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run_metadata

438 rows where experiment.library_selection = "PCR", experiment.library_strategy = "AMPLICON" and technology = "unknown"

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devstage_curation 5

tissue_curation_coarse 3

tissue_curation 3

experiment.platform 2

experiment.library_layout 2

devstage_curation_coarse 2

technology 1

  • unknown · 438 ✖

experiment.library_strategy 1

  • AMPLICON · 438 ✖

experiment.library_source 1

experiment.library_selection 1

  • PCR · 438 ✖
Link rowid ▼ run.accession experiment.accession sample.accession study.accession bioproject study.title study.alias study.type study.abstract study.attributes study.PMIDs sample.description sample.title sample.alias sample.centername sample.attributes GEOsample.title GEOsample.dataprocessing GEOsample.source GEOsample.treatmentprotocol GEOsample.extractprotocol GEOsample.growthprotocol GEOsample.characteristics GEOsample.accession experiment.title experiment.alias experiment.library_name experiment.design_description experiment.library_construction_protocol experiment.attributes experiment.library_strategy experiment.library_source experiment.library_selection experiment.library_layout experiment.platform experiment.instrument_model experiment.spot_descriptor experiment.study_ref run.title run.attributes run.filename run.semantic_name run.total_bases run.total_spots run.alias run.read_lengths run.base_counts run.r1_length run.r2_length run.r3_length run.r4_length run.Acount run.Ccount run.Gcount run.Tcount run.Ncount run.experiment run.pool_member submission.accession submission.srasource submission.bioprojectsource seqdetective.n_mates seqdetective.mapping_rate.mate1 seqdetective.mapping_rate.mate2 seqdetective.nofeature_rate.mate1 seqdetective.nofeature_rate.mate2 seqdetective.sparsity.mate1 seqdetective.sparsity.mate2 seqdetective.pos_strand_rate.mate1 seqdetective.pos_strand_rate.mate2 seqdetective.readlen.mate1 seqdetective.readlen.mate2 seqdetective.judgement.mate1 seqdetective.judgement.mate2 seqdetective.judgement.reason platform_family instrument_generation read_bias selection_class prep_kit sc_or_bulk tech_class technology tech_variant submission.bioprojectsource.country earliest_date devstage_curation devstage_curation_coarse tissue_curation tissue_curation_coarse
42968 42968 SRR5892584 SRX3058354 SRS2404188 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         MF   breed:TU|isolation source:lab|collection date:2017 01 27|geo loc name:China|tissue:embryos|age:32hpf|identified by:MF REF DMSO 3|BioSampleModel:Invertebrate                 MF DMSO 3 40 40 solvent control for MF treatments replication 3     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     MF-DMSO-3.gz fastq 125472592.0 1204687.0 MF DMSO 3.gz 0:104.15 A:29674919;C:33269421;G:33090427;T:29437825;N:0 104       29674919 33269421 33090427 29437825 0 SRX3058354 SRS2404188 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.96782   0.00028   0.97096   0.44758   89   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
42969 42969 SRR5892585 SRX3058353 SRS2404188 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         MF   breed:TU|isolation source:lab|collection date:2017 01 27|geo loc name:China|tissue:embryos|age:32hpf|identified by:MF REF DMSO 3|BioSampleModel:Invertebrate                 MF DMSO 2 39 39 solvent control for MF treatments replication 2     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     MF-DMSO-2.gz fastq 99884913.0 971141.0 MF DMSO 2.gz 0:102.85 A:23598949;C:26322425;G:26544412;T:23419127;N:0 102       23598949 26322425 26544412 23419127 0 SRX3058353 SRS2404188 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.97296   0.00027   0.97092   0.46658   95   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
42970 42970 SRR5892586 SRX3058352 SRS2404189 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         DMSO   breed:TU|isolation source:lab|collection date:2016 11 07|geo loc name:China|tissue:embryos|age:32hpf|identified by:DMSO 1 batchA|BioSampleModel:Invertebrate                 DMSO batchD 2 71 71 embryo post 8 32hpf solvent control exposurereplication 2 in forth batch     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     DMSO-batch4-2.gz fastq 121679118.0 1146532.0 DMSO batchD 2.gz 0:106.13 A:28957172;C:31903260;G:31955173;T:28863513;N:0 106       28957172 31903260 31955173 28863513 0 SRX3058352 SRS2404189 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.94833   0.0003   0.97019   0.46856   99   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
42971 42971 SRR5892587 SRX3058351 SRS2404189 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         DMSO   breed:TU|isolation source:lab|collection date:2016 11 07|geo loc name:China|tissue:embryos|age:32hpf|identified by:DMSO 1 batchA|BioSampleModel:Invertebrate                 DMSO batchE 1 73 73 embryo post 8 32hpf solvent control exposurereplication 1 in fifth batch     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     DMSO-batch5-1.gz fastq 123397953.0 1167071.0 DMSO batchE 1.gz 0:105.73 A:28979230;C:32683758;G:32531951;T:29203014;N:0 105       28979230 32683758 32531951 29203014 0 SRX3058351 SRS2404189 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.95859   0.00022   0.97072   0.45965   53   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
42972 42972 SRR5892588 SRX3058350 SRS2404188 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         MF   breed:TU|isolation source:lab|collection date:2017 01 27|geo loc name:China|tissue:embryos|age:32hpf|identified by:MF REF DMSO 3|BioSampleModel:Invertebrate                 MF REF2 32 32 embryo post 8 32hpf 2 REF MFexposure     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     MF-REF2.gz fastq 118386968.0 1138153.0 MF REF2.gz 0:104.02 A:27897906;C:31473696;G:31180817;T:27834549;N:0 104       27897906 31473696 31180817 27834549 0 SRX3058350 SRS2404188 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.97077   0.00031   0.97078   0.4628   98   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
42973 42973 SRR5892589 SRX3058349 SRS2404188 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         MF   breed:TU|isolation source:lab|collection date:2017 01 27|geo loc name:China|tissue:embryos|age:32hpf|identified by:MF REF DMSO 3|BioSampleModel:Invertebrate                 MF REF10 31 31 embryo post 8 32hpf 10 REF MF exposure     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     MF-REF10.gz fastq 102454725.0 1000173.0 MF REF10.gz 0:102.44 A:24358570;C:27069059;G:26881004;T:24146092;N:0 102       24358570 27069059 26881004 24146092 0 SRX3058349 SRS2404188 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.97646   0.00032   0.97096   0.44494   99   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
42974 42974 SRR5892590 SRX3058348 SRS2404188 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         MF   breed:TU|isolation source:lab|collection date:2017 01 27|geo loc name:China|tissue:embryos|age:32hpf|identified by:MF REF DMSO 3|BioSampleModel:Invertebrate                 MF REF0.08 34 34 embryo post 8 32hpf 0.08 REF MF exposure     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     MF-REF0.08.gz fastq 120057844.0 1117682.0 MF REF0.08.gz 0:107.42 A:28224691;C:31792991;G:31542256;T:28497906;N:0 107       28224691 31792991 31542256 28497906 0 SRX3058348 SRS2404188 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.95452   0.0002   0.97114   0.45435   99   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
42975 42975 SRR5892591 SRX3058347 SRS2404188 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         MF   breed:TU|isolation source:lab|collection date:2017 01 27|geo loc name:China|tissue:embryos|age:32hpf|identified by:MF REF DMSO 3|BioSampleModel:Invertebrate                 MF REF0.4 33 33 embryo post 8 32hpf 0.4 REF MF exposure     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     MF-REF0.4.gz fastq 180105044.0 1745166.0 MF REF0.4.gz 0:103.20 A:42458831;C:47872884;G:47284824;T:42488505;N:0 103       42458831 47872884 47284824 42488505 0 SRX3058347 SRS2404188 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.97346   0.0003   0.97076   0.4492   99   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
42976 42976 SRR5892592 SRX3058346 SRS2404188 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         MF   breed:TU|isolation source:lab|collection date:2017 01 27|geo loc name:China|tissue:embryos|age:32hpf|identified by:MF REF DMSO 3|BioSampleModel:Invertebrate                 MF REF0.0032 36 36 embryo post 8 32hpf 0.0032 REF MF exposure     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     MF-REF0.0032.gz fastq 118651783.0 1150496.0 MF REF0.0032.gz 0:103.13 A:28100611;C:31226792;G:31323929;T:28000451;N:0 103       28100611 31226792 31323929 28000451 0 SRX3058346 SRS2404188 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.97372   0.00029   0.97076   0.44374   209   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
42977 42977 SRR5892593 SRX3058345 SRS2404188 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         MF   breed:TU|isolation source:lab|collection date:2017 01 27|geo loc name:China|tissue:embryos|age:32hpf|identified by:MF REF DMSO 3|BioSampleModel:Invertebrate                 MF REF0.016 35 35 embryo post 8 32hpf 0.016 REF MF exposure     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     MF-REF0.016.gz fastq 120264407.0 1144665.0 MF REF0.016.gz 0:105.07 A:28327111;C:31914661;G:31543876;T:28478759;N:0 105       28327111 31914661 31543876 28478759 0 SRX3058345 SRS2404188 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.96809   0.00037   0.97021   0.476   95   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
42978 42978 SRR5892594 SRX3058344 SRS2404188 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         MF   breed:TU|isolation source:lab|collection date:2017 01 27|geo loc name:China|tissue:embryos|age:32hpf|identified by:MF REF DMSO 3|BioSampleModel:Invertebrate                 MF DMSO 1 38 38 solvent control for MF treatments replication 1     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     MF-DMSO-1.gz fastq 112685903.0 1086206.0 MF DMSO 1.gz 0:103.74 A:26477784;C:30135462;G:29566470;T:26506187;N:0 103       26477784 30135462 29566470 26506187 0 SRX3058344 SRS2404188 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.96856   0.00033   0.97053   0.47169   99   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
42979 42979 SRR5892595 SRX3058343 SRS2404188 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         MF   breed:TU|isolation source:lab|collection date:2017 01 27|geo loc name:China|tissue:embryos|age:32hpf|identified by:MF REF DMSO 3|BioSampleModel:Invertebrate                 MF REF0.00064 37 37 embryo post 8 32hpf 0.00064 REF MF exposure     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     MF-REF0.00064.gz fastq 138041498.0 1329985.0 MF REF0.00064.gz 0:103.79 A:32831449;C:36507596;G:36517879;T:32184574;N:0 103       32831449 36507596 36517879 32184574 0 SRX3058343 SRS2404188 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.9711   0.00032   0.97037   0.45908   99   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
