the earliest HE for proper HSPC specification during embryogenesis. Altogether our findings reveal a pivotal role of endothelial primary cilia in HSPC development and may shed lights into in vitro directed differentiation of HSPCs.     MO26h rep1 MO26h 1 Sample3   strain:zebrafish embryos|isolate:not applicable|dev stage:26 hpf|sex:not applicable|tissue:trunk region|collection date:2017 08 11|geo loc name:China: Beijing|isolation source:not applicable|sample type:fsd1morphants 1|BioSampleModel:Model organism or animal                 RNA seq of fsd1 morphants1 MO26h 1 MO26h 1 RNA was isolated from trunk regions of control embryos and fsd1 morphants for cDNA library. The cDNA library for sequenced using BGISEQ 500 platform.     RNA-Seq TRANSCRIPTOMIC PCR SINGLE BGISEQ BGISEQ-500   SRP140462     MO26h_1_1.fq.gz fastq 1193983450.0 23879669.0 MO26h 1 1.fq.gz 0:50 A:313344068;C:282899939;G:291404437;T:306051122;N:283884 50       313344068 282899939 291404437 306051122 283884 SRX3940581 SRS3171382 SRA690964 Institute of Zoology, CHINESE ACADEMY OF SCIENCES|State Key Laboratory of Membrane Biology Institute of Zoology, CHINESE ACADEMY OF SCIENCES 1 0.95658   0.07921   0.70307   0.47586   50   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2018-04-16 Pharyngula Embryo Trunk Surface Structure
48055 48055 SRR7008007 SRX3940580 SRS3171381 SRP140462 PRJNA450341 Primary cilia regulate hematopoietic stem and progenitor cell specification through Notch signaling PRJNA450341 Other Hematopoietic stem and progenitor cells HSPCs are capable of producing all mature blood lineages as well as maintaining the self renewal ability throughout life. The hairy like organelle cilia are present in most types of vertebrate cells and play important roles in various biological processes. However it is unclear whether and how cilia regulate HSPC development in vertebrates. Here we show that cilia specific genes involved in primary cilia formation and signaling transduction are required for HSPC development especially at the hemogenic endothelium HE specification step in zebrafish embryos. Blocking primary cilia formation or function by genetic or chemical manipulations impaired HSPC development. Mechanistically we uncover that primary cilia on endothelial cells ECs transduce Notch signal to the earliest HE for proper HSPC specification during embryogenesis. Altogether our findings reveal a pivotal role of endothelial primary cilia in HSPC development and may shed lights into in vitro directed differentiation of HSPCs.     MO26h rep2 MO26h 2 Sample4   strain:zebrafish embryos|isolate:not applicable|dev stage:26 hpf|sex:not applicable|tissue:trunk region|collection date:2017 08 11|geo loc name:China: Beijing|isolation source:not applicable|sample type:fsd1morphants 2|BioSampleModel:Model organism or animal                 RNA seq of fsd1 morphants2 MO26h 2 MO26h 2 RNA was isolated from trunk regions of control embryos and fsd1 morphants for cDNA library. The cDNA library for sequenced using BGISEQ 500 platform.     RNA-Seq TRANSCRIPTOMIC PCR SINGLE BGISEQ BGISEQ-500   SRP140462     MO26h_2_1.fq.gz fastq 1199524600.0 23990492.0 MO26h 2 1.fq.gz 0:50 A:318726410;C:282721669;G:287606979;T:310182197;N:287345 50       318726410 282721669 287606979 310182197 287345 SRX3940580 SRS3171381 SRA690964 Institute of Zoology, CHINESE ACADEMY OF SCIENCES|State Key Laboratory of Membrane Biology Institute of Zoology, CHINESE ACADEMY OF SCIENCES 1 0.9541   0.08695   0.70404   0.47195   50   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2018-04-16 Pharyngula Embryo Trunk Surface Structure
48056 48056 SRR7008008 SRX3940579 SRS3171379 SRP140462 PRJNA450341 Primary cilia regulate hematopoietic stem and progenitor cell specification through Notch signaling PRJNA450341 Other Hematopoietic stem and progenitor cells HSPCs are capable of producing all mature blood lineages as well as maintaining the self renewal ability throughout life. The hairy like organelle cilia are present in most types of vertebrate cells and play important roles in various biological processes. However it is unclear whether and how cilia regulate HSPC development in vertebrates. Here we show that cilia specific genes involved in primary cilia formation and signaling transduction are required for HSPC development especially at the hemogenic endothelium HE specification step in zebrafish embryos. Blocking primary cilia formation or function by genetic or chemical manipulations impaired HSPC development. Mechanistically we uncover that primary cilia on endothelial cells ECs transduce Notch signal to the earliest HE for proper HSPC specification during embryogenesis. Altogether our findings reveal a pivotal role of endothelial primary cilia in HSPC development and may shed lights into in vitro directed differentiation of HSPCs.     WT26h rep1 WT26h 1 Sample1   strain:zebrafish embryos|isolate:not applicable|dev stage:26 hpf|sex:not applicable|tissue:trunk region|collection date:2017 08 11|geo loc name:China: Beijing|isolation source:not applicable|sample type:normal embryos 1|BioSampleModel:Model organism or animal                 RNA seq of normal embryos1 WT26h 1 WT26h 1 RNA was isolated from trunk regions of control embryos and fsd1 morphants for cDNA library. The cDNA library for sequenced using BGISEQ 500 platform.     RNA-Seq TRANSCRIPTOMIC PCR SINGLE BGISEQ BGISEQ-500   SRP140462     WT26h_1_1.fq.gz fastq 1200268650.0 24005373.0 WT26h 1 1.fq.gz 0:50 A:315743815;C:284447849;G:295772915;T:303964473;N:339598 50       315743815 284447849 295772915 303964473 339598 SRX3940579 SRS3171379 SRA690964 Institute of Zoology, CHINESE ACADEMY OF SCIENCES|State Key Laboratory of Membrane Biology Institute of Zoology, CHINESE ACADEMY OF SCIENCES 1 0.95659   0.07726   0.70425   0.47269   50   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2018-04-16 Pharyngula Embryo Trunk Surface Structure
48057 48057 SRR7008009 SRX3940578 SRS3171380 SRP140462 PRJNA450341 Primary cilia regulate hematopoietic stem and progenitor cell specification through Notch signaling PRJNA450341 Other Hematopoietic stem and progenitor cells HSPCs are capable of producing all mature blood lineages as well as maintaining the self renewal ability throughout life. The hairy like organelle cilia are present in most types of vertebrate cells and play important roles in various biological processes. However it is unclear whether and how cilia regulate HSPC development in vertebrates. Here we show that cilia specific genes involved in primary cilia formation and signaling transduction are required for HSPC development especially at the hemogenic endothelium HE specification step in zebrafish embryos. Blocking primary cilia formation or function by genetic or chemical manipulations impaired HSPC development. Mechanistically we uncover that primary cilia on endothelial cells ECs transduce Notch signal to the earliest HE for proper HSPC specification during embryogenesis. Altogether our findings reveal a pivotal role of endothelial primary cilia in HSPC development and may shed lights into in vitro directed differentiation of HSPCs.     WT26h rep2 WT26h 2 Sample2   strain:zebrafish embryos|isolate:not applicable|dev stage:26 hpf|sex:not applicable|tissue:trunk region|collection date:2017 08 11|geo loc name:China: Beijing|isolation source:not applicable|sample type:normal embryos 2|BioSampleModel:Model organism or animal                 RNA seq of normal embryos2 WT26h 2 WT26h 2 RNA was isolated from trunk regions of control embryos and fsd1 morphants for cDNA library. The cDNA library for sequenced using BGISEQ 500 platform.     RNA-Seq TRANSCRIPTOMIC PCR SINGLE BGISEQ BGISEQ-500   SRP140462     WT26h_2_1.fq.gz fastq 1199179850.0 23983597.0 WT26h 2 1.fq.gz 0:50 A:316605984;C:281184572;G:292581373;T:308419476;N:388445 50       316605984 281184572 292581373 308419476 388445 SRX3940578 SRS3171380 SRA690964 Institute of Zoology, CHINESE ACADEMY OF SCIENCES|State Key Laboratory of Membrane Biology Institute of Zoology, CHINESE ACADEMY OF SCIENCES 1 0.95377   0.08617   0.70508   0.4775   50   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2018-04-16 Pharyngula Embryo Trunk Surface Structure
68195 68195 SRR17658724 SRX13826757 SRS11705915 SRP355720 PRJNA798511 Comparative analysis of transcriptome for heat induced zebrafish during sex differentiation PRJNA798511 Other heat treated zebrafish         C25d ZHT   strain:AB|isolate:28|breed:zebrafish|cultivar:WT|ecotype:CHINA|age:25dpf|sex:not collected|tissue:whole organism|BioSampleModel:Model organism or animal                 RNAq of zebrafish C25D C25D WT zebrafish     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP355720   loader:fastq load.py     20541691800.0 68472306.0 C25D.7z 0:150 1:150 A:5668751376;C:4596699177;G:4545478495;T:5730382931;N:379821 150 150     5668751376 4596699177 4545478495 5730382931 379821 SRX13826757 SRS11705915 SRA1358616 Hunan University of Science and Technology|School of Life and Health Sciences Hunan University of Science and Technology 2 0.84223 0.84372 0.07155 0.07222 0.70189 0.70321 0.47909 0.495 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2022-12-07 Larval Larval Whole Organism All anatomical structures
