metadata: run_metadata: 159 rows where experiment.library_selection = "Oligo-dT" and tissue

159 rows where experiment.library_selection = "Oligo-dT" and tissue_curation = "Trunk"

descending

Link	rowid ▼	run.accession	experiment.accession	sample.accession	study.accession	bioproject	study.title	study.alias	study.type	study.abstract	study.attributes	study.PMIDs	sample.description	sample.title	sample.alias	sample.centername	sample.attributes	experiment.title	experiment.alias	experiment.library_name	experiment.design_description	experiment.library_construction_protocol	experiment.library_strategy	experiment.library_source	experiment.library_selection	experiment.library_layout	experiment.platform	experiment.instrument_model	experiment.study_ref	run.title	run.attributes	run.filename	run.semantic_name	run.total_bases	run.total_spots	run.alias	run.read_lengths	run.base_counts	run.r1_length	run.r2_length	run.Acount	run.Ccount	run.Gcount	run.Tcount	run.Ncount	run.experiment	run.pool_member	submission.accession	submission.srasource	submission.bioprojectsource	seqdetective.n_mates	seqdetective.mapping_rate.mate1	seqdetective.mapping_rate.mate2	seqdetective.nofeature_rate.mate1	seqdetective.nofeature_rate.mate2	seqdetective.sparsity.mate1	seqdetective.sparsity.mate2	seqdetective.pos_strand_rate.mate1	seqdetective.pos_strand_rate.mate2	seqdetective.readlen.mate1	seqdetective.readlen.mate2	seqdetective.judgement.mate1	seqdetective.judgement.mate2	seqdetective.judgement.reason	platform_family	instrument_generation	read_bias	selection_class	prep_kit	sc_or_bulk	tech_class	technology	submission.bioprojectsource.country	earliest_date	devstage_curation	devstage_curation_coarse	tissue_curation	tissue_curation_coarse
11148	11148	ERR10034072	ERX9574476	ERS12562187	ERP140005	PRJEB55122	Danio developmental transcriptomes	ca4a518e-aaf7-42d9-9758-352aac808809	Other	Transcriptomic analysis of four different developmental stages of four Danio species D. rerio D. aesculapii Danio aff. kyathit striped also known as Danio quagga and D. albolineatus. Five biological replicates were sampled for every developmental stage of a species.	ENA FIRST PUBLIC:2022 08 05\|ENA LAST UPDATE:2022 08 08		Metamorphic tissue without xxx from Danio rerio	Drerio metamorphic 5	SAMEA110464159	max planck institute for biology	ENA FIRST PUBLIC:2022 08 08\|ENA LAST UPDATE:2022 08 08\|External Id:SAMEA110464159\|INSDC center alias:MAX PLANCK INSTITUTE FOR BIOLOGY\|INSDC center name:max planck institute for biology\|INSDC first public:2022 08 08T04:26:46Z\|INSDC last update:2022 08 08T04:26:46Z\|INSDC status:public\|Submitter Id:SAMPLE25\|collected by:Marco Podobnik\|collection date:2018 06 27\|common name:zebrafish\|dev stage:Metamorphic\|identified by:Marco Podobnik\|sample name:SAMPLE25\|sex:not provided\|tissue type:whole body without xxx	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 05 08 2022 14:25:08:835 19178	unspecified	1	Illumina TruSeq DNA Nano Kit	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	ERP140005	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2022 08 08\|ENA LAST UPDATE:2022 08 08	S879Nr25.1.fastq.gz S879Nr25.2.fastq.gz	fastq fastq	10120435126.0	50403985.0	ena RUN TAB 05 08 2022 14:25:08:835 19179	0:100.39 1:100.39	A:2679131890;C:2420708190;G:2483153503;T:2537307238;N:134305	100	100	2679131890	2420708190	2483153503	2537307238	134305	ERX9574476	ERS12562187	ERA16814395	max planck institute for biology\|European Nucleotide Archive	max planck institute for biology	2	0.96973	0.97106	0.04979	0.04949	0.71252	0.71654	0.4806	0.49338	101	101	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	trueseq	bulk	unknown	unknown	Germany	2022-08-05	Undetermined	Undetermined	Trunk	Surface Structure
11149	11149	ERR10034071	ERX9574475	ERS12562186	ERP140005	PRJEB55122	Danio developmental transcriptomes	ca4a518e-aaf7-42d9-9758-352aac808809	Other	Transcriptomic analysis of four different developmental stages of four Danio species D. rerio D. aesculapii Danio aff. kyathit striped also known as Danio quagga and D. albolineatus. Five biological replicates were sampled for every developmental stage of a species.	ENA FIRST PUBLIC:2022 08 05\|ENA LAST UPDATE:2022 08 08		Metamorphic tissue without xxx from Danio rerio	Drerio metamorphic 4	SAMEA110464158	max planck institute for biology	ENA FIRST PUBLIC:2022 08 08\|ENA LAST UPDATE:2022 08 08\|External Id:SAMEA110464158\|INSDC center alias:MAX PLANCK INSTITUTE FOR BIOLOGY\|INSDC center name:max planck institute for biology\|INSDC first public:2022 08 08T04:26:46Z\|INSDC last update:2022 08 08T04:26:46Z\|INSDC status:public\|Submitter Id:SAMPLE24\|collected by:Marco Podobnik\|collection date:2018 06 27\|common name:zebrafish\|dev stage:Metamorphic\|identified by:Marco Podobnik\|sample name:SAMPLE24\|sex:not provided\|tissue type:whole body without xxx	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 05 08 2022 14:25:08:835 19176	unspecified	1	Illumina TruSeq DNA Nano Kit	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	ERP140005	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2022 08 08\|ENA LAST UPDATE:2022 08 08	S879Nr24.1.fastq.gz S879Nr24.2.fastq.gz	fastq fastq	7845661906.0	39121993.0	ena RUN TAB 05 08 2022 14:25:08:835 19177	0:100.27 1:100.27	A:2096079479;C:1862247618;G:1929220494;T:1958006859;N:107456	100	100	2096079479	1862247618	1929220494	1958006859	107456	ERX9574475	ERS12562186	ERA16814395	max planck institute for biology\|European Nucleotide Archive	max planck institute for biology	2	0.96989	0.96986	0.04901	0.04902	0.71599	0.72301	0.48965	0.48827	101	101	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	trueseq	bulk	unknown	unknown	Germany	2022-08-05	Undetermined	Undetermined	Trunk	Surface Structure
11150	11150	ERR10034070	ERX9574474	ERS12562185	ERP140005	PRJEB55122	Danio developmental transcriptomes	ca4a518e-aaf7-42d9-9758-352aac808809	Other	Transcriptomic analysis of four different developmental stages of four Danio species D. rerio D. aesculapii Danio aff. kyathit striped also known as Danio quagga and D. albolineatus. Five biological replicates were sampled for every developmental stage of a species.	ENA FIRST PUBLIC:2022 08 05\|ENA LAST UPDATE:2022 08 08		Metamorphic tissue without xxx from Danio rerio	Drerio metamorphic 3	SAMEA110464157	max planck institute for biology	ENA FIRST PUBLIC:2022 08 08\|ENA LAST UPDATE:2022 08 08\|External Id:SAMEA110464157\|INSDC center alias:MAX PLANCK INSTITUTE FOR BIOLOGY\|INSDC center name:max planck institute for biology\|INSDC first public:2022 08 08T04:26:46Z\|INSDC last update:2022 08 08T04:26:46Z\|INSDC status:public\|Submitter Id:SAMPLE23\|collected by:Marco Podobnik\|collection date:2018 06 27\|common name:zebrafish\|dev stage:Metamorphic\|identified by:Marco Podobnik\|sample name:SAMPLE23\|sex:not provided\|tissue type:whole body without xxx	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 05 08 2022 14:25:08:835 19174	unspecified	1	Illumina TruSeq DNA Nano Kit	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	ERP140005	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2022 08 08\|ENA LAST UPDATE:2022 08 08	S879Nr23.1.fastq.gz S879Nr23.2.fastq.gz	fastq fastq	8270390422.0	41338131.0	ena RUN TAB 05 08 2022 14:25:08:835 19175	0:100.03 1:100.03	A:2156060704;C:1998612686;G:2055201244;T:2060404840;N:110948	100	100	2156060704	1998612686	2055201244	2060404840	110948	ERX9574474	ERS12562185	ERA16814395	max planck institute for biology\|European Nucleotide Archive	max planck institute for biology	2	0.97085	0.97083	0.04232	0.04236	0.7219	0.72671	0.47325	0.4807	101	101	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	trueseq	bulk	unknown	unknown	Germany	2022-08-05	Undetermined	Undetermined	Trunk	Surface Structure
11151	11151	ERR10034069	ERX9574473	ERS12562184	ERP140005	PRJEB55122	Danio developmental transcriptomes	ca4a518e-aaf7-42d9-9758-352aac808809	Other	Transcriptomic analysis of four different developmental stages of four Danio species D. rerio D. aesculapii Danio aff. kyathit striped also known as Danio quagga and D. albolineatus. Five biological replicates were sampled for every developmental stage of a species.	ENA FIRST PUBLIC:2022 08 05\|ENA LAST UPDATE:2022 08 08		Metamorphic tissue without xxx from Danio rerio	Drerio metamorphic 2	SAMEA110464156	max planck institute for biology	ENA FIRST PUBLIC:2022 08 08\|ENA LAST UPDATE:2022 08 08\|External Id:SAMEA110464156\|INSDC center alias:MAX PLANCK INSTITUTE FOR BIOLOGY\|INSDC center name:max planck institute for biology\|INSDC first public:2022 08 08T04:26:46Z\|INSDC last update:2022 08 08T04:26:46Z\|INSDC status:public\|Submitter Id:SAMPLE22\|collected by:Marco Podobnik\|collection date:2018 06 27\|common name:zebrafish\|dev stage:Metamorphic\|identified by:Marco Podobnik\|sample name:SAMPLE22\|sex:not provided\|tissue type:whole body without xxx	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 05 08 2022 14:25:08:834 19172	unspecified	1	Illumina TruSeq DNA Nano Kit	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	ERP140005	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2022 08 08\|ENA LAST UPDATE:2022 08 08	S879Nr22.1.fastq.gz S879Nr22.2.fastq.gz	fastq fastq	10977356920.0	54380062.0	ena RUN TAB 05 08 2022 14:25:08:834 19173	0:100.93 1:100.93	A:2852856166;C:2671616791;G:2798184312;T:2654546853;N:152798	100	100	2852856166	2671616791	2798184312	2654546853	152798	ERX9574473	ERS12562184	ERA16814395	max planck institute for biology\|European Nucleotide Archive	max planck institute for biology	2	0.9765	0.97629	0.03531	0.03529	0.72025	0.72705	0.47808	0.46326	101	101	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	trueseq	bulk	unknown	unknown	Germany	2022-08-05	Undetermined	Undetermined	Trunk	Surface Structure
11152	11152	ERR10034068	ERX9574472	ERS12562183	ERP140005	PRJEB55122	Danio developmental transcriptomes	ca4a518e-aaf7-42d9-9758-352aac808809	Other	Transcriptomic analysis of four different developmental stages of four Danio species D. rerio D. aesculapii Danio aff. kyathit striped also known as Danio quagga and D. albolineatus. Five biological replicates were sampled for every developmental stage of a species.	ENA FIRST PUBLIC:2022 08 05\|ENA LAST UPDATE:2022 08 08		Metamorphic tissue without xxx from Danio rerio	Drerio metamorphic 1	SAMEA110464155	max planck institute for biology	ENA FIRST PUBLIC:2022 08 08\|ENA LAST UPDATE:2022 08 08\|External Id:SAMEA110464155\|INSDC center alias:MAX PLANCK INSTITUTE FOR BIOLOGY\|INSDC center name:max planck institute for biology\|INSDC first public:2022 08 08T04:26:46Z\|INSDC last update:2022 08 08T04:26:46Z\|INSDC status:public\|Submitter Id:SAMPLE21\|collected by:Marco Podobnik\|collection date:2018 06 27\|common name:zebrafish\|dev stage:Metamorphic\|identified by:Marco Podobnik\|sample name:SAMPLE21\|sex:not provided\|tissue type:whole body without xxx	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 05 08 2022 14:25:08:834 19170	unspecified	1	Illumina TruSeq DNA Nano Kit	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	ERP140005	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2022 08 08\|ENA LAST UPDATE:2022 08 08	S879Nr21.1.fastq.gz S879Nr21.2.fastq.gz	fastq fastq	11346084502.0	56210802.0	ena RUN TAB 05 08 2022 14:25:08:834 19171	0:100.92 1:100.92	A:2950787998;C:2755514202;G:2902131288;T:2737495846;N:155168	100	100	2950787998	2755514202	2902131288	2737495846	155168	ERX9574472	ERS12562183	ERA16814395	max planck institute for biology\|European Nucleotide Archive	max planck institute for biology	2	0.9732	0.97208	0.02959	0.02983	0.72322	0.73135	0.47796	0.47326	101	101	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	trueseq	bulk	unknown	unknown	Germany	2022-08-05	Undetermined	Undetermined	Trunk	Surface Structure
11153	11153	ERR10034052	ERX9574456	ERS12562167	ERP140005	PRJEB55122	Danio developmental transcriptomes	ca4a518e-aaf7-42d9-9758-352aac808809	Other	Transcriptomic analysis of four different developmental stages of four Danio species D. rerio D. aesculapii Danio aff. kyathit striped also known as Danio quagga and D. albolineatus. Five biological replicates were sampled for every developmental stage of a species.	ENA FIRST PUBLIC:2022 08 05\|ENA LAST UPDATE:2022 08 08		Larval tissue without xxx from Danio rerio	Drerio larval 5	SAMEA110464139	max planck institute for biology	ENA FIRST PUBLIC:2022 08 08\|ENA LAST UPDATE:2022 08 08\|External Id:SAMEA110464139\|INSDC center alias:MAX PLANCK INSTITUTE FOR BIOLOGY\|INSDC center name:max planck institute for biology\|INSDC first public:2022 08 08T04:26:46Z\|INSDC last update:2022 08 08T04:26:46Z\|INSDC status:public\|Submitter Id:SAMPLE5\|collected by:Marco Podobnik\|collection date:2018 06 19\|common name:zebrafish\|dev stage:Larval\|identified by:Marco Podobnik\|sample name:SAMPLE5\|sex:not provided\|tissue type:whole body without xxx	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 05 08 2022 14:25:08:829 19138	unspecified	1	Illumina TruSeq DNA Nano Kit	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	ERP140005	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2022 08 08\|ENA LAST UPDATE:2022 08 08	S879Nr5.1.fastq.gz S879Nr5.2.fastq.gz	fastq fastq	7308445864.0	36509997.0	ena RUN TAB 05 08 2022 14:25:08:829 19139	0:100.09 1:100.09	A:1934019972;C:1742739870;G:1803466955;T:1828120200;N:98867	100	100	1934019972	1742739870	1803466955	1828120200	98867	ERX9574456	ERS12562167	ERA16814395	max planck institute for biology\|European Nucleotide Archive	max planck institute for biology	2	0.96596	0.96653	0.05312	0.05284	0.71323	0.71873	0.49632	0.48138	101	101	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	trueseq	bulk	unknown	unknown	Germany	2022-08-05	Larval	Larval	Trunk	Surface Structure
11154	11154	ERR10034051	ERX9574455	ERS12562166	ERP140005	PRJEB55122	Danio developmental transcriptomes	ca4a518e-aaf7-42d9-9758-352aac808809	Other	Transcriptomic analysis of four different developmental stages of four Danio species D. rerio D. aesculapii Danio aff. kyathit striped also known as Danio quagga and D. albolineatus. Five biological replicates were sampled for every developmental stage of a species.	ENA FIRST PUBLIC:2022 08 05\|ENA LAST UPDATE:2022 08 08		Larval tissue without xxx from Danio rerio	Drerio larval 4	SAMEA110464138	max planck institute for biology	ENA FIRST PUBLIC:2022 08 08\|ENA LAST UPDATE:2022 08 08\|External Id:SAMEA110464138\|INSDC center alias:MAX PLANCK INSTITUTE FOR BIOLOGY\|INSDC center name:max planck institute for biology\|INSDC first public:2022 08 08T04:26:46Z\|INSDC last update:2022 08 08T04:26:46Z\|INSDC status:public\|Submitter Id:SAMPLE4\|collected by:Marco Podobnik\|collection date:2018 06 19\|common name:zebrafish\|dev stage:Larval\|identified by:Marco Podobnik\|sample name:SAMPLE4\|sex:not provided\|tissue type:whole body without xxx	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 05 08 2022 14:25:08:822 19136	unspecified	1	Illumina TruSeq DNA Nano Kit	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	ERP140005	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2022 08 08\|ENA LAST UPDATE:2022 08 08	S879Nr4.1.fastq.gz S879Nr4.2.fastq.gz	fastq fastq	8046902370.0	40206331.0	ena RUN TAB 05 08 2022 14:25:08:829 19137	0:100.07 1:100.07	A:2154247315;C:1901540683;G:1965167700;T:2025838764;N:107908	100	100	2154247315	1901540683	1965167700	2025838764	107908	ERX9574455	ERS12562166	ERA16814395	max planck institute for biology\|European Nucleotide Archive	max planck institute for biology	2	0.96507	0.96543	0.05345	0.0533	0.71553	0.72123	0.48553	0.49	101	101	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	trueseq	bulk	unknown	unknown	Germany	2022-08-05	Larval	Larval	Trunk	Surface Structure
11155	11155	ERR10034050	ERX9574454	ERS12562165	ERP140005	PRJEB55122	Danio developmental transcriptomes	ca4a518e-aaf7-42d9-9758-352aac808809	Other	Transcriptomic analysis of four different developmental stages of four Danio species D. rerio D. aesculapii Danio aff. kyathit striped also known as Danio quagga and D. albolineatus. Five biological replicates were sampled for every developmental stage of a species.	ENA FIRST PUBLIC:2022 08 05\|ENA LAST UPDATE:2022 08 08		Larval tissue without xxx from Danio rerio	Drerio larval 3	SAMEA110464137	max planck institute for biology	ENA FIRST PUBLIC:2022 08 08\|ENA LAST UPDATE:2022 08 08\|External Id:SAMEA110464137\|INSDC center alias:MAX PLANCK INSTITUTE FOR BIOLOGY\|INSDC center name:max planck institute for biology\|INSDC first public:2022 08 08T04:26:46Z\|INSDC last update:2022 08 08T04:26:46Z\|INSDC status:public\|Submitter Id:SAMPLE3\|collected by:Marco Podobnik\|collection date:2018 06 19\|common name:zebrafish\|dev stage:Larval\|identified by:Marco Podobnik\|sample name:SAMPLE3\|sex:not provided\|tissue type:whole body without xxx	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 05 08 2022 14:25:08:821 19134	unspecified	1	Illumina TruSeq DNA Nano Kit	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	ERP140005	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2022 08 08\|ENA LAST UPDATE:2022 08 08	S879Nr3.1.fastq.gz S879Nr3.2.fastq.gz	fastq fastq	10897526786.0	54442757.0	ena RUN TAB 05 08 2022 14:25:08:821 19135	0:100.08 1:100.08	A:2902340346;C:2590905706;G:2655361716;T:2748771201;N:147817	100	100	2902340346	2590905706	2655361716	2748771201	147817	ERX9574454	ERS12562165	ERA16814395	max planck institute for biology\|European Nucleotide Archive	max planck institute for biology	2	0.93244	0.93322	0.04311	0.04269	0.72452	0.72723	0.49726	0.4784	101	101	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	trueseq	bulk	unknown	unknown	Germany	2022-08-05	Larval	Larval	Trunk	Surface Structure