42980 42980 SRR5892596 SRX3058342 SRS2404190 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         BPA   breed:TU|isolation source:lab|collection date:2017 01 13|geo loc name:China|tissue:embryos|age:32hpf|identified by:BPA 10 1 batchA|BioSampleModel:Invertebrate                 BPA batchA DMSO 3 14 14 solvent control for BPA treatments replication 3     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     BPA-batch1-DMSO-3.gz fastq 128677198.0 1267014.0 BPA batchA DMSO 3.gz 0:101.56 A:30121409;C:34158183;G:33947254;T:30450352;N:0 101       30121409 34158183 33947254 30450352 0 SRX3058342 SRS2404190 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.9747   0.00038   0.96997   0.45436   39   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
42981 42981 SRR5892597 SRX3058341 SRS2404190 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         BPA   breed:TU|isolation source:lab|collection date:2017 01 13|geo loc name:China|tissue:embryos|age:32hpf|identified by:BPA 10 1 batchA|BioSampleModel:Invertebrate                 BPA batchA DMSO 2 13 13 solvent control for BPA treatments replication 2     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     BPA-batch1-DMSO-2.gz fastq 139753534.0 1344733.0 BPA batchA DMSO 2.gz 0:103.93 A:32634342;C:37124460;G:36974717;T:33020015;N:0 103       32634342 37124460 36974717 33020015 0 SRX3058341 SRS2404190 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.96389   0.0003   0.97061   0.4625   130   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
42982 42982 SRR5892598 SRX3058340 SRS2404190 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         BPA   breed:TU|isolation source:lab|collection date:2017 01 13|geo loc name:China|tissue:embryos|age:32hpf|identified by:BPA 10 1 batchA|BioSampleModel:Invertebrate                 BPA batchA DMSO 1 12 12 solvent control for BPA treatments replication 1     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     BPA-batch1-DMSO-1.gz fastq 87146396.0 838028.0 BPA batchA DMSO 1.gz 0:103.99 A:20425737;C:23194839;G:22979017;T:20546803;N:0 103       20425737 23194839 22979017 20546803 0 SRX3058340 SRS2404190 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.96674   0.00031   0.97023   0.45374   293   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
42983 42983 SRR5892599 SRX3058339 SRS2404190 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         BPA   breed:TU|isolation source:lab|collection date:2017 01 13|geo loc name:China|tissue:embryos|age:32hpf|identified by:BPA 10 1 batchA|BioSampleModel:Invertebrate                 BPA batchA 0.00001米收 11 11 embryo post 8 32hpf 0.00001米收 BPA exposure     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     BPA-batch1-0.00001.gz fastq 181136622.0 1697148.0 BPA batchA 0.00001.gz 0:106.73 A:42674421;C:48091657;G:47628809;T:42741735;N:0 106       42674421 48091657 47628809 42741735 0 SRX3058339 SRS2404190 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.94555   0.00034   0.96995   0.46606   127   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
42984 42984 SRR5892600 SRX3058338 SRS2404190 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         BPA   breed:TU|isolation source:lab|collection date:2017 01 13|geo loc name:China|tissue:embryos|age:32hpf|identified by:BPA 10 1 batchA|BioSampleModel:Invertebrate                 BPA batchB DMSO 1 18 18 solvent control for BPA treatments replication 1 of second batch     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     BPA-batch2-DMSO-1.gz fastq 190360408.0 1826565.0 BPA batchB DMSO 1.gz 0:104.22 A:45053834;C:50530050;G:49994950;T:44781574;N:0 104       45053834 50530050 49994950 44781574 0 SRX3058338 SRS2404190 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.95851   0.0005   0.97064   0.48533   98   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
42985 42985 SRR5892601 SRX3058337 SRS2404190 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         BPA   breed:TU|isolation source:lab|collection date:2017 01 13|geo loc name:China|tissue:embryos|age:32hpf|identified by:BPA 10 1 batchA|BioSampleModel:Invertebrate                 BPA batchB 10米收 3 17 17 embryo post 8 32hpf 10米收 BPA exposure replication 3 of second batch     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     BPA-batch2-10-3.gz fastq 129958171.0 1234884.0 BPA batchB 10 3.gz 0:105.24 A:30593687;C:34649249;G:33959196;T:30756039;N:0 105       30593687 34649249 33959196 30756039 0 SRX3058337 SRS2404190 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.95837   0.00038   0.97021   0.43259   90   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
42986 42986 SRR5892602 SRX3058336 SRS2404190 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         BPA   breed:TU|isolation source:lab|collection date:2017 01 13|geo loc name:China|tissue:embryos|age:32hpf|identified by:BPA 10 1 batchA|BioSampleModel:Invertebrate                 BPA batchB 10米收 2 16 16 embryo post 8 32hpf 10米收 BPA exposure replication 2 of second batch     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     BPA-batch2-10-2.gz fastq 111526287.0 1065508.0 BPA batchB 10 2.gz                       SRX3058336 SRS2404190 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.95874   0.00036   0.97088   0.47485   91   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
42987 42987 SRR5892603 SRX3058335 SRS2404190 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         BPA   breed:TU|isolation source:lab|collection date:2017 01 13|geo loc name:China|tissue:embryos|age:32hpf|identified by:BPA 10 1 batchA|BioSampleModel:Invertebrate                 BPA batchB 10米收 1 15 15 embryo post 8 32hpf 10米收 BPA exposure replication 1 of second batch     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     BPA-batch2-10-1.gz fastq 148236004.0 1405950.0 BPA batchB 10 1.gz 0:105.43 A:34932381;C:39440691;G:38952209;T:34910723;N:0 105       34932381 39440691 38952209 34910723 0 SRX3058335 SRS2404190 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.94847   0.00039   0.97104   0.44543   147   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
42988 42988 SRR5892604 SRX3058334 SRS2404191 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         RW   breed:TU|isolation source:lab|collection date:2017 01 27|geo loc name:China|tissue:embryos|age:32hpf|identified by:RW REF10|BioSampleModel:Invertebrate                 RW DMSO 1 58 58 solvent control for RW treatments replication 1     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     RW-DMSO-1.gz fastq 90296522.0 881436.0 RW DMSO 1.gz 0:102.44 A:21245787;C:24001505;G:23627578;T:21421652;N:0 102       21245787 24001505 23627578 21421652 0 SRX3058334 SRS2404191 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.97259   0.00038   0.97059   0.46653   89   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
42989 42989 SRR5892605 SRX3058333 SRS2404191 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         RW   breed:TU|isolation source:lab|collection date:2017 01 27|geo loc name:China|tissue:embryos|age:32hpf|identified by:RW REF10|BioSampleModel:Invertebrate                 RW REF0.00064 57 57 embryo post 8 32hpf 0.00064 REF RW exposure     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     RW-REF0.00064.gz fastq 119148594.0 1136559.0 RW REF0.00064.gz 0:104.83 A:28408032;C:31308813;G:31437438;T:27994311;N:0 104       28408032 31308813 31437438 27994311 0 SRX3058333 SRS2404191 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.96623   0.00038   0.97041   0.46244   99   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
42990 42990 SRR5892606 SRX3058332 SRS2404190 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         BPA   breed:TU|isolation source:lab|collection date:2017 01 13|geo loc name:China|tissue:embryos|age:32hpf|identified by:BPA 10 1 batchA|BioSampleModel:Invertebrate                 BPA batchB DMSO 3 20 20 solvent control for BPA treatments replication 3 of second batch     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     BPA-batch2-DMSO-3.gz fastq 132185040.0 1292999.0 BPA batchB DMSO 3.gz 0:102.23 A:31141243;C:35151786;G:34801554;T:31090457;N:0 102       31141243 35151786 34801554 31090457 0 SRX3058332 SRS2404190 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.96648   0.00044   0.9712   0.46006   89   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
42991 42991 SRR5892607 SRX3058331 SRS2404190 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         BPA   breed:TU|isolation source:lab|collection date:2017 01 13|geo loc name:China|tissue:embryos|age:32hpf|identified by:BPA 10 1 batchA|BioSampleModel:Invertebrate                 BPA batchB DMSO 2 19 19 solvent control for BPA treatments replication 2 of second batch     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     BPA-batch2-DMSO-2.gz fastq 198715047.0 1945773.0 BPA batchB DMSO 2.gz 0:102.13 A:46860862;C:52753060;G:52418957;T:46682168;N:0 102       46860862 52753060 52418957 46682168 0 SRX3058331 SRS2404190 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.96434   0.00054   0.97102   0.48108   89   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
42992 42992 SRR5892608 SRX3058330 SRS2404191 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         RW   breed:TU|isolation source:lab|collection date:2017 01 27|geo loc name:China|tissue:embryos|age:32hpf|identified by:RW REF10|BioSampleModel:Invertebrate                 RW REF0.08 54 54 embryo post 8 32hpf 0.08 REF RW exposure     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     RW-REF0.08.gz fastq 127136654.0 1214911.0 RW REF0.08.gz 0:104.65 A:30233425;C:33478062;G:33472258;T:29952909;N:0 104       30233425 33478062 33472258 29952909 0 SRX3058330 SRS2404191 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.96691   0.0003   0.97055   0.46819   99   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
42993 42993 SRR5892609 SRX3058329 SRS2404191 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         RW   breed:TU|isolation source:lab|collection date:2017 01 27|geo loc name:China|tissue:embryos|age:32hpf|identified by:RW REF10|BioSampleModel:Invertebrate                 RW REF0.4 53 53 embryo post 8 32hpf 0.4 REF RW exposure     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     RW-REF0.4.gz fastq 129289322.0 1244319.0 RW REF0.4.gz 0:103.90 A:30777918;C:34167997;G:33984655;T:30358752;N:0 103       30777918 34167997 33984655 30358752 0 SRX3058329 SRS2404191 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.97109   0.00047   0.97068   0.45379   99   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
42994 42994 SRR5892610 SRX3058328 SRS2404191 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         RW   breed:TU|isolation source:lab|collection date:2017 01 27|geo loc name:China|tissue:embryos|age:32hpf|identified by:RW REF10|BioSampleModel:Invertebrate                 RW REF2 52 52 embryo post 8 32hpf 2 REF RW exposure     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     RW-REF2.gz fastq 135626205.0 1336064.0 RW REF2.gz 0:101.51 A:31940807;C:35945322;G:35661876;T:32078200;N:0 101       31940807 35945322 35661876 32078200 0 SRX3058328 SRS2404191 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.97398   0.00037   0.971   0.44795   101   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