68196 68196 SRR17658725 SRX13826756 SRS11705914 SRP355720 PRJNA798511 Comparative analysis of transcriptome for heat induced zebrafish during sex differentiation PRJNA798511 Other heat treated zebrafish         T60d ZHT   strain:AB|isolate:35|breed:zebrafish|cultivar:TEST|ecotype:CHINA|age:60dpf|sex:not collected|tissue:whole organism|BioSampleModel:Model organism or animal                 RNAq of zebrafish T60D T60D heat treated zebrafish     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP355720   loader:fastq load.py     20334742200.0 67782474.0 T60D.7z 0:150 1:150 A:5482201207;C:4682998764;G:4635775004;T:5533378494;N:388731 150 150     5482201207 4682998764 4635775004 5533378494 388731 SRX13826756 SRS11705914 SRA1358616 Hunan University of Science and Technology|School of Life and Health Sciences Hunan University of Science and Technology 2 0.94378 0.94515 0.04989 0.04997 0.69848 0.69978 0.50317 0.5041 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2022-12-09 Juvenile Juvenile Whole Organism All anatomical structures
68197 68197 SRR17658726 SRX13826755 SRS11705913 SRP355720 PRJNA798511 Comparative analysis of transcriptome for heat induced zebrafish during sex differentiation PRJNA798511 Other heat treated zebrafish         T45d ZHT   strain:AB|isolate:35|breed:zebrafish|cultivar:TEST|ecotype:CHINA|age:45dpf|sex:not collected|tissue:whole organism|BioSampleModel:Model organism or animal                 RNAq of zebrafish T45D T45D heat treated zebrafish     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP355720   loader:fastq load.py     20230560300.0 67435201.0 T45D.7z 0:150 1:150 A:5444816209;C:4663007584;G:4631943733;T:5490408754;N:384020 150 150     5444816209 4663007584 4631943733 5490408754 384020 SRX13826755 SRS11705913 SRA1358616 Hunan University of Science and Technology|School of Life and Health Sciences Hunan University of Science and Technology 2 0.88041 0.881 0.04485 0.04492 0.72163 0.72236 0.52232 0.52307 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2022-12-09 Juvenile Juvenile Whole Organism All anatomical structures
68198 68198 SRR17658727 SRX13826754 SRS11705912 SRP355720 PRJNA798511 Comparative analysis of transcriptome for heat induced zebrafish during sex differentiation PRJNA798511 Other heat treated zebrafish         T35d ZHT   strain:AB|isolate:35|breed:zebrafish|cultivar:TEST|ecotype:CHINA|age:35dpf|sex:not collected|tissue:whole organism|BioSampleModel:Model organism or animal                 RNAq of zebrafish T35D T35D heat treated zebrafish     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP355720   loader:fastq load.py     20630503200.0 68768344.0 T35D.7z 0:150 1:150 A:5660657832;C:4654929757;G:4598083304;T:5716350276;N:482031 150 150     5660657832 4654929757 4598083304 5716350276 482031 SRX13826754 SRS11705912 SRA1358616 Hunan University of Science and Technology|School of Life and Health Sciences Hunan University of Science and Technology 2 0.9134 0.91476 0.06961 0.06972 0.69035 0.69215 0.52155 0.5154 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2022-12-09 Juvenile Juvenile Whole Organism All anatomical structures
68199 68199 SRR17658728 SRX13826753 SRS11705911 SRP355720 PRJNA798511 Comparative analysis of transcriptome for heat induced zebrafish during sex differentiation PRJNA798511 Other heat treated zebrafish         C60d ZHT   strain:AB|isolate:28|breed:zebrafish|cultivar:WT|ecotype:CHINA|age:60dpf|sex:not collected|tissue:whole organism|BioSampleModel:Model organism or animal                 RNAq of zebrafish C60D C60D WT zebrafish     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP355720   loader:fastq load.py     10921407600.0 44923977.0 C60D.7z   A:2992232295;C:2470688717;G:2440861228;T:3017432565;N:192795         2992232295 2470688717 2440861228 3017432565 192795 SRX13826753 SRS11705911 SRA1358616 Hunan University of Science and Technology|School of Life and Health Sciences Hunan University of Science and Technology 2 0.93932 0.94095 0.06489 0.06559 0.77871 0.77759 0.56384 0.56447 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2022-12-09 Juvenile Juvenile Whole Organism All anatomical structures
68200 68200 SRR17658729 SRX13826752 SRS11705910 SRP355720 PRJNA798511 Comparative analysis of transcriptome for heat induced zebrafish during sex differentiation PRJNA798511 Other heat treated zebrafish         C45d ZHT   strain:AB|isolate:28|breed:zebrafish|cultivar:WT|ecotype:CHINA|age:45dpf|sex:not collected|tissue:whole organism|BioSampleModel:Model organism or animal                 RNAq of zebrafish C45D C45D WT zebrafish     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP355720   loader:fastq load.py     20413229700.0 68044099.0 C45D.7z 0:150 1:150 A:5619395833;C:4581611789;G:4543973618;T:5667873613;N:374847 150 150     5619395833 4581611789 4543973618 5667873613 374847 SRX13826752 SRS11705910 SRA1358616 Hunan University of Science and Technology|School of Life and Health Sciences Hunan University of Science and Technology 2 0.86848 0.87064 0.0719 0.07252 0.69879 0.69834 0.52279 0.51074 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2022-12-09 Juvenile Juvenile Whole Organism All anatomical structures
68201 68201 SRR17658730 SRX13826751 SRS11705909 SRP355720 PRJNA798511 Comparative analysis of transcriptome for heat induced zebrafish during sex differentiation PRJNA798511 Other heat treated zebrafish         C35d ZHT   strain:AB|isolate:28|breed:zebrafish|cultivar:WT|ecotype:CHINA|age:35dpf|sex:not collected|tissue:whole organism|BioSampleModel:Model organism or animal                 RNAq of zebrafish C35D C35D WT zebrafish     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP355720   loader:fastq load.py     20469803700.0 68232679.0 C35D.7z 0:150 1:150 A:5556774511;C:4678377106;G:4627472920;T:5606765895;N:413268 150 150     5556774511 4678377106 4627472920 5606765895 413268 SRX13826751 SRS11705909 SRA1358616 Hunan University of Science and Technology|School of Life and Health Sciences Hunan University of Science and Technology 2 0.93663 0.93871 0.06853 0.06895 0.6982 0.69901 0.51209 0.51148 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2022-12-09 Juvenile Juvenile Whole Organism All anatomical structures
70178 70178 SRR19568478 SRX15620532 SRS13321067 SRP378839 PRJNA846550 The mechanism of AHR mediated disturbance of lipid metabolism in dioxin induced cardiac development injury in zebrafish PRJNA846550 Other Dioxin like environmental pollutants are chemical substances with persistent ability to cause environmental damage which have a vital impact on the growth and development of human and other organisms. Previous studies have confirmed that dioxin like environmental pollutants are cardiotoxic but the molecular mechanism is still unclear.         TCDD 4   strain:AB|age:5 dpf|dev stage:5 dpf|sex:not determined|tissue:heart|id:8|BioSampleModel:Model organism or animal                 RNA seq of zebrafish Danio rerio: larval heart of TCDD treatment TCDD 4 TCDD 4 RNA seq of zebrafish Danio rerio: replicate 4 of TCDD treatment     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP378839     TCDD_4_1.fq.gz TCDD_4_2.fq.gz fastq fastq 6664935600.0 44432904.0 TCDD 4 1.fq.gz 0:150 1:150 A:1778771695;C:1547959320;G:1547444025;T:1790760560;N:0 150 150     1778771695 1547959320 1547444025 1790760560 0 SRX15620532 SRS13321067 SRA1432977 Shandong University|School of basic medical sciences Shandong University 1 0.93639   0.07898   0.67649   0.51984   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2022-06-07 Larval Larval Heart Cardiovascular System
70179 70179 SRR19568479 SRX15620531 SRS13321066 SRP378839 PRJNA846550 The mechanism of AHR mediated disturbance of lipid metabolism in dioxin induced cardiac development injury in zebrafish PRJNA846550 Other Dioxin like environmental pollutants are chemical substances with persistent ability to cause environmental damage which have a vital impact on the growth and development of human and other organisms. Previous studies have confirmed that dioxin like environmental pollutants are cardiotoxic but the molecular mechanism is still unclear.         TCDD 3   strain:AB|age:5 dpf|dev stage:5 dpf|sex:not determined|tissue:heart|id:7|BioSampleModel:Model organism or animal                 RNA seq of zebrafish Danio rerio: larval heart of TCDD treatment TCDD 3 TCDD 3 RNA seq of zebrafish Danio rerio: replicate 3 of TCDD treatment     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP378839     TCDD_3_1.fq.gz TCDD_3_2.fq.gz fastq fastq 6763596300.0 45090642.0 TCDD 3 1.fq.gz 0:150 1:150 A:1802620229;C:1572061293;G:1575663838;T:1813250940;N:0 150 150     1802620229 1572061293 1575663838 1813250940 0 SRX15620531 SRS13321066 SRA1432977 Shandong University|School of basic medical sciences Shandong University 1 0.93871   0.07491   0.67754   0.51592   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2022-06-07 Larval Larval Heart Cardiovascular System