11156	11156	ERR10034049	ERX9574453	ERS12562164	ERP140005	PRJEB55122	Danio developmental transcriptomes	ca4a518e-aaf7-42d9-9758-352aac808809	Other	Transcriptomic analysis of four different developmental stages of four Danio species D. rerio D. aesculapii Danio aff. kyathit striped also known as Danio quagga and D. albolineatus. Five biological replicates were sampled for every developmental stage of a species.	ENA FIRST PUBLIC:2022 08 05\|ENA LAST UPDATE:2022 08 08		Larval tissue without xxx from Danio rerio	Drerio larval 2	SAMEA110464136	max planck institute for biology	ENA FIRST PUBLIC:2022 08 08\|ENA LAST UPDATE:2022 08 08\|External Id:SAMEA110464136\|INSDC center alias:MAX PLANCK INSTITUTE FOR BIOLOGY\|INSDC center name:max planck institute for biology\|INSDC first public:2022 08 08T04:26:46Z\|INSDC last update:2022 08 08T04:26:46Z\|INSDC status:public\|Submitter Id:SAMPLE2\|collected by:Marco Podobnik\|collection date:2018 06 19\|common name:zebrafish\|dev stage:Larval\|identified by:Marco Podobnik\|sample name:SAMPLE2\|sex:not provided\|tissue type:whole body without xxx	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 05 08 2022 14:25:08:821 19132	unspecified	1	Illumina TruSeq DNA Nano Kit	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	ERP140005	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2022 08 08\|ENA LAST UPDATE:2022 08 08	S879Nr2.1.fastq.gz S879Nr2.2.fastq.gz	fastq fastq	8516273680.0	42589650.0	ena RUN TAB 05 08 2022 14:25:08:821 19133	0:99.98 1:99.98	A:2232300748;C:2055212367;G:2121115843;T:2107529926;N:114796	99	99	2232300748	2055212367	2121115843	2107529926	114796	ERX9574453	ERS12562164	ERA16814395	max planck institute for biology\|European Nucleotide Archive	max planck institute for biology	2	0.97117	0.97187	0.05876	0.05804	0.72115	0.72689	0.51447	0.50827	101	101	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	trueseq	bulk	unknown	unknown	Germany	2022-08-05	Larval	Larval	Trunk	Surface Structure
11157	11157	ERR10034048	ERX9574452	ERS12562163	ERP140005	PRJEB55122	Danio developmental transcriptomes	ca4a518e-aaf7-42d9-9758-352aac808809	Other	Transcriptomic analysis of four different developmental stages of four Danio species D. rerio D. aesculapii Danio aff. kyathit striped also known as Danio quagga and D. albolineatus. Five biological replicates were sampled for every developmental stage of a species.	ENA FIRST PUBLIC:2022 08 05\|ENA LAST UPDATE:2022 08 08		Larval tissue without xxx from Danio rerio	Drerio larval 1	SAMEA110464135	max planck institute for biology	ENA FIRST PUBLIC:2022 08 08\|ENA LAST UPDATE:2022 08 08\|External Id:SAMEA110464135\|INSDC center alias:MAX PLANCK INSTITUTE FOR BIOLOGY\|INSDC center name:max planck institute for biology\|INSDC first public:2022 08 08T04:26:46Z\|INSDC last update:2022 08 08T04:26:46Z\|INSDC status:public\|Submitter Id:SAMPLE1\|collected by:Marco Podobnik\|collection date:2018 06 19\|common name:zebrafish\|dev stage:Larval\|identified by:Marco Podobnik\|sample name:SAMPLE1\|sex:not provided\|tissue type:whole body without xxx	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 05 08 2022 14:25:08:820 19130	unspecified	1	Illumina TruSeq DNA Nano Kit	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	ERP140005	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2022 08 08\|ENA LAST UPDATE:2022 08 08	S879Nr1.1.fastq.gz S879Nr1.2.fastq.gz	fastq fastq	5477863098.0	27332001.0	ena RUN TAB 05 08 2022 14:25:08:821 19131	0:100.21 1:100.21	A:1436230762;C:1320194529;G:1370010454;T:1351352868;N:74485	100	100	1436230762	1320194529	1370010454	1351352868	74485	ERX9574452	ERS12562163	ERA16814395	max planck institute for biology\|European Nucleotide Archive	max planck institute for biology	2	0.97196	0.97163	0.05932	0.05814	0.72723	0.73348	0.50582	0.51053	101	101	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	trueseq	bulk	unknown	unknown	Germany	2022-08-05	Larval	Larval	Trunk	Surface Structure
24906	24906	SRR25532497	SRX21261798	SRS18515093	SRP453533	PRJNA1002570	MBT induced effects in zebrafish eyes	PRJNA1002570	Other	We intended to screen the key events in zebrafish larvae post MBT exposure.					control1		strain:not collected\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:not collected\|age:not collected\|dev stage:not collected\|collection date:2022 11\|geo loc name:China: Beijing\|sex:not applicable\|tissue:whole body\|lat lon:39.9 N 116.42 E\|sample type:whole organism\|BioSampleModel:Model organism or animal	RNAseq of fish	S10	S10	normal RNAseq of fish		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP453533			CK1_1.fq.gz CK1_2.fq.gz	fastq fastq	6650697900.0	22168993.0	CK1 1.fq.gz	0:150 1:150	A:1918460669;C:1420936092;G:1412569553;T:1898656995;N:74591	150	150	1918460669	1420936092	1412569553	1898656995	74591	SRX21261798	SRS18515093	SRA1687160	Chinese Academy of Sciences\|RESEARCH CENTER FOR ECO-ENVIRONMENTAL SCIENCES	Chinese Academy of Sciences	2	0.91765	0.91694	0.15569	0.15461	0.70185	0.7027	0.47761	0.47369	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2023-08-05	Undetermined	Larval	Trunk	Surface Structure
24907	24907	SRR25532498	SRX21261797	SRS18515092	SRP453533	PRJNA1002570	MBT induced effects in zebrafish eyes	PRJNA1002570	Other	We intended to screen the key events in zebrafish larvae post MBT exposure.					MBTH3		strain:not collected\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:not collected\|age:not collected\|dev stage:not collected\|collection date:2022 11\|geo loc name:China: Beijing\|sex:not applicable\|tissue:whole body\|lat lon:39.9 N 116.41 E\|sample type:whole organism\|BioSampleModel:Model organism or animal	RNAseq of fish	S9	S9	normal RNAseq of fish		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP453533			MBTH3_2.fq.gz MBTH3_1.fq.gz	fastq fastq	6333332100.0	21111107.0	MBTH3 1.fq.gz	0:150 1:150	A:1755718187;C:1429192980;G:1420776066;T:1727550080;N:94787	150	150	1755718187	1429192980	1420776066	1727550080	94787	SRX21261797	SRS18515092	SRA1687160	Chinese Academy of Sciences\|RESEARCH CENTER FOR ECO-ENVIRONMENTAL SCIENCES	Chinese Academy of Sciences	2	0.93518	0.93355	0.11668	0.11602	0.67799	0.67817	0.47705	0.47875	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2023-08-05	Undetermined	Larval	Trunk	Surface Structure
24908	24908	SRR25532499	SRX21261796	SRS18515091	SRP453533	PRJNA1002570	MBT induced effects in zebrafish eyes	PRJNA1002570	Other	We intended to screen the key events in zebrafish larvae post MBT exposure.					MBTH2		strain:not collected\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:not collected\|age:not collected\|dev stage:not collected\|collection date:2022 11\|geo loc name:China: Beijing\|sex:not applicable\|tissue:whole body\|lat lon:39.9 N 116.40 E\|sample type:whole organism\|BioSampleModel:Model organism or animal	RNAseq of fish	S8	S8	normal RNAseq of fish		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP453533			MBTH2_1.fq.gz MBTH2_2.fq.gz	fastq fastq	6373733400.0	21245778.0	MBTH2 1.fq.gz	0:150 1:150	A:1775132718;C:1430955007;G:1424605018;T:1742942742;N:97915	150	150	1775132718	1430955007	1424605018	1742942742	97915	SRX21261796	SRS18515091	SRA1687160	Chinese Academy of Sciences\|RESEARCH CENTER FOR ECO-ENVIRONMENTAL SCIENCES	Chinese Academy of Sciences	2	0.93081	0.93016	0.12061	0.11947	0.68215	0.68172	0.47956	0.48186	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2023-08-05	Undetermined	Larval	Trunk	Surface Structure
24909	24909	SRR25532500	SRX21261795	SRS18515090	SRP453533	PRJNA1002570	MBT induced effects in zebrafish eyes	PRJNA1002570	Other	We intended to screen the key events in zebrafish larvae post MBT exposure.					MBTH1		strain:not collected\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:not collected\|age:not collected\|dev stage:not collected\|collection date:2022 11\|geo loc name:China: Beijing\|sex:not applicable\|tissue:whole body\|lat lon:39.9 N 116.39 E\|sample type:whole organism\|BioSampleModel:Model organism or animal	RNAseq of fish	S7	S7	normal RNAseq of fish		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP453533			MBTH1_1.fq.gz MBTH1_2.fq.gz	fastq fastq	6224052600.0	20746842.0	MBTH1 1.fq.gz	0:150 1:150	A:1753175301;C:1379045823;G:1371537072;T:1720226102;N:68302	150	150	1753175301	1379045823	1371537072	1720226102	68302	SRX21261795	SRS18515090	SRA1687160	Chinese Academy of Sciences\|RESEARCH CENTER FOR ECO-ENVIRONMENTAL SCIENCES	Chinese Academy of Sciences	2	0.9276	0.92379	0.13642	0.13482	0.68416	0.68479	0.47638	0.47581	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2023-08-05	Undetermined	Larval	Trunk	Surface Structure
24910	24910	SRR25532501	SRX21261794	SRS18515089	SRP453533	PRJNA1002570	MBT induced effects in zebrafish eyes	PRJNA1002570	Other	We intended to screen the key events in zebrafish larvae post MBT exposure.					MBTM3		strain:not collected\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:not collected\|age:not collected\|dev stage:not collected\|collection date:2022 11\|geo loc name:China: Beijing\|sex:not applicable\|tissue:whole body\|lat lon:39.9 N 116.38 E\|sample type:whole organism\|BioSampleModel:Model organism or animal	RNAseq of fish	S6	S6	normal RNAseq of fish		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP453533			MBTM3_2.fq.gz MBTM3_1.fq.gz	fastq fastq	6885667800.0	22952226.0	MBTM3 1.fq.gz	0:150 1:150	A:1936367424;C:1526831248;G:1520656271;T:1901736749;N:76108	150	150	1936367424	1526831248	1520656271	1901736749	76108	SRX21261794	SRS18515089	SRA1687160	Chinese Academy of Sciences\|RESEARCH CENTER FOR ECO-ENVIRONMENTAL SCIENCES	Chinese Academy of Sciences	2	0.92736	0.92516	0.12801	0.12693	0.68982	0.69063	0.47163	0.4612	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2023-08-05	Undetermined	Larval	Trunk	Surface Structure
24911	24911	SRR25532502	SRX21261793	SRS18515088	SRP453533	PRJNA1002570	MBT induced effects in zebrafish eyes	PRJNA1002570	Other	We intended to screen the key events in zebrafish larvae post MBT exposure.					MBTM2		strain:not collected\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:not collected\|age:not collected\|dev stage:not collected\|collection date:2022 11\|geo loc name:China: Beijing\|sex:not applicable\|tissue:whole body\|lat lon:39.9 N 116.37 E\|sample type:whole organism\|BioSampleModel:Model organism or animal	RNAseq of fish	S5	S5	normal RNAseq of fish		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP453533			MBTM2_1.fq.gz MBTM2_2.fq.gz	fastq fastq	6529427400.0	21764758.0	MBTM2 1.fq.gz	0:150 1:150	A:1808908277;C:1472638598;G:1467975655;T:1779801002;N:103868	150	150	1808908277	1472638598	1467975655	1779801002	103868	SRX21261793	SRS18515088	SRA1687160	Chinese Academy of Sciences\|RESEARCH CENTER FOR ECO-ENVIRONMENTAL SCIENCES	Chinese Academy of Sciences	2	0.9296	0.93217	0.11772	0.11735	0.68262	0.68331	0.4724	0.4721	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2023-08-05	Undetermined	Larval	Trunk	Surface Structure
24912	24912	SRR25532503	SRX21261792	SRS18515087	SRP453533	PRJNA1002570	MBT induced effects in zebrafish eyes	PRJNA1002570	Other	We intended to screen the key events in zebrafish larvae post MBT exposure.					MBTM1		strain:not collected\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:not collected\|age:not collected\|dev stage:not collected\|collection date:2022 11\|geo loc name:China: Beijing\|sex:not applicable\|tissue:whole body\|lat lon:39.9 N 116.36 E\|sample type:whole organism\|BioSampleModel:Model organism or animal	RNAseq of fish	S4	S4	normal RNAseq of fish		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP453533			MBTM1_2.fq.gz MBTM1_1.fq.gz	fastq fastq	6733924800.0	22446416.0	MBTM1 1.fq.gz	0:150 1:150	A:1847490053;C:1535661831;G:1528806965;T:1821868439;N:97512	150	150	1847490053	1535661831	1528806965	1821868439	97512	SRX21261792	SRS18515087	SRA1687160	Chinese Academy of Sciences\|RESEARCH CENTER FOR ECO-ENVIRONMENTAL SCIENCES	Chinese Academy of Sciences	2	0.93177	0.93448	0.11165	0.11192	0.67722	0.67823	0.47325	0.46912	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2023-08-05	Undetermined	Larval	Trunk	Surface Structure
24913	24913	SRR25532504	SRX21261791	SRS18515086	SRP453533	PRJNA1002570	MBT induced effects in zebrafish eyes	PRJNA1002570	Other	We intended to screen the key events in zebrafish larvae post MBT exposure.					MBTL3		strain:not collected\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:not collected\|age:not collected\|dev stage:not collected\|collection date:2022 11\|geo loc name:China: Beijing\|sex:not applicable\|tissue:whole body\|lat lon:39.9 N 116.35 E\|sample type:whole organism\|BioSampleModel:Model organism or animal	RNAseq of fish	S3	S3	normal RNAseq of fish		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP453533			MBTL3_1.fq.gz MBTL3_2.fq.gz	fastq fastq	9066238500.0	30220795.0	MBTL3 1.fq.gz	0:150 1:150	A:2629692873;C:1932648084;G:1927694770;T:2576111685;N:91088	150	150	2629692873	1932648084	1927694770	2576111685	91088	SRX21261791	SRS18515086	SRA1687160	Chinese Academy of Sciences\|RESEARCH CENTER FOR ECO-ENVIRONMENTAL SCIENCES	Chinese Academy of Sciences	2	0.93079	0.91809	0.1476	0.14446	0.69201	0.69258	0.47663	0.47687	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2023-08-05	Undetermined	Larval	Trunk	Surface Structure
24914	24914	SRR25532505	SRX21261790	SRS18515085	SRP453533	PRJNA1002570	MBT induced effects in zebrafish eyes	PRJNA1002570	Other	We intended to screen the key events in zebrafish larvae post MBT exposure.					control3		strain:not collected\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:not collected\|age:not collected\|dev stage:not collected\|collection date:2022 11\|geo loc name:China: Beijing\|sex:not applicable\|tissue:whole body\|lat lon:39.9 N 116.44 E\|sample type:whole organism\|BioSampleModel:Model organism or animal	RNAseq of fish	S12	S12	normal RNAseq of fish		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP453533			CK3_1.fq.gz CK3_2.fq.gz	fastq fastq	6596041200.0	21986804.0	CK3 1.fq.gz	0:150 1:150	A:1886076947;C:1431757712;G:1423068767;T:1855067482;N:70292	150	150	1886076947	1431757712	1423068767	1855067482	70292	SRX21261790	SRS18515085	SRA1687160	Chinese Academy of Sciences\|RESEARCH CENTER FOR ECO-ENVIRONMENTAL SCIENCES	Chinese Academy of Sciences	2	0.92168	0.92147	0.14797	0.14768	0.68962	0.68935	0.47874	0.48307	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2023-08-05	Undetermined	Larval	Trunk	Surface Structure
24915	24915	SRR25532506	SRX21261789	SRS18515084	SRP453533	PRJNA1002570	MBT induced effects in zebrafish eyes	PRJNA1002570	Other	We intended to screen the key events in zebrafish larvae post MBT exposure.					control2		strain:not collected\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:not collected\|age:not collected\|dev stage:not collected\|collection date:2022 11\|geo loc name:China: Beijing\|sex:not applicable\|tissue:whole body\|lat lon:39.9 N 116.43 E\|sample type:whole organism\|BioSampleModel:Model organism or animal	RNAseq of fish	S11	S11	normal RNAseq of fish		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP453533			CK2_1.fq.gz CK2_2.fq.gz	fastq fastq	6749651400.0	22498838.0	CK2 1.fq.gz	0:150 1:150	A:1934306700;C:1451979582;G:1445551014;T:1917740723;N:73381	150	150	1934306700	1451979582	1445551014	1917740723	73381	SRX21261789	SRS18515084	SRA1687160	Chinese Academy of Sciences\|RESEARCH CENTER FOR ECO-ENVIRONMENTAL SCIENCES	Chinese Academy of Sciences	2	0.92261	0.92062	0.15096	0.14969	0.69783	0.69702	0.48303	0.49016	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2023-08-05	Undetermined	Larval	Trunk	Surface Structure
24916	24916	SRR25532507	SRX21261788	SRS18515083	SRP453533	PRJNA1002570	MBT induced effects in zebrafish eyes	PRJNA1002570	Other	We intended to screen the key events in zebrafish larvae post MBT exposure.					MBTL2		strain:not collected\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:not collected\|age:not collected\|dev stage:not collected\|collection date:2022 11\|geo loc name:China: Beijing\|sex:not applicable\|tissue:whole body\|lat lon:39.9 N 116.34 E\|sample type:whole organism\|BioSampleModel:Model organism or animal	RNAseq of fish	S2	S2	normal RNAseq of fish		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP453533			MBTL2_1.fq.gz MBTL2_2.fq.gz	fastq fastq	6868354800.0	22894516.0	MBTL2 1.fq.gz	0:150 1:150	A:1956017484;C:1493585329;G:1486220640;T:1932456728;N:74619	150	150	1956017484	1493585329	1486220640	1932456728	74619	SRX21261788	SRS18515083	SRA1687160	Chinese Academy of Sciences\|RESEARCH CENTER FOR ECO-ENVIRONMENTAL SCIENCES	Chinese Academy of Sciences	2	0.92126	0.91908	0.14701	0.14525	0.69394	0.69363	0.47281	0.47636	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2023-08-05	Undetermined	Larval	Trunk	Surface Structure
24917	24917	SRR25532508	SRX21261787	SRS18515082	SRP453533	PRJNA1002570	MBT induced effects in zebrafish eyes	PRJNA1002570	Other	We intended to screen the key events in zebrafish larvae post MBT exposure.					MBTL1		strain:not collected\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:not collected\|age:not collected\|dev stage:not collected\|collection date:2022 11\|geo loc name:China: Beijing\|sex:not applicable\|tissue:whole body\|lat lon:39.9 N 116.33 E\|sample type:whole organism\|BioSampleModel:Model organism or animal	RNAseq of fish	S1	S1	normal RNAseq of fish		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP453533			MBTL1_1.fq.gz MBTL1_2.fq.gz	fastq fastq	6305127900.0	21017093.0	MBTL1 1.fq.gz	0:150 1:150	A:1797030982;C:1364002775;G:1357954929;T:1786051425;N:87789	150	150	1797030982	1364002775	1357954929	1786051425	87789	SRX21261787	SRS18515082	SRA1687160	Chinese Academy of Sciences\|RESEARCH CENTER FOR ECO-ENVIRONMENTAL SCIENCES	Chinese Academy of Sciences	2	0.92195	0.92138	0.14404	0.1433	0.69656	0.69623	0.47185	0.46936	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2023-08-05	Undetermined	Larval	Trunk	Surface Structure
50907	50907	SRR8377207	SRX5187250	SRS4193652	SRP174644	PRJNA512103	Danio rerio amh mutant RNA Seq	PRJNA512103	Other	For 21dpf and 35dpf juvenile zebrafish trunk tissue was isolated by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. For adults ovary and testis was dissected separately from other tissues. Total RNA was extracted using the Ribopure Kit Thermo Fisher and polyA mRNA was enriched using Dynabeads Thermo Fisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex™ qRNA seq kit BIOO Scientific. Libraries were normalized to 2.3nM multiplexed and evaluated by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		pubmed:31399485			WT3 21d		strain:AB\|age:21 dpf determined\|tissue:trunk\|biomaterial provider:Zebrafish Facility at the University of Oregon\|collected by:Yilin Yan\|replicate:biological replicate 3 wild type 21 dpf organism or animal	Danio rerio amh mutant RNA seq	WT3 21d	WT3 21d	Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of the animals by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. Trunks were individually homogenized in 200ul Trizol. Total RNA was extracted following Amores 2011. Total RNA was enriched for mRNA using Dynabeads Oligodt25 ThermoFisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex qRNA seq kit BIOO Scientific. Library concentrations were quantified using a Qubit fluorometer Life Technologies normalized to a concentration of 2.3nM and multiplexed. Prior to sequencing we further evaluated the quality of the multiplexed library by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP174644			WT3_21d_R2.fq.gz WT3_21d_R1.fq.gz	fastq fastq	587656784.0	2909192.0	WT3 21d R1.fq.gz	0:101 1:101	A:147120638;C:141086680;G:143930359;T:154050320;N:1468787	101	101	147120638	141086680	143930359	154050320	1468787	SRX5187250	SRS4193652	SRA827573	University of Oregon\|Biology	University of Oregon	2	0.80926	0.85225	0.08368	0.05947	0.75485	0.75757	0.42523	0.58639	101	101	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-09-06	Larval	Larval	Trunk	Surface Structure