42995 42995 SRR5892611 SRX3058327 SRS2404191 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         RW   breed:TU|isolation source:lab|collection date:2017 01 27|geo loc name:China|tissue:embryos|age:32hpf|identified by:RW REF10|BioSampleModel:Invertebrate                 RW REF10 51 51 embryo post 8 32hpf 10 REF RW exposure     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     RW-REF10.gz fastq 114472762.0 1101957.0 RW REF10.gz 0:103.88 A:27165344;C:30313463;G:29951959;T:27041996;N:0 103       27165344 30313463 29951959 27041996 0 SRX3058327 SRS2404191 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.96908   0.0003   0.9709   0.47528   94   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
42996 42996 SRR5892612 SRX3058326 SRS2404191 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         RW   breed:TU|isolation source:lab|collection date:2017 01 27|geo loc name:China|tissue:embryos|age:32hpf|identified by:RW REF10|BioSampleModel:Invertebrate                 RW REF0.0032 56 56 embryo post 8 32hpf 0.0032 REF RW exposure     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     RW-REF0.0032.gz fastq 132020159.0 1278212.0 RW REF0.0032.gz 0:103.29 A:31188115;C:34954540;G:34762155;T:31115349;N:0 103       31188115 34954540 34762155 31115349 0 SRX3058326 SRS2404191 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.96987   0.00023   0.97128   0.4595   99   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
42997 42997 SRR5892613 SRX3058325 SRS2404189 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         DMSO   breed:TU|isolation source:lab|collection date:2016 11 07|geo loc name:China|tissue:embryos|age:32hpf|identified by:DMSO 1 batchA|BioSampleModel:Invertebrate                 DMSO batchE 3 75 75 embryo post 8 32hpf solvent control exposurereplication 3 in fifth batch     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     DMSO-batch5-3.gz fastq 134422048.0 1283130.0 DMSO batchE 3.gz 0:104.76 A:32023899;C:35569650;G:34994035;T:31834464;N:0 104       32023899 35569650 34994035 31834464 0 SRX3058325 SRS2404189 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.96792   0.00025   0.97023   0.47309   98   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
42998 42998 SRR5892614 SRX3058324 SRS2404191 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         RW   breed:TU|isolation source:lab|collection date:2017 01 27|geo loc name:China|tissue:embryos|age:32hpf|identified by:RW REF10|BioSampleModel:Invertebrate                 RW REF0.016 55 55 embryo post 8 32hpf 0.016 REF RW exposure     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     RW-REF0.016.gz fastq 89401238.0 882005.0 RW REF0.016.gz 0:101.36 A:21088292;C:23716541;G:23507120;T:21089285;N:0 101       21088292 23716541 23507120 21089285 0 SRX3058324 SRS2404191 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.97867   0.00029   0.97149   0.45787   98   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
42999 42999 SRR5892615 SRX3058323 SRS2404190 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         BPA   breed:TU|isolation source:lab|collection date:2017 01 13|geo loc name:China|tissue:embryos|age:32hpf|identified by:BPA 10 1 batchA|BioSampleModel:Invertebrate                 BPA batchA 10米收 2 2 2 embryo post 8 32hpf 10米收 BPA exposure replication 2     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     BPA-batch1-10-2.gz fastq 80529137.0 762390.0 BPA batchA 10 2.gz 0:105.63 A:18846226;C:21468380;G:21127663;T:19086868;N:0 105       18846226 21468380 21127663 19086868 0 SRX3058323 SRS2404190 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.96077   0.00029   0.97017   0.46214   127   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
43000 43000 SRR5892811 SRX3058322 SRS2404190 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         BPA   breed:TU|isolation source:lab|collection date:2017 01 13|geo loc name:China|tissue:embryos|age:32hpf|identified by:BPA 10 1 batchA|BioSampleModel:Invertebrate                 BPA batchA 10米收 1 1 1 embryo post 8 32hpf 10米收 BPA exposure replication 1     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     BPA-batch1-10-1.gz fastq 73829118.0 703769.0 BPA batchA 10 1 0:104.91 A:17327831;C:19655363;G:19439000;T:17406924;N:0 104       17327831 19655363 19439000 17406924 0 SRX3058322 SRS2404190 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.95952   0.00034   0.97005   0.44908   107   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
43001 43001 SRR5892616 SRX3058321 SRS2404190 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         BPA   breed:TU|isolation source:lab|collection date:2017 01 13|geo loc name:China|tissue:embryos|age:32hpf|identified by:BPA 10 1 batchA|BioSampleModel:Invertebrate                 BPA batchA 1米收 4 4 embryo post 8 32hpf 1米收 BPA exposure     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     BPA-batch1-1.gz fastq 78363051.0 736886.0 BPA batchA 1.gz 0:106.34 A:18388411;C:20802214;G:20646949;T:18525477;N:0 106       18388411 20802214 20646949 18525477 0 SRX3058321 SRS2404190 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.95116   0.00033   0.9707   0.4582   62   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
43002 43002 SRR5892617 SRX3058320 SRS2404190 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         BPA   breed:TU|isolation source:lab|collection date:2017 01 13|geo loc name:China|tissue:embryos|age:32hpf|identified by:BPA 10 1 batchA|BioSampleModel:Invertebrate                 BPA batchA 10米收 3 3 3 embryo post 8 32hpf 10米收 BPA exposure replication 3     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     BPA-batch1-10-3.gz fastq 80165508.0 756264.0 BPA batchA 10 3.gz 0:106.00 A:18721565;C:21425571;G:21071998;T:18946374;N:0 106       18721565 21425571 21071998 18946374 0 SRX3058320 SRS2404190 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.95754   0.0004   0.97011   0.43712   84   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
43003 43003 SRR5892618 SRX3058319 SRS2404190 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         BPA   breed:TU|isolation source:lab|collection date:2017 01 13|geo loc name:China|tissue:embryos|age:32hpf|identified by:BPA 10 1 batchA|BioSampleModel:Invertebrate                 BPA batchA 0.1米收 2 6 6 embryo post 8 32hpf 0.1米收 BPA exposure replication 2     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     BPA-batch1-0.1-2.gz fastq 179856447.0 1717239.0 BPA batchA 0.1 2.gz 0:104.74 A:42432781;C:47571274;G:47195620;T:42656772;N:0 104       42432781 47571274 47195620 42656772 0 SRX3058319 SRS2404190 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.95824   0.00044   0.97053   0.49329   180   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
43004 43004 SRR5892619 SRX3058318 SRS2404190 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         BPA   breed:TU|isolation source:lab|collection date:2017 01 13|geo loc name:China|tissue:embryos|age:32hpf|identified by:BPA 10 1 batchA|BioSampleModel:Invertebrate                 BPA batchA 0.1米收 1 5 5 embryo post 8 32hpf 0.1米收 BPA exposure replication 1     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     BPA-batch1-0.1-1.gz fastq 61360908.0 585502.0 BPA batchA 0.1 1.gz 0:104.80 A:14340320;C:16321670;G:16194989;T:14503929;N:0 104       14340320 16321670 16194989 14503929 0 SRX3058318 SRS2404190 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.96519   0.0002   0.97074   0.48732   45   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
43005 43005 SRR5892620 SRX3058317 SRS2404190 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         BPA   breed:TU|isolation source:lab|collection date:2017 01 13|geo loc name:China|tissue:embryos|age:32hpf|identified by:BPA 10 1 batchA|BioSampleModel:Invertebrate                 BPA batchA 0.01米收 8 8 embryo post 8 32hpf 0.01米收 BPA exposure     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     BPA-batch1-0.01.gz fastq 65748354.0 627138.0 BPA batchA 0.01.gz 0:104.84 A:15364594;C:17538856;G:17342236;T:15502668;N:0 104       15364594 17538856 17342236 15502668 0 SRX3058317 SRS2404190 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.9598   0.00022   0.97112   0.44717   138   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
43006 43006 SRR5892621 SRX3058316 SRS2404190 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         BPA   breed:TU|isolation source:lab|collection date:2017 01 13|geo loc name:China|tissue:embryos|age:32hpf|identified by:BPA 10 1 batchA|BioSampleModel:Invertebrate                 BPA batchA 0.1米收 3 7 7 embryo post 8 32hpf 0.1米收 BPA exposure replication 3     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     BPA-batch1-0.1-3.gz fastq 266147560.0 2552789.0 BPA batchA 0.1 3.gz 0:104.26 A:62870702;C:70586109;G:69904862;T:62785887;N:0 104       62870702 70586109 69904862 62785887 0 SRX3058316 SRS2404190 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.96039   0.00038   0.97096   0.45805   99   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
43007 43007 SRR5892622 SRX3058315 SRS2404189 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         DMSO   breed:TU|isolation source:lab|collection date:2016 11 07|geo loc name:China|tissue:embryos|age:32hpf|identified by:DMSO 1 batchA|BioSampleModel:Invertebrate                 DMSO batchC 3 69 69 embryo post 8 32hpf solvent control exposurereplication 3 in third batch     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     DMSO-batch3-3.gz fastq 229568543.0 2215642.0 DMSO batchC 3.gz 0:103.61 A:54491696;C:60494539;G:60307399;T:54274909;N:0 103       54491696 60494539 60307399 54274909 0 SRX3058315 SRS2404189 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.96381   0.00039   0.96909   0.46232   99   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
43008 43008 SRR5892623 SRX3058314 SRS2404190 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         BPA   breed:TU|isolation source:lab|collection date:2017 01 13|geo loc name:China|tissue:embryos|age:32hpf|identified by:BPA 10 1 batchA|BioSampleModel:Invertebrate                 BPA batchA 0.001米收 9 9 embryo post 8 32hpf 0.001米收 BPA exposure     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     BPA-batch1-0.001.gz fastq 107342639.0 1011191.0 BPA batchA 0.001.gz 0:106.15 A:25243607;C:28560404;G:28259900;T:25278728;N:0 106       25243607 28560404 28259900 25278728 0 SRX3058314 SRS2404190 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.95157   0.00018   0.97015   0.47508   97   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
43009 43009 SRR5892624 SRX3058313 SRS2404189 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         DMSO   breed:TU|isolation source:lab|collection date:2016 11 07|geo loc name:China|tissue:embryos|age:32hpf|identified by:DMSO 1 batchA|BioSampleModel:Invertebrate                 DMSO batchF 1 76 76 embryo post 8 32hpf solvent control exposurereplication 1 in sixth batch     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     DMSO-batch6-1.gz fastq 122524364.0 1140373.0 DMSO batchF 1.gz 0:107.44 A:29037400;C:32463628;G:32002009;T:29021327;N:0 107       29037400 32463628 32002009 29021327 0 SRX3058313 SRS2404189 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.93726   0.00028   0.96958   0.45888   94   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