70180 70180 SRR19568480 SRX15620530 SRS13321065 SRP378839 PRJNA846550 The mechanism of AHR mediated disturbance of lipid metabolism in dioxin induced cardiac development injury in zebrafish PRJNA846550 Other Dioxin like environmental pollutants are chemical substances with persistent ability to cause environmental damage which have a vital impact on the growth and development of human and other organisms. Previous studies have confirmed that dioxin like environmental pollutants are cardiotoxic but the molecular mechanism is still unclear.         TCDD 2   strain:AB|age:5 dpf|dev stage:5 dpf|sex:not determined|tissue:heart|id:6|BioSampleModel:Model organism or animal                 RNA seq of zebrafish Danio rerio: larval heart of TCDD treatment TCDD 2 TCDD 2 RNA seq of zebrafish Danio rerio: replicate 2 of TCDD treatment     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP378839     TCDD_2_1.fq.gz TCDD_2_2.fq.gz fastq fastq 6628062600.0 44187084.0 TCDD 2 1.fq.gz 0:150 1:150 A:1772545581;C:1536779192;G:1535280305;T:1783457522;N:0 150 150     1772545581 1536779192 1535280305 1783457522 0 SRX15620530 SRS13321065 SRA1432977 Shandong University|School of basic medical sciences Shandong University 1 0.93556   0.07257   0.68067   0.51787   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2022-06-07 Larval Larval Heart Cardiovascular System
70181 70181 SRR19568481 SRX15620529 SRS13321064 SRP378839 PRJNA846550 The mechanism of AHR mediated disturbance of lipid metabolism in dioxin induced cardiac development injury in zebrafish PRJNA846550 Other Dioxin like environmental pollutants are chemical substances with persistent ability to cause environmental damage which have a vital impact on the growth and development of human and other organisms. Previous studies have confirmed that dioxin like environmental pollutants are cardiotoxic but the molecular mechanism is still unclear.         TCDD 1   strain:AB|age:5 dpf|dev stage:5 dpf|sex:not determined|tissue:heart|id:5|BioSampleModel:Model organism or animal                 RNA seq of zebrafish Danio rerio: larval heart of TCDD treatment TCDD 1 TCDD 1 RNA seq of zebrafish Danio rerio: replicate 1 of TCDD treatment     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP378839     TCDD_1_1.fq.gz TCDD_1_2.fq.gz fastq fastq 6661439100.0 44409594.0 TCDD 1 1.fq.gz 0:150 1:150 A:1776797062;C:1548148693;G:1547340992;T:1789152353;N:0 150 150     1776797062 1548148693 1547340992 1789152353 0 SRX15620529 SRS13321064 SRA1432977 Shandong University|School of basic medical sciences Shandong University 1 0.93716   0.07287   0.67487   0.50549   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2022-06-07 Larval Larval Heart Cardiovascular System
70182 70182 SRR19568482 SRX15620528 SRS13321062 SRP378839 PRJNA846550 The mechanism of AHR mediated disturbance of lipid metabolism in dioxin induced cardiac development injury in zebrafish PRJNA846550 Other Dioxin like environmental pollutants are chemical substances with persistent ability to cause environmental damage which have a vital impact on the growth and development of human and other organisms. Previous studies have confirmed that dioxin like environmental pollutants are cardiotoxic but the molecular mechanism is still unclear.         Ctrl 4   strain:AB|age:5 dpf|dev stage:5 dpf|sex:not determined|tissue:heart|id:4|BioSampleModel:Model organism or animal                 RNA seq of zebrafish Danio rerio: larval heart of control Ctrl 4 Ctrl 4 RNA seq of zebrafish Danio rerio: replicate 4 of control     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP378839     Ctrl_4_1.fq.gz Ctrl_4_2.fq.gz fastq fastq 6737187300.0 44914582.0 Ctrl 4 1.fq.gz 0:150 1:150 A:1792212366;C:1570555803;G:1570692729;T:1803726402;N:0 150 150     1792212366 1570555803 1570692729 1803726402 0 SRX15620528 SRS13321062 SRA1432977 Shandong University|School of basic medical sciences Shandong University 1 0.94104   0.07451   0.67821   0.51308   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2022-06-07 Larval Larval Heart Cardiovascular System
70183 70183 SRR19568483 SRX15620527 SRS13321063 SRP378839 PRJNA846550 The mechanism of AHR mediated disturbance of lipid metabolism in dioxin induced cardiac development injury in zebrafish PRJNA846550 Other Dioxin like environmental pollutants are chemical substances with persistent ability to cause environmental damage which have a vital impact on the growth and development of human and other organisms. Previous studies have confirmed that dioxin like environmental pollutants are cardiotoxic but the molecular mechanism is still unclear.         Ctrl 3   strain:AB|age:5 dpf|dev stage:5 dpf|sex:not determined|tissue:heart|id:3|BioSampleModel:Model organism or animal                 RNA seq of zebrafish Danio rerio: larval heart of control Ctrl 3 Ctrl 3 RNA seq of zebrafish Danio rerio: replicate 3 of control     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP378839     Ctrl_3_1.fq.gz Ctrl_3_2.fq.gz fastq fastq 6731291400.0 44875276.0 Ctrl 3 1.fq.gz 0:150 1:150 A:1790044747;C:1568544653;G:1569058962;T:1803643038;N:0 150 150     1790044747 1568544653 1569058962 1803643038 0 SRX15620527 SRS13321063 SRA1432977 Shandong University|School of basic medical sciences Shandong University 1 0.94057   0.06779   0.68162   0.51945   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2022-06-07 Larval Larval Heart Cardiovascular System
70184 70184 SRR19568484 SRX15620526 SRS13321060 SRP378839 PRJNA846550 The mechanism of AHR mediated disturbance of lipid metabolism in dioxin induced cardiac development injury in zebrafish PRJNA846550 Other Dioxin like environmental pollutants are chemical substances with persistent ability to cause environmental damage which have a vital impact on the growth and development of human and other organisms. Previous studies have confirmed that dioxin like environmental pollutants are cardiotoxic but the molecular mechanism is still unclear.         Ctrl 2   strain:AB|age:5 dpf|dev stage:5 dpf|sex:not determined|tissue:heart|id:2|BioSampleModel:Model organism or animal                 RNA seq of zebrafish Danio rerio: larval heart of control Ctrl 2 Ctrl 2 RNA seq of zebrafish Danio rerio: replicate 2 of control     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP378839     Ctrl_2_1.fq.gz Ctrl_2_2.fq.gz fastq fastq 6698026800.0 44653512.0 Ctrl 2 1.fq.gz 0:150 1:150 A:1795059523;C:1549817920;G:1547008645;T:1806140712;N:0 150 150     1795059523 1549817920 1547008645 1806140712 0 SRX15620526 SRS13321060 SRA1432977 Shandong University|School of basic medical sciences Shandong University 1 0.93483   0.07839   0.67491   0.52108   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2022-06-07 Larval Larval Heart Cardiovascular System
70185 70185 SRR19568485 SRX15620525 SRS13321061 SRP378839 PRJNA846550 The mechanism of AHR mediated disturbance of lipid metabolism in dioxin induced cardiac development injury in zebrafish PRJNA846550 Other Dioxin like environmental pollutants are chemical substances with persistent ability to cause environmental damage which have a vital impact on the growth and development of human and other organisms. Previous studies have confirmed that dioxin like environmental pollutants are cardiotoxic but the molecular mechanism is still unclear.         Ctrl 1   strain:AB|age:5 dpf|dev stage:5 dpf|sex:not determined|tissue:heart|id:1|BioSampleModel:Model organism or animal                 RNA seq of zebrafish Danio rerio: larval heart of control Ctrl 1 Ctrl 1 RNA seq of zebrafish Danio rerio: replicate 1 of control     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP378839     Ctrl_1_1.fq.gz Ctrl_1_2.fq.gz fastq fastq 6735053100.0 44900354.0 Ctrl 1 1.fq.gz 0:150 1:150 A:1769863183;C:1592773959;G:1591379310;T:1781036648;N:0 150 150     1769863183 1592773959 1591379310 1781036648 0 SRX15620525 SRS13321061 SRA1432977 Shandong University|School of basic medical sciences Shandong University 1 0.94397   0.05544   0.69749   0.51432   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2022-06-07 Larval Larval Heart Cardiovascular System
74701 74701 SRR24003726 SRX19807142 SRS17168877 SRP429947 PRJNA949785 Sequencing of zebrafish bone tissues PRJNA949785 Other Transcriptomics was used to investigate sensitive genes associated with exercise improved bone mass         eight month zebrafish bone tissues   breed:Not applicable|age:8 month|sex:male|tissue:b1|BioSampleModel:Model organism or animal                 RNA Seq of b1 tissue in zebrafish case2 4 case2 4 Qualified total RNA was purified by DNase I and mRNA was enriched by adding OligodT attached magnetic beads. Subsequently fragment buffer was added to cleave the mRNA into small fragments. Fragmented mRNA was used as a template for reverse transcription to generate the first cDNA strand and then the second cDNA strand was generated. End repair and adaptor ligation were performed by adding A tailing Mix and RNA Index Adapters and then PCR amplification was performed. Single strand circle DNA library was obtained by recovering and cycling the PCR products. The final library was obtained by purifying the linear DNA molecules that were not cycled. The quality of the final library was tested. The qualified library was replicated by rolling circle replication to form DNA nanospheres DNBs. DNBs were added to the mesh holes of a nanochip using high density DNA nanochip technology. Subsequently sequencing was performed on the BGIISEQ500 platform BGI Shenzhen Guangdong China using combined probe anchored polymerisation.     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP429947     case2_4_1.fq.gz case2_4_2.fq.gz fastq fastq 6631325400.0 22104418.0 case2 4 1.fq.gz 0:150 1:150 A:1790451511;C:1523987494;G:1517049214;T:1799837181;N:0 150 150     1790451511 1523987494 1517049214 1799837181 0 SRX19807142 SRS17168877 SRA1612461 Sun Yat-sen University|Department of Epidemiology, School of Public Healt Sun Yat-sen University 2 0.94202 0.94054 0.06448 0.06393 0.71415 0.71445 0.52801 0.52947 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2023-03-29 Adult Adult Bone or Cartilage Skeletal Element