50908	50908	SRR8377208	SRX5187249	SRS4193651	SRP174644	PRJNA512103	Danio rerio amh mutant RNA Seq	PRJNA512103	Other	For 21dpf and 35dpf juvenile zebrafish trunk tissue was isolated by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. For adults ovary and testis was dissected separately from other tissues. Total RNA was extracted using the Ribopure Kit Thermo Fisher and polyA mRNA was enriched using Dynabeads Thermo Fisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex™ qRNA seq kit BIOO Scientific. Libraries were normalized to 2.3nM multiplexed and evaluated by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		pubmed:31399485			WT2 35d		strain:AB\|age:35 dpf determined\|tissue:trunk\|biomaterial provider:Zebrafish Facility at the University of Oregon\|collected by:Yilin Yan\|replicate:biological replicate 2 wild type 35 dpf organism or animal	Danio rerio amh mutant RNA seq	WT2 35d	WT2 35d	Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of the animals by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. Trunks were individually homogenized in 200ul Trizol. Total RNA was extracted following Amores 2011. Total RNA was enriched for mRNA using Dynabeads Oligodt25 ThermoFisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex qRNA seq kit BIOO Scientific. Library concentrations were quantified using a Qubit fluorometer Life Technologies normalized to a concentration of 2.3nM and multiplexed. Prior to sequencing we further evaluated the quality of the multiplexed library by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP174644			WT2_35d_R1.fq.gz WT2_35d_R2.fq.gz	fastq fastq	571893714.0	2831157.0	WT2 35d R1.fq.gz	0:101 1:101	A:145166622;C:135811176;G:137506724;T:151978871;N:1430321	101	101	145166622	135811176	137506724	151978871	1430321	SRX5187249	SRS4193651	SRA827573	University of Oregon\|Biology	University of Oregon	2	0.78867	0.8064	0.09492	0.07075	0.7558	0.7626	0.49842	0.62539	101	101	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-09-06	Juvenile	Juvenile	Trunk	Surface Structure
50909	50909	SRR8377209	SRX5187248	SRS4193650	SRP174644	PRJNA512103	Danio rerio amh mutant RNA Seq	PRJNA512103	Other	For 21dpf and 35dpf juvenile zebrafish trunk tissue was isolated by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. For adults ovary and testis was dissected separately from other tissues. Total RNA was extracted using the Ribopure Kit Thermo Fisher and polyA mRNA was enriched using Dynabeads Thermo Fisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex™ qRNA seq kit BIOO Scientific. Libraries were normalized to 2.3nM multiplexed and evaluated by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		pubmed:31399485			WT2 21d		strain:AB\|age:21 dpf determined\|tissue:trunk\|biomaterial provider:Zebrafish Facility at the University of Oregon\|collected by:Yilin Yan\|replicate:biological replicate 2 wild type 21 dpf organism or animal	Danio rerio amh mutant RNA seq	WT2 21d	WT2 21d	Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of the animals by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. Trunks were individually homogenized in 200ul Trizol. Total RNA was extracted following Amores 2011. Total RNA was enriched for mRNA using Dynabeads Oligodt25 ThermoFisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex qRNA seq kit BIOO Scientific. Library concentrations were quantified using a Qubit fluorometer Life Technologies normalized to a concentration of 2.3nM and multiplexed. Prior to sequencing we further evaluated the quality of the multiplexed library by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP174644			WT2_21d_R1.fq.gz WT2_21d_R2.fq.gz	fastq fastq	848802384.0	4201992.0	WT2 21d R1.fq.gz	0:101 1:101	A:210959204;C:204406512;G:209363494;T:221949337;N:2123837	101	101	210959204	204406512	209363494	221949337	2123837	SRX5187248	SRS4193650	SRA827573	University of Oregon\|Biology	University of Oregon	2	0.81423	0.85754	0.08287	0.05582	0.75889	0.7623	0.42817	0.57447	101	101	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-09-06	Larval	Larval	Trunk	Surface Structure
50910	50910	SRR8377210	SRX5187247	SRS4193649	SRP174644	PRJNA512103	Danio rerio amh mutant RNA Seq	PRJNA512103	Other	For 21dpf and 35dpf juvenile zebrafish trunk tissue was isolated by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. For adults ovary and testis was dissected separately from other tissues. Total RNA was extracted using the Ribopure Kit Thermo Fisher and polyA mRNA was enriched using Dynabeads Thermo Fisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex™ qRNA seq kit BIOO Scientific. Libraries were normalized to 2.3nM multiplexed and evaluated by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		pubmed:31399485			WT1 35d		strain:AB\|age:35 dpf determined\|tissue:trunk\|biomaterial provider:Zebrafish Facility at the University of Oregon\|collected by:Yilin Yan\|replicate:biological replicate 1 wild type 35 dpf organism or animal	Danio rerio amh mutant RNA seq	WT1 35d	WT1 35d	Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of the animals by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. Trunks were individually homogenized in 200ul Trizol. Total RNA was extracted following Amores 2011. Total RNA was enriched for mRNA using Dynabeads Oligodt25 ThermoFisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex qRNA seq kit BIOO Scientific. Library concentrations were quantified using a Qubit fluorometer Life Technologies normalized to a concentration of 2.3nM and multiplexed. Prior to sequencing we further evaluated the quality of the multiplexed library by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP174644			WT1_35d_R1.fq.gz WT1_35d_R2.fq.gz	fastq fastq	1155741586.0	5721493.0	WT1 35d R1.fq.gz	0:101 1:101	A:292356993;C:274928333;G:278712623;T:306842252;N:2901385	101	101	292356993	274928333	278712623	306842252	2901385	SRX5187247	SRS4193649	SRA827573	University of Oregon\|Biology	University of Oregon	2	0.76241	0.80051	0.10558	0.07532	0.75211	0.75266	0.4642	0.64552	101	101	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-09-06	Juvenile	Juvenile	Trunk	Surface Structure
50915	50915	SRR8377215	SRX5187242	SRS4193644	SRP174644	PRJNA512103	Danio rerio amh mutant RNA Seq	PRJNA512103	Other	For 21dpf and 35dpf juvenile zebrafish trunk tissue was isolated by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. For adults ovary and testis was dissected separately from other tissues. Total RNA was extracted using the Ribopure Kit Thermo Fisher and polyA mRNA was enriched using Dynabeads Thermo Fisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex™ qRNA seq kit BIOO Scientific. Libraries were normalized to 2.3nM multiplexed and evaluated by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		pubmed:31399485			WT4 21d		strain:AB\|age:21 dpf determined\|tissue:trunk\|biomaterial provider:Zebrafish Facility at the University of Oregon\|collected by:Yilin Yan\|replicate:biological replicate 4 wild type 21 dpf organism or animal	Danio rerio amh mutant RNA seq	WT4 21d	WT4 21d	Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of the animals by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. Trunks were individually homogenized in 200ul Trizol. Total RNA was extracted following Amores 2011. Total RNA was enriched for mRNA using Dynabeads Oligodt25 ThermoFisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex qRNA seq kit BIOO Scientific. Library concentrations were quantified using a Qubit fluorometer Life Technologies normalized to a concentration of 2.3nM and multiplexed. Prior to sequencing we further evaluated the quality of the multiplexed library by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP174644			WT4_21d_R1.fq.gz WT4_21d_R2.fq.gz	fastq fastq	3712802016.0	18380208.0	WT4 21d R1.fq.gz	0:101 1:101	A:933429939;C:885854814;G:905931198;T:978273413;N:9312652	101	101	933429939	885854814	905931198	978273413	9312652	SRX5187242	SRS4193644	SRA827573	University of Oregon\|Biology	University of Oregon	2	0.79693	0.83824	0.07527	0.05853	0.73957	0.74164	0.44482	0.59365	101	101	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-09-06	Larval	Larval	Trunk	Surface Structure
50916	50916	SRR8377216	SRX5187241	SRS4193643	SRP174644	PRJNA512103	Danio rerio amh mutant RNA Seq	PRJNA512103	Other	For 21dpf and 35dpf juvenile zebrafish trunk tissue was isolated by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. For adults ovary and testis was dissected separately from other tissues. Total RNA was extracted using the Ribopure Kit Thermo Fisher and polyA mRNA was enriched using Dynabeads Thermo Fisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex™ qRNA seq kit BIOO Scientific. Libraries were normalized to 2.3nM multiplexed and evaluated by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		pubmed:31399485			WT3 35d		strain:AB\|age:35 dpf determined\|tissue:trunk\|biomaterial provider:Zebrafish Facility at the University of Oregon\|collected by:Yilin Yan\|replicate:biological replicate 3 wild type 35 dpf organism or animal	Danio rerio amh mutant RNA seq	WT3 35d	WT3 35d	Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of the animals by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. Trunks were individually homogenized in 200ul Trizol. Total RNA was extracted following Amores 2011. Total RNA was enriched for mRNA using Dynabeads Oligodt25 ThermoFisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex qRNA seq kit BIOO Scientific. Library concentrations were quantified using a Qubit fluorometer Life Technologies normalized to a concentration of 2.3nM and multiplexed. Prior to sequencing we further evaluated the quality of the multiplexed library by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP174644			WT3_35d_R1.fq.gz WT3_35d_R2.fq.gz	fastq fastq	2213899396.0	10959898.0	WT3 35d R1.fq.gz	0:101 1:101	A:554041965;C:532710862;G:540276530;T:581316693;N:5553346	101	101	554041965	532710862	540276530	581316693	5553346	SRX5187241	SRS4193643	SRA827573	University of Oregon\|Biology	University of Oregon	2	0.79591	0.83174	0.09578	0.06681	0.7302	0.73026	0.44297	0.62741	101	101	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-09-06	Juvenile	Juvenile	Trunk	Surface Structure
50917	50917	SRR8377217	SRX5187240	SRS4193642	SRP174644	PRJNA512103	Danio rerio amh mutant RNA Seq	PRJNA512103	Other	For 21dpf and 35dpf juvenile zebrafish trunk tissue was isolated by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. For adults ovary and testis was dissected separately from other tissues. Total RNA was extracted using the Ribopure Kit Thermo Fisher and polyA mRNA was enriched using Dynabeads Thermo Fisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex™ qRNA seq kit BIOO Scientific. Libraries were normalized to 2.3nM multiplexed and evaluated by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		pubmed:31399485			Mut4 21d		strain:AB\|age:21 dpf determined\|tissue:trunk\|biomaterial provider:Zebrafish Facility at the University of Oregon\|collected by:Yilin Yan\|replicate:biological replicate 4 mutant 21 dpf organism or animal	Danio rerio amh mutant RNA seq	Mut4 21d	Mut4 21d	Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of the animals by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. Trunks were individually homogenized in 200ul Trizol. Total RNA was extracted following {Amores 2011 #69}. Total RNA was enriched for mRNA using Dynabeads Oligodt25 ThermoFisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex qRNA seq kit BIOO Scientific. Library concentrations were quantified using a Qubit fluorometer Life Technologies normalized to a concentration of 2.3nM and multiplexed. Prior to sequencing we further evaluated the quality of the multiplexed library by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP174644			Mut4_21d_R2.fq.gz Mut4_21d_R1.fq.gz	fastq fastq	2074916730.0	10271865.0	Mut4 21d R1.fq.gz	0:101 1:101	A:504409205;C:511125708;G:525381023;T:528812063;N:5188731	101	101	504409205	511125708	525381023	528812063	5188731	SRX5187240	SRS4193642	SRA827573	University of Oregon\|Biology	University of Oregon	2	0.80717	0.85419	0.07197	0.04529	0.7713	0.77222	0.40469	0.57073	101	101	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-09-06	Larval	Larval	Trunk	Surface Structure
50918	50918	SRR8377218	SRX5187239	SRS4193641	SRP174644	PRJNA512103	Danio rerio amh mutant RNA Seq	PRJNA512103	Other	For 21dpf and 35dpf juvenile zebrafish trunk tissue was isolated by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. For adults ovary and testis was dissected separately from other tissues. Total RNA was extracted using the Ribopure Kit Thermo Fisher and polyA mRNA was enriched using Dynabeads Thermo Fisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex™ qRNA seq kit BIOO Scientific. Libraries were normalized to 2.3nM multiplexed and evaluated by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		pubmed:31399485			Mut4 35d		strain:AB\|age:35 dpf determined\|tissue:trunk\|biomaterial provider:Zebrafish Facility at the University of Oregon\|collected by:Yilin Yan\|replicate:biological replicate 4 mutant 35 dpf organism or animal	Danio rerio amh mutant RNA seq	Mut4 35d	Mut4 35d	Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of the animals by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. Trunks were individually homogenized in 200ul Trizol. Total RNA was extracted following {Amores 2011 #69}. Total RNA was enriched for mRNA using Dynabeads Oligodt25 ThermoFisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex qRNA seq kit BIOO Scientific. Library concentrations were quantified using a Qubit fluorometer Life Technologies normalized to a concentration of 2.3nM and multiplexed. Prior to sequencing we further evaluated the quality of the multiplexed library by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP174644			Mut4_35d_R2.fq.gz Mut4_35d_R1.fq.gz	fastq fastq	513244832.0	2540816.0	Mut4 35d R1.fq.gz	0:101 1:101	A:129206304;C:122668650;G:124118336;T:135960922;N:1290620	101	101	129206304	122668650	124118336	135960922	1290620	SRX5187239	SRS4193641	SRA827573	University of Oregon\|Biology	University of Oregon	2	0.75977	0.79881	0.08292	0.05843	0.73821	0.73841	0.46109	0.63029	101	101	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-09-06	Juvenile	Juvenile	Trunk	Surface Structure
50919	50919	SRR8377219	SRX5187238	SRS4193640	SRP174644	PRJNA512103	Danio rerio amh mutant RNA Seq	PRJNA512103	Other	For 21dpf and 35dpf juvenile zebrafish trunk tissue was isolated by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. For adults ovary and testis was dissected separately from other tissues. Total RNA was extracted using the Ribopure Kit Thermo Fisher and polyA mRNA was enriched using Dynabeads Thermo Fisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex™ qRNA seq kit BIOO Scientific. Libraries were normalized to 2.3nM multiplexed and evaluated by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		pubmed:31399485			Mut3 21d		strain:AB\|age:21 dpf determined\|tissue:trunk\|biomaterial provider:Zebrafish Facility at the University of Oregon\|collected by:Yilin Yan\|replicate:biological replicate 3 mutant 21 dpf organism or animal	Danio rerio amh mutant RNA seq	Mut3 21d	Mut3 21d	Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of the animals by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. Trunks were individually homogenized in 200ul Trizol. Total RNA was extracted following {Amores 2011 #69}. Total RNA was enriched for mRNA using Dynabeads Oligodt25 ThermoFisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex qRNA seq kit BIOO Scientific. Library concentrations were quantified using a Qubit fluorometer Life Technologies normalized to a concentration of 2.3nM and multiplexed. Prior to sequencing we further evaluated the quality of the multiplexed library by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP174644			Mut3_21d_R2.fq.gz Mut3_21d_R1.fq.gz	fastq fastq	2254342826.0	11160113.0	Mut3 21d R1.fq.gz	0:101 1:101	A:566605294;C:540302756;G:549581106;T:592199314;N:5654356	101	101	566605294	540302756	549581106	592199314	5654356	SRX5187238	SRS4193640	SRA827573	University of Oregon\|Biology	University of Oregon	2	0.80094	0.84348	0.09179	0.06509	0.74984	0.7515	0.42995	0.58997	101	101	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2018-12-28	Larval	Larval	Trunk	Surface Structure
50920	50920	SRR8377220	SRX5187237	SRS4193639	SRP174644	PRJNA512103	Danio rerio amh mutant RNA Seq	PRJNA512103	Other	For 21dpf and 35dpf juvenile zebrafish trunk tissue was isolated by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. For adults ovary and testis was dissected separately from other tissues. Total RNA was extracted using the Ribopure Kit Thermo Fisher and polyA mRNA was enriched using Dynabeads Thermo Fisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex™ qRNA seq kit BIOO Scientific. Libraries were normalized to 2.3nM multiplexed and evaluated by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		pubmed:31399485			Mut3 35d		strain:AB\|age:35 dpf determined\|tissue:trunk\|biomaterial provider:Zebrafish Facility at the University of Oregon\|collected by:Yilin Yan\|replicate:biological replicate 3 mutant 35 dpf organism or animal	Danio rerio amh mutant RNA seq	Mut3 35d	Mut3 35d	Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of the animals by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. Trunks were individually homogenized in 200ul Trizol. Total RNA was extracted following {Amores 2011 #69}. Total RNA was enriched for mRNA using Dynabeads Oligodt25 ThermoFisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex qRNA seq kit BIOO Scientific. Library concentrations were quantified using a Qubit fluorometer Life Technologies normalized to a concentration of 2.3nM and multiplexed. Prior to sequencing we further evaluated the quality of the multiplexed library by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP174644			Mut3_35d_R2.fq.gz Mut3_35d_R1.fq.gz	fastq fastq	538713800.0	2666900.0	Mut3 35d R1.fq.gz	0:101 1:101	A:137960428;C:126697441;G:128931488;T:143775732;N:1348711	101	101	137960428	126697441	128931488	143775732	1348711	SRX5187237	SRS4193639	SRA827573	University of Oregon\|Biology	University of Oregon	2	0.74719	0.78839	0.09758	0.07078	0.74243	0.74552	0.41904	0.61805	101	101	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2018-12-28	Juvenile	Juvenile	Trunk	Surface Structure