43010 43010 SRR5892625 SRX3058312 SRS2404189 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         DMSO   breed:TU|isolation source:lab|collection date:2016 11 07|geo loc name:China|tissue:embryos|age:32hpf|identified by:DMSO 1 batchA|BioSampleModel:Invertebrate                 DMSO batchD 1 70 70 embryo post 8 32hpf solvent control exposurereplication 1 in forth batch     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     DMSO-batch4-1.gz fastq 74926719.0 693447.0 DMSO batchD 1.gz 0:108.05 A:17822945;C:19685470;G:19609716;T:17808588;N:0 108       17822945 19685470 19609716 17808588 0 SRX3058312 SRS2404189 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.93205   0.00032   0.97027   0.46463   90   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
43011 43011 SRR5892626 SRX3058311 SRS2404192 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         Eff2   breed:TU|isolation source:lab|collection date:2017 01 27|geo loc name:China|tissue:embryos|age:32hpf|identified by:Eff2 REF DMSO 2|BioSampleModel:Invertebrate                 Eff2 DMSO 2 29 29 solvent control for Eff2 treatments replication 2     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     Eff2-DMSO-2.gz fastq 130173677.0 1276939.0 Eff2 DMSO 2.gz 0:101.94 A:30800656;C:34461237;G:34302175;T:30609609;N:0 101       30800656 34461237 34302175 30609609 0 SRX3058311 SRS2404192 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.97312   0.00044   0.97102   0.46785   89   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
43012 43012 SRR5892627 SRX3058310 SRS2404192 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         Eff2   breed:TU|isolation source:lab|collection date:2017 01 27|geo loc name:China|tissue:embryos|age:32hpf|identified by:Eff2 REF DMSO 2|BioSampleModel:Invertebrate                 Eff2 DMSO 3 30 30 solvent control for Eff2 treatments replication 3     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     Eff2-DMSO-3.gz fastq 98823789.0 964906.0 Eff2 DMSO 3.gz 0:102.42 A:23307320;C:26100823;G:25991325;T:23424321;N:0 102       23307320 26100823 25991325 23424321 0 SRX3058310 SRS2404192 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.97592   0.00057   0.96976   0.47719   219   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
43013 43013 SRR5892628 SRX3058309 SRS2404190 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         BPA   breed:TU|isolation source:lab|collection date:2017 01 13|geo loc name:China|tissue:embryos|age:32hpf|identified by:BPA 10 1 batchA|BioSampleModel:Invertebrate                 BPA batchA 0.0001米收 10 10 embryo post 8 32hpf 0.0001米收 BPA exposure     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     BPA-batch1-0.0001.gz fastq 268069933.0 2570083.0 BPA batchA 0.0001.gz 0:104.30 A:62964064;C:71208232;G:70632425;T:63265212;N:0 104       62964064 71208232 70632425 63265212 0 SRX3058309 SRS2404190 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.95821   0.00028   0.97019   0.45389   55   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
43014 43014 SRR5892629 SRX3058308 SRS2404192 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         Eff2   breed:TU|isolation source:lab|collection date:2017 01 27|geo loc name:China|tissue:embryos|age:32hpf|identified by:Eff2 REF DMSO 2|BioSampleModel:Invertebrate                 Eff2 REF0.4 23 23 embryo post 8 32hpf 0.4 REF Eff2 exposure     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     Eff2-REF0.4.gz fastq 116602334.0 1111951.0 Eff2 REF0.4.gz 0:104.86 A:27578342;C:31122143;G:30463869;T:27437980;N:0 104       27578342 31122143 30463869 27437980 0 SRX3058308 SRS2404192 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.96298   0.00032   0.97086   0.47066   99   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
43015 43015 SRR5892630 SRX3058307 SRS2404192 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         Eff2   breed:TU|isolation source:lab|collection date:2017 01 27|geo loc name:China|tissue:embryos|age:32hpf|identified by:Eff2 REF DMSO 2|BioSampleModel:Invertebrate                 Eff2 REF0.08 24 24 embryo post 8 32hpf 0.08 REF Eff2 exposure     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     Eff2-REF0.08.gz fastq 117257335.0 1135362.0 Eff2 REF0.08.gz 0:103.28 A:27762486;C:30779147;G:30926101;T:27789601;N:0 103       27762486 30779147 30926101 27789601 0 SRX3058307 SRS2404192 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.96727   0.0003   0.97015   0.46445   99   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
43016 43016 SRR5892631 SRX3058306 SRS2404192 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         Eff2   breed:TU|isolation source:lab|collection date:2017 01 27|geo loc name:China|tissue:embryos|age:32hpf|identified by:Eff2 REF DMSO 2|BioSampleModel:Invertebrate                 Eff2 REF10 21 21 embryo post 8 32hpf 10 REF Eff2 exposure     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     Eff2-REF10.gz fastq 115465293.0 1111343.0 Eff2 REF10.gz 0:103.90 A:27473288;C:30244659;G:30506693;T:27240653;N:0 103       27473288 30244659 30506693 27240653 0 SRX3058306 SRS2404192 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.96992   0.00039   0.97051   0.47976   99   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
43017 43017 SRR5892632 SRX3058305 SRS2404192 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         Eff2   breed:TU|isolation source:lab|collection date:2017 01 27|geo loc name:China|tissue:embryos|age:32hpf|identified by:Eff2 REF DMSO 2|BioSampleModel:Invertebrate                 Eff2 REF2 22 22 embryo post 8 32hpf 2 REF Eff2 exposure     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     Eff2-REF2.gz fastq 120868058.0 1162567.0 Eff2 REF2.gz 0:103.97 A:28696636;C:32093659;G:31820629;T:28257134;N:0 103       28696636 32093659 31820629 28257134 0 SRX3058305 SRS2404192 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.97014   0.00042   0.97094   0.47389   182   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
43018 43018 SRR5892633 SRX3058304 SRS2404192 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         Eff2   breed:TU|isolation source:lab|collection date:2017 01 27|geo loc name:China|tissue:embryos|age:32hpf|identified by:Eff2 REF DMSO 2|BioSampleModel:Invertebrate                 Eff2 REF0.00064 27 27 embryo post 8 32hpf 0.00064 REF Eff2 exposure     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     Eff2-REF0.00064.gz fastq 139928274.0 1343610.0 Eff2 REF0.00064.gz 0:104.14 A:32900996;C:37559352;G:36386686;T:33081240;N:0 104       32900996 37559352 36386686 33081240 0 SRX3058304 SRS2404192 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.96704   0.00034   0.97068   0.46896   90   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
43019 43019 SRR5892634 SRX3058303 SRS2404192 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         Eff2   breed:TU|isolation source:lab|collection date:2017 01 27|geo loc name:China|tissue:embryos|age:32hpf|identified by:Eff2 REF DMSO 2|BioSampleModel:Invertebrate                 Eff2 DMSO 1 28 28 solvent control for Eff2 treatments replication 1     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     Eff2-DMSO-1.gz fastq 60761073.0 595809.0 Eff2 DMSO 1.gz 0:101.98 A:14285866;C:16118046;G:15995502;T:14361659;N:0 101       14285866 16118046 15995502 14361659 0 SRX3058303 SRS2404192 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.9804   0.00049   0.97053   0.45304   89   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
43020 43020 SRR5892635 SRX3058302 SRS2404192 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         Eff2   breed:TU|isolation source:lab|collection date:2017 01 27|geo loc name:China|tissue:embryos|age:32hpf|identified by:Eff2 REF DMSO 2|BioSampleModel:Invertebrate                 Eff2 REF0.016 25 25 embryo post 8 32hpf 0.016 REF Eff2 exposure     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     Eff2-REF0.016.gz fastq 150218876.0 1519616.0 Eff2 REF0.016.gz 0:98.85 A:35329654;C:39989538;G:39635993;T:35263691;N:0 98       35329654 39989538 39635993 35263691 0 SRX3058302 SRS2404192 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.978   0.00073   0.97116   0.45246   99   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
43021 43021 SRR5892636 SRX3058301 SRS2404192 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         Eff2   breed:TU|isolation source:lab|collection date:2017 01 27|geo loc name:China|tissue:embryos|age:32hpf|identified by:Eff2 REF DMSO 2|BioSampleModel:Invertebrate                 Eff2 REF0.0032 26 26 embryo post 8 32hpf 0.0032 REF Eff2 exposure     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     Eff2-REF0.0032.gz fastq 76364045.0 783876.0 Eff2 REF0.0032.gz 0:97.42 A:17887126;C:20254122;G:20251726;T:17971071;N:0 97       17887126 20254122 20251726 17971071 0 SRX3058301 SRS2404192 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.98075   0.00035   0.97153   0.42567   89   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
43022 43022 SRR5892637 SRX3058300 SRS2404193 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         DW   breed:TU|isolation source:lab|collection date:2017 01 27|geo loc name:China|tissue:embryos|age:32hpf|identified by:DW REF DMSO 3|BioSampleModel:Invertebrate                 DW DMSO 2 49 49 solvent control for DW treatments replication 2     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     DW-DMSO-2.gz fastq 98823789.0 964906.0 DW DMSO 2.gz 0:102.42 A:23307320;C:26100823;G:25991325;T:23424321;N:0 102       23307320 26100823 25991325 23424321 0 SRX3058300 SRS2404193 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.97592   0.00058   0.96974   0.47715   219   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
43023 43023 SRR5892638 SRX3058299 SRS2404193 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         DW   breed:TU|isolation source:lab|collection date:2017 01 27|geo loc name:China|tissue:embryos|age:32hpf|identified by:DW REF DMSO 3|BioSampleModel:Invertebrate                 DW DMSO 3 50 50 solvent control for DW treatments replication 3     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     DW-DMSO-3.gz fastq 98229102.0 950445.0 DW DMSO 3.gz 0:103.35 A:23324283;C:25872498;G:25849563;T:23182758;N:0 103       23324283 25872498 25849563 23182758 0 SRX3058299 SRS2404193 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.969   0.00029   0.97019   0.46904   89   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
43024 43024 SRR5892639 SRX3058298 SRS2404189 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         DMSO   breed:TU|isolation source:lab|collection date:2016 11 07|geo loc name:China|tissue:embryos|age:32hpf|identified by:DMSO 1 batchA|BioSampleModel:Invertebrate                 DMSO batchB 2 65 65 embryo post 8 32hpf solvent control exposurereplication 2 in second batch     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     DMSO-batch2-2.gz fastq 181332852.0 1769396.0 DMSO batchB 2.gz 0:102.48 A:43111149;C:47723124;G:47703716;T:42794863;N:0 102       43111149 47723124 47703716 42794863 0 SRX3058298 SRS2404189 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.96034   0.00047   0.96974   0.45533   196   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