74702 74702 SRR24003727 SRX19807141 SRS17168877 SRP429947 PRJNA949785 Sequencing of zebrafish bone tissues PRJNA949785 Other Transcriptomics was used to investigate sensitive genes associated with exercise improved bone mass         eight month zebrafish bone tissues   breed:Not applicable|age:8 month|sex:male|tissue:b1|BioSampleModel:Model organism or animal                 RNA Seq of b1 tissue in zebrafish case2 3 case2 3 Qualified total RNA was purified by DNase I and mRNA was enriched by adding OligodT attached magnetic beads. Subsequently fragment buffer was added to cleave the mRNA into small fragments. Fragmented mRNA was used as a template for reverse transcription to generate the first cDNA strand and then the second cDNA strand was generated. End repair and adaptor ligation were performed by adding A tailing Mix and RNA Index Adapters and then PCR amplification was performed. Single strand circle DNA library was obtained by recovering and cycling the PCR products. The final library was obtained by purifying the linear DNA molecules that were not cycled. The quality of the final library was tested. The qualified library was replicated by rolling circle replication to form DNA nanospheres DNBs. DNBs were added to the mesh holes of a nanochip using high density DNA nanochip technology. Subsequently sequencing was performed on the BGIISEQ500 platform BGI Shenzhen Guangdong China using combined probe anchored polymerisation.     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP429947     case2_3_1.fq.gz case2_3_2.fq.gz fastq fastq 6706743300.0 22355811.0 case2 3 1.fq.gz 0:150 1:150 A:1845685627;C:1507725453;G:1499541624;T:1853790596;N:0 150 150     1845685627 1507725453 1499541624 1853790596 0 SRX19807141 SRS17168877 SRA1612461 Sun Yat-sen University|Department of Epidemiology, School of Public Healt Sun Yat-sen University 2 0.94268 0.93594 0.08009 0.07937 0.70402 0.70441 0.4556 0.48818 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2023-03-29 Adult Adult Bone or Cartilage Skeletal Element
74703 74703 SRR24003728 SRX19807140 SRS17168877 SRP429947 PRJNA949785 Sequencing of zebrafish bone tissues PRJNA949785 Other Transcriptomics was used to investigate sensitive genes associated with exercise improved bone mass         eight month zebrafish bone tissues   breed:Not applicable|age:8 month|sex:male|tissue:b1|BioSampleModel:Model organism or animal                 RNA Seq of b1 tissue in zebrafish case2 2 case2 2 Qualified total RNA was purified by DNase I and mRNA was enriched by adding OligodT attached magnetic beads. Subsequently fragment buffer was added to cleave the mRNA into small fragments. Fragmented mRNA was used as a template for reverse transcription to generate the first cDNA strand and then the second cDNA strand was generated. End repair and adaptor ligation were performed by adding A tailing Mix and RNA Index Adapters and then PCR amplification was performed. Single strand circle DNA library was obtained by recovering and cycling the PCR products. The final library was obtained by purifying the linear DNA molecules that were not cycled. The quality of the final library was tested. The qualified library was replicated by rolling circle replication to form DNA nanospheres DNBs. DNBs were added to the mesh holes of a nanochip using high density DNA nanochip technology. Subsequently sequencing was performed on the BGIISEQ500 platform BGI Shenzhen Guangdong China using combined probe anchored polymerisation.     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP429947     case2_2_1.fq.gz case2_2_2.fq.gz fastq fastq 6677092200.0 22256974.0 case2 2 1.fq.gz 0:150 1:150 A:1864795230;C:1474224567;G:1465199644;T:1872872759;N:0 150 150     1864795230 1474224567 1465199644 1872872759 0 SRX19807140 SRS17168877 SRA1612461 Sun Yat-sen University|Department of Epidemiology, School of Public Healt Sun Yat-sen University 2 0.93359 0.92743 0.0959 0.09583 0.69089 0.69234 0.48419 0.48121 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2023-03-29 Adult Adult Bone or Cartilage Skeletal Element
74704 74704 SRR24003729 SRX19807139 SRS17168877 SRP429947 PRJNA949785 Sequencing of zebrafish bone tissues PRJNA949785 Other Transcriptomics was used to investigate sensitive genes associated with exercise improved bone mass         eight month zebrafish bone tissues   breed:Not applicable|age:8 month|sex:male|tissue:b1|BioSampleModel:Model organism or animal                 RNA Seq of b1 tissue in zebrafish case2 1 case2 1 Qualified total RNA was purified by DNase I and mRNA was enriched by adding OligodT attached magnetic beads. Subsequently fragment buffer was added to cleave the mRNA into small fragments. Fragmented mRNA was used as a template for reverse transcription to generate the first cDNA strand and then the second cDNA strand was generated. End repair and adaptor ligation were performed by adding A tailing Mix and RNA Index Adapters and then PCR amplification was performed. Single strand circle DNA library was obtained by recovering and cycling the PCR products. The final library was obtained by purifying the linear DNA molecules that were not cycled. The quality of the final library was tested. The qualified library was replicated by rolling circle replication to form DNA nanospheres DNBs. DNBs were added to the mesh holes of a nanochip using high density DNA nanochip technology. Subsequently sequencing was performed on the BGIISEQ500 platform BGI Shenzhen Guangdong China using combined probe anchored polymerisation.     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP429947     case2_1_1.fq.gz case2_1_2.fq.gz fastq fastq 6644478600.0 22148262.0 case2 1 1.fq.gz 0:150 1:150 A:1863814645;C:1460246773;G:1453279946;T:1867137236;N:0 150 150     1863814645 1460246773 1453279946 1867137236 0 SRX19807139 SRS17168877 SRA1612461 Sun Yat-sen University|Department of Epidemiology, School of Public Healt Sun Yat-sen University 2 0.93932 0.9379 0.09722 0.09709 0.71985 0.71873 0.49646 0.5522 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2023-03-29 Adult Adult Bone or Cartilage Skeletal Element
74705 74705 SRR24003730 SRX19807138 SRS17168877 SRP429947 PRJNA949785 Sequencing of zebrafish bone tissues PRJNA949785 Other Transcriptomics was used to investigate sensitive genes associated with exercise improved bone mass         eight month zebrafish bone tissues   breed:Not applicable|age:8 month|sex:male|tissue:b1|BioSampleModel:Model organism or animal                 RNA Seq of b1 tissue in zebrafish control2 6 control2 6 Qualified total RNA was purified by DNase I and mRNA was enriched by adding OligodT attached magnetic beads. Subsequently fragment buffer was added to cleave the mRNA into small fragments. Fragmented mRNA was used as a template for reverse transcription to generate the first cDNA strand and then the second cDNA strand was generated. End repair and adaptor ligation were performed by adding A tailing Mix and RNA Index Adapters and then PCR amplification was performed. Single strand circle DNA library was obtained by recovering and cycling the PCR products. The final library was obtained by purifying the linear DNA molecules that were not cycled. The quality of the final library was tested. The qualified library was replicated by rolling circle replication to form DNA nanospheres DNBs. DNBs were added to the mesh holes of a nanochip using high density DNA nanochip technology. Subsequently sequencing was performed on the BGIISEQ500 platform BGI Shenzhen Guangdong China using combined probe anchored polymerisation.     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP429947     control2_6_1.fq.gz control2_6_2.fq.gz fastq fastq 6817849200.0 22726164.0 control2 6 1.fq.gz 0:150 1:150 A:1916198776;C:1480570561;G:1501234091;T:1919845772;N:0 150 150     1916198776 1480570561 1501234091 1919845772 0 SRX19807138 SRS17168877 SRA1612461 Sun Yat-sen University|Department of Epidemiology, School of Public Healt Sun Yat-sen University 2 0.94697 0.9369 0.06934 0.06812 0.76824 0.77114 0.49005 0.54882 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2023-03-29 Adult Adult Bone or Cartilage Skeletal Element