50921	50921	SRR8377221	SRX5187236	SRS4193638	SRP174644	PRJNA512103	Danio rerio amh mutant RNA Seq	PRJNA512103	Other	For 21dpf and 35dpf juvenile zebrafish trunk tissue was isolated by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. For adults ovary and testis was dissected separately from other tissues. Total RNA was extracted using the Ribopure Kit Thermo Fisher and polyA mRNA was enriched using Dynabeads Thermo Fisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex™ qRNA seq kit BIOO Scientific. Libraries were normalized to 2.3nM multiplexed and evaluated by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		pubmed:31399485			Mut2 21d		strain:AB\|age:21 dpf determined\|tissue:trunk\|biomaterial provider:Zebrafish Facility at the University of Oregon\|collected by:Yilin Yan\|replicate:biological replicate 2 mutant 21 dpf organism or animal	Danio rerio amh mutant RNA seq	Mut2 21d	Mut2 21d	Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of the animals by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. Trunks were individually homogenized in 200ul Trizol. Total RNA was extracted following {Amores 2011 #69}. Total RNA was enriched for mRNA using Dynabeads Oligodt25 ThermoFisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex qRNA seq kit BIOO Scientific. Library concentrations were quantified using a Qubit fluorometer Life Technologies normalized to a concentration of 2.3nM and multiplexed. Prior to sequencing we further evaluated the quality of the multiplexed library by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP174644			Mut2_21d_R1.fq.gz Mut2_21d_R2.fq.gz	fastq fastq	708251794.0	3506197.0	Mut2 21d R1.fq.gz	0:101 1:101	A:179039316;C:166989350;G:171231161;T:189221915;N:1770052	101	101	179039316	166989350	171231161	189221915	1770052	SRX5187236	SRS4193638	SRA827573	University of Oregon\|Biology	University of Oregon	2	0.78832	0.83214	0.07804	0.05769	0.75799	0.7595	0.46616	0.59051	101	101	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-09-06	Larval	Larval	Trunk	Surface Structure
50922	50922	SRR8377222	SRX5187235	SRS4193637	SRP174644	PRJNA512103	Danio rerio amh mutant RNA Seq	PRJNA512103	Other	For 21dpf and 35dpf juvenile zebrafish trunk tissue was isolated by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. For adults ovary and testis was dissected separately from other tissues. Total RNA was extracted using the Ribopure Kit Thermo Fisher and polyA mRNA was enriched using Dynabeads Thermo Fisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex™ qRNA seq kit BIOO Scientific. Libraries were normalized to 2.3nM multiplexed and evaluated by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		pubmed:31399485			Mut2 35d		strain:AB\|age:35 dpf determined\|tissue:trunk\|biomaterial provider:Zebrafish Facility at the University of Oregon\|collected by:Yilin Yan\|replicate:biological replicate 2 mutant 35 dpf organism or animal	Danio rerio amh mutant RNA seq	Mut2 35d	Mut2 35d	Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of the animals by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. Trunks were individually homogenized in 200ul Trizol. Total RNA was extracted following {Amores 2011 #69}. Total RNA was enriched for mRNA using Dynabeads Oligodt25 ThermoFisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex qRNA seq kit BIOO Scientific. Library concentrations were quantified using a Qubit fluorometer Life Technologies normalized to a concentration of 2.3nM and multiplexed. Prior to sequencing we further evaluated the quality of the multiplexed library by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP174644			Mut2_35d_R1.fq.gz Mut2_35d_R2.fq.gz	fastq fastq	477929374.0	2365987.0	Mut2 35d R1.fq.gz	0:101 1:101	A:120800666;C:113959321;G:115434316;T:126536893;N:1198178	101	101	120800666	113959321	115434316	126536893	1198178	SRX5187235	SRS4193637	SRA827573	University of Oregon\|Biology	University of Oregon	2	0.78113	0.82359	0.11386	0.07902	0.76357	0.764	0.45261	0.57374	101	101	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-09-06	Juvenile	Juvenile	Trunk	Surface Structure
50923	50923	SRR8377223	SRX5187234	SRS4193636	SRP174644	PRJNA512103	Danio rerio amh mutant RNA Seq	PRJNA512103	Other	For 21dpf and 35dpf juvenile zebrafish trunk tissue was isolated by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. For adults ovary and testis was dissected separately from other tissues. Total RNA was extracted using the Ribopure Kit Thermo Fisher and polyA mRNA was enriched using Dynabeads Thermo Fisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex™ qRNA seq kit BIOO Scientific. Libraries were normalized to 2.3nM multiplexed and evaluated by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		pubmed:31399485			Mut1 21d		strain:AB\|age:21 dpf determined\|tissue:trunk\|biomaterial provider:Zebrafish Facility at the University of Oregon\|birth date:Zebrafish Facility at the University of Oregon\|birth location:Zebrafish Facility at the University of Oregon\|breeding history:Zebrafish Facility at the University of Oregon\|breeding method:Zebrafish Facility at the University of Oregon\|cell line:Zebrafish Facility at the University of Oregon\|cell subtype:Zebrafish Facility at the University of Oregon\|cell type:Zebrafish Facility at the University of Oregon\|collected by:Yilin Yan\|replicate:biological replicate 1 mutant 21 dpf organism or animal	Danio rerio amh mutant RNA seq	Mut1 21d	Mut1 21d	Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of the animals by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. Trunks were individually homogenized in 200ul Trizol. Total RNA was extracted following {Amores 2011 #69}. Total RNA was enriched for mRNA using Dynabeads Oligodt25 ThermoFisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex qRNA seq kit BIOO Scientific. Library concentrations were quantified using a Qubit fluorometer Life Technologies normalized to a concentration of 2.3nM and multiplexed. Prior to sequencing we further evaluated the quality of the multiplexed library by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP174644			Mut1_21d_R2.fq.gz Mut1_21d_R1.fq.gz	fastq fastq	1115232910.0	5520955.0	Mut1 21d R1.fq.gz	0:101 1:101	A:280578424;C:264405723;G:270961347;T:296477869;N:2809547	101	101	280578424	264405723	270961347	296477869	2809547	SRX5187234	SRS4193636	SRA827573	University of Oregon\|Biology	University of Oregon	2	0.78358	0.8284	0.07854	0.05768	0.75708	0.75493	0.45076	0.61376	101	101	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2018-12-28	Larval	Larval	Trunk	Surface Structure
50924	50924	SRR8377224	SRX5187233	SRS4193635	SRP174644	PRJNA512103	Danio rerio amh mutant RNA Seq	PRJNA512103	Other	For 21dpf and 35dpf juvenile zebrafish trunk tissue was isolated by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. For adults ovary and testis was dissected separately from other tissues. Total RNA was extracted using the Ribopure Kit Thermo Fisher and polyA mRNA was enriched using Dynabeads Thermo Fisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex™ qRNA seq kit BIOO Scientific. Libraries were normalized to 2.3nM multiplexed and evaluated by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		pubmed:31399485			Mut1 35d		strain:AB\|age:35 dpf determined\|tissue:trunk\|biomaterial provider:Zebrafish Facility at the University of Oregon\|collected by:Yilin Yan\|replicate:biological replicate 1 mutant 35 dpf organism or animal	Danio rerio amh mutant RNA seq	Mut1 35d	Mut1 35d	Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of the animals by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. Trunks were individually homogenized in 200ul Trizol. Total RNA was extracted following {Amores 2011 #69}. Total RNA was enriched for mRNA using Dynabeads Oligodt25 ThermoFisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex qRNA seq kit BIOO Scientific. Library concentrations were quantified using a Qubit fluorometer Life Technologies normalized to a concentration of 2.3nM and multiplexed. Prior to sequencing we further evaluated the quality of the multiplexed library by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP174644			Mut1_35d_R1.fq.gz Mut1_35d_R2.fq.gz	fastq fastq	763890068.0	3781634.0	Mut1 35d R1.fq.gz	0:101 1:101	A:193272679;C:181852990;G:185455955;T:201399437;N:1909007	101	101	193272679	181852990	185455955	201399437	1909007	SRX5187233	SRS4193635	SRA827573	University of Oregon\|Biology	University of Oregon	2	0.76966	0.81108	0.1208	0.08422	0.76558	0.76674	0.42645	0.59374	101	101	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-09-06	Juvenile	Juvenile	Trunk	Surface Structure
50925	50925	SRR8377225	SRX5187232	SRS4193634	SRP174644	PRJNA512103	Danio rerio amh mutant RNA Seq	PRJNA512103	Other	For 21dpf and 35dpf juvenile zebrafish trunk tissue was isolated by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. For adults ovary and testis was dissected separately from other tissues. Total RNA was extracted using the Ribopure Kit Thermo Fisher and polyA mRNA was enriched using Dynabeads Thermo Fisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex™ qRNA seq kit BIOO Scientific. Libraries were normalized to 2.3nM multiplexed and evaluated by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		pubmed:31399485			Mut5 21d		strain:AB\|age:21 dpf determined\|tissue:trunk\|biomaterial provider:Zebrafish Facility at the University of Oregon\|collected by:Yilin Yan\|replicate:biological replicate 5 mutant 21 dpf organism or animal	Danio rerio amh mutant RNA seq	Mut5 21d	Mut5 21d	Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of the animals by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. Trunks were individually homogenized in 200ul Trizol. Total RNA was extracted following {Amores 2011 #69}. Total RNA was enriched for mRNA using Dynabeads Oligodt25 ThermoFisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex qRNA seq kit BIOO Scientific. Library concentrations were quantified using a Qubit fluorometer Life Technologies normalized to a concentration of 2.3nM and multiplexed. Prior to sequencing we further evaluated the quality of the multiplexed library by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP174644			Mut5_21d_R1.fq.gz Mut5_21d_R2.fq.gz	fastq fastq	870831696.0	4311048.0	Mut5 21d R1.fq.gz	0:101 1:101	A:219134081;C:208061540;G:212208204;T:229247534;N:2180337	101	101	219134081	208061540	212208204	229247534	2180337	SRX5187232	SRS4193634	SRA827573	University of Oregon\|Biology	University of Oregon	2	0.80249	0.84439	0.0697	0.05159	0.74188	0.74657	0.42727	0.56696	101	101	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-09-06	Larval	Larval	Trunk	Surface Structure
50926	50926	SRR8377226	SRX5187231	SRS4193633	SRP174644	PRJNA512103	Danio rerio amh mutant RNA Seq	PRJNA512103	Other	For 21dpf and 35dpf juvenile zebrafish trunk tissue was isolated by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. For adults ovary and testis was dissected separately from other tissues. Total RNA was extracted using the Ribopure Kit Thermo Fisher and polyA mRNA was enriched using Dynabeads Thermo Fisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex™ qRNA seq kit BIOO Scientific. Libraries were normalized to 2.3nM multiplexed and evaluated by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		pubmed:31399485			Mut5 35d		strain:AB\|age:35 dpf determined\|tissue:trunk\|biomaterial provider:Zebrafish Facility at the University of Oregon\|collected by:Yilin Yan\|replicate:biological replicate 5 mutant 35 dpf organism or animal	Danio rerio amh mutant RNA seq	Mut5 35d	Mut5 35d	Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of the animals by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. Trunks were individually homogenized in 200ul Trizol. Total RNA was extracted following {Amores 2011 #69}. Total RNA was enriched for mRNA using Dynabeads Oligodt25 ThermoFisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex qRNA seq kit BIOO Scientific. Library concentrations were quantified using a Qubit fluorometer Life Technologies normalized to a concentration of 2.3nM and multiplexed. Prior to sequencing we further evaluated the quality of the multiplexed library by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP174644			Mut5_35d_R1.fq.gz Mut5_35d_R2.fq.gz	fastq fastq	409858808.0	2029004.0	Mut5 35d R1.fq.gz	0:101 1:101	A:103983021;C:97241865;G:98716378;T:108891565;N:1025979	101	101	103983021	97241865	98716378	108891565	1025979	SRX5187231	SRS4193633	SRA827573	University of Oregon\|Biology	University of Oregon	2	0.76655	0.80882	0.0977	0.06882	0.74233	0.74308	0.45426	0.64072	101	101	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-09-06	Juvenile	Juvenile	Trunk	Surface Structure
50931	50931	SRR8377231	SRX5187226	SRS4193628	SRP174644	PRJNA512103	Danio rerio amh mutant RNA Seq	PRJNA512103	Other	For 21dpf and 35dpf juvenile zebrafish trunk tissue was isolated by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. For adults ovary and testis was dissected separately from other tissues. Total RNA was extracted using the Ribopure Kit Thermo Fisher and polyA mRNA was enriched using Dynabeads Thermo Fisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex™ qRNA seq kit BIOO Scientific. Libraries were normalized to 2.3nM multiplexed and evaluated by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		pubmed:31399485			Mut8 21d		strain:AB\|age:21 dpf determined\|tissue:trunk\|biomaterial provider:Zebrafish Facility at the University of Oregon\|collected by:Yilin Yan\|replicate:biological replicate 8 mutant 21 dpf organism or animal	Danio rerio amh mutant RNA seq	Mut8 21d	Mut8 21d	Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of the animals by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. Trunks were individually homogenized in 200ul Trizol. Total RNA was extracted following {Amores 2011 #69}. Total RNA was enriched for mRNA using Dynabeads Oligodt25 ThermoFisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex qRNA seq kit BIOO Scientific. Library concentrations were quantified using a Qubit fluorometer Life Technologies normalized to a concentration of 2.3nM and multiplexed. Prior to sequencing we further evaluated the quality of the multiplexed library by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP174644			Mut8_21d_R1.fq.gz Mut8_21d_R2.fq.gz	fastq fastq	3969928422.0	19653111.0	Mut8 21d R1.fq.gz	0:101 1:101	A:987300533;C:959296323;G:980750463;T:1032651762;N:9929341	101	101	987300533	959296323	980750463	1032651762	9929341	SRX5187226	SRS4193628	SRA827573	University of Oregon\|Biology	University of Oregon	2	0.82211	0.8576	0.08315	0.05545	0.75538	0.75964	0.43397	0.59195	101	101	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-09-06	Larval	Larval	Trunk	Surface Structure
50932	50932	SRR8377232	SRX5187225	SRS4193627	SRP174644	PRJNA512103	Danio rerio amh mutant RNA Seq	PRJNA512103	Other	For 21dpf and 35dpf juvenile zebrafish trunk tissue was isolated by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. For adults ovary and testis was dissected separately from other tissues. Total RNA was extracted using the Ribopure Kit Thermo Fisher and polyA mRNA was enriched using Dynabeads Thermo Fisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex™ qRNA seq kit BIOO Scientific. Libraries were normalized to 2.3nM multiplexed and evaluated by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		pubmed:31399485			Mut8 35d		strain:AB\|age:35 dpf determined\|tissue:trunk\|biomaterial provider:Zebrafish Facility at the University of Oregon\|collected by:Yilin Yan\|replicate:biological replicate 8 mutant 35 dpf organism or animal	Danio rerio amh mutant RNA seq	Mut8 35d	Mut8 35d	Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of the animals by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. Trunks were individually homogenized in 200ul Trizol. Total RNA was extracted following {Amores 2011 #69}. Total RNA was enriched for mRNA using Dynabeads Oligodt25 ThermoFisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex qRNA seq kit BIOO Scientific. Library concentrations were quantified using a Qubit fluorometer Life Technologies normalized to a concentration of 2.3nM and multiplexed. Prior to sequencing we further evaluated the quality of the multiplexed library by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP174644			Mut8_35d_R2.fq.gz Mut8_35d_R1.fq.gz	fastq fastq	45854.0	227.0	Mut8 35d R1.fq.gz	0:101 1:101	A:11862;C:10838;G:11042;T:11991;N:121	101	101	11862	10838	11042	11991	121	SRX5187225	SRS4193627	SRA827573	University of Oregon\|Biology	University of Oregon	2	0.69908	0.68966	0.08333	0.0862	0.99782	0.99827	0.54198	0.61538	101	101	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2018-12-28	Juvenile	Juvenile	Trunk	Surface Structure