43025 43025 SRR5892640 SRX3058297 SRS2404189 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         DMSO   breed:TU|isolation source:lab|collection date:2016 11 07|geo loc name:China|tissue:embryos|age:32hpf|identified by:DMSO 1 batchA|BioSampleModel:Invertebrate                 DMSO batchB 3 66 66 embryo post 8 32hpf solvent control exposurereplication 3 in second batch     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     DMSO-batch2-3.gz fastq 250009982.0 2396988.0 DMSO batchB 3.gz 0:104.30 A:59211578;C:66112203;G:65641188;T:59045013;N:0 104       59211578 66112203 65641188 59045013 0 SRX3058297 SRS2404189 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.95818   0.00057   0.96881   0.45554   99   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
43026 43026 SRR5892641 SRX3058296 SRS2404189 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         DMSO   breed:TU|isolation source:lab|collection date:2016 11 07|geo loc name:China|tissue:embryos|age:32hpf|identified by:DMSO 1 batchA|BioSampleModel:Invertebrate                 DMSO batchA 3 63 63 embryo post 8 32hpf solvent control exposurereplication 3 in first batch     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     DMSO-batch1-3.gz fastq 51761082.0 487084.0 DMSO batchA 3.gz 0:106.27 A:12262267;C:13621715;G:13587764;T:12289336;N:0 106       12262267 13621715 13587764 12289336 0 SRX3058296 SRS2404189 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.95092   0.0003   0.97017   0.46558   100   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
43027 43027 SRR5892642 SRX3058295 SRS2404189 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         DMSO   breed:TU|isolation source:lab|collection date:2016 11 07|geo loc name:China|tissue:embryos|age:32hpf|identified by:DMSO 1 batchA|BioSampleModel:Invertebrate                 DMSO batchB 1 64 64 embryo post 8 32hpf solvent control exposurereplication 1 in second batch     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     DMSO-batch2-1.gz fastq 137529705.0 1318658.0 DMSO batchB 1.gz 0:104.30 A:32525823;C:36223433;G:36304519;T:32475930;N:0 104       32525823 36223433 36304519 32475930 0 SRX3058295 SRS2404189 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.95767   0.00051   0.96978   0.45671   107   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
43028 43028 SRR5892643 SRX3058294 SRS2404189 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         DMSO   breed:TU|isolation source:lab|collection date:2016 11 07|geo loc name:China|tissue:embryos|age:32hpf|identified by:DMSO 1 batchA|BioSampleModel:Invertebrate                 DMSO batchA 1 61 61 embryo post 8 32hpf solvent control exposurereplication 1 in first batch     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     DMSO-batch1-1.gz fastq 54970926.0 518074.0 DMSO batchA 1.gz 0:106.11 A:13057581;C:14507897;G:14456016;T:12949432;N:0 106       13057581 14507897 14456016 12949432 0 SRX3058294 SRS2404189 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.94528   0.00049   0.96932   0.46753   99   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
43029 43029 SRR5892644 SRX3058293 SRS2404189 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         DMSO   breed:TU|isolation source:lab|collection date:2016 11 07|geo loc name:China|tissue:embryos|age:32hpf|identified by:DMSO 1 batchA|BioSampleModel:Invertebrate                 DMSO batchA 2 62 62 embryo post 8 32hpf solvent control exposurereplication 2 in first batch     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     DMSO-batch1-2.gz fastq 255347833.0 2401083.0 DMSO batchA 2.gz 0:106.35 A:61082865;C:67174427;G:66429786;T:60660755;N:0 106       61082865 67174427 66429786 60660755 0 SRX3058293 SRS2404189 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.93642   0.0006   0.96907   0.4557   100   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
43030 43030 SRR5892645 SRX3058292 SRS2404193 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         DW   breed:TU|isolation source:lab|collection date:2017 01 27|geo loc name:China|tissue:embryos|age:32hpf|identified by:DW REF DMSO 3|BioSampleModel:Invertebrate                 DW REF10 41 41 embryo post 8 32hpf 10 REF DW exposure     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     DW-REF10.gz fastq 85962034.0 853378.0 DW REF10.gz 0:100.73 A:20224728;C:22751213;G:22796892;T:20189201;N:0 100       20224728 22751213 22796892 20189201 0 SRX3058292 SRS2404193 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.97882   0.00028   0.97139   0.45221   98   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
43031 43031 SRR5892646 SRX3058291 SRS2404193 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         DW   breed:TU|isolation source:lab|collection date:2017 01 27|geo loc name:China|tissue:embryos|age:32hpf|identified by:DW REF DMSO 3|BioSampleModel:Invertebrate                 DW REF2 42 42 embryo post 8 32hpf 2 REF DW exposure     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     DW-REF2.gz fastq 123528031.0 1205821.0 DW REF2.gz 0:102.44 A:29195124;C:32436853;G:32741612;T:29154442;N:0 102       29195124 32436853 32741612 29154442 0 SRX3058291 SRS2404193 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.97597   0.00026   0.97122   0.42951   98   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
43032 43032 SRR5892647 SRX3058290 SRS2404193 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         DW   breed:TU|isolation source:lab|collection date:2017 01 27|geo loc name:China|tissue:embryos|age:32hpf|identified by:DW REF DMSO 3|BioSampleModel:Invertebrate                 DW REF0.4 43 43 embryo post 8 32hpf 0.4 REF DW exposure     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     DW-REF0.4.gz fastq 80805211.0 808689.0 DW REF0.4.gz 0:99.92 A:19124436;C:21362077;G:21221521;T:19097177;N:0 99       19124436 21362077 21221521 19097177 0 SRX3058290 SRS2404193 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.98077   0.00032   0.97155   0.45004   99   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
43033 43033 SRR5892648 SRX3058289 SRS2404193 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         DW   breed:TU|isolation source:lab|collection date:2017 01 27|geo loc name:China|tissue:embryos|age:32hpf|identified by:DW REF DMSO 3|BioSampleModel:Invertebrate                 DW REF0.08 44 44 embryo post 8 32hpf 0.08 REF DW exposure     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     DW-REF0.08.gz fastq 156227049.0 1483136.0 DW REF0.08.gz 0:105.34 A:37000695;C:41020030;G:41437003;T:36769321;N:0 105       37000695 41020030 41437003 36769321 0 SRX3058289 SRS2404193 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.96659   0.00039   0.97021   0.46998   98   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
43034 43034 SRR5892649 SRX3058288 SRS2404193 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         DW   breed:TU|isolation source:lab|collection date:2017 01 27|geo loc name:China|tissue:embryos|age:32hpf|identified by:DW REF DMSO 3|BioSampleModel:Invertebrate                 DW REF0.016 45 45 embryo post 8 32hpf 0.016 REF DW exposure     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     DW-REF0.016.gz fastq 105525902.0 1024760.0 DW REF0.016.gz 0:102.98 A:25009705;C:27915527;G:27638170;T:24962500;N:0 102       25009705 27915527 27638170 24962500 0 SRX3058288 SRS2404193 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.96884   0.00033   0.97064   0.44689   99   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
43035 43035 SRR5892650 SRX3058287 SRS2404193 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         DW   breed:TU|isolation source:lab|collection date:2017 01 27|geo loc name:China|tissue:embryos|age:32hpf|identified by:DW REF DMSO 3|BioSampleModel:Invertebrate                 DW REF0.0032 46 46 embryo post 8 32hpf 0.0032 REF DW exposure     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     DW-REF0.0032.gz fastq 91320121.0 896375.0 DW REF0.0032.gz 0:101.88 A:21749749;C:24046891;G:24076896;T:21446585;N:0 101       21749749 24046891 24076896 21446585 0 SRX3058287 SRS2404193 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.97536   0.00041   0.97055   0.45883   99   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
43036 43036 SRR5892651 SRX3058286 SRS2404193 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         DW   breed:TU|isolation source:lab|collection date:2017 01 27|geo loc name:China|tissue:embryos|age:32hpf|identified by:DW REF DMSO 3|BioSampleModel:Invertebrate                 DW REF0.00064 47 47 embryo post 8 32hpf 0.00064 REF DW exposure     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     DW-REF0.00064.gz fastq 79860974.0 769951.0 DW REF0.00064.gz 0:103.72 A:18763494;C:21304233;G:20873577;T:18919670;N:0 103       18763494 21304233 20873577 18919670 0 SRX3058286 SRS2404193 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.97247   0.00027   0.97061   0.47429   89   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
43037 43037 SRR5892652 SRX3058285 SRS2404193 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         DW   breed:TU|isolation source:lab|collection date:2017 01 27|geo loc name:China|tissue:embryos|age:32hpf|identified by:DW REF DMSO 3|BioSampleModel:Invertebrate                 DW DMSO 1 48 48 solvent control for DW treatments replication 1     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     DW-DMSO-1.gz fastq 111066881.0 1069114.0 DW DMSO 1.gz 0:103.89 A:26048176;C:29494944;G:29306560;T:26217201;N:0 103       26048176 29494944 29306560 26217201 0 SRX3058285 SRS2404193 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.9685   0.00024   0.97023   0.45888   99   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
43038 43038 SRR5892653 SRX3058284 SRS2404191 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         RW   breed:TU|isolation source:lab|collection date:2017 01 27|geo loc name:China|tissue:embryos|age:32hpf|identified by:RW REF10|BioSampleModel:Invertebrate                 RW DMSO 3 60 60 solvent control for RW treatments replication 3     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     RW-DMSO-3.gz fastq 79645000.0 756954.0 RW DMSO 3.gz 0:105.22 A:18824017;C:21139617;G:20908469;T:18772897;N:0 105       18824017 21139617 20908469 18772897 0 SRX3058284 SRS2404191 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.96764   0.00028   0.9708   0.46913   31   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
43039 43039 SRR5892654 SRX3058283 SRS2404189 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         DMSO   breed:TU|isolation source:lab|collection date:2016 11 07|geo loc name:China|tissue:embryos|age:32hpf|identified by:DMSO 1 batchA|BioSampleModel:Invertebrate                 DMSO batchC 1 67 67 embryo post 8 32hpf solvent control exposurereplication 1 in third batch     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     DMSO-batch3-1.gz fastq 148237805.0 1464542.0 DMSO batchC 1.gz 0:101.22 A:34729919;C:39397602;G:39251519;T:34858765;N:0 101       34729919 39397602 39251519 34858765 0 SRX3058283 SRS2404189 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.97193   0.00055   0.97084   0.44877   99   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