74706 74706 SRR24003731 SRX19807137 SRS17168877 SRP429947 PRJNA949785 Sequencing of zebrafish bone tissues PRJNA949785 Other Transcriptomics was used to investigate sensitive genes associated with exercise improved bone mass         eight month zebrafish bone tissues   breed:Not applicable|age:8 month|sex:male|tissue:b1|BioSampleModel:Model organism or animal                 RNA Seq of b1 tissue in zebrafish control2 5 control2 5 Qualified total RNA was purified by DNase I and mRNA was enriched by adding OligodT attached magnetic beads. Subsequently fragment buffer was added to cleave the mRNA into small fragments. Fragmented mRNA was used as a template for reverse transcription to generate the first cDNA strand and then the second cDNA strand was generated. End repair and adaptor ligation were performed by adding A tailing Mix and RNA Index Adapters and then PCR amplification was performed. Single strand circle DNA library was obtained by recovering and cycling the PCR products. The final library was obtained by purifying the linear DNA molecules that were not cycled. The quality of the final library was tested. The qualified library was replicated by rolling circle replication to form DNA nanospheres DNBs. DNBs were added to the mesh holes of a nanochip using high density DNA nanochip technology. Subsequently sequencing was performed on the BGIISEQ500 platform BGI Shenzhen Guangdong China using combined probe anchored polymerisation.     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP429947     control2_5_1.fq.gz control2_5_2.fq.gz fastq fastq 6730171500.0 22433905.0 control2 5 1.fq.gz 0:150 1:150 A:1881763818;C:1469481635;G:1493477302;T:1885448745;N:0 150 150     1881763818 1469481635 1493477302 1885448745 0 SRX19807137 SRS17168877 SRA1612461 Sun Yat-sen University|Department of Epidemiology, School of Public Healt Sun Yat-sen University 2 0.9399 0.92905 0.0832 0.08122 0.70993 0.71228 0.54991 0.58952 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2023-03-29 Adult Adult Bone or Cartilage Skeletal Element
74707 74707 SRR24003732 SRX19807136 SRS17168877 SRP429947 PRJNA949785 Sequencing of zebrafish bone tissues PRJNA949785 Other Transcriptomics was used to investigate sensitive genes associated with exercise improved bone mass         eight month zebrafish bone tissues   breed:Not applicable|age:8 month|sex:male|tissue:b1|BioSampleModel:Model organism or animal                 RNA Seq of b1 tissue in zebrafish control2 4 control2 4 Qualified total RNA was purified by DNase I and mRNA was enriched by adding OligodT attached magnetic beads. Subsequently fragment buffer was added to cleave the mRNA into small fragments. Fragmented mRNA was used as a template for reverse transcription to generate the first cDNA strand and then the second cDNA strand was generated. End repair and adaptor ligation were performed by adding A tailing Mix and RNA Index Adapters and then PCR amplification was performed. Single strand circle DNA library was obtained by recovering and cycling the PCR products. The final library was obtained by purifying the linear DNA molecules that were not cycled. The quality of the final library was tested. The qualified library was replicated by rolling circle replication to form DNA nanospheres DNBs. DNBs were added to the mesh holes of a nanochip using high density DNA nanochip technology. Subsequently sequencing was performed on the BGIISEQ500 platform BGI Shenzhen Guangdong China using combined probe anchored polymerisation.     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP429947     control2_4_1.fq.gz control2_4_2.fq.gz fastq fastq 6660686100.0 22202287.0 control2 4 1.fq.gz 0:150 1:150 A:1846205332;C:1486328129;G:1477889862;T:1850262777;N:0 150 150     1846205332 1486328129 1477889862 1850262777 0 SRX19807136 SRS17168877 SRA1612461 Sun Yat-sen University|Department of Epidemiology, School of Public Healt Sun Yat-sen University 2 0.94251 0.94001 0.08206 0.082 0.69483 0.69524 0.49193 0.49602 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2023-03-29 Adult Adult Bone or Cartilage Skeletal Element
74708 74708 SRR24003733 SRX19807135 SRS17168877 SRP429947 PRJNA949785 Sequencing of zebrafish bone tissues PRJNA949785 Other Transcriptomics was used to investigate sensitive genes associated with exercise improved bone mass         eight month zebrafish bone tissues   breed:Not applicable|age:8 month|sex:male|tissue:b1|BioSampleModel:Model organism or animal                 RNA Seq of b1 tissue in zebrafish control2 3 control2 3 Qualified total RNA was purified by DNase I and mRNA was enriched by adding OligodT attached magnetic beads. Subsequently fragment buffer was added to cleave the mRNA into small fragments. Fragmented mRNA was used as a template for reverse transcription to generate the first cDNA strand and then the second cDNA strand was generated. End repair and adaptor ligation were performed by adding A tailing Mix and RNA Index Adapters and then PCR amplification was performed. Single strand circle DNA library was obtained by recovering and cycling the PCR products. The final library was obtained by purifying the linear DNA molecules that were not cycled. The quality of the final library was tested. The qualified library was replicated by rolling circle replication to form DNA nanospheres DNBs. DNBs were added to the mesh holes of a nanochip using high density DNA nanochip technology. Subsequently sequencing was performed on the BGIISEQ500 platform BGI Shenzhen Guangdong China using combined probe anchored polymerisation.     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP429947     control2_3_1.fq.gz control2_3_2.fq.gz fastq fastq 6683569500.0 22278565.0 control2 3 1.fq.gz 0:150 1:150 A:1846755716;C:1494194697;G:1482717957;T:1859901130;N:0 150 150     1846755716 1494194697 1482717957 1859901130 0 SRX19807135 SRS17168877 SRA1612461 Sun Yat-sen University|Department of Epidemiology, School of Public Healt Sun Yat-sen University 2 0.93255 0.93106 0.10717 0.10731 0.67665 0.67791 0.54876 0.52297 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2023-03-29 Adult Adult Bone or Cartilage Skeletal Element
74709 74709 SRR24003734 SRX19807134 SRS17168877 SRP429947 PRJNA949785 Sequencing of zebrafish bone tissues PRJNA949785 Other Transcriptomics was used to investigate sensitive genes associated with exercise improved bone mass         eight month zebrafish bone tissues   breed:Not applicable|age:8 month|sex:male|tissue:b1|BioSampleModel:Model organism or animal                 RNA Seq of b1 tissue in zebrafish case2 7 case2 7 Qualified total RNA was purified by DNase I and mRNA was enriched by adding OligodT attached magnetic beads. Subsequently fragment buffer was added to cleave the mRNA into small fragments. Fragmented mRNA was used as a template for reverse transcription to generate the first cDNA strand and then the second cDNA strand was generated. End repair and adaptor ligation were performed by adding A tailing Mix and RNA Index Adapters and then PCR amplification was performed. Single strand circle DNA library was obtained by recovering and cycling the PCR products. The final library was obtained by purifying the linear DNA molecules that were not cycled. The quality of the final library was tested. The qualified library was replicated by rolling circle replication to form DNA nanospheres DNBs. DNBs were added to the mesh holes of a nanochip using high density DNA nanochip technology. Subsequently sequencing was performed on the BGIISEQ500 platform BGI Shenzhen Guangdong China using combined probe anchored polymerisation.     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP429947     case2_7_1.fq.gz case2_7_2.fq.gz fastq fastq 6770748000.0 22569160.0 case2 7 1.fq.gz 0:150 1:150 A:1918448687;C:1455131518;G:1474277741;T:1922890054;N:0 150 150     1918448687 1455131518 1474277741 1922890054 0 SRX19807134 SRS17168877 SRA1612461 Sun Yat-sen University|Department of Epidemiology, School of Public Healt Sun Yat-sen University 2 0.94025 0.92953 0.08709 0.0851 0.73864 0.73914 0.5716 0.56037 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2023-03-29 Adult Adult Bone or Cartilage Skeletal Element
74710 74710 SRR24003735 SRX19807133 SRS17168877 SRP429947 PRJNA949785 Sequencing of zebrafish bone tissues PRJNA949785 Other Transcriptomics was used to investigate sensitive genes associated with exercise improved bone mass         eight month zebrafish bone tissues   breed:Not applicable|age:8 month|sex:male|tissue:b1|BioSampleModel:Model organism or animal                 RNA Seq of b1 tissue in zebrafish case2 6 case2 6 Qualified total RNA was purified by DNase I and mRNA was enriched by adding OligodT attached magnetic beads. Subsequently fragment buffer was added to cleave the mRNA into small fragments. Fragmented mRNA was used as a template for reverse transcription to generate the first cDNA strand and then the second cDNA strand was generated. End repair and adaptor ligation were performed by adding A tailing Mix and RNA Index Adapters and then PCR amplification was performed. Single strand circle DNA library was obtained by recovering and cycling the PCR products. The final library was obtained by purifying the linear DNA molecules that were not cycled. The quality of the final library was tested. The qualified library was replicated by rolling circle replication to form DNA nanospheres DNBs. DNBs were added to the mesh holes of a nanochip using high density DNA nanochip technology. Subsequently sequencing was performed on the BGIISEQ500 platform BGI Shenzhen Guangdong China using combined probe anchored polymerisation.     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP429947     case2_6_1.fq.gz case2_6_2.fq.gz fastq fastq 6743372700.0 22477909.0 case2 6 1.fq.gz 0:150 1:150 A:1825699499;C:1533637372;G:1552424547;T:1831611282;N:0 150 150     1825699499 1533637372 1552424547 1831611282 0 SRX19807133 SRS17168877 SRA1612461 Sun Yat-sen University|Department of Epidemiology, School of Public Healt Sun Yat-sen University 2 0.95425 0.94313 0.05313 0.05246 0.77268 0.77461 0.52616 0.5227 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2023-03-29 Adult Adult Bone or Cartilage Skeletal Element