50933	50933	SRR8377233	SRX5187224	SRS4193626	SRP174644	PRJNA512103	Danio rerio amh mutant RNA Seq	PRJNA512103	Other	For 21dpf and 35dpf juvenile zebrafish trunk tissue was isolated by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. For adults ovary and testis was dissected separately from other tissues. Total RNA was extracted using the Ribopure Kit Thermo Fisher and polyA mRNA was enriched using Dynabeads Thermo Fisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex™ qRNA seq kit BIOO Scientific. Libraries were normalized to 2.3nM multiplexed and evaluated by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		pubmed:31399485			Mut7 21d		strain:AB\|age:21 dpf determined\|tissue:trunk\|biomaterial provider:Zebrafish Facility at the University of Oregon\|collected by:Yilin Yan\|replicate:biological replicate 7 mutant 21 dpf organism or animal	Danio rerio amh mutant RNA seq	Mut7 21d	Mut7 21d	Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of the animals by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. Trunks were individually homogenized in 200ul Trizol. Total RNA was extracted following {Amores 2011 #69}. Total RNA was enriched for mRNA using Dynabeads Oligodt25 ThermoFisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex qRNA seq kit BIOO Scientific. Library concentrations were quantified using a Qubit fluorometer Life Technologies normalized to a concentration of 2.3nM and multiplexed. Prior to sequencing we further evaluated the quality of the multiplexed library by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP174644			Mut7_21d_R2.fq.gz Mut7_21d_R1.fq.gz	fastq fastq	16321384264.0	80798932.0	Mut7 21d R1.fq.gz	0:101 1:101	A:4040702375;C:3970895885;G:4043152335;T:4225822477;N:40811192	101	101	4040702375	3970895885	4043152335	4225822477	40811192	SRX5187224	SRS4193626	SRA827573	University of Oregon\|Biology	University of Oregon	2	0.82167	0.85831	0.07887	0.05422	0.75781	0.76282	0.42354	0.59476	101	101	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-09-06	Larval	Larval	Trunk	Surface Structure
50934	50934	SRR8377234	SRX5187223	SRS4193625	SRP174644	PRJNA512103	Danio rerio amh mutant RNA Seq	PRJNA512103	Other	For 21dpf and 35dpf juvenile zebrafish trunk tissue was isolated by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. For adults ovary and testis was dissected separately from other tissues. Total RNA was extracted using the Ribopure Kit Thermo Fisher and polyA mRNA was enriched using Dynabeads Thermo Fisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex™ qRNA seq kit BIOO Scientific. Libraries were normalized to 2.3nM multiplexed and evaluated by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		pubmed:31399485			Mut7 35d		strain:AB\|age:35 dpf determined\|tissue:trunk\|biomaterial provider:Zebrafish Facility at the University of Oregon\|collected by:Yilin Yan\|replicate:biological replicate 7 mutant 35 dpf organism or animal	Danio rerio amh mutant RNA seq	Mut7 35d	Mut7 35d	Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of the animals by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. Trunks were individually homogenized in 200ul Trizol. Total RNA was extracted following {Amores 2011 #69}. Total RNA was enriched for mRNA using Dynabeads Oligodt25 ThermoFisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex qRNA seq kit BIOO Scientific. Library concentrations were quantified using a Qubit fluorometer Life Technologies normalized to a concentration of 2.3nM and multiplexed. Prior to sequencing we further evaluated the quality of the multiplexed library by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP174644			Mut7_35d_R1.fq.gz Mut7_35d_R2.fq.gz	fastq fastq	482025328.0	2386264.0	Mut7 35d R1.fq.gz	0:101 1:101	A:121726092;C:114765680;G:117176132;T:127153823;N:1203601	101	101	121726092	114765680	117176132	127153823	1203601	SRX5187223	SRS4193625	SRA827573	University of Oregon\|Biology	University of Oregon	2	0.7944	0.81981	0.09158	0.06615	0.73868	0.74286	0.48604	0.60293	101	101	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-09-06	Juvenile	Juvenile	Trunk	Surface Structure
50935	50935	SRR8377235	SRX5187222	SRS4193624	SRP174644	PRJNA512103	Danio rerio amh mutant RNA Seq	PRJNA512103	Other	For 21dpf and 35dpf juvenile zebrafish trunk tissue was isolated by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. For adults ovary and testis was dissected separately from other tissues. Total RNA was extracted using the Ribopure Kit Thermo Fisher and polyA mRNA was enriched using Dynabeads Thermo Fisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex™ qRNA seq kit BIOO Scientific. Libraries were normalized to 2.3nM multiplexed and evaluated by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		pubmed:31399485			Mut6 21d		strain:AB\|age:21 dpf determined\|tissue:trunk\|biomaterial provider:Zebrafish Facility at the University of Oregon\|collected by:Yilin Yan\|replicate:biological replicate 6 mutant 21 dpf organism or animal	Danio rerio amh mutant RNA seq	Mut6 21d	Mut6 21d	Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of the animals by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. Trunks were individually homogenized in 200ul Trizol. Total RNA was extracted following {Amores 2011 #69}. Total RNA was enriched for mRNA using Dynabeads Oligodt25 ThermoFisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex qRNA seq kit BIOO Scientific. Library concentrations were quantified using a Qubit fluorometer Life Technologies normalized to a concentration of 2.3nM and multiplexed. Prior to sequencing we further evaluated the quality of the multiplexed library by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP174644			Mut6_21d_R1.fq.gz Mut6_21d_R2.fq.gz	fastq fastq	294980600.0	1460300.0	Mut6 21d R1.fq.gz	0:101 1:101	A:73333474;C:71294880;G:72988229;T:76625001;N:739016	101	101	73333474	71294880	72988229	76625001	739016	SRX5187222	SRS4193624	SRA827573	University of Oregon\|Biology	University of Oregon	2	0.81307	0.85599	0.09007	0.06036	0.76319	0.76495	0.43194	0.60462	101	101	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-09-06	Larval	Larval	Trunk	Surface Structure
50936	50936	SRR8377236	SRX5187221	SRS4193623	SRP174644	PRJNA512103	Danio rerio amh mutant RNA Seq	PRJNA512103	Other	For 21dpf and 35dpf juvenile zebrafish trunk tissue was isolated by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. For adults ovary and testis was dissected separately from other tissues. Total RNA was extracted using the Ribopure Kit Thermo Fisher and polyA mRNA was enriched using Dynabeads Thermo Fisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex™ qRNA seq kit BIOO Scientific. Libraries were normalized to 2.3nM multiplexed and evaluated by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		pubmed:31399485			Mut6 35d		strain:AB\|age:35 dpf determined\|tissue:trunk\|biomaterial provider:Zebrafish Facility at the University of Oregon\|collected by:Yilin Yan\|replicate:biological replicate 6 mutant 35 dpf organism or animal	Danio rerio amh mutant RNA seq	Mut6 35d	Mut6 35d	Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of the animals by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. Trunks were individually homogenized in 200ul Trizol. Total RNA was extracted following {Amores 2011 #69}. Total RNA was enriched for mRNA using Dynabeads Oligodt25 ThermoFisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex qRNA seq kit BIOO Scientific. Library concentrations were quantified using a Qubit fluorometer Life Technologies normalized to a concentration of 2.3nM and multiplexed. Prior to sequencing we further evaluated the quality of the multiplexed library by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP174644			Mut6_35d_R2.fq.gz Mut6_35d_R1.fq.gz	fastq fastq	547559178.0	2710689.0	Mut6 35d R1.fq.gz	0:101 1:101	A:142088966;C:126584543;G:128466439;T:149044813;N:1374417	101	101	142088966	126584543	128466439	149044813	1374417	SRX5187221	SRS4193623	SRA827573	University of Oregon\|Biology	University of Oregon	2	0.68203	0.72897	0.0848	0.06405	0.75982	0.75948	0.46606	0.62979	101	101	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2018-12-28	Juvenile	Juvenile	Trunk	Surface Structure
50937	50937	SRR8377237	SRX5187220	SRS4193622	SRP174644	PRJNA512103	Danio rerio amh mutant RNA Seq	PRJNA512103	Other	For 21dpf and 35dpf juvenile zebrafish trunk tissue was isolated by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. For adults ovary and testis was dissected separately from other tissues. Total RNA was extracted using the Ribopure Kit Thermo Fisher and polyA mRNA was enriched using Dynabeads Thermo Fisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex™ qRNA seq kit BIOO Scientific. Libraries were normalized to 2.3nM multiplexed and evaluated by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		pubmed:31399485			WT4 35d		strain:AB\|age:35 dpf determined\|tissue:trunk\|biomaterial provider:Zebrafish Facility at the University of Oregon\|collected by:Yilin Yan\|replicate:biological replicate 4 wild type 35 dpf organism or animal	Danio rerio amh mutant RNA seq	WT4 35d	WT4 35d	Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of the animals by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. Trunks were individually homogenized in 200ul Trizol. Total RNA was extracted following Amores 2011. Total RNA was enriched for mRNA using Dynabeads Oligodt25 ThermoFisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex qRNA seq kit BIOO Scientific. Library concentrations were quantified using a Qubit fluorometer Life Technologies normalized to a concentration of 2.3nM and multiplexed. Prior to sequencing we further evaluated the quality of the multiplexed library by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP174644			WT4_35d_R1.fq.gz WT4_35d_R2.fq.gz	fastq fastq	739057804.0	3658702.0	WT4 35d R1.fq.gz	0:101 1:101	A:180459808;C:181418460;G:184830579;T:190499000;N:1849957	101	101	180459808	181418460	184830579	190499000	1849957	SRX5187220	SRS4193622	SRA827573	University of Oregon\|Biology	University of Oregon	2	0.80755	0.83958	0.08323	0.05532	0.73251	0.73115	0.43394	0.59528	101	101	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-09-06	Juvenile	Juvenile	Trunk	Surface Structure
50938	50938	SRR8377238	SRX5187219	SRS4193621	SRP174644	PRJNA512103	Danio rerio amh mutant RNA Seq	PRJNA512103	Other	For 21dpf and 35dpf juvenile zebrafish trunk tissue was isolated by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. For adults ovary and testis was dissected separately from other tissues. Total RNA was extracted using the Ribopure Kit Thermo Fisher and polyA mRNA was enriched using Dynabeads Thermo Fisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex™ qRNA seq kit BIOO Scientific. Libraries were normalized to 2.3nM multiplexed and evaluated by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		pubmed:31399485			WT5 21d		strain:AB\|age:21 dpf determined\|tissue:trunk\|biomaterial provider:Zebrafish Facility at the University of Oregon\|collected by:Yilin Yan\|replicate:biological replicate 5 wild type 21 dpf organism or animal	Danio rerio amh mutant RNA seq	WT5 21d	WT5 21d	Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of the animals by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. Trunks were individually homogenized in 200ul Trizol. Total RNA was extracted following Amores 2011. Total RNA was enriched for mRNA using Dynabeads Oligodt25 ThermoFisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex qRNA seq kit BIOO Scientific. Library concentrations were quantified using a Qubit fluorometer Life Technologies normalized to a concentration of 2.3nM and multiplexed. Prior to sequencing we further evaluated the quality of the multiplexed library by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP174644			WT5_21d_R2.fq.gz WT5_21d_R1.fq.gz	fastq fastq	915198370.0	4530685.0	WT5 21d R1.fq.gz	0:101 1:101	A:229698310;C:218524850;G:223719886;T:240958214;N:2297110	101	101	229698310	218524850	223719886	240958214	2297110	SRX5187219	SRS4193621	SRA827573	University of Oregon\|Biology	University of Oregon	2	0.81599	0.84765	0.09039	0.06386	0.7501	0.75394	0.43936	0.59417	101	101	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2018-12-28	Larval	Larval	Trunk	Surface Structure
50939	50939	SRR8377239	SRX5187218	SRS4193620	SRP174644	PRJNA512103	Danio rerio amh mutant RNA Seq	PRJNA512103	Other	For 21dpf and 35dpf juvenile zebrafish trunk tissue was isolated by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. For adults ovary and testis was dissected separately from other tissues. Total RNA was extracted using the Ribopure Kit Thermo Fisher and polyA mRNA was enriched using Dynabeads Thermo Fisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex™ qRNA seq kit BIOO Scientific. Libraries were normalized to 2.3nM multiplexed and evaluated by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		pubmed:31399485			WT5 35d		strain:AB\|age:35 dpf determined\|tissue:trunk\|biomaterial provider:Zebrafish Facility at the University of Oregon\|collected by:Yilin Yan\|replicate:biological replicate 5 wild type 35 dpf organism or animal	Danio rerio amh mutant RNA seq	WT5 35d	WT5 35d	Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of the animals by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. Trunks were individually homogenized in 200ul Trizol. Total RNA was extracted following Amores 2011. Total RNA was enriched for mRNA using Dynabeads Oligodt25 ThermoFisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex qRNA seq kit BIOO Scientific. Library concentrations were quantified using a Qubit fluorometer Life Technologies normalized to a concentration of 2.3nM and multiplexed. Prior to sequencing we further evaluated the quality of the multiplexed library by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP174644			WT5_35d_R2.fq.gz WT5_35d_R1.fq.gz	fastq fastq	2566933786.0	12707593.0	WT5 35d R1.fq.gz	0:101 1:101	A:633536222;C:624684514;G:640292815;T:661995540;N:6424695	101	101	633536222	624684514	640292815	661995540	6424695	SRX5187218	SRS4193620	SRA827573	University of Oregon\|Biology	University of Oregon	2	0.78006	0.81406	0.09856	0.06416	0.76246	0.76548	0.44739	0.61325	101	101	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-09-06	Juvenile	Juvenile	Trunk	Surface Structure
50940	50940	SRR8377240	SRX5187217	SRS4193619	SRP174644	PRJNA512103	Danio rerio amh mutant RNA Seq	PRJNA512103	Other	For 21dpf and 35dpf juvenile zebrafish trunk tissue was isolated by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. For adults ovary and testis was dissected separately from other tissues. Total RNA was extracted using the Ribopure Kit Thermo Fisher and polyA mRNA was enriched using Dynabeads Thermo Fisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex™ qRNA seq kit BIOO Scientific. Libraries were normalized to 2.3nM multiplexed and evaluated by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		pubmed:31399485			WT6 21d		strain:AB\|age:21 dpf determined\|tissue:trunk\|biomaterial provider:Zebrafish Facility at the University of Oregon\|collected by:Yilin Yan\|replicate:biological replicate 6 wild type 21 dpf organism or animal	Danio rerio amh mutant RNA seq	WT6 21d	WT6 21d	Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of the animals by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. Trunks were individually homogenized in 200ul Trizol. Total RNA was extracted following Amores 2011. Total RNA was enriched for mRNA using Dynabeads Oligodt25 ThermoFisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex qRNA seq kit BIOO Scientific. Library concentrations were quantified using a Qubit fluorometer Life Technologies normalized to a concentration of 2.3nM and multiplexed. Prior to sequencing we further evaluated the quality of the multiplexed library by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP174644			WT6_21d_R1.fq.gz WT6_21d_R2.fq.gz	fastq fastq	1274131968.0	6307584.0	WT6 21d R1.fq.gz	0:101 1:101	A:310554655;C:313342370;G:320642902;T:326399747;N:3192294	101	101	310554655	313342370	320642902	326399747	3192294	SRX5187217	SRS4193619	SRA827573	University of Oregon\|Biology	University of Oregon	2	0.82612	0.86462	0.09725	0.05535	0.78159	0.78378	0.4273	0.6191	101	101	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-09-06	Larval	Larval	Trunk	Surface Structure
50941	50941	SRR8377241	SRX5187216	SRS4193618	SRP174644	PRJNA512103	Danio rerio amh mutant RNA Seq	PRJNA512103	Other	For 21dpf and 35dpf juvenile zebrafish trunk tissue was isolated by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. For adults ovary and testis was dissected separately from other tissues. Total RNA was extracted using the Ribopure Kit Thermo Fisher and polyA mRNA was enriched using Dynabeads Thermo Fisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex™ qRNA seq kit BIOO Scientific. Libraries were normalized to 2.3nM multiplexed and evaluated by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		pubmed:31399485			WT6 35d		strain:AB\|age:35 dpf determined\|tissue:trunk\|biomaterial provider:Zebrafish Facility at the University of Oregon\|collected by:Yilin Yan\|replicate:biological replicate 6 wild type 35 dpf organism or animal	Danio rerio amh mutant RNA seq	WT6 35d	WT6 35d	Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of the animals by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. Trunks were individually homogenized in 200ul Trizol. Total RNA was extracted following Amores 2011. Total RNA was enriched for mRNA using Dynabeads Oligodt25 ThermoFisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex qRNA seq kit BIOO Scientific. Library concentrations were quantified using a Qubit fluorometer Life Technologies normalized to a concentration of 2.3nM and multiplexed. Prior to sequencing we further evaluated the quality of the multiplexed library by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP174644			WT6_35d_R1.fq.gz WT6_35d_R2.fq.gz	fastq fastq	3854126670.0	19079835.0	WT6 35d R1.fq.gz	0:101 1:101	A:954892191;C:939940975;G:950682732;T:998987524;N:9623248	101	101	954892191	939940975	950682732	998987524	9623248	SRX5187216	SRS4193618	SRA827573	University of Oregon\|Biology	University of Oregon	2	0.79771	0.83006	0.08571	0.06024	0.75984	0.76319	0.46268	0.60806	101	101	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-09-06	Juvenile	Juvenile	Trunk	Surface Structure