43040 43040 SRR5892655 SRX3058282 SRS2404191 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         RW   breed:TU|isolation source:lab|collection date:2017 01 27|geo loc name:China|tissue:embryos|age:32hpf|identified by:RW REF10|BioSampleModel:Invertebrate                 RW DMSO 2 59 59 solvent control for RW treatments replication 2     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     RW-DMSO-2.gz fastq 88506918.0 858326.0 RW DMSO 2.gz 0:103.12 A:20894323;C:23386921;G:23376653;T:20849021;N:0 103       20894323 23386921 23376653 20849021 0 SRX3058282 SRS2404191 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.97107   0.00042   0.97017   0.45197   82   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
43041 43041 SRR5892656 SRX3058281 SRS2404189 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         DMSO   breed:TU|isolation source:lab|collection date:2016 11 07|geo loc name:China|tissue:embryos|age:32hpf|identified by:DMSO 1 batchA|BioSampleModel:Invertebrate                 DMSO batchC 2 68 68 embryo post 8 32hpf solvent control exposurereplication 2 in third batch     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     DMSO-batch3-2.gz fastq 120223045.0 1183014.0 DMSO batchC 2.gz 0:101.62 A:28439501;C:31776286;G:31624483;T:28382775;N:0 101       28439501 31776286 31624483 28382775 0 SRX3058281 SRS2404189 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.97113   0.00052   0.96842   0.44542   77   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
43042 43042 SRR5892657 SRX3058280 SRS2404189 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         DMSO   breed:TU|isolation source:lab|collection date:2016 11 07|geo loc name:China|tissue:embryos|age:32hpf|identified by:DMSO 1 batchA|BioSampleModel:Invertebrate                 DMSO batchE 2 74 74 embryo post 8 32hpf solvent control exposurereplication 2 in fifth batch     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     DMSO-batch5-2.gz fastq 216569450.0 2036565.0 DMSO batchE 2.gz 0:106.34 A:51035409;C:56995676;G:56813634;T:51724731;N:0 106       51035409 56995676 56813634 51724731 0 SRX3058280 SRS2404189 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.94948   0.0003   0.96796   0.45419   90   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
43043 43043 SRR5892658 SRX3058279 SRS2404189 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         DMSO   breed:TU|isolation source:lab|collection date:2016 11 07|geo loc name:China|tissue:embryos|age:32hpf|identified by:DMSO 1 batchA|BioSampleModel:Invertebrate                 DMSO batchF 2 77 77 embryo post 8 32hpf solvent control exposurereplication 2 in sixth batch     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     DMSO-batch6-2.gz fastq 60571052.0 576600.0 DMSO batchF 2.gz 0:105.05 A:14291716;C:16022096;G:15996802;T:14260438;N:0 105       14291716 16022096 15996802 14260438 0 SRX3058279 SRS2404189 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.96382   0.00025   0.97066   0.47343   98   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
43044 43044 SRR5892659 SRX3058278 SRS2404189 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         DMSO   breed:TU|isolation source:lab|collection date:2016 11 07|geo loc name:China|tissue:embryos|age:32hpf|identified by:DMSO 1 batchA|BioSampleModel:Invertebrate                 DMSO batchF 3 78 78 embryo post 8 32hpf solvent control exposurereplication 3 in sixth batch     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     DMSO-batch6-3.gz fastq 62914420.0 598585.0 DMSO batchF 3.gz 0:105.11 A:14828390;C:16725889;G:16466687;T:14893454;N:0 105       14828390 16725889 16466687 14893454 0 SRX3058278 SRS2404189 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.96741   0.00059   0.96688   0.46367   89   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
43045 43045 SRR5892660 SRX3058277 SRS2404189 SRP114766 PRJNA396480 Danio rerio Raw sequence reads PRJNA396480 Other A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test         DMSO   breed:TU|isolation source:lab|collection date:2016 11 07|geo loc name:China|tissue:embryos|age:32hpf|identified by:DMSO 1 batchA|BioSampleModel:Invertebrate                 DMSO batchD 3 72 72 embryo post 8 32hpf solvent control exposurereplication 3 in forth batch     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP114766     DMSO-batch4-3.gz fastq 108350894.0 993395.0 DMSO batchD 3.gz 0:109.07 A:25455150;C:28656068;G:28399753;T:25839923;N:0 109       25455150 28656068 28399753 25839923 0 SRX3058277 SRS2404189 SRA595054 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.93055   0.00029   0.97041   0.44294   99   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2017-08-03 Pharyngula Embryo Embryo Imprecise All anatomical structures
48726 48726 SRR7789580 SRX4644423 SRS3742493 SRP159670 PRJNA475635 Tris1 3 dichloro 2 propyl phosphate Exposure During Early Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis PRJNA475635 Other The objective of this project was to rely on mRNA sequencing and amplicon sequencing to test the hypothesis that tris1 3 dichloro 2 propyl phosphate TDCIPP interferes with pathways involved in early zebrafish embryogenesis.         TDCIPP 12hpf 3 S18   strain:5D|isolate:108|dev stage:12 hpf|sex:not applicable|tissue:embryo|BioSampleModel:Model organism or animal                 TDCIPP 12hpf 3 S18 TDCIPP 12hpf 3 S18 TDCIPP 12hpf 3 S18 Nextera XT DNA Library Prep kit     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiniSeq   SRP159670     TDCIPP-12hpf-3_S18_L001_R2_001.fastq.gz TDCIPP-12hpf-3_S18_L001_R1_001.fastq.gz fastq fastq 103340472.0 472844.0 TDCIPP 12hpf 3 S18 L001 R1 001.fastq.gz 0:109.23 1:109.32 A:26737838;C:24795090;G:24934613;T:26529096;N:343835 109 109     26737838 24795090 24934613 26529096 343835 SRX4644423 SRS3742493 SRA767209 University of California, Riverside|Environmental Sciences University of California, Riverside 2 0.95154 0.95221 0.00019 0.00019 0.99922 0.99924 0.41074 0.41244 121 121 B B biological fallback assumption illumina miseq unknown random_priming nextera bulk unknown unknown   United States 2018-09-05 Segmentation Embryo Embryo Imprecise All anatomical structures
48727 48727 SRR7789581 SRX4644422 SRS3742492 SRP159670 PRJNA475635 Tris1 3 dichloro 2 propyl phosphate Exposure During Early Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis PRJNA475635 Other The objective of this project was to rely on mRNA sequencing and amplicon sequencing to test the hypothesis that tris1 3 dichloro 2 propyl phosphate TDCIPP interferes with pathways involved in early zebrafish embryogenesis.         TDCIPP 12hpf 2 S17   strain:5D|isolate:107|dev stage:12 hpf|sex:not applicable|tissue:embryo|BioSampleModel:Model organism or animal                 TDCIPP 12hpf 2 S17 TDCIPP 12hpf 2 S17 TDCIPP 12hpf 2 S17 Nextera XT DNA Library Prep kit     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiniSeq   SRP159670     TDCIPP-12hpf-2_S17_L001_R1_001.fastq.gz TDCIPP-12hpf-2_S17_L001_R2_001.fastq.gz fastq fastq 127382315.0 575073.0 TDCIPP 12hpf 2 S17 L001 R1 001.fastq.gz 0:110.70 1:110.81 A:32604644;C:30882861;G:31076792;T:32385804;N:432214 110 110     32604644 30882861 31076792 32385804 432214 SRX4644422 SRS3742492 SRA767209 University of California, Riverside|Environmental Sciences University of California, Riverside 2 0.94383 0.94386 0.00021 0.00022 0.99926 0.99926 0.41023 0.38711 151 151 B B biological fallback assumption illumina miseq unknown random_priming nextera bulk unknown unknown   United States 2018-09-05 Segmentation Embryo Embryo Imprecise All anatomical structures
48728 48728 SRR7789582 SRX4644421 SRS3742490 SRP159670 PRJNA475635 Tris1 3 dichloro 2 propyl phosphate Exposure During Early Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis PRJNA475635 Other The objective of this project was to rely on mRNA sequencing and amplicon sequencing to test the hypothesis that tris1 3 dichloro 2 propyl phosphate TDCIPP interferes with pathways involved in early zebrafish embryogenesis.         TDCIPP 12hpf 1 S16   strain:5D|isolate:106|dev stage:12 hpf|sex:not applicable|tissue:embryo|BioSampleModel:Model organism or animal                 TDCIPP 12hpf 1 S16 TDCIPP 12hpf 1 S16 TDCIPP 12hpf 1 S16 Nextera XT DNA Library Prep kit     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiniSeq   SRP159670     TDCIPP-12hpf-1_S16_L001_R1_001.fastq.gz TDCIPP-12hpf-1_S16_L001_R2_001.fastq.gz fastq fastq 106771425.0 482515.0 TDCIPP 12hpf 1 S16 L001 R1 001.fastq.gz 0:110.59 1:110.69 A:27853264;C:25384933;G:25518809;T:27629968;N:384451 110 110     27853264 25384933 25518809 27629968 384451 SRX4644421 SRS3742490 SRA767209 University of California, Riverside|Environmental Sciences University of California, Riverside 2 0.95913 0.95873 0.00021 0.00025 0.99928 0.99928 0.4122 0.39928 79 79 B B biological fallback assumption illumina miseq unknown random_priming nextera bulk unknown unknown   United States 2018-09-05 Segmentation Embryo Embryo Imprecise All anatomical structures
48729 48729 SRR7789583 SRX4644420 SRS3742491 SRP159670 PRJNA475635 Tris1 3 dichloro 2 propyl phosphate Exposure During Early Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis PRJNA475635 Other The objective of this project was to rely on mRNA sequencing and amplicon sequencing to test the hypothesis that tris1 3 dichloro 2 propyl phosphate TDCIPP interferes with pathways involved in early zebrafish embryogenesis.         DMSO 12hpf 3 S9x   strain:5D|isolate:105|dev stage:12 hpf|sex:not applicable|tissue:embryo|BioSampleModel:Model organism or animal                 DMSO 12hpf 3 S9x DMSO 12hpf 3 S9x DMSO 12hpf 3 S9x Nextera XT DNA Library Prep kit     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiniSeq   SRP159670     DMSO-12hpf-3_S9x_L001_R2_001.fastq.gz DMSO-12hpf-3_S9x_L001_R1_001.fastq.gz fastq fastq 106526213.0 483892.0 DMSO 12hpf 3 S9x L001 R2 001.fastq.gz 0:110.00 1:110.14 A:27523846;C:25609135;G:25786277;T:27228622;N:378333 110 110     27523846 25609135 25786277 27228622 378333 SRX4644420 SRS3742491 SRA767209 University of California, Riverside|Environmental Sciences University of California, Riverside 2 0.95736 0.95668 0.00013 0.00011 0.99924 0.99926 0.45348 0.45617 77 77 B B biological fallback assumption illumina miseq unknown random_priming nextera bulk unknown unknown   United States 2018-09-05 Segmentation Embryo Embryo Imprecise All anatomical structures
48730 48730 SRR7789584 SRX4644419 SRS3742489 SRP159670 PRJNA475635 Tris1 3 dichloro 2 propyl phosphate Exposure During Early Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis PRJNA475635 Other The objective of this project was to rely on mRNA sequencing and amplicon sequencing to test the hypothesis that tris1 3 dichloro 2 propyl phosphate TDCIPP interferes with pathways involved in early zebrafish embryogenesis.         DMSO 12hpf 2 S8   strain:5D|isolate:104|dev stage:12 hpf|sex:not applicable|tissue:embryo|BioSampleModel:Model organism or animal                 DMSO 12hpf 2 S8 DMSO 12hpf 2 S8 DMSO 12hpf 2 S8 Nextera XT DNA Library Prep kit     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiniSeq   SRP159670     DMSO-12hpf-2_S8_L001_R1_001.fastq.gz DMSO-12hpf-2_S8_L001_R2_001.fastq.gz fastq fastq 126754105.0 599652.0 DMSO 12hpf 2 S8 L001 R1 001.fastq.gz 0:105.62 1:105.76 A:32875248;C:30352965;G:30543115;T:32575671;N:407106 105 105     32875248 30352965 30543115 32575671 407106 SRX4644419 SRS3742489 SRA767209 University of California, Riverside|Environmental Sciences University of California, Riverside 2 0.9631 0.96229 0.00019 0.00019 0.99928 0.99928 0.45939 0.44598 92 92 B B biological fallback assumption illumina miseq unknown random_priming nextera bulk unknown unknown   United States 2018-09-05 Segmentation Embryo Embryo Imprecise All anatomical structures