74711 74711 SRR24003736 SRX19807132 SRS17168877 SRP429947 PRJNA949785 Sequencing of zebrafish bone tissues PRJNA949785 Other Transcriptomics was used to investigate sensitive genes associated with exercise improved bone mass         eight month zebrafish bone tissues   breed:Not applicable|age:8 month|sex:male|tissue:b1|BioSampleModel:Model organism or animal                 RNA Seq of b1 tissue in zebrafish case2 5 case2 5 Qualified total RNA was purified by DNase I and mRNA was enriched by adding OligodT attached magnetic beads. Subsequently fragment buffer was added to cleave the mRNA into small fragments. Fragmented mRNA was used as a template for reverse transcription to generate the first cDNA strand and then the second cDNA strand was generated. End repair and adaptor ligation were performed by adding A tailing Mix and RNA Index Adapters and then PCR amplification was performed. Single strand circle DNA library was obtained by recovering and cycling the PCR products. The final library was obtained by purifying the linear DNA molecules that were not cycled. The quality of the final library was tested. The qualified library was replicated by rolling circle replication to form DNA nanospheres DNBs. DNBs were added to the mesh holes of a nanochip using high density DNA nanochip technology. Subsequently sequencing was performed on the BGIISEQ500 platform BGI Shenzhen Guangdong China using combined probe anchored polymerisation.     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP429947     case2_5_1.fq.gz case2_5_2.fq.gz fastq fastq 6810815400.0 22702718.0 case2 5 1.fq.gz 0:150 1:150 A:1861549181;C:1529649127;G:1553365612;T:1866251480;N:0 150 150     1861549181 1529649127 1553365612 1866251480 0 SRX19807132 SRS17168877 SRA1612461 Sun Yat-sen University|Department of Epidemiology, School of Public Healt Sun Yat-sen University 2 0.94842 0.93757 0.06448 0.06317 0.74036 0.74097 0.53479 0.52393 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2023-03-29 Adult Adult Bone or Cartilage Skeletal Element
74712 74712 SRR24003737 SRX19807131 SRS17168877 SRP429947 PRJNA949785 Sequencing of zebrafish bone tissues PRJNA949785 Other Transcriptomics was used to investigate sensitive genes associated with exercise improved bone mass         eight month zebrafish bone tissues   breed:Not applicable|age:8 month|sex:male|tissue:b1|BioSampleModel:Model organism or animal                 RNA Seq of b1 tissue in zebrafish control2 2 control2 2 Qualified total RNA was purified by DNase I and mRNA was enriched by adding OligodT attached magnetic beads. Subsequently fragment buffer was added to cleave the mRNA into small fragments. Fragmented mRNA was used as a template for reverse transcription to generate the first cDNA strand and then the second cDNA strand was generated. End repair and adaptor ligation were performed by adding A tailing Mix and RNA Index Adapters and then PCR amplification was performed. Single strand circle DNA library was obtained by recovering and cycling the PCR products. The final library was obtained by purifying the linear DNA molecules that were not cycled. The quality of the final library was tested. The qualified library was replicated by rolling circle replication to form DNA nanospheres DNBs. DNBs were added to the mesh holes of a nanochip using high density DNA nanochip technology. Subsequently sequencing was performed on the BGIISEQ500 platform BGI Shenzhen Guangdong China using combined probe anchored polymerisation.     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP429947     control2_2_1.fq.gz control2_2_2.fq.gz fastq fastq 6693643800.0 22312146.0 control2 2 1.fq.gz 0:150 1:150 A:1846873501;C:1499207913;G:1490122627;T:1857439759;N:0 150 150     1846873501 1499207913 1490122627 1857439759 0 SRX19807131 SRS17168877 SRA1612461 Sun Yat-sen University|Department of Epidemiology, School of Public Healt Sun Yat-sen University 2 0.93282 0.93092 0.09007 0.0899 0.68672 0.68793 0.55221 0.55318 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2023-03-29 Adult Adult Bone or Cartilage Skeletal Element
74713 74713 SRR24003738 SRX19807130 SRS17168877 SRP429947 PRJNA949785 Sequencing of zebrafish bone tissues PRJNA949785 Other Transcriptomics was used to investigate sensitive genes associated with exercise improved bone mass         eight month zebrafish bone tissues   breed:Not applicable|age:8 month|sex:male|tissue:b1|BioSampleModel:Model organism or animal                 RNA Seq of b1 tissue in zebrafish control2 1 control2 1 Qualified total RNA was purified by DNase I and mRNA was enriched by adding OligodT attached magnetic beads. Subsequently fragment buffer was added to cleave the mRNA into small fragments. Fragmented mRNA was used as a template for reverse transcription to generate the first cDNA strand and then the second cDNA strand was generated. End repair and adaptor ligation were performed by adding A tailing Mix and RNA Index Adapters and then PCR amplification was performed. Single strand circle DNA library was obtained by recovering and cycling the PCR products. The final library was obtained by purifying the linear DNA molecules that were not cycled. The quality of the final library was tested. The qualified library was replicated by rolling circle replication to form DNA nanospheres DNBs. DNBs were added to the mesh holes of a nanochip using high density DNA nanochip technology. Subsequently sequencing was performed on the BGIISEQ500 platform BGI Shenzhen Guangdong China using combined probe anchored polymerisation.     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP429947     control2_1_1.fq.gz control2_1_2.fq.gz fastq fastq 6629354100.0 22097847.0 control2 1 1.fq.gz 0:150 1:150 A:1819412655;C:1492313439;G:1486507818;T:1831120188;N:0 150 150     1819412655 1492313439 1486507818 1831120188 0 SRX19807130 SRS17168877 SRA1612461 Sun Yat-sen University|Department of Epidemiology, School of Public Healt Sun Yat-sen University 2 0.93273 0.93086 0.08814 0.08711 0.67748 0.67696 0.5355 0.54253 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2023-03-29 Adult Adult Bone or Cartilage Skeletal Element
76452 76452 SRR24950188 SRX20708357 SRS18001302 SRP444408 PRJNA984676 RNA Seq analyses of myocardium specific hey2 overexpressing zebrafish hearts and Adv Hey2 infected NRVMs PRJNA984676 Other To elucidate the molecular underpinning of cardiac dilation and myocardial mitochondrial dysfunction caused by hey2 induction we conducted RNA seq analyses in hey2 overexpression zebrafish hearts and control littermate hearts at 1 week or 1 month post 4 HT treatments. To further investigate the impact of Hey2 in mammalian cardiomyocytes and mitochondria we performed comparative analysis of transcriptome profiles on NRVMs infected with adenovirus containing Hey2 Adv Hey2 or vectors Adv Ctrl.       RNA Seq for myocardium specific hey2 overexpressing heart at 1 week post 4 HT treatments rep1 OE1w1   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:1 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:OE1w replicate 1|BioSampleModel:Model organism or animal                 RNA Seq for myocardium specific hey2 overexpressing heart at 1 week post 4 HT treatments rep1 OE1w replicate 1 OE1w replicate 1 RNA Seq for myocardium specific hey2 overexpressing heart at 1 week post 4 HT treatments replicate 1     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP444408     OE1w1_1.fq.gz OE1w1_2.fq.gz fastq fastq 6792141900.0 22640473.0 OE1w1 1.fq.gz 0:150 1:150 A:1821318465;C:1573309073;G:1556399365;T:1841095017;N:19980 150 150     1821318465 1573309073 1556399365 1841095017 19980 SRX20708357 SRS18001302 SRA1657339 East China Normal University|School of Life Sciences East China Normal University 2 0.92576 0.91367 0.07095 0.07022 0.74884 0.75012 0.52564 0.52623 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2023-06-16 Juvenile Juvenile Heart Cardiovascular System