50942	50942	SRR8377242	SRX5187215	SRS4193617	SRP174644	PRJNA512103	Danio rerio amh mutant RNA Seq	PRJNA512103	Other	For 21dpf and 35dpf juvenile zebrafish trunk tissue was isolated by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. For adults ovary and testis was dissected separately from other tissues. Total RNA was extracted using the Ribopure Kit Thermo Fisher and polyA mRNA was enriched using Dynabeads Thermo Fisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex™ qRNA seq kit BIOO Scientific. Libraries were normalized to 2.3nM multiplexed and evaluated by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		pubmed:31399485			WT7 21d		strain:AB\|age:21 dpf determined\|tissue:trunk\|biomaterial provider:Zebrafish Facility at the University of Oregon\|collected by:Yilin Yan\|replicate:biological replicate 7 wild type 21 dpf organism or animal	Danio rerio amh mutant RNA seq	WT7 21d	WT7 21d	Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of the animals by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. Trunks were individually homogenized in 200ul Trizol. Total RNA was extracted following Amores 2011. Total RNA was enriched for mRNA using Dynabeads Oligodt25 ThermoFisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex qRNA seq kit BIOO Scientific. Library concentrations were quantified using a Qubit fluorometer Life Technologies normalized to a concentration of 2.3nM and multiplexed. Prior to sequencing we further evaluated the quality of the multiplexed library by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP174644			WT7_21d_R1.fq.gz WT7_21d_R2.fq.gz	fastq fastq	809609940.0	4007970.0	WT7 21d R1.fq.gz	0:101 1:101	A:197254031;C:198233741;G:203686772;T:208409070;N:2026326	101	101	197254031	198233741	203686772	208409070	2026326	SRX5187215	SRS4193617	SRA827573	University of Oregon\|Biology	University of Oregon	2	0.82356	0.85925	0.08908	0.05166	0.76266	0.76662	0.40879	0.5883	101	101	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-09-06	Larval	Larval	Trunk	Surface Structure
50943	50943	SRR8377243	SRX5187214	SRS4193616	SRP174644	PRJNA512103	Danio rerio amh mutant RNA Seq	PRJNA512103	Other	For 21dpf and 35dpf juvenile zebrafish trunk tissue was isolated by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. For adults ovary and testis was dissected separately from other tissues. Total RNA was extracted using the Ribopure Kit Thermo Fisher and polyA mRNA was enriched using Dynabeads Thermo Fisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex™ qRNA seq kit BIOO Scientific. Libraries were normalized to 2.3nM multiplexed and evaluated by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		pubmed:31399485			WT7 35d		strain:AB\|age:35 dpf determined\|tissue:trunk\|biomaterial provider:Zebrafish Facility at the University of Oregon\|collected by:Yilin Yan\|replicate:biological replicate 7 wild type 35 dpf organism or animal	Danio rerio amh mutant RNA seq	WT7 35d	WT7 35d	Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of the animals by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. Trunks were individually homogenized in 200ul Trizol. Total RNA was extracted following Amores 2011. Total RNA was enriched for mRNA using Dynabeads Oligodt25 ThermoFisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex qRNA seq kit BIOO Scientific. Library concentrations were quantified using a Qubit fluorometer Life Technologies normalized to a concentration of 2.3nM and multiplexed. Prior to sequencing we further evaluated the quality of the multiplexed library by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP174644			WT7_35d_R1.fq.gz WT7_35d_R2.fq.gz	fastq fastq	2039843268.0	10098234.0	WT7 35d R1.fq.gz	0:101 1:101	A:509345773;C:493700254;G:500220571;T:531465526;N:5111144	101	101	509345773	493700254	500220571	531465526	5111144	SRX5187214	SRS4193616	SRA827573	University of Oregon\|Biology	University of Oregon	2	0.80902	0.83668	0.09137	0.0654	0.75499	0.75763	0.44568	0.61746	101	101	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-09-06	Juvenile	Juvenile	Trunk	Surface Structure
50944	50944	SRR8377244	SRX5187213	SRS4193615	SRP174644	PRJNA512103	Danio rerio amh mutant RNA Seq	PRJNA512103	Other	For 21dpf and 35dpf juvenile zebrafish trunk tissue was isolated by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. For adults ovary and testis was dissected separately from other tissues. Total RNA was extracted using the Ribopure Kit Thermo Fisher and polyA mRNA was enriched using Dynabeads Thermo Fisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex™ qRNA seq kit BIOO Scientific. Libraries were normalized to 2.3nM multiplexed and evaluated by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		pubmed:31399485			WT8 21d		strain:AB\|age:21 dpf determined\|tissue:trunk\|biomaterial provider:Zebrafish Facility at the University of Oregon\|collected by:Yilin Yan\|replicate:biological replicate 8 wild type 21 dpf organism or animal	Danio rerio amh mutant RNA seq	WT8 21d	WT8 21d	Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of the animals by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. Trunks were individually homogenized in 200ul Trizol. Total RNA was extracted following Amores 2011. Total RNA was enriched for mRNA using Dynabeads Oligodt25 ThermoFisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex qRNA seq kit BIOO Scientific. Library concentrations were quantified using a Qubit fluorometer Life Technologies normalized to a concentration of 2.3nM and multiplexed. Prior to sequencing we further evaluated the quality of the multiplexed library by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP174644			WT8_21d_R1.fq.gz WT8_21d_R2.fq.gz	fastq fastq	2465061752.0	12203276.0	WT8 21d R1.fq.gz	0:101 1:101	A:599019207;C:610254116;G:621365405;T:628247400;N:6175624	101	101	599019207	610254116	621365405	628247400	6175624	SRX5187213	SRS4193615	SRA827573	University of Oregon\|Biology	University of Oregon	2	0.83579	0.86839	0.14684	0.08307	0.77384	0.77437	0.38619	0.61336	101	101	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-09-06	Larval	Larval	Trunk	Surface Structure
50945	50945	SRR8377245	SRX5187212	SRS4193614	SRP174644	PRJNA512103	Danio rerio amh mutant RNA Seq	PRJNA512103	Other	For 21dpf and 35dpf juvenile zebrafish trunk tissue was isolated by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. For adults ovary and testis was dissected separately from other tissues. Total RNA was extracted using the Ribopure Kit Thermo Fisher and polyA mRNA was enriched using Dynabeads Thermo Fisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex™ qRNA seq kit BIOO Scientific. Libraries were normalized to 2.3nM multiplexed and evaluated by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		pubmed:31399485			WT8 35d		strain:AB\|age:35 dpf determined\|tissue:trunk\|biomaterial provider:Zebrafish Facility at the University of Oregon\|collected by:Yilin Yan\|replicate:biological replicate 8 wild type 35 dpf organism or animal	Danio rerio amh mutant RNA seq	WT8 35d	WT8 35d	Zebrafish were euthanized in Tricaine. We isolated gonad containing trunk of the animals by removing the anterior of the fish from just posterior of the pectoral fin and removing the caudal peduncle posterior to the anus. Trunks were individually homogenized in 200ul Trizol. Total RNA was extracted following Amores 2011. Total RNA was enriched for mRNA using Dynabeads Oligodt25 ThermoFisher. We constructed indexed strand specific cDNA sequencing libraries using the NEXTflex qRNA seq kit BIOO Scientific. Library concentrations were quantified using a Qubit fluorometer Life Technologies normalized to a concentration of 2.3nM and multiplexed. Prior to sequencing we further evaluated the quality of the multiplexed library by quantitative real time PCR using the Kapa Library Quantification Kit Kapa Biosystems. One lane of paired end 100 base pair bp sequencing was performed on an Illumina HiSeq 4000.		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP174644			WT8_35d_R1.fq.gz WT8_35d_R2.fq.gz	fastq fastq	1932194842.0	9565321.0	WT8 35d R1.fq.gz	0:101 1:101	A:482699320;C:469072746;G:471446663;T:504153836;N:4822277	101	101	482699320	469072746	471446663	504153836	4822277	SRX5187212	SRS4193614	SRA827573	University of Oregon\|Biology	University of Oregon	2	0.78256	0.81142	0.09076	0.0636	0.76343	0.76808	0.4583	0.63397	101	101	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-09-06	Juvenile	Juvenile	Trunk	Surface Structure
53490	53490	SRR9945454	SRX6694025	SRS5251307	SRP218026	PRJNA557895	The origin and evolution of RNA editing in Metazoan	PRJNA557895	Other	We shed light on the origin and evolution of RNA editing in Metazoan by selected representative 22 species 18 of which were sequenced by ourselves.					Replicate 2 for D.rerio		isolate:Drer 2\|age:not collected\|dev stage:not collected\|sex:not collected\|tissue:whole body\|BioSampleModel:Model organism or animal	Strand specific RNA seq of Danio rerio rep2: whole body	DrerWHANIddyEAAORAAPEI 218	DrerWHANIddyEAAORAAPEI 218	Both genomic DNA and total RNA were extracted from the whole body of an adult. The strand specific RNA seq library was prepared using the TruSeq Stranded mRNA LT Sample Prep RS 122 2101 Illumina and sequenced on the Illumina HiSeq 4000 platform according to the manufacturer's instructions. The DNA library was prepared using the MGIEasy DNA Library Prep Kit V1.1 MGI Tech and sequenced on the BGISEQ 500RS platform according to the manufacturer's instructions.		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP218026			170403_I133_FCHGL72BBXX_L7_WHANIddyEAAORAAPEI-218_1.fq.gz 170403_I133_FCHGL72BBXX_L7_WHANIddyEAAORAAPEI-218_2.fq.gz 170403_I133_FCHGL72BBXX_L8_WHANIddyEAAORAAPEI-218_1.fq.gz 170403_I133_FCHGL72BBXX_L8_WHANIddyEAAORAAPEI-218_2.fq.gz	fastq fastq fastq fastq	36897471600.0	184487358.0	170403 I133 FCHGL72BBXX L7 WHANIddyEAAORAAPEI 218 1.fq.gz	0:100 1:100	A:9529576187;C:8838331599;G:9026934437;T:9496422810;N:6206567	100	100	9529576187	8838331599	9026934437	9496422810	6206567	SRX6694025	SRS5251307	SRA937931	Kunming Institute of Zoology, Chinese Academy of Sciences\|State Key Laboratory of Genetic Resources and Evol	Kunming Institute of Zoology, Chinese Academy of Sciences	2	0.95202	0.95483	0.0516	0.0503	0.70853	0.71224	0.50665	0.50669	100	100	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	trueseq	bulk	unknown	unknown	China	2019-08-11	Adult	Adult	Trunk	Surface Structure
53491	53491	SRR9945455	SRX6694024	SRS5251306	SRP218026	PRJNA557895	The origin and evolution of RNA editing in Metazoan	PRJNA557895	Other	We shed light on the origin and evolution of RNA editing in Metazoan by selected representative 22 species 18 of which were sequenced by ourselves.					Replicate 1 for D.rerio		isolate:Drer 1\|age:not collected\|dev stage:not collected\|sex:not collected\|tissue:whole body\|BioSampleModel:Model organism or animal	Strand specific RNA seq of Danio rerio rep1: whole body	DrerWHINSpmnpBABRAAPEI 219	DrerWHINSpmnpBABRAAPEI 219	Both genomic DNA and total RNA were extracted from the whole body of an adult. The strand specific RNA seq library was prepared using the TruSeq Stranded mRNA LT Sample Prep RS 122 2101 Illumina and the DNA library was constructed according to the standard protocol provided by Illumina San Diego CA USA. Paired end sequencing was performed for the two libraries on the HiSeq 4000 platform according to the manufacturer's instructions.		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP218026			160415_I136_FCH7MJKBBXX_L4_WHINSpmnpBABRAAPEI-219_1.fq.gz 160415_I136_FCH7MJKBBXX_L4_WHINSpmnpBABRAAPEI-219_2.fq.gz	fastq fastq	23885022200.0	119425111.0	160415 I136 FCH7MJKBBXX L4 WHINSpmnpBABRAAPEI 219 1.fq.gz	0:100 1:100	A:6260820125;C:5693318287;G:5662248033;T:6264079999;N:4555756	100	100	6260820125	5693318287	5662248033	6264079999	4555756	SRX6694024	SRS5251306	SRA937931	Kunming Institute of Zoology, Chinese Academy of Sciences\|State Key Laboratory of Genetic Resources and Evol	Kunming Institute of Zoology, Chinese Academy of Sciences	2	0.9539	0.95672	0.05875	0.05826	0.70782	0.70885	0.50825	0.51884	100	100	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	trueseq	bulk	unknown	unknown	China	2019-08-11	Adult	Adult	Trunk	Surface Structure
53492	53492	SRR9945460	SRX6694019	SRS5251305	SRP218026	PRJNA557895	The origin and evolution of RNA editing in Metazoan	PRJNA557895	Other	We shed light on the origin and evolution of RNA editing in Metazoan by selected representative 22 species 18 of which were sequenced by ourselves.					Replicate 3 for D.rerio		isolate:Drer 3\|age:not collected\|dev stage:not collected\|sex:not collected\|tissue:whole body\|BioSampleModel:Model organism or animal	Strand specific RNA seq of Danio rerio rep3: whole body	DrerWHANIddyEAAPRAAPEI 219	DrerWHANIddyEAAPRAAPEI 219	Both genomic DNA and total RNA were extracted from the whole body of an adult. The strand specific RNA seq library was prepared using the TruSeq Stranded mRNA LT Sample Prep RS 122 2101 Illumina and sequenced on the Illumina HiSeq 4000 platform according to the manufacturer's instructions. The DNA library was prepared using the MGIEasy DNA Library Prep Kit V1.1 MGI Tech and sequenced on the BGISEQ 500RS platform according to the manufacturer's instructions.		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP218026			170403_I133_FCHGL72BBXX_L6_WHANIddyEAAPRAAPEI-219_1.fq.gz 170403_I133_FCHGL72BBXX_L6_WHANIddyEAAPRAAPEI-219_2.fq.gz	fastq fastq	28065364200.0	140326821.0	170403 I133 FCHGL72BBXX L6 WHANIddyEAAPRAAPEI 219 1.fq.gz	0:100 1:100	A:7411372143;C:6577171300;G:6693925569;T:7377537100;N:5358088	100	100	7411372143	6577171300	6693925569	7377537100	5358088	SRX6694019	SRS5251305	SRA937931	Kunming Institute of Zoology, Chinese Academy of Sciences\|State Key Laboratory of Genetic Resources and Evol	Kunming Institute of Zoology, Chinese Academy of Sciences	2	0.94764	0.95274	0.06893	0.06709	0.68966	0.69154	0.49095	0.52264	100	100	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	trueseq	bulk	unknown	unknown	China	2019-08-11	Adult	Adult	Trunk	Surface Structure
61714	61714	SRR13015572	SRX9466664	SRS7678789	SRP291905	PRJNA674002	A to I RNA editing in zebrafish during development	PRJNA674002	Other	Here we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw unmapped sequencing output from stranded mRNA libraries can be found under this accession.				zebrafish embryos 72hpf body	single cross 2 72hpf body.rep2		strain:AB wildtype\|dev stage:72 hpf\|sex:unknown\|tissue:body\|embryos derived by cross:single cross 2\|biological replicate:replicate 2\|assay type:mRNA seq\|BioSampleModel:Model organism or animal	mRNA seq of whole zebrafish embryos wildtype AB 72 hpf body single cross 2 Rep2 lane2	PJ KH 026 2	PJ KH 026 2	stranded mRNA		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 2500	SRP291905			PJ_KH_026_S26_L004_R1_001.fastq.gz PJ_KH_026_S26_L004_R2_001.fastq.gz	fastq fastq	5649479642.0	21830080.0	PJ KH 026 S26 L004 R1 001.fastq.gz	0:151.00 1:151	A:1489202701;C:1340215887;G:1394009703;T:1424911003;N:1140348	151	151	1489202701	1340215887	1394009703	1424911003	1140348	SRX9466664	SRS7678789	SRA1153075	MDC Berlin\|BIMSB	MDC Berlin	2	0.94314	0.94507	0.06432	0.06324	0.73419	0.73756	0.43857	0.43838	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-11-10	Larval	Larval	Trunk	Surface Structure
61715	61715	SRR13015573	SRX9466663	SRS7678789	SRP291905	PRJNA674002	A to I RNA editing in zebrafish during development	PRJNA674002	Other	Here we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw unmapped sequencing output from stranded mRNA libraries can be found under this accession.				zebrafish embryos 72hpf body	single cross 2 72hpf body.rep2		strain:AB wildtype\|dev stage:72 hpf\|sex:unknown\|tissue:body\|embryos derived by cross:single cross 2\|biological replicate:replicate 2\|assay type:mRNA seq\|BioSampleModel:Model organism or animal	mRNA seq of whole zebrafish embryos wildtype AB 72 hpf body single cross 2 Rep2 lane1	PJ KH 026 1	PJ KH 026 1	stranded mRNA		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 2500	SRP291905			PJ_KH_026_S26_L003_R1_001.fastq.gz PJ_KH_026_S26_L003_R2_001.fastq.gz	fastq fastq	6480541594.0	21458747.0	PJ KH 026 S26 L003 R1 001.fastq.gz	0:151 1:151	A:1693165095;C:1547886416;G:1588645184;T:1649960022;N:884877	151	151	1693165095	1547886416	1588645184	1649960022	884877	SRX9466663	SRS7678789	SRA1153075	MDC Berlin\|BIMSB	MDC Berlin	2	0.94348	0.94571	0.06373	0.06239	0.70554	0.70938	0.41651	0.43674	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-11-10	Larval	Larval	Trunk	Surface Structure
61718	61718	SRR13015576	SRX9466660	SRS7678787	SRP291905	PRJNA674002	A to I RNA editing in zebrafish during development	PRJNA674002	Other	Here we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw unmapped sequencing output from stranded mRNA libraries can be found under this accession.				zebrafish embryos 72hpf body	single cross 2 72hpf body.rep1		strain:AB wildtype\|dev stage:72 hpf\|sex:unknown\|tissue:body\|embryos derived by cross:single cross 2\|biological replicate:replicate 1\|assay type:mRNA seq\|BioSampleModel:Model organism or animal	mRNA seq of whole zebrafish embryos wildtype AB 72 hpf body single cross 2 Rep2 lane2	PJ KH 024 2	PJ KH 024 2	stranded mRNA		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 2500	SRP291905			PJ_KH_024_S24_L004_R1_001.fastq.gz PJ_KH_024_S24_L004_R2_001.fastq.gz	fastq fastq	6944611404.0	22995402.0	PJ KH 024 S24 L004 R1 001.fastq.gz	0:151 1:151	A:1759014075;C:1717423563;G:1761324888;T:1705559501;N:1289377	151	151	1759014075	1717423563	1761324888	1705559501	1289377	SRX9466660	SRS7678787	SRA1153075	MDC Berlin\|BIMSB	MDC Berlin	2	0.94444	0.94481	0.02306	0.02202	0.80109	0.8043	0.44217	0.42367	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-11-10	Larval	Larval	Trunk	Surface Structure
61719	61719	SRR13015577	SRX9466659	SRS7678787	SRP291905	PRJNA674002	A to I RNA editing in zebrafish during development	PRJNA674002	Other	Here we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw unmapped sequencing output from stranded mRNA libraries can be found under this accession.				zebrafish embryos 72hpf body	single cross 2 72hpf body.rep1		strain:AB wildtype\|dev stage:72 hpf\|sex:unknown\|tissue:body\|embryos derived by cross:single cross 2\|biological replicate:replicate 1\|assay type:mRNA seq\|BioSampleModel:Model organism or animal	mRNA seq of whole zebrafish embryos wildtype AB 72 hpf body single cross 2 Rep2 lane1	PJ KH 024 1	PJ KH 024 1	stranded mRNA		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 2500	SRP291905			PJ_KH_024_S24_L003_R1_001.fastq.gz PJ_KH_024_S24_L003_R2_001.fastq.gz	fastq fastq	6904601538.0	22862919.0	PJ KH 024 S24 L003 R1 001.fastq.gz	0:151 1:151	A:1750292886;C:1705927568;G:1751892572;T:1695551341;N:937171	151	151	1750292886	1705927568	1751892572	1695551341	937171	SRX9466659	SRS7678787	SRA1153075	MDC Berlin\|BIMSB	MDC Berlin	2	0.94552	0.94651	0.02321	0.02249	0.8017	0.80474	0.45014	0.44702	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-11-10	Larval	Larval	Trunk	Surface Structure