48731 48731 SRR7789585 SRX4644418 SRS3742488 SRP159670 PRJNA475635 Tris1 3 dichloro 2 propyl phosphate Exposure During Early Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis PRJNA475635 Other The objective of this project was to rely on mRNA sequencing and amplicon sequencing to test the hypothesis that tris1 3 dichloro 2 propyl phosphate TDCIPP interferes with pathways involved in early zebrafish embryogenesis.         DMSO 12hpf 1 S7   strain:5D|isolate:103|dev stage:12 hpf|sex:not applicable|tissue:embryo|BioSampleModel:Model organism or animal                 DMSO 12hpf 1 S7 DMSO 12hpf 1 S7 DMSO 12hpf 1 S7 Nextera XT DNA Library Prep kit     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiniSeq   SRP159670     DMSO-12hpf-1_S7_L001_R2_001.fastq.gz DMSO-12hpf-1_S7_L001_R1_001.fastq.gz fastq fastq 133973234.0 626692.0 DMSO 12hpf 1 S7 L001 R1 001.fastq.gz 0:106.86 1:106.92 A:34741794;C:32048895;G:32233963;T:34368689;N:579893 106 106     34741794 32048895 32233963 34368689 579893 SRX4644418 SRS3742488 SRA767209 University of California, Riverside|Environmental Sciences University of California, Riverside 2 0.961 0.9606 0.0002 0.00021 0.99928 0.99928 0.47357 0.45763 74 74 B B biological fallback assumption illumina miseq unknown random_priming nextera bulk unknown unknown   United States 2018-09-05 Segmentation Embryo Embryo Imprecise All anatomical structures
48732 48732 SRR7789586 SRX4644417 SRS3742487 SRP159670 PRJNA475635 Tris1 3 dichloro 2 propyl phosphate Exposure During Early Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis PRJNA475635 Other The objective of this project was to rely on mRNA sequencing and amplicon sequencing to test the hypothesis that tris1 3 dichloro 2 propyl phosphate TDCIPP interferes with pathways involved in early zebrafish embryogenesis.         TDCIPP 6hpf 5 S15   strain:5D|isolate:102|dev stage:6 hpf|sex:not applicable|tissue:embryo|BioSampleModel:Model organism or animal                 TDCIPP 6hpf 5 S15 TDCIPP 6hpf 5 S15 TDCIPP 6hpf 5 S15 Nextera XT DNA Library Prep kit     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiniSeq   SRP159670     TDCIPP-6hpf-5_S15_L001_R1_001.fastq.gz TDCIPP-6hpf-5_S15_L001_R2_001.fastq.gz fastq fastq 103436592.0 515633.0 TDCIPP 6hpf 5 S15 L001 R2 001.fastq.gz 0:100.23 1:100.37 A:26213221;C:25393681;G:25395332;T:25877353;N:557005 100 100     26213221 25393681 25395332 25877353 557005 SRX4644417 SRS3742487 SRA767209 University of California, Riverside|Environmental Sciences University of California, Riverside 2 0.9545 0.9544 0.00043 0.0004 0.99898 0.99904 0.33908 0.3596 64 151 B B biological fallback assumption illumina miseq unknown random_priming nextera bulk unknown unknown   United States 2018-09-05 Gastrula Embryo Embryo Imprecise All anatomical structures
48733 48733 SRR7789587 SRX4644416 SRS3742486 SRP159670 PRJNA475635 Tris1 3 dichloro 2 propyl phosphate Exposure During Early Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis PRJNA475635 Other The objective of this project was to rely on mRNA sequencing and amplicon sequencing to test the hypothesis that tris1 3 dichloro 2 propyl phosphate TDCIPP interferes with pathways involved in early zebrafish embryogenesis.         TDCIPP 6hpf 3 S14   strain:5D|isolate:101|dev stage:6 hpf|sex:not applicable|tissue:embryo|BioSampleModel:Model organism or animal                 TDCIPP 6hpf 3 S14 TDCIPP 6hpf 3 S14 TDCIPP 6hpf 3 S14 Nextera XT DNA Library Prep kit     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiniSeq   SRP159670     TDCIPP-6hpf-3_S14_L001_R1_001.fastq.gz TDCIPP-6hpf-3_S14_L001_R2_001.fastq.gz fastq fastq 99767681.0 500238.0 TDCIPP 6hpf 3 S14 L001 R2 001.fastq.gz 0:99.64 1:99.80 A:25255312;C:24464400;G:24481390;T:25002218;N:564361 99 99     25255312 24464400 24481390 25002218 564361 SRX4644416 SRS3742486 SRA767209 University of California, Riverside|Environmental Sciences University of California, Riverside 2 0.96117 0.96052 0.00028 0.00028 0.99924 0.99922 0.35418 0.35375 148 149 B B biological fallback assumption illumina miseq unknown random_priming nextera bulk unknown unknown   United States 2018-09-05 Gastrula Embryo Embryo Imprecise All anatomical structures
48752 48752 SRR7789606 SRX4644397 SRS3742467 SRP159670 PRJNA475635 Tris1 3 dichloro 2 propyl phosphate Exposure During Early Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis PRJNA475635 Other The objective of this project was to rely on mRNA sequencing and amplicon sequencing to test the hypothesis that tris1 3 dichloro 2 propyl phosphate TDCIPP interferes with pathways involved in early zebrafish embryogenesis.         DMSO 6hpf 5 S6   strain:5D|isolate:99|dev stage:6 hpf|sex:not applicable|tissue:embryo|BioSampleModel:Model organism or animal                 DMSO 6hpf 5 S6 DMSO 6hpf 5 S6 DMSO 6hpf 5 S6 Nextera XT DNA Library Prep kit     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiniSeq   SRP159670     DMSO-6hpf-5_S6_L001_R1_001.fastq.gz DMSO-6hpf-5_S6_L001_R2_001.fastq.gz fastq fastq 107736291.0 525615.0 DMSO 6hpf 5 S6 L001 R2 001.fastq.gz 0:102.38 1:102.59 A:27251903;C:26520518;G:26567935;T:26878661;N:517274 102 102     27251903 26520518 26567935 26878661 517274 SRX4644397 SRS3742467 SRA767209 University of California, Riverside|Environmental Sciences University of California, Riverside 2 0.96019 0.95982 0.00045 0.00043 0.99918 0.99916 0.37174 0.3343 151 148 B B biological fallback assumption illumina miseq unknown random_priming nextera bulk unknown unknown   United States 2018-09-05 Gastrula Embryo Embryo Imprecise All anatomical structures
48753 48753 SRR7789607 SRX4644396 SRS3742466 SRP159670 PRJNA475635 Tris1 3 dichloro 2 propyl phosphate Exposure During Early Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis PRJNA475635 Other The objective of this project was to rely on mRNA sequencing and amplicon sequencing to test the hypothesis that tris1 3 dichloro 2 propyl phosphate TDCIPP interferes with pathways involved in early zebrafish embryogenesis.         TDCIPP 6hpf 1 S13   strain:5D|isolate:100|dev stage:6 hpf|sex:not applicable|tissue:embryo|BioSampleModel:Model organism or animal                 TDCIPP 6hpf 1 S13 TDCIPP 6hpf 1 S13 TDCIPP 6hpf 1 S13 Nextera XT DNA Library Prep kit     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiniSeq   SRP159670     TDCIPP-6hpf-1_S13_L001_R2_001.fastq.gz TDCIPP-6hpf-1_S13_L001_R1_001.fastq.gz fastq fastq 91271391.0 448917.0 TDCIPP 6hpf 1 S13 L001 R2 001.fastq.gz 0:101.61 1:101.71 A:23269221;C:22266290;G:22291849;T:22983659;N:460372 101 101     23269221 22266290 22291849 22983659 460372 SRX4644396 SRS3742466 SRA767209 University of California, Riverside|Environmental Sciences University of California, Riverside 2 0.96069 0.96135 0.0005 0.00051 0.99916 0.99916 0.34621 0.3774 76 76 B B biological fallback assumption illumina miseq unknown random_priming nextera bulk unknown unknown   United States 2018-09-05 Gastrula Embryo Embryo Imprecise All anatomical structures
48754 48754 SRR7789608 SRX4644395 SRS3742465 SRP159670 PRJNA475635 Tris1 3 dichloro 2 propyl phosphate Exposure During Early Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis PRJNA475635 Other The objective of this project was to rely on mRNA sequencing and amplicon sequencing to test the hypothesis that tris1 3 dichloro 2 propyl phosphate TDCIPP interferes with pathways involved in early zebrafish embryogenesis.         DMSO 3hpf 2 S1   strain:5D|isolate:91|dev stage:3 hpf|sex:not applicable|tissue:embryo|BioSampleModel:Model organism or animal                 DMSO 3hpf 2 S1 DMSO 3hpf 2 S1 DMSO 3hpf 2 S1 Nextera XT DNA Library Prep kit     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiniSeq   SRP159670     DMSO-3hpf-2_S1_L001_R1_001.fastq.gz DMSO-3hpf-2_S1_L001_R2_001.fastq.gz fastq fastq 143035914.0 673342.0 DMSO 3hpf 2 S1 L001 R2 001.fastq.gz 0:106.19 1:106.24 A:37104542;C:34199194;G:34286529;T:36802368;N:643281 106 106     37104542 34199194 34286529 36802368 643281 SRX4644395 SRS3742465 SRA767209 University of California, Riverside|Environmental Sciences University of California, Riverside 2 0.97329 0.97288 0.00018 0.00017 0.99931 0.99931 0.41042 0.4514 39 39 B B biological fallback assumption illumina miseq unknown random_priming nextera bulk unknown unknown   United States 2018-09-05 Blastula Embryo Embryo Imprecise All anatomical structures
48755 48755 SRR7789609 SRX4644394 SRS3742464 SRP159670 PRJNA475635 Tris1 3 dichloro 2 propyl phosphate Exposure During Early Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis PRJNA475635 Other The objective of this project was to rely on mRNA sequencing and amplicon sequencing to test the hypothesis that tris1 3 dichloro 2 propyl phosphate TDCIPP interferes with pathways involved in early zebrafish embryogenesis.         DMSO 3hpf 3 S2   strain:5D|isolate:92|dev stage:3 hpf|sex:not applicable|tissue:embryo|BioSampleModel:Model organism or animal                 DMSO 3hpf 3 S2 DMSO 3hpf 3 S2 DMSO 3hpf 3 S2 Nextera XT DNA Library Prep kit     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiniSeq   SRP159670     DMSO-3hpf-3_S2_L001_R2_001.fastq.gz DMSO-3hpf-3_S2_L001_R1_001.fastq.gz fastq fastq 121995763.0 560778.0 DMSO 3hpf 3 S2 L001 R2 001.fastq.gz 0:108.73 1:108.82 A:31569811;C:29316325;G:29402755;T:31346545;N:360327 108 108     31569811 29316325 29402755 31346545 360327 SRX4644394 SRS3742464 SRA767209 University of California, Riverside|Environmental Sciences University of California, Riverside 2 0.96945 0.96871 0.00029 0.00031 0.99924 0.99924 0.3498 0.37356 134 134 B B biological fallback assumption illumina miseq unknown random_priming nextera bulk unknown unknown   United States 2018-09-05 Blastula Embryo Embryo Imprecise All anatomical structures
48756 48756 SRR7789610 SRX4644393 SRS3742463 SRP159670 PRJNA475635 Tris1 3 dichloro 2 propyl phosphate Exposure During Early Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis PRJNA475635 Other The objective of this project was to rely on mRNA sequencing and amplicon sequencing to test the hypothesis that tris1 3 dichloro 2 propyl phosphate TDCIPP interferes with pathways involved in early zebrafish embryogenesis.         DMSO 3hpf 4 S3   strain:5D|isolate:93|dev stage:3 hpf|sex:not applicable|tissue:embryo|BioSampleModel:Model organism or animal                 DMSO 3hpf 4 S3 DMSO 3hpf 4 S3 DMSO 3hpf 4 S3 Nextera XT DNA Library Prep kit     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiniSeq   SRP159670     DMSO-3hpf-4_S3_L001_R1_001.fastq.gz DMSO-3hpf-4_S3_L001_R2_001.fastq.gz fastq fastq 131169421.0 625415.0 DMSO 3hpf 4 S3 L001 R2 001.fastq.gz 0:104.81 1:104.92 A:33973430;C:31403379;G:31490054;T:33651313;N:651245 104 104     33973430 31403379 31490054 33651313 651245 SRX4644393 SRS3742463 SRA767209 University of California, Riverside|Environmental Sciences University of California, Riverside 2 0.98214 0.98232 0.00039 0.00042 0.99931 0.99928 0.43853 0.43838 94 94 B B biological fallback assumption illumina miseq unknown random_priming nextera bulk unknown unknown   United States 2018-09-05 Blastula Embryo Embryo Imprecise All anatomical structures