76453 76453 SRR24950189 SRX20708356 SRS18001301 SRP444408 PRJNA984676 RNA Seq analyses of myocardium specific hey2 overexpressing zebrafish hearts and Adv Hey2 infected NRVMs PRJNA984676 Other To elucidate the molecular underpinning of cardiac dilation and myocardial mitochondrial dysfunction caused by hey2 induction we conducted RNA seq analyses in hey2 overexpression zebrafish hearts and control littermate hearts at 1 week or 1 month post 4 HT treatments. To further investigate the impact of Hey2 in mammalian cardiomyocytes and mitochondria we performed comparative analysis of transcriptome profiles on NRVMs infected with adenovirus containing Hey2 Adv Hey2 or vectors Adv Ctrl.       RNA Seq for control littermate hearts at 1 week post 4 HT treatments rep3 CTL1w3   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:1 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:CTL1w replicate 3|BioSampleModel:Model organism or animal                 RNA Seq for control littermate hearts at 1 week post 4 HT treatments rep3 CTL1w replicate 3 CTL1w replicate 3 RNA Seq for control littermate hearts at 1 week post 4 HT treatments replicate 3     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP444408     CTL1w3_2.fq.gz CTL1w3_1.fq.gz fastq fastq 6615956700.0 22053189.0 CTL1w3 1.fq.gz 0:150 1:150 A:1790825663;C:1516487260;G:1497904437;T:1810720169;N:19171 150 150     1790825663 1516487260 1497904437 1810720169 19171 SRX20708356 SRS18001301 SRA1657339 East China Normal University|School of Life Sciences East China Normal University 2 0.93183 0.91562 0.07118 0.07012 0.7655 0.7682 0.53912 0.52899 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2023-06-16 Juvenile Juvenile Heart Cardiovascular System
76454 76454 SRR24950190 SRX20708355 SRS18001300 SRP444408 PRJNA984676 RNA Seq analyses of myocardium specific hey2 overexpressing zebrafish hearts and Adv Hey2 infected NRVMs PRJNA984676 Other To elucidate the molecular underpinning of cardiac dilation and myocardial mitochondrial dysfunction caused by hey2 induction we conducted RNA seq analyses in hey2 overexpression zebrafish hearts and control littermate hearts at 1 week or 1 month post 4 HT treatments. To further investigate the impact of Hey2 in mammalian cardiomyocytes and mitochondria we performed comparative analysis of transcriptome profiles on NRVMs infected with adenovirus containing Hey2 Adv Hey2 or vectors Adv Ctrl.       RNA Seq for control littermate hearts at 1 week post 4 HT treatments rep2 CTL1w2   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:1 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:CTL1w replicate 2|BioSampleModel:Model organism or animal                 RNA Seq for control littermate hearts at 1 week post 4 HT treatments rep2 CTL1w replicate 2 CTL1w replicate 2 RNA Seq for control littermate hearts at 1 week post 4 HT treatments replicate 2     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP444408     CTL1w2_1.fq.gz CTL1w2_2.fq.gz fastq fastq 6582133800.0 21940446.0 CTL1w2 1.fq.gz 0:150 1:150 A:1766322301;C:1524014072;G:1506429130;T:1785350030;N:18267 150 150     1766322301 1524014072 1506429130 1785350030 18267 SRX20708355 SRS18001300 SRA1657339 East China Normal University|School of Life Sciences East China Normal University 2 0.93867 0.92389 0.06545 0.06458 0.76357 0.76583 0.53821 0.54255 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2023-06-16 Juvenile Juvenile Heart Cardiovascular System
76455 76455 SRR24950191 SRX20708354 SRS18001299 SRP444408 PRJNA984676 RNA Seq analyses of myocardium specific hey2 overexpressing zebrafish hearts and Adv Hey2 infected NRVMs PRJNA984676 Other To elucidate the molecular underpinning of cardiac dilation and myocardial mitochondrial dysfunction caused by hey2 induction we conducted RNA seq analyses in hey2 overexpression zebrafish hearts and control littermate hearts at 1 week or 1 month post 4 HT treatments. To further investigate the impact of Hey2 in mammalian cardiomyocytes and mitochondria we performed comparative analysis of transcriptome profiles on NRVMs infected with adenovirus containing Hey2 Adv Hey2 or vectors Adv Ctrl.       RNA Seq for control littermate hearts at 1 week post 4 HT treatments rep1 CTL1w1   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:1 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:CTL1w replicate 1|BioSampleModel:Model organism or animal                 RNA Seq for control littermate hearts at 1 week post 4 HT treatments rep1 CTL1w replicate 1 CTL1w replicate 1 RNA Seq for control littermate hearts at 1 week post 4 HT treatments replicate 1     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP444408     CTL1w1_2.fq.gz CTL1w1_1.fq.gz fastq fastq 6781172100.0 22603907.0 CTL1w1 1.fq.gz 0:150 1:150 A:1804085074;C:1581571692;G:1567430366;T:1828066356;N:18612 150 150     1804085074 1581571692 1567430366 1828066356 18612 SRX20708354 SRS18001299 SRA1657339 East China Normal University|School of Life Sciences East China Normal University 2 0.93867 0.91921 0.06237 0.06146 0.75858 0.76246 0.53972 0.53069 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2023-06-16 Juvenile Juvenile Heart Cardiovascular System
76456 76456 SRR24950192 SRX20708353 SRS18001298 SRP444408 PRJNA984676 RNA Seq analyses of myocardium specific hey2 overexpressing zebrafish hearts and Adv Hey2 infected NRVMs PRJNA984676 Other To elucidate the molecular underpinning of cardiac dilation and myocardial mitochondrial dysfunction caused by hey2 induction we conducted RNA seq analyses in hey2 overexpression zebrafish hearts and control littermate hearts at 1 week or 1 month post 4 HT treatments. To further investigate the impact of Hey2 in mammalian cardiomyocytes and mitochondria we performed comparative analysis of transcriptome profiles on NRVMs infected with adenovirus containing Hey2 Adv Hey2 or vectors Adv Ctrl.       RNA Seq for myocardium specific hey2 overexpressing hearts at 2 month post 4 HT treatments rep3 OE3   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:OE replicate 3|BioSampleModel:Model organism or animal                 RNA Seq for myocardium specific hey2 overexpressing hearts at 1 month post 4 HT treatments rep3 OE replicate 3 OE replicate 3 RNA Seq for myocardium specific hey2 overexpressing hearts at 1 month post 4 HT treatments replicate 3     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP444408     OE3_1.fq.gz OE3_2.fq.gz fastq fastq 6698218800.0 22327396.0 OE3 1.fq.gz 0:150 1:150 A:1810250125;C:1538223397;G:1526099522;T:1823631856;N:13900 150 150     1810250125 1538223397 1526099522 1823631856 13900 SRX20708353 SRS18001298 SRA1657339 East China Normal University|School of Life Sciences East China Normal University 2 0.94309 0.93987 0.07727 0.07734 0.75645 0.75659 0.5045 0.52615 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2023-06-16 Adult Adult Heart Cardiovascular System
76457 76457 SRR24950193 SRX20708352 SRS18001297 SRP444408 PRJNA984676 RNA Seq analyses of myocardium specific hey2 overexpressing zebrafish hearts and Adv Hey2 infected NRVMs PRJNA984676 Other To elucidate the molecular underpinning of cardiac dilation and myocardial mitochondrial dysfunction caused by hey2 induction we conducted RNA seq analyses in hey2 overexpression zebrafish hearts and control littermate hearts at 1 week or 1 month post 4 HT treatments. To further investigate the impact of Hey2 in mammalian cardiomyocytes and mitochondria we performed comparative analysis of transcriptome profiles on NRVMs infected with adenovirus containing Hey2 Adv Hey2 or vectors Adv Ctrl.       RNA Seq for myocardium specific hey2 overexpressing hearts at 2 month post 4 HT treatments rep2 OE2   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:OE replicate 2|BioSampleModel:Model organism or animal                 RNA Seq for myocardium specific hey2 overexpressing hearts at 1 month post 4 HT treatments rep2 OE replicate 2 OE replicate 2 RNA Seq for myocardium specific hey2 overexpressing hearts at 1 month post 4 HT treatments replicate 2     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP444408     OE2_2.fq.gz OE2_1.fq.gz fastq fastq 6714114300.0 22380381.0 OE2 1.fq.gz 0:150 1:150 A:1821324029;C:1535274751;G:1521032470;T:1836469467;N:13583 150 150     1821324029 1535274751 1521032470 1836469467 13583 SRX20708352 SRS18001297 SRA1657339 East China Normal University|School of Life Sciences East China Normal University 2 0.9438 0.94081 0.07627 0.07672 0.75116 0.75221 0.50222 0.53794 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2023-06-16 Adult Adult Heart Cardiovascular System
76458 76458 SRR24950194 SRX20708351 SRS18001296 SRP444408 PRJNA984676 RNA Seq analyses of myocardium specific hey2 overexpressing zebrafish hearts and Adv Hey2 infected NRVMs PRJNA984676 Other To elucidate the molecular underpinning of cardiac dilation and myocardial mitochondrial dysfunction caused by hey2 induction we conducted RNA seq analyses in hey2 overexpression zebrafish hearts and control littermate hearts at 1 week or 1 month post 4 HT treatments. To further investigate the impact of Hey2 in mammalian cardiomyocytes and mitochondria we performed comparative analysis of transcriptome profiles on NRVMs infected with adenovirus containing Hey2 Adv Hey2 or vectors Adv Ctrl.       RNA Seq for myocardium specific hey2 overexpressing hearts at 2 month post 4 HT treatments rep1 OE1   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:OE replicate 1|BioSampleModel:Model organism or animal                 RNA Seq for myocardium specific hey2 overexpressing hearts at 1 month post 4 HT treatments rep1 OE replicate 1 OE replicate 1 RNA Seq for myocardium specific hey2 overexpressing hearts at 1 month post 4 HT treatments replicate 1     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP444408     OE1_2.fq.gz OE1_1.fq.gz fastq fastq 6717241200.0 22390804.0 OE1 1.fq.gz 0:150 1:150 A:1820907924;C:1536957701;G:1517754438;T:1841608834;N:12303 150 150     1820907924 1536957701 1517754438 1841608834 12303 SRX20708351 SRS18001296 SRA1657339 East China Normal University|School of Life Sciences East China Normal University 2 0.94313 0.94062 0.07826 0.07784 0.75526 0.7556 0.52759 0.53976 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2023-06-16 Adult Adult Heart Cardiovascular System