61723	61723	SRR13015581	SRX9466655	SRS7678784	SRP291905	PRJNA674002	A to I RNA editing in zebrafish during development	PRJNA674002	Other	Here we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw unmapped sequencing output from stranded mRNA libraries can be found under this accession.				zebrafish embryos 72hpf body	single cross 1 72hpf body.rep2		strain:AB wildtype\|dev stage:72 hpf\|sex:unknown\|tissue:body\|embryos derived by cross:single cross 1\|biological replicate:replicate 2\|assay type:mRNA seq\|BioSampleModel:Model organism or animal	mRNA seq of whole zebrafish embryos wildtype AB 72 hpf body single cross 1 Rep2 lane2	PJ KH 022 2	PJ KH 022 2	stranded mRNA		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 2500	SRP291905			PJ_KH_022_S22_L004_R1_001.fastq.gz PJ_KH_022_S22_L004_R2_001.fastq.gz	fastq fastq	6540287462.0	21656581.0	PJ KH 022 S22 L004 R1 001.fastq.gz	0:151 1:151	A:1786208349;C:1481962568;G:1534306317;T:1736589429;N:1220799	151	151	1786208349	1481962568	1534306317	1736589429	1220799	SRX9466655	SRS7678784	SRA1153075	MDC Berlin\|BIMSB	MDC Berlin	2	0.94138	0.9425	0.12082	0.11747	0.65721	0.66042	0.46205	0.46186	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-11-10	Larval	Larval	Trunk	Surface Structure
61724	61724	SRR13015582	SRX9466654	SRS7678784	SRP291905	PRJNA674002	A to I RNA editing in zebrafish during development	PRJNA674002	Other	Here we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw unmapped sequencing output from stranded mRNA libraries can be found under this accession.				zebrafish embryos 72hpf body	single cross 1 72hpf body.rep2		strain:AB wildtype\|dev stage:72 hpf\|sex:unknown\|tissue:body\|embryos derived by cross:single cross 1\|biological replicate:replicate 2\|assay type:mRNA seq\|BioSampleModel:Model organism or animal	mRNA seq of whole zebrafish embryos wildtype AB 72 hpf body single cross 1 Rep2 lane1	PJ KH 022 1	PJ KH 022 1	stranded mRNA		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 2500	SRP291905			PJ_KH_022_S22_L003_R1_001.fastq.gz PJ_KH_022_S22_L003_R2_001.fastq.gz	fastq fastq	6474457200.0	21438600.0	PJ KH 022 S22 L003 R1 001.fastq.gz	0:151 1:151	A:1769622890;C:1465842475;G:1519843191;T:1718272687;N:875957	151	151	1769622890	1465842475	1519843191	1718272687	875957	SRX9466654	SRS7678784	SRA1153075	MDC Berlin\|BIMSB	MDC Berlin	2	0.94115	0.94343	0.1202	0.11881	0.65821	0.66117	0.46649	0.4638	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-11-10	Larval	Larval	Trunk	Surface Structure
61725	61725	SRR13015583	SRX9466653	SRS7678783	SRP291905	PRJNA674002	A to I RNA editing in zebrafish during development	PRJNA674002	Other	Here we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw unmapped sequencing output from stranded mRNA libraries can be found under this accession.				zebrafish embryos 72hpf body	single cross 1 72hpf body.rep1		strain:AB wildtype\|dev stage:72 hpf\|sex:unknown\|tissue:body\|embryos derived by cross:single cross 1\|biological replicate:replicate 1\|assay type:mRNA seq\|BioSampleModel:Model organism or animal	mRNA seq of whole zebrafish embryos wildtype AB 72 hpf body single cross 1 Rep1 lane2	PJ KH 021 2	PJ KH 021 2	stranded mRNA		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 2500	SRP291905			PJ_KH_021_S21_L004_R1_001.fastq.gz PJ_KH_021_S21_L004_R2_001.fastq.gz	fastq fastq	5800379610.0	19206555.0	PJ KH 021 S21 L004 R1 001.fastq.gz	0:151 1:151	A:1532344506;C:1366019833;G:1411818856;T:1489119439;N:1076976	151	151	1532344506	1366019833	1411818856	1489119439	1076976	SRX9466653	SRS7678783	SRA1153075	MDC Berlin\|BIMSB	MDC Berlin	2	0.95239	0.9534	0.07658	0.07531	0.71214	0.71498	0.42207	0.42549	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-11-10	Larval	Larval	Trunk	Surface Structure
61726	61726	SRR13015584	SRX9466652	SRS7678783	SRP291905	PRJNA674002	A to I RNA editing in zebrafish during development	PRJNA674002	Other	Here we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw unmapped sequencing output from stranded mRNA libraries can be found under this accession.				zebrafish embryos 72hpf body	single cross 1 72hpf body.rep1		strain:AB wildtype\|dev stage:72 hpf\|sex:unknown\|tissue:body\|embryos derived by cross:single cross 1\|biological replicate:replicate 1\|assay type:mRNA seq\|BioSampleModel:Model organism or animal	mRNA seq of whole zebrafish embryos wildtype AB 72 hpf body single cross 1 Rep1 lane1	PJ KH 021 1	PJ KH 021 1	stranded mRNA		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 2500	SRP291905			PJ_KH_021_S21_L003_R1_001.fastq.gz PJ_KH_021_S21_L003_R2_001.fastq.gz	fastq fastq	5697753064.0	18866732.0	PJ KH 021 S21 L003 R1 001.fastq.gz	0:151 1:151	A:1506316309;C:1340552139;G:1387834595;T:1462277778;N:772243	151	151	1506316309	1340552139	1387834595	1462277778	772243	SRX9466652	SRS7678783	SRA1153075	MDC Berlin\|BIMSB	MDC Berlin	2	0.95211	0.95438	0.07713	0.07541	0.71167	0.71601	0.43272	0.4257	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-11-10	Larval	Larval	Trunk	Surface Structure
61775	61775	SRR13015641	SRX9466595	SRS7678751	SRP291905	PRJNA674002	A to I RNA editing in zebrafish during development	PRJNA674002	Other	Here we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw unmapped sequencing output from stranded mRNA libraries can be found under this accession.				body tissue of parents from cross 2	male cross 2 adult body transcriptome		strain:AB wildtype\|dev stage:adult\|sex:male\|tissue:body\|embryos derived by cross:single cross 2\|assay type:mRNA seq\|BioSampleModel:Model organism or animal	mRNA seq body zebrafish male from single cross 2 lane2	PJ KH 036 2	PJ KH 036 2	stranded mRNA		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 2500	SRP291905			PJ_KH_036_S36_L004_R1_001.fastq.gz PJ_KH_036_S36_L004_R2_001.fastq.gz	fastq fastq	6478281728.0	21451264.0	PJ KH 036 S36 L004 R1 001.fastq.gz	0:151 1:151	A:1648862369;C:1591549903;G:1631652727;T:1605015568;N:1201161	151	151	1648862369	1591549903	1631652727	1605015568	1201161	SRX9466595	SRS7678751	SRA1153075	MDC Berlin\|BIMSB	MDC Berlin	2	0.9608	0.96246	0.02387	0.02325	0.78386	0.78608	0.5048	0.50714	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-11-10	Adult	Adult	Trunk	Surface Structure
61776	61776	SRR13015642	SRX9466594	SRS7678751	SRP291905	PRJNA674002	A to I RNA editing in zebrafish during development	PRJNA674002	Other	Here we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw unmapped sequencing output from stranded mRNA libraries can be found under this accession.				body tissue of parents from cross 2	male cross 2 adult body transcriptome		strain:AB wildtype\|dev stage:adult\|sex:male\|tissue:body\|embryos derived by cross:single cross 2\|assay type:mRNA seq\|BioSampleModel:Model organism or animal	mRNA seq body zebrafish male from single cross 2 lane1	PJ KH 036 1	PJ KH 036 1	stranded mRNA		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 2500	SRP291905			PJ_KH_036_S36_L003_R1_001.fastq.gz PJ_KH_036_S36_L003_R2_001.fastq.gz	fastq fastq	6439955814.0	21324357.0	PJ KH 036 S36 L003 R1 001.fastq.gz	0:151 1:151	A:1639459063;C:1581604775;G:1623817049;T:1594197994;N:876933	151	151	1639459063	1581604775	1623817049	1594197994	876933	SRX9466594	SRS7678751	SRA1153075	MDC Berlin\|BIMSB	MDC Berlin	2	0.96081	0.96284	0.02389	0.02312	0.78393	0.78713	0.50411	0.50535	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-11-10	Adult	Adult	Trunk	Surface Structure
61777	61777	SRR13015643	SRX9466593	SRS7678749	SRP291905	PRJNA674002	A to I RNA editing in zebrafish during development	PRJNA674002	Other	Here we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw unmapped sequencing output from stranded mRNA libraries can be found under this accession.				body tissue of parents from cross 2	female cross 2 adult body transcriptome		strain:AB wildtype\|dev stage:adult\|sex:female\|tissue:body\|embryos derived by cross:single cross 2\|assay type:mRNA seq\|BioSampleModel:Model organism or animal	mRNA seq body zebrafish female from single cross 2 lane2	PJ KH 035 2	PJ KH 035 2	stranded mRNA		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 2500	SRP291905			PJ_KH_035_S35_L004_R1_001.fastq.gz PJ_KH_035_S35_L004_R2_001.fastq.gz	fastq fastq	9422957190.0	31201845.0	PJ KH 035 S35 L004 R1 001.fastq.gz	0:151 1:151	A:2404649667;C:2302545232;G:2348124627;T:2365889998;N:1747666	151	151	2404649667	2302545232	2348124627	2365889998	1747666	SRX9466593	SRS7678749	SRA1153075	MDC Berlin\|BIMSB	MDC Berlin	2	0.94329	0.9456	0.02717	0.02634	0.71029	0.71451	0.46936	0.47075	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-11-10	Adult	Adult	Trunk	Surface Structure
61779	61779	SRR13015645	SRX9466591	SRS7678749	SRP291905	PRJNA674002	A to I RNA editing in zebrafish during development	PRJNA674002	Other	Here we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw unmapped sequencing output from stranded mRNA libraries can be found under this accession.				body tissue of parents from cross 2	female cross 2 adult body transcriptome		strain:AB wildtype\|dev stage:adult\|sex:female\|tissue:body\|embryos derived by cross:single cross 2\|assay type:mRNA seq\|BioSampleModel:Model organism or animal	mRNA seq body zebrafish female from single cross 2 lane1	PJ KH 035 1	PJ KH 035 1	stranded mRNA		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 2500	SRP291905			PJ_KH_035_S35_L003_R1_001.fastq.gz PJ_KH_035_S35_L003_R2_001.fastq.gz	fastq fastq	9366027774.0	31013337.0	PJ KH 035 S35 L003 R1 001.fastq.gz	0:151 1:151	A:2391627126;C:2287177887;G:2335767866;T:2350185771;N:1269124	151	151	2391627126	2287177887	2335767866	2350185771	1269124	SRX9466591	SRS7678749	SRA1153075	MDC Berlin\|BIMSB	MDC Berlin	2	0.94406	0.94614	0.02757	0.02656	0.70968	0.71366	0.468	0.46571	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-11-10	Adult	Adult	Trunk	Surface Structure
61780	61780	SRR13015646	SRX9466590	SRS7678748	SRP291905	PRJNA674002	A to I RNA editing in zebrafish during development	PRJNA674002	Other	Here we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw unmapped sequencing output from stranded mRNA libraries can be found under this accession.				body tissue of parents from cross 1	male cross 1 adult body transcriptome		strain:AB wildtype\|dev stage:adult\|sex:male\|tissue:body\|embryos derived by cross:single cross 1\|assay type:mRNA seq\|BioSampleModel:Model organism or animal	mRNA seq body zebrafish male from single cross 1 lane2	PJ KH 034 2	PJ KH 034 2	stranded mRNA		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 2500	SRP291905			PJ_KH_034_S34_L004_R1_001.fastq.gz PJ_KH_034_S34_L004_R2_001.fastq.gz	fastq fastq	7735112712.0	25612956.0	PJ KH 034 S34 L004 R1 001.fastq.gz	0:151 1:151	A:1974870696;C:1890581361;G:1943734005;T:1924490964;N:1435686	151	151	1974870696	1890581361	1943734005	1924490964	1435686	SRX9466590	SRS7678748	SRA1153075	MDC Berlin\|BIMSB	MDC Berlin	2	0.96448	0.966	0.03488	0.03342	0.72594	0.72985	0.49998	0.49893	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-11-10	Adult	Adult	Trunk	Surface Structure
61781	61781	SRR13015647	SRX9466589	SRS7678748	SRP291905	PRJNA674002	A to I RNA editing in zebrafish during development	PRJNA674002	Other	Here we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw unmapped sequencing output from stranded mRNA libraries can be found under this accession.				body tissue of parents from cross 1	male cross 1 adult body transcriptome		strain:AB wildtype\|dev stage:adult\|sex:male\|tissue:body\|embryos derived by cross:single cross 1\|assay type:mRNA seq\|BioSampleModel:Model organism or animal	mRNA seq body zebrafish male from single cross 1 lane1	PJ KH 034 1	PJ KH 034 1	stranded mRNA		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 2500	SRP291905			PJ_KH_034_S34_L003_R1_001.fastq.gz PJ_KH_034_S34_L003_R2_001.fastq.gz	fastq fastq	7674468092.0	25412146.0	PJ KH 034 S34 L003 R1 001.fastq.gz	0:151 1:151	A:1959722716;C:1874876878;G:1930984650;T:1907843658;N:1040190	151	151	1959722716	1874876878	1930984650	1907843658	1040190	SRX9466589	SRS7678748	SRA1153075	MDC Berlin\|BIMSB	MDC Berlin	2	0.96342	0.9657	0.03463	0.03334	0.72638	0.73196	0.49758	0.50234	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-11-10	Adult	Adult	Trunk	Surface Structure
61782	61782	SRR13015648	SRX9466588	SRS7678747	SRP291905	PRJNA674002	A to I RNA editing in zebrafish during development	PRJNA674002	Other	Here we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw unmapped sequencing output from stranded mRNA libraries can be found under this accession.				body tissue of parents from cross 1	female cross 1 adult body transcriptome		strain:AB wildtype\|dev stage:adult\|sex:female\|tissue:body\|embryos derived by cross:single cross 1\|assay type:mRNA seq\|BioSampleModel:Model organism or animal	mRNA seq body zebrafish female from single cross 1 lane2	PJ KH 033 2	PJ KH 033 2	stranded mRNA		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 2500	SRP291905			PJ_KH_033_S33_L004_R1_001.fastq.gz PJ_KH_033_S33_L004_R2_001.fastq.gz	fastq fastq	6190583240.0	20498620.0	PJ KH 033 S33 L004 R1 001.fastq.gz	0:151 1:151	A:1564701976;C:1533323455;G:1577799625;T:1513606117;N:1152067	151	151	1564701976	1533323455	1577799625	1513606117	1152067	SRX9466588	SRS7678747	SRA1153075	MDC Berlin\|BIMSB	MDC Berlin	2	0.95429	0.95588	0.02079	0.01982	0.75779	0.76065	0.44557	0.45493	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-11-10	Adult	Adult	Trunk	Surface Structure
61783	61783	SRR13015649	SRX9466587	SRS7678747	SRP291905	PRJNA674002	A to I RNA editing in zebrafish during development	PRJNA674002	Other	Here we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw unmapped sequencing output from stranded mRNA libraries can be found under this accession.				body tissue of parents from cross 1	female cross 1 adult body transcriptome		strain:AB wildtype\|dev stage:adult\|sex:female\|tissue:body\|embryos derived by cross:single cross 1\|assay type:mRNA seq\|BioSampleModel:Model organism or animal	mRNA seq body zebrafish female from single cross 1 lane1	PJ KH 033 1	PJ KH 033 1	stranded mRNA		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 2500	SRP291905			PJ_KH_033_S33_L003_R1_001.fastq.gz PJ_KH_033_S33_L003_R2_001.fastq.gz	fastq fastq	6121465406.0	20269753.0	PJ KH 033 S33 L003 R1 001.fastq.gz	0:151 1:151	A:1547607194;C:1515704901;G:1561793302;T:1495528175;N:831834	151	151	1547607194	1515704901	1561793302	1495528175	831834	SRX9466587	SRS7678747	SRA1153075	MDC Berlin\|BIMSB	MDC Berlin	2	0.9549	0.95671	0.02143	0.02065	0.75844	0.76138	0.49503	0.50077	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-11-10	Adult	Adult	Trunk	Surface Structure
66727	66727	SRR16494150	SRX12697149	SRS10647152	SRP342232	PRJNA772880	Bisphenol S affects zebrafish RNA seq analysis	PRJNA772880	Other	RNAseq data of 48 hpf zebrafish under bisphenol S			BPS1 3	RNA seq of zebrafish at 48 hpf in DMSO exposed	FKRO210105138 1A		isolate:AB type\|ecotype:AB type\|age:1 year\|dev stage:48 hpf\|sex:not applicable\|tissue:all body\|biomaterial provider:ecotoxicology of OUC\|ID:replicate=6\|BioSampleModel:Model organism or animal	RNA seq of zebrafish at 48 hpf : 1g/L bisohenol exposed	FRAS210076288 1r	FRAS210076288 1r	The first cDNA strand was synthesized in the m MulV reverse transcriptase system and then the RNA strand was degraded by RNaseH. The second strand of cDNA was synthesized in the DNA polymerase I system. AMPure XPbeads were used to screen the cDNA from 370 bp to 420 bp. PCR amplification was performed and PCR products were purified again with AMPure XP Beads to obtain the library.		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP342232			BPS1_3_1.fq.gz BPS1_3_2.fq.gz	fastq fastq	7167849600.0	23892832.0	BPS1 3 1.fq.gz	0:150 1:150	A:1918014367;C:1678861019;G:1677677143;T:1893251281;N:45790	150	150	1918014367	1678861019	1677677143	1893251281	45790	SRX12697149	SRS10647152	SRA1313827	Ocean University of China\|College of Marine Life Sciences	Ocean University of China	2	0.95027	0.95031	0.10013	0.10018	0.67789	0.67771	0.45849	0.45672	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2021-10-20	Multi-stage	Multi-stage	Trunk	Surface Structure
66728	66728	SRR16494151	SRX12697148	SRS10647151	SRP342232	PRJNA772880	Bisphenol S affects zebrafish RNA seq analysis	PRJNA772880	Other	RNAseq data of 48 hpf zebrafish under bisphenol S			BPS1 2	RNA seq of zebrafish at 48 hpf in DMSO exposed	FKRO210105137 1A		isolate:AB type\|ecotype:AB type\|age:1 year\|dev stage:48 hpf\|sex:not applicable\|tissue:all body\|biomaterial provider:ecotoxicology of OUC\|ID:replicate=5\|BioSampleModel:Model organism or animal	RNA seq of zebrafish at 48 hpf : 1g/L bisohenol exposed	FRAS210076287 1r	FRAS210076287 1r	The first cDNA strand was synthesized in the m MulV reverse transcriptase system and then the RNA strand was degraded by RNaseH. The second strand of cDNA was synthesized in the DNA polymerase I system. AMPure XPbeads were used to screen the cDNA from 370 bp to 420 bp. PCR amplification was performed and PCR products were purified again with AMPure XP Beads to obtain the library.		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP342232			BPS1_2_1.fq.gz BPS1_2_2.fq.gz	fastq fastq	7612619700.0	25375399.0	BPS1 2 1.fq.gz	0:150 1:150	A:2031729658;C:1792968404;G:1787711984;T:1999989075;N:220579	150	150	2031729658	1792968404	1787711984	1999989075	220579	SRX12697148	SRS10647151	SRA1313827	Ocean University of China\|College of Marine Life Sciences	Ocean University of China	2	0.95101	0.95113	0.09524	0.09456	0.68274	0.68318	0.45837	0.45319	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2021-10-20	Multi-stage	Multi-stage	Trunk	Surface Structure
66729	66729	SRR16494152	SRX12697147	SRS10647150	SRP342232	PRJNA772880	Bisphenol S affects zebrafish RNA seq analysis	PRJNA772880	Other	RNAseq data of 48 hpf zebrafish under bisphenol S			BPS1 1	RNA seq of zebrafish at 48 hpf in DMSO exposed	FKRO210105136 1A		isolate:AB type\|ecotype:AB type\|age:1 year\|dev stage:48 hpf\|sex:not applicable\|tissue:all body\|biomaterial provider:ecotoxicology of OUC\|ID:replicate=4\|BioSampleModel:Model organism or animal	RNA seq of zebrafish at 48 hpf : 1g/L bisohenol exposed	FRAS210076286 1r	FRAS210076286 1r	The first cDNA strand was synthesized in the m MulV reverse transcriptase system and then the RNA strand was degraded by RNaseH. The second strand of cDNA was synthesized in the DNA polymerase I system. AMPure XPbeads were used to screen the cDNA from 370 bp to 420 bp. PCR amplification was performed and PCR products were purified again with AMPure XP Beads to obtain the library.		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP342232			BPS1_1_1.fq.gz BPS1_1_2.fq.gz	fastq fastq	6244935600.0	20816452.0	BPS1 1 1.fq.gz	0:150 1:150	A:1675323145;C:1456410435;G:1458522814;T:1654433698;N:245508	150	150	1675323145	1456410435	1458522814	1654433698	245508	SRX12697147	SRS10647150	SRA1313827	Ocean University of China\|College of Marine Life Sciences	Ocean University of China	2	0.94597	0.94597	0.10252	0.1028	0.67913	0.67963	0.4519	0.45424	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2021-10-20	Multi-stage	Multi-stage	Trunk	Surface Structure