48757 48757 SRR7789611 SRX4644392 SRS3742462 SRP159670 PRJNA475635 Tris1 3 dichloro 2 propyl phosphate Exposure During Early Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis PRJNA475635 Other The objective of this project was to rely on mRNA sequencing and amplicon sequencing to test the hypothesis that tris1 3 dichloro 2 propyl phosphate TDCIPP interferes with pathways involved in early zebrafish embryogenesis.         TDCIPP 3hpf 1 S10   strain:5D|isolate:94|dev stage:3 hpf|sex:not applicable|tissue:embryo|BioSampleModel:Model organism or animal                 TDCIPP 3hpf 1 S10 TDCIPP 3hpf 1 S10 TDCIPP 3hpf 1 S10 Nextera XT DNA Library Prep kit     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiniSeq   SRP159670     TDCIPP-3hpf-1_S10_L001_R2_001.fastq.gz TDCIPP-3hpf-1_S10_L001_R1_001.fastq.gz fastq fastq 142472001.0 675614.0 TDCIPP 3hpf 1 S10 L001 R2 001.fastq.gz 0:105.40 1:105.48 A:37237954;C:33780885;G:33866153;T:36894511;N:692498 105 105     37237954 33780885 33866153 36894511 692498 SRX4644392 SRS3742462 SRA767209 University of California, Riverside|Environmental Sciences University of California, Riverside 2 0.98448 0.98456 3e-05 5e-05 0.99928 0.99926 0.44535 0.45235 89 89 B B biological fallback assumption illumina miseq unknown random_priming nextera bulk unknown unknown   United States 2018-09-05 Blastula Embryo Embryo Imprecise All anatomical structures
48758 48758 SRR7789612 SRX4644391 SRS3742461 SRP159670 PRJNA475635 Tris1 3 dichloro 2 propyl phosphate Exposure During Early Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis PRJNA475635 Other The objective of this project was to rely on mRNA sequencing and amplicon sequencing to test the hypothesis that tris1 3 dichloro 2 propyl phosphate TDCIPP interferes with pathways involved in early zebrafish embryogenesis.         TDCIPP 3hpf 2 S11   strain:5D|isolate:95|dev stage:3 hpf|sex:not applicable|tissue:embryo|BioSampleModel:Model organism or animal                 TDCIPP 3hpf 2 S11 TDCIPP 3hpf 2 S11 TDCIPP 3hpf 2 S11 Nextera XT DNA Library Prep kit     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiniSeq   SRP159670     TDCIPP-3hpf-2_S11_L001_R1_001.fastq.gz TDCIPP-3hpf-2_S11_L001_R2_001.fastq.gz fastq fastq 135473127.0 649900.0 TDCIPP 3hpf 2 S11 L001 R2 001.fastq.gz 0:104.20 1:104.25 A:35005838;C:32424512;G:32538931;T:34827379;N:676467 104 104     35005838 32424512 32538931 34827379 676467 SRX4644391 SRS3742461 SRA767209 University of California, Riverside|Environmental Sciences University of California, Riverside 2 0.98266 0.98245 0.0 0.0 0.99933 0.99933 0.49436 0.49577 59 59 B B biological fallback assumption illumina miseq unknown random_priming nextera bulk unknown unknown   United States 2018-09-05 Blastula Embryo Embryo Imprecise All anatomical structures
48759 48759 SRR7789613 SRX4644390 SRS3742460 SRP159670 PRJNA475635 Tris1 3 dichloro 2 propyl phosphate Exposure During Early Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis PRJNA475635 Other The objective of this project was to rely on mRNA sequencing and amplicon sequencing to test the hypothesis that tris1 3 dichloro 2 propyl phosphate TDCIPP interferes with pathways involved in early zebrafish embryogenesis.         TDCIPP 3hpf 4 S12   strain:5D|isolate:96|dev stage:3 hpf|sex:not applicable|tissue:embryo|BioSampleModel:Model organism or animal                 TDCIPP 3hpf 4 S12 TDCIPP 3hpf 4 S12 TDCIPP 3hpf 4 S12 Nextera XT DNA Library Prep kit     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiniSeq   SRP159670     TDCIPP-3hpf-4_S12_L001_R1_001.fastq.gz TDCIPP-3hpf-4_S12_L001_R2_001.fastq.gz fastq fastq 126387362.0 600422.0 TDCIPP 3hpf 4 S12 L001 R1 001.fastq.gz 0:105.21 1:105.28 A:32731869;C:30187130;G:30351165;T:32470755;N:646443 105 105     32731869 30187130 30351165 32470755 646443 SRX4644390 SRS3742460 SRA767209 University of California, Riverside|Environmental Sciences University of California, Riverside 2 0.97915 0.97875 0.00012 0.00011 0.99933 0.99933 0.44431 0.44577 117 117 B B biological fallback assumption illumina miseq unknown random_priming nextera bulk unknown unknown   United States 2018-09-05 Blastula Embryo Embryo Imprecise All anatomical structures
48760 48760 SRR7789614 SRX4644389 SRS3742459 SRP159670 PRJNA475635 Tris1 3 dichloro 2 propyl phosphate Exposure During Early Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis PRJNA475635 Other The objective of this project was to rely on mRNA sequencing and amplicon sequencing to test the hypothesis that tris1 3 dichloro 2 propyl phosphate TDCIPP interferes with pathways involved in early zebrafish embryogenesis.         DMSO 6hpf 1 S4   strain:5D|isolate:97|dev stage:6 hpf|sex:not applicable|tissue:embryo|BioSampleModel:Model organism or animal                 DMSO 6hpf 1 S4 DMSO 6hpf 1 S4 DMSO 6hpf 1 S4 Nextera XT DNA Library Prep kit     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiniSeq   SRP159670     DMSO-6hpf-1_S4_L001_R2_001.fastq.gz DMSO-6hpf-1_S4_L001_R1_001.fastq.gz fastq fastq 95806388.0 464892.0 DMSO 6hpf 1 S4 L001 R2 001.fastq.gz 0:103.02 1:103.07 A:24562000;C:23294432;G:23307788;T:24218011;N:424157 103 103     24562000 23294432 23307788 24218011 424157 SRX4644389 SRS3742459 SRA767209 University of California, Riverside|Environmental Sciences University of California, Riverside 2 0.95656 0.95712 0.0004 0.00039 0.99918 0.99916 0.34071 0.34145 94 151 B B biological fallback assumption illumina miseq unknown random_priming nextera bulk unknown unknown   United States 2018-09-05 Gastrula Embryo Embryo Imprecise All anatomical structures
48761 48761 SRR7789615 SRX4644388 SRS3742458 SRP159670 PRJNA475635 Tris1 3 dichloro 2 propyl phosphate Exposure During Early Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis PRJNA475635 Other The objective of this project was to rely on mRNA sequencing and amplicon sequencing to test the hypothesis that tris1 3 dichloro 2 propyl phosphate TDCIPP interferes with pathways involved in early zebrafish embryogenesis.         DMSO 6hpf 3 S5   strain:5D|isolate:98|dev stage:6 hpf|sex:not applicable|tissue:embryo|BioSampleModel:Model organism or animal                 DMSO 6hpf 3 S5 DMSO 6hpf 3 S5 DMSO 6hpf 3 S5 Nextera XT DNA Library Prep kit     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiniSeq   SRP159670     DMSO-6hpf-3_S5_L001_R1_001.fastq.gz DMSO-6hpf-3_S5_L001_R2_001.fastq.gz fastq fastq 105210098.0 508250.0 DMSO 6hpf 3 S5 L001 R1 001.fastq.gz 0:103.44 1:103.57 A:26828273;C:25677269;G:25721655;T:26524232;N:458669 103 103     26828273 25677269 25721655 26524232 458669 SRX4644388 SRS3742458 SRA767209 University of California, Riverside|Environmental Sciences University of California, Riverside 2 0.95583 0.95513 0.00047 0.00045 0.99916 0.99918 0.30844 0.29023 42 42 B B biological fallback assumption illumina miseq unknown random_priming nextera bulk unknown unknown   United States 2018-09-05 Gastrula Embryo Embryo Imprecise All anatomical structures
49617 49617 SRR8002796 SRX4833752 SRS3900655 SRP165143 PRJNA495439 Danio rerio strain:TU Genome sequencing PRJNA495439 Whole Genome Sequencing To assessment mixture effects of zenrafish two mixtures and their twelve components were tested by reduced zebrfish transcriptome approach.         40# 7   breed:TU|dev stage:32hpf|sex:pooled male and female|tissue:embryo|identified by:BPF 7|BioSampleModel:Model organism or animal                 BbF 7 74 74 embryo post 8 32hpf post BbF exposure 0.0000007M     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP165143     40#-7.fastq.gz fastq 67688833.0 605806.0 40# 7.fastq.gz 0:111.73 A:16049163;C:17757038;G:17836872;T:16045760;N:0 111       16049163 17757038 17836872 16045760 0 SRX4833752 SRS3900655 SRA792561 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.92975   0.0002   0.97098   0.4822   174   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2018-10-11 Pharyngula Embryo Embryo Imprecise All anatomical structures
49618 49618 SRR8002797 SRX4833751 SRS3900654 SRP165143 PRJNA495439 Danio rerio strain:TU Genome sequencing PRJNA495439 Whole Genome Sequencing To assessment mixture effects of zenrafish two mixtures and their twelve components were tested by reduced zebrfish transcriptome approach.         40# 6   breed:TU|dev stage:32hpf|sex:pooled male and female|tissue:embryo|identified by:BPF 6|BioSampleModel:Model organism or animal                 BbF 6 73 73 embryo post 8 32hpf post BbF exposure 0.000007M     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP165143     40#-6.fastq.gz fastq 121243678.0 1111061.0 40# 6.fastq.gz 0:109.12 A:28691499;C:32061221;G:31744743;T:28746215;N:0 109       28691499 32061221 31744743 28746215 0 SRX4833751 SRS3900654 SRA792561 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.95605   0.00018   0.97049   0.47484   99   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2019-11-10 Pharyngula Embryo Embryo Imprecise All anatomical structures
49619 49619 SRR8002798 SRX4833750 SRS3900653 SRP165143 PRJNA495439 Danio rerio strain:TU Genome sequencing PRJNA495439 Whole Genome Sequencing To assessment mixture effects of zenrafish two mixtures and their twelve components were tested by reduced zebrfish transcriptome approach.         40# 5   breed:TU|dev stage:32hpf|sex:pooled male and female|tissue:embryo|identified by:BPF 5|BioSampleModel:Model organism or animal                 BbF 5 72 72 embryo post 8 32hpf post BbF exposure 0.00007M     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP165143     40#-5.fastq.gz fastq 120375219.0 1104505.0 40# 5.fastq.gz 0:108.99 A:28370884;C:32019915;G:31648198;T:28336222;N:0 108       28370884 32019915 31648198 28336222 0 SRX4833750 SRS3900653 SRA792561 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.96436   0.00022   0.97084   0.47733   98   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2019-11-10 Pharyngula Embryo Embryo Imprecise All anatomical structures
49620 49620 SRR8002799 SRX4833749 SRS3900652 SRP165143 PRJNA495439 Danio rerio strain:TU Genome sequencing PRJNA495439 Whole Genome Sequencing To assessment mixture effects of zenrafish two mixtures and their twelve components were tested by reduced zebrfish transcriptome approach.         40# 4   breed:TU|dev stage:32hpf|sex:pooled male and female|tissue:embryo|identified by:BPF 4|BioSampleModel:Model organism or animal                 BbF 4 71 71 embryo post 8 32hpf post BbF exposure 0.0007M     AMPLICON TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP165143     40#-4.fastq.gz fastq 125415442.0 1144541.0 40# 4.fastq.gz 0:109.58 A:29503933;C:33394229;G:32896101;T:29621179;N:0 109       29503933 33394229 32896101 29621179 0 SRX4833749 SRS3900652 SRA792561 Zebrafish embryo|School of the environment Zebrafish embryo 1 0.9565   0.00015   0.97088   0.48965   95   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Unknown 2019-11-10 Pharyngula Embryo Embryo Imprecise All anatomical structures

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;