76459 76459 SRR24950195 SRX20708350 SRS18001294 SRP444408 PRJNA984676 RNA Seq analyses of myocardium specific hey2 overexpressing zebrafish hearts and Adv Hey2 infected NRVMs PRJNA984676 Other To elucidate the molecular underpinning of cardiac dilation and myocardial mitochondrial dysfunction caused by hey2 induction we conducted RNA seq analyses in hey2 overexpression zebrafish hearts and control littermate hearts at 1 week or 1 month post 4 HT treatments. To further investigate the impact of Hey2 in mammalian cardiomyocytes and mitochondria we performed comparative analysis of transcriptome profiles on NRVMs infected with adenovirus containing Hey2 Adv Hey2 or vectors Adv Ctrl.       RNA Seq for control littermate hearts at 2 month post 4 HT treatments rep3 CTL3   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:CTL replicate 3|BioSampleModel:Model organism or animal                 RNA Seq for control littermate hearts at 1 month post 4 HT treatments rep3 CTL replicate 3 CTL replicate 3 RNA Seq for control littermate hearts at 1 month post 4 HT treatments replicate 3     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP444408     CTL3_1.fq.gz CTL3_2.fq.gz fastq fastq 6726357300.0 22421191.0 CTL3 1.fq.gz 0:150 1:150 A:1851349315;C:1512108580;G:1497745189;T:1865140192;N:14024 150 150     1851349315 1512108580 1497745189 1865140192 14024 SRX20708350 SRS18001294 SRA1657339 East China Normal University|School of Life Sciences East China Normal University 2 0.94596 0.94425 0.06888 0.0684 0.76368 0.76493 0.51461 0.51708 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2023-06-16 Adult Adult Heart Cardiovascular System
76460 76460 SRR24950198 SRX20708347 SRS18001292 SRP444408 PRJNA984676 RNA Seq analyses of myocardium specific hey2 overexpressing zebrafish hearts and Adv Hey2 infected NRVMs PRJNA984676 Other To elucidate the molecular underpinning of cardiac dilation and myocardial mitochondrial dysfunction caused by hey2 induction we conducted RNA seq analyses in hey2 overexpression zebrafish hearts and control littermate hearts at 1 week or 1 month post 4 HT treatments. To further investigate the impact of Hey2 in mammalian cardiomyocytes and mitochondria we performed comparative analysis of transcriptome profiles on NRVMs infected with adenovirus containing Hey2 Adv Hey2 or vectors Adv Ctrl.       RNA Seq for myocardium specific hey2 overexpressing heart at 1 week post 4 HT treatments rep3 OE1w3   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:1 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:OE1w replicate 3|BioSampleModel:Model organism or animal                 RNA Seq for myocardium specific hey2 overexpressing heart at 1 week post 4 HT treatments rep3 OE1w replicate 3 OE1w replicate 3 RNA Seq for myocardium specific hey2 overexpressing heart at 1 week post 4 HT treatments replicate 3     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP444408     OE1w3_2.fq.gz OE1w3_1.fq.gz fastq fastq 6593130600.0 21977102.0 OE1w3 1.fq.gz 0:150 1:150 A:1770061078;C:1529682678;G:1510949508;T:1782338558;N:98778 150 150     1770061078 1529682678 1510949508 1782338558 98778 SRX20708347 SRS18001292 SRA1657339 East China Normal University|School of Life Sciences East China Normal University 2 0.93503 0.922 0.06588 0.06574 0.7503 0.75201 0.52969 0.53743 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2023-06-16 Juvenile Juvenile Heart Cardiovascular System
76461 76461 SRR24950199 SRX20708346 SRS18001291 SRP444408 PRJNA984676 RNA Seq analyses of myocardium specific hey2 overexpressing zebrafish hearts and Adv Hey2 infected NRVMs PRJNA984676 Other To elucidate the molecular underpinning of cardiac dilation and myocardial mitochondrial dysfunction caused by hey2 induction we conducted RNA seq analyses in hey2 overexpression zebrafish hearts and control littermate hearts at 1 week or 1 month post 4 HT treatments. To further investigate the impact of Hey2 in mammalian cardiomyocytes and mitochondria we performed comparative analysis of transcriptome profiles on NRVMs infected with adenovirus containing Hey2 Adv Hey2 or vectors Adv Ctrl.       RNA Seq for myocardium specific hey2 overexpressing heart at 1 week post 4 HT treatments rep2 OE1w2   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:1 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:OE1w replicate 2|BioSampleModel:Model organism or animal                 RNA Seq for myocardium specific hey2 overexpressing heart at 1 week post 4 HT treatments rep2 OE1w replicate 2 OE1w replicate 2 RNA Seq for myocardium specific hey2 overexpressing heart at 1 week post 4 HT treatments replicate 2     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP444408     OE1w2_2.fq.gz OE1w2_1.fq.gz fastq fastq 6742724700.0 22475749.0 OE1w2 1.fq.gz 0:150 1:150 A:1802906309;C:1568304698;G:1553625077;T:1817795677;N:92939 150 150     1802906309 1568304698 1553625077 1817795677 92939 SRX20708346 SRS18001291 SRA1657339 East China Normal University|School of Life Sciences East China Normal University 2 0.93354 0.91844 0.06989 0.0686 0.74665 0.74888 0.52723 0.52812 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2023-06-16 Juvenile Juvenile Heart Cardiovascular System
76462 76462 SRR24950200 SRX20708345 SRS18001290 SRP444408 PRJNA984676 RNA Seq analyses of myocardium specific hey2 overexpressing zebrafish hearts and Adv Hey2 infected NRVMs PRJNA984676 Other To elucidate the molecular underpinning of cardiac dilation and myocardial mitochondrial dysfunction caused by hey2 induction we conducted RNA seq analyses in hey2 overexpression zebrafish hearts and control littermate hearts at 1 week or 1 month post 4 HT treatments. To further investigate the impact of Hey2 in mammalian cardiomyocytes and mitochondria we performed comparative analysis of transcriptome profiles on NRVMs infected with adenovirus containing Hey2 Adv Hey2 or vectors Adv Ctrl.       RNA Seq for control littermate hearts at 2 month post 4 HT treatments rep2 CTL2   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:CTL replicate 2|BioSampleModel:Model organism or animal                 RNA Seq for control littermate hearts at 1 month post 4 HT treatments rep2 CTL replicate 2 CTL replicate 2 RNA Seq for control littermate hearts at 1 month post 4 HT treatments replicate 2     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP444408     CTL2_2.fq.gz CTL2_1.fq.gz fastq fastq 6733756500.0 22445855.0 CTL2 1.fq.gz 0:150 1:150 A:1852262818;C:1514940822;G:1497196598;T:1869342344;N:13918 150 150     1852262818 1514940822 1497196598 1869342344 13918 SRX20708345 SRS18001290 SRA1657339 East China Normal University|School of Life Sciences East China Normal University 2 0.94813 0.94562 0.07048 0.06993 0.76049 0.76039 0.51828 0.52084 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2023-06-16 Adult Adult Heart Cardiovascular System
76463 76463 SRR24950201 SRX20708344 SRS18001289 SRP444408 PRJNA984676 RNA Seq analyses of myocardium specific hey2 overexpressing zebrafish hearts and Adv Hey2 infected NRVMs PRJNA984676 Other To elucidate the molecular underpinning of cardiac dilation and myocardial mitochondrial dysfunction caused by hey2 induction we conducted RNA seq analyses in hey2 overexpression zebrafish hearts and control littermate hearts at 1 week or 1 month post 4 HT treatments. To further investigate the impact of Hey2 in mammalian cardiomyocytes and mitochondria we performed comparative analysis of transcriptome profiles on NRVMs infected with adenovirus containing Hey2 Adv Hey2 or vectors Adv Ctrl.       RNA Seq for control littermate hearts at 2 month post 4 HT treatments rep1 CTL1   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:CTL replicate 1|BioSampleModel:Model organism or animal                 RNA Seq for control littermate hearts at 1 month post 4 HT treatments rep1 CTL replicate 1 CTL replicate 1 RNA Seq for control littermate hearts at 1 month post 4 HT treatments replicate 1     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP444408     CTL1_1.fq.gz CTL1_2.fq.gz fastq fastq 6707934300.0 22359781.0 CTL1 1.fq.gz 0:150 1:150 A:1839600655;C:1511741414;G:1501312980;T:1855265253;N:13998 150 150     1839600655 1511741414 1501312980 1855265253 13998 SRX20708344 SRS18001289 SRA1657339 East China Normal University|School of Life Sciences East China Normal University 2 0.94692 0.94575 0.06938 0.06922 0.76613 0.76654 0.51238 0.49316 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2023-06-16 Adult Adult Heart Cardiovascular System

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;