66730	66730	SRR16494153	SRX12697146	SRS10647149	SRP342232	PRJNA772880	Bisphenol S affects zebrafish RNA seq analysis	PRJNA772880	Other	RNAseq data of 48 hpf zebrafish under bisphenol S			DMSO 3	RNA seq of zebrafish at 48 hpf in DMSO exposed	FKRO210105135 1A		isolate:AB type\|ecotype:AB type\|age:1 year\|dev stage:48 hpf\|sex:not applicable\|tissue:all body\|biomaterial provider:ecotoxicology of OUC\|ID:replicate=3\|BioSampleModel:Model organism or animal	RNA seq of zebrafish at 48 hpf : DMSO exposed	FRAS210076285 1r	FRAS210076285 1r	The first cDNA strand was synthesized in the m MulV reverse transcriptase system and then the RNA strand was degraded by RNaseH. The second strand of cDNA was synthesized in the DNA polymerase I system. AMPure XPbeads were used to screen the cDNA from 370 bp to 420 bp. PCR amplification was performed and PCR products were purified again with AMPure XP Beads to obtain the library.		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP342232			DMSO_3_1.fq.gz DMSO_3_2.fq.gz	fastq fastq	6977113200.0	23257044.0	DMSO 3 1.fq.gz	0:150 1:150	A:1886115659;C:1619020544;G:1612888187;T:1858808303;N:280507	150	150	1886115659	1619020544	1612888187	1858808303	280507	SRX12697146	SRS10647149	SRA1313827	Ocean University of China\|College of Marine Life Sciences	Ocean University of China	2	0.94817	0.94818	0.10571	0.10532	0.67957	0.6802	0.46251	0.46156	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2021-10-20	Multi-stage	Multi-stage	Trunk	Surface Structure
66731	66731	SRR16494154	SRX12697145	SRS10647148	SRP342232	PRJNA772880	Bisphenol S affects zebrafish RNA seq analysis	PRJNA772880	Other	RNAseq data of 48 hpf zebrafish under bisphenol S			DMSO 2	RNA seq of zebrafish at 48 hpf in DMSO exposed	FKRO210105134 1A		isolate:AB type\|ecotype:AB type\|age:1 year\|dev stage:48 hpf\|sex:not applicable\|tissue:all body\|biomaterial provider:ecotoxicology of OUC\|ID:replicate=2\|BioSampleModel:Model organism or animal	RNA seq of zebrafish at 48 hpf : DMSO exposed	FRAS210076284 1r	FRAS210076284 1r	The first cDNA strand was synthesized in the m MulV reverse transcriptase system and then the RNA strand was degraded by RNaseH. The second strand of cDNA was synthesized in the DNA polymerase I system. AMPure XPbeads were used to screen the cDNA from 370 bp to 420 bp. PCR amplification was performed and PCR products were purified again with AMPure XP Beads to obtain the library.		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP342232			DMSO_2_1.fq.gz DMSO_2_2.fq.gz	fastq fastq	6084760800.0	20282536.0	DMSO 2 1.fq.gz	0:150 1:150	A:1662685386;C:1398235089;G:1387347206;T:1636254391;N:238728	150	150	1662685386	1398235089	1387347206	1636254391	238728	SRX12697145	SRS10647148	SRA1313827	Ocean University of China\|College of Marine Life Sciences	Ocean University of China	2	0.94513	0.94552	0.12007	0.12016	0.67732	0.67698	0.46577	0.46663	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2021-10-20	Multi-stage	Multi-stage	Trunk	Surface Structure
66732	66732	SRR16494155	SRX12697144	SRS10647147	SRP342232	PRJNA772880	Bisphenol S affects zebrafish RNA seq analysis	PRJNA772880	Other	RNAseq data of 48 hpf zebrafish under bisphenol S			DMSO 1	RNA seq of zebrafish at 48 hpf in DMSO exposed	FKRO210105133 1A		isolate:AB type\|ecotype:AB type\|age:1 year\|dev stage:48 hpf\|sex:not applicable\|tissue:all body\|biomaterial provider:ecotoxicology of OUC\|ID:replicate=1\|BioSampleModel:Model organism or animal	RNA seq of zebrafish at 48 hpf : DMSO exposed	FRAS210076283 1r	FRAS210076283 1r	The first cDNA strand was synthesized in the m MulV reverse transcriptase system and then the RNA strand was degraded by RNaseH. The second strand of cDNA was synthesized in the DNA polymerase I system. AMPure XPbeads were used to screen the cDNA from 370 bp to 420 bp. PCR amplification was performed and PCR products were purified again with AMPure XP Beads to obtain the library.		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP342232			DMSO_1_1.fq.gz DMSO_1_2.fq.gz	fastq fastq	7313502000.0	24378340.0	DMSO 1 1.fq.gz	0:150 1:150	A:1980180330;C:1695610385;G:1686058673;T:1951359106;N:293506	150	150	1980180330	1695610385	1686058673	1951359106	293506	SRX12697144	SRS10647147	SRA1313827	Ocean University of China\|College of Marine Life Sciences	Ocean University of China	2	0.94872	0.94801	0.10719	0.10597	0.68221	0.68162	0.47058	0.46764	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2021-10-20	Multi-stage	Multi-stage	Trunk	Surface Structure
71095	71095	SRR21672023	SRX17670438	SRS15202599	SRP398597	PRJNA874604	Danio rerio Raw sequence reads	PRJNA874604	Whole Genome Sequencing	RNA seq data of the whole body of WT leg1a mu leg1b mu and leg1 double MZ mutant upf1 mu upf1;leg1a dm upf3a mu upf3a;leg1a dm at both 3dpf and 5dpf. liver from wt leg1a mu upf3a mu upf3a;leg1a dm at 5dpf were examined using ChIP Seq H3K4me3					RNA seq leg1 dm 3dpf 1		isolate:10\|breed:AB ZFIN ID: ZDB GENO 960809 7\|dev stage:3dpf\|sex:not collected\|tissue:whole body\|BioSampleModel:Model organism or animal	RNA seq leg1 dm 3dpf 1	RNA seq leg1 dm 3dpf 1	RNA seq leg1 dm 3dpf 1	common method		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP398597			DD1_R1.fq.gz DD1_R2.fq.gz	fastq fastq	6812333100.0	22707777.0	DD1 R1.fq.gz	0:150 1:150	A:1797279858;C:1623686984;G:1616998244;T:1774163804;N:204210	150	150	1797279858	1623686984	1616998244	1774163804	204210	SRX17670438	SRS15202599	SRA1503252	Zhejiang University\|College of Animal Sciences	Zhejiang University	2	0.9569	0.95708	0.0648	0.0654	0.66334	0.66342	0.47266	0.47692	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2022-09-22	Larval	Larval	Trunk	Surface Structure
71096	71096	SRR21672024	SRX17670437	SRS15202598	SRP398597	PRJNA874604	Danio rerio Raw sequence reads	PRJNA874604	Whole Genome Sequencing	RNA seq data of the whole body of WT leg1a mu leg1b mu and leg1 double MZ mutant upf1 mu upf1;leg1a dm upf3a mu upf3a;leg1a dm at both 3dpf and 5dpf. liver from wt leg1a mu upf3a mu upf3a;leg1a dm at 5dpf were examined using ChIP Seq H3K4me3					RNA seq leg1b mu 3dpf 3		isolate:9\|breed:AB ZFIN ID: ZDB GENO 960809 7\|dev stage:3dpf\|sex:not collected\|tissue:whole body\|BioSampleModel:Model organism or animal	RNA seq leg1b mu 3dpf 3	RNA seq leg1b mu 3dpf 3	RNA seq leg1b mu 3dpf 3	common method		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP398597			BB3_R1.fq.gz BB3_R2.fq.gz	fastq fastq	6614829600.0	22049432.0	BB3 R1.fq.gz	0:150 1:150	A:1723610437;C:1591579846;G:1593658632;T:1705402749;N:577936	150	150	1723610437	1591579846	1593658632	1705402749	577936	SRX17670437	SRS15202598	SRA1503252	Zhejiang University\|College of Animal Sciences	Zhejiang University	2	0.95844	0.95801	0.05605	0.05551	0.66734	0.66626	0.46977	0.47197	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2022-09-22	Larval	Larval	Trunk	Surface Structure
71097	71097	SRR21672033	SRX17670428	SRS15202589	SRP398597	PRJNA874604	Danio rerio Raw sequence reads	PRJNA874604	Whole Genome Sequencing	RNA seq data of the whole body of WT leg1a mu leg1b mu and leg1 double MZ mutant upf1 mu upf1;leg1a dm upf3a mu upf3a;leg1a dm at both 3dpf and 5dpf. liver from wt leg1a mu upf3a mu upf3a;leg1a dm at 5dpf were examined using ChIP Seq H3K4me3					RNA seq upf1;leg1a dm 5dpf 3		isolate:71\|breed:not collected\|dev stage:5dpf\|sex:not collected\|tissue:whole body\|BioSampleModel:Model organism or animal	RNA seq upf1;leg1a dm 5dpf 3	RNA seq upf1;leg1a dm 5dpf 3	RNA seq upf1;leg1a dm 5dpf 3	common method		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP398597			5dpf_EEAA3_R2.fq.gz 5dpf_EEAA3_R1.fq.gz	fastq fastq	6664227900.0	22214093.0	5dpf EEAA3 R1.fq.gz	0:150 1:150	A:1787808213;C:1553130317;G:1552369457;T:1770736155;N:183758	150	150	1787808213	1553130317	1552369457	1770736155	183758	SRX17670428	SRS15202589	SRA1503252	Zhejiang University\|College of Animal Sciences	Zhejiang University	2	0.95439	0.9535	0.09218	0.09219	0.6491	0.6495	0.47627	0.47518	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2022-09-22	Larval	Larval	Trunk	Surface Structure
71098	71098	SRR21672034	SRX17670427	SRS15202587	SRP398597	PRJNA874604	Danio rerio Raw sequence reads	PRJNA874604	Whole Genome Sequencing	RNA seq data of the whole body of WT leg1a mu leg1b mu and leg1 double MZ mutant upf1 mu upf1;leg1a dm upf3a mu upf3a;leg1a dm at both 3dpf and 5dpf. liver from wt leg1a mu upf3a mu upf3a;leg1a dm at 5dpf were examined using ChIP Seq H3K4me3					RNA seq leg1b mu 3dpf 2		isolate:8\|breed:AB ZFIN ID: ZDB GENO 960809 7\|dev stage:3dpf\|sex:not collected\|tissue:whole body\|BioSampleModel:Model organism or animal	RNA seq leg1b mu 3dpf 2	RNA seq leg1b mu 3dpf 2	RNA seq leg1b mu 3dpf 2	common method		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP398597			BB2_R2.fq.gz BB2_R1.fq.gz	fastq fastq	6490639500.0	21635465.0	BB2 R1.fq.gz	0:150 1:150	A:1694160906;C:1561952918;G:1561183270;T:1672695117;N:647289	150	150	1694160906	1561952918	1561183270	1672695117	647289	SRX17670427	SRS15202587	SRA1503252	Zhejiang University\|College of Animal Sciences	Zhejiang University	2	0.95637	0.95677	0.06175	0.06228	0.669	0.66872	0.47159	0.47367	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2022-09-22	Larval	Larval	Trunk	Surface Structure
71099	71099	SRR21672035	SRX17670426	SRS15202588	SRP398597	PRJNA874604	Danio rerio Raw sequence reads	PRJNA874604	Whole Genome Sequencing	RNA seq data of the whole body of WT leg1a mu leg1b mu and leg1 double MZ mutant upf1 mu upf1;leg1a dm upf3a mu upf3a;leg1a dm at both 3dpf and 5dpf. liver from wt leg1a mu upf3a mu upf3a;leg1a dm at 5dpf were examined using ChIP Seq H3K4me3					RNA seq upf1;leg1a dm 5dpf 2		isolate:70\|breed:not collected\|dev stage:5dpf\|sex:not collected\|tissue:whole body\|BioSampleModel:Model organism or animal	RNA seq upf1;leg1a dm 5dpf 2	RNA seq upf1;leg1a dm 5dpf 2	RNA seq upf1;leg1a dm 5dpf 2	common method		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP398597			5dpf_EEAA2_R1.fq.gz 5dpf_EEAA2_R2.fq.gz	fastq fastq	6562613100.0	21875377.0	5dpf EEAA2 R1.fq.gz	0:150 1:150	A:1769063491;C:1520150890;G:1520499745;T:1752818570;N:80404	150	150	1769063491	1520150890	1520499745	1752818570	80404	SRX17670426	SRS15202588	SRA1503252	Zhejiang University\|College of Animal Sciences	Zhejiang University	2	0.94926	0.94917	0.10629	0.10602	0.6449	0.64488	0.48408	0.4678	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2022-09-22	Larval	Larval	Trunk	Surface Structure
71100	71100	SRR21672036	SRX17670425	SRS15202586	SRP398597	PRJNA874604	Danio rerio Raw sequence reads	PRJNA874604	Whole Genome Sequencing	RNA seq data of the whole body of WT leg1a mu leg1b mu and leg1 double MZ mutant upf1 mu upf1;leg1a dm upf3a mu upf3a;leg1a dm at both 3dpf and 5dpf. liver from wt leg1a mu upf3a mu upf3a;leg1a dm at 5dpf were examined using ChIP Seq H3K4me3					RNA seq upf1;leg1a dm 5dpf 1		isolate:69\|breed:not collected\|dev stage:5dpf\|sex:not collected\|tissue:whole body\|BioSampleModel:Model organism or animal	RNA seq upf1;leg1a dm 5dpf 1	RNA seq upf1;leg1a dm 5dpf 1	RNA seq upf1;leg1a dm 5dpf 1	common method		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP398597			5dpf_EEAA1_R1.fq.gz 5dpf_EEAA1_R2.fq.gz	fastq fastq	6462701100.0	21542337.0	5dpf EEAA1 R1.fq.gz	0:150 1:150	A:1747245773;C:1492360115;G:1492600215;T:1730414789;N:80208	150	150	1747245773	1492360115	1492600215	1730414789	80208	SRX17670425	SRS15202586	SRA1503252	Zhejiang University\|College of Animal Sciences	Zhejiang University	2	0.94949	0.9494	0.09951	0.09974	0.64898	0.6491	0.48305	0.48586	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2022-09-22	Larval	Larval	Trunk	Surface Structure
71101	71101	SRR21672037	SRX17670424	SRS15202585	SRP398597	PRJNA874604	Danio rerio Raw sequence reads	PRJNA874604	Whole Genome Sequencing	RNA seq data of the whole body of WT leg1a mu leg1b mu and leg1 double MZ mutant upf1 mu upf1;leg1a dm upf3a mu upf3a;leg1a dm at both 3dpf and 5dpf. liver from wt leg1a mu upf3a mu upf3a;leg1a dm at 5dpf were examined using ChIP Seq H3K4me3					RNA seq upf1 mu 5dpf 3		isolate:68\|breed:Tubingen\|dev stage:5dpf\|sex:not collected\|tissue:whole body\|BioSampleModel:Model organism or animal	RNA seq upf1 mu 5dpf 3	RNA seq upf1 mu 5dpf 3	RNA seq upf1 mu 5dpf 3	common method		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP398597			5dpf_EE3_R1.fq.gz 5dpf_EE3_R2.fq.gz	fastq fastq	6851648100.0	22838827.0	5dpf EE3 R1.fq.gz	0:150 1:150	A:1875732348;C:1560055234;G:1555135735;T:1860640563;N:84220	150	150	1875732348	1560055234	1555135735	1860640563	84220	SRX17670424	SRS15202585	SRA1503252	Zhejiang University\|College of Animal Sciences	Zhejiang University	2	0.94942	0.95039	0.11856	0.11863	0.64368	0.64244	0.47528	0.45639	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2022-09-22	Larval	Larval	Trunk	Surface Structure
71102	71102	SRR21672038	SRX17670423	SRS15202584	SRP398597	PRJNA874604	Danio rerio Raw sequence reads	PRJNA874604	Whole Genome Sequencing	RNA seq data of the whole body of WT leg1a mu leg1b mu and leg1 double MZ mutant upf1 mu upf1;leg1a dm upf3a mu upf3a;leg1a dm at both 3dpf and 5dpf. liver from wt leg1a mu upf3a mu upf3a;leg1a dm at 5dpf were examined using ChIP Seq H3K4me3					RNA seq upf1 mu 5dpf 2		isolate:67\|breed:Tubingen\|dev stage:5dpf\|sex:not collected\|tissue:whole body\|BioSampleModel:Model organism or animal	RNA seq upf1 mu 5dpf 2	RNA seq upf1 mu 5dpf 2	RNA seq upf1 mu 5dpf 2	common method		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP398597			5dpf_EE2_R1.fq.gz 5dpf_EE2_R2.fq.gz	fastq fastq	6893388900.0	22977963.0	5dpf EE2 R1.fq.gz	0:150 1:150	A:1910137931;C:1547085977;G:1542023566;T:1894055315;N:86111	150	150	1910137931	1547085977	1542023566	1894055315	86111	SRX17670423	SRS15202584	SRA1503252	Zhejiang University\|College of Animal Sciences	Zhejiang University	2	0.94459	0.94464	0.14708	0.14695	0.63709	0.63733	0.47774	0.47803	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2022-09-22	Larval	Larval	Trunk	Surface Structure
71103	71103	SRR21672039	SRX17670422	SRS15202583	SRP398597	PRJNA874604	Danio rerio Raw sequence reads	PRJNA874604	Whole Genome Sequencing	RNA seq data of the whole body of WT leg1a mu leg1b mu and leg1 double MZ mutant upf1 mu upf1;leg1a dm upf3a mu upf3a;leg1a dm at both 3dpf and 5dpf. liver from wt leg1a mu upf3a mu upf3a;leg1a dm at 5dpf were examined using ChIP Seq H3K4me3					RNA seq upf1 mu 5dpf 1		isolate:66\|breed:Tubingen\|dev stage:5dpf\|sex:not collected\|tissue:whole body\|BioSampleModel:Model organism or animal	RNA seq upf1 mu 5dpf 1	RNA seq upf1 mu 5dpf 1	RNA seq upf1 mu 5dpf 1	common method		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP398597			5dpf_EE1_R1.fq.gz 5dpf_EE1_R2.fq.gz	fastq fastq	6757104900.0	22523683.0	5dpf EE1 R1.fq.gz	0:150 1:150	A:1857130665;C:1531022649;G:1527659318;T:1841207917;N:84351	150	150	1857130665	1531022649	1527659318	1841207917	84351	SRX17670422	SRS15202583	SRA1503252	Zhejiang University\|College of Animal Sciences	Zhejiang University	2	0.94669	0.94656	0.12747	0.12717	0.637	0.63924	0.48411	0.48621	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2022-09-22	Larval	Larval	Trunk	Surface Structure
71104	71104	SRR21672040	SRX17670421	SRS15202582	SRP398597	PRJNA874604	Danio rerio Raw sequence reads	PRJNA874604	Whole Genome Sequencing	RNA seq data of the whole body of WT leg1a mu leg1b mu and leg1 double MZ mutant upf1 mu upf1;leg1a dm upf3a mu upf3a;leg1a dm at both 3dpf and 5dpf. liver from wt leg1a mu upf3a mu upf3a;leg1a dm at 5dpf were examined using ChIP Seq H3K4me3					RNA seq leg1a mu 5dpf 9		isolate:65\|breed:AB ZFIN ID: ZDB GENO 960809 7\|dev stage:5dpf\|sex:not collected\|tissue:whole body\|BioSampleModel:Model organism or animal	RNA seq leg1a mu 5dpf 9	RNA seq leg1a mu 5dpf 9	RNA seq leg1a mu 5dpf 9	common method		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP398597			5dpf_AA9_R2.fq.gz 5dpf_AA9_R1.fq.gz	fastq fastq	6210656100.0	20702187.0	5dpf AA9 R1.fq.gz	0:150 1:150	A:1680131866;C:1433330371;G:1428618760;T:1668497996;N:77107	150	150	1680131866	1433330371	1428618760	1668497996	77107	SRX17670421	SRS15202582	SRA1503252	Zhejiang University\|College of Animal Sciences	Zhejiang University	2	0.9527	0.95209	0.09784	0.09761	0.64985	0.6507	0.47517	0.47512	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2022-09-22	Larval	Larval	Trunk	Surface Structure
71105	71105	SRR21672041	SRX17670420	SRS15202581	SRP398597	PRJNA874604	Danio rerio Raw sequence reads	PRJNA874604	Whole Genome Sequencing	RNA seq data of the whole body of WT leg1a mu leg1b mu and leg1 double MZ mutant upf1 mu upf1;leg1a dm upf3a mu upf3a;leg1a dm at both 3dpf and 5dpf. liver from wt leg1a mu upf3a mu upf3a;leg1a dm at 5dpf were examined using ChIP Seq H3K4me3					RNA seq leg1a mu 5dpf 8		isolate:64\|breed:AB ZFIN ID: ZDB GENO 960809 7\|dev stage:5dpf\|sex:not collected\|tissue:whole body\|BioSampleModel:Model organism or animal	RNA seq leg1a mu 5dpf 8	RNA seq leg1a mu 5dpf 8	RNA seq leg1a mu 5dpf 8	common method		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP398597			5dpf_AA8_R1.fq.gz 5dpf_AA8_R2.fq.gz	fastq fastq	6047799600.0	20159332.0	5dpf AA8 R1.fq.gz	0:150 1:150	A:1624784698;C:1404798720;G:1404940636;T:1613200514;N:75032	150	150	1624784698	1404798720	1404940636	1613200514	75032	SRX17670420	SRS15202581	SRA1503252	Zhejiang University\|College of Animal Sciences	Zhejiang University	2	0.95369	0.95253	0.10549	0.10566	0.64851	0.64865	0.48377	0.48415	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2022-09-22	Larval	Larval	Trunk	Surface Structure
71106	71106	SRR21672042	SRX17670419	SRS15202580	SRP398597	PRJNA874604	Danio rerio Raw sequence reads	PRJNA874604	Whole Genome Sequencing	RNA seq data of the whole body of WT leg1a mu leg1b mu and leg1 double MZ mutant upf1 mu upf1;leg1a dm upf3a mu upf3a;leg1a dm at both 3dpf and 5dpf. liver from wt leg1a mu upf3a mu upf3a;leg1a dm at 5dpf were examined using ChIP Seq H3K4me3					RNA seq leg1a mu 5dpf 7		isolate:63\|breed:AB ZFIN ID: ZDB GENO 960809 7\|dev stage:5dpf\|sex:not collected\|tissue:whole body\|BioSampleModel:Model organism or animal	RNA seq leg1a mu 5dpf 7	RNA seq leg1a mu 5dpf 7	RNA seq leg1a mu 5dpf 7	common method		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP398597			5dpf_AA7_R1.fq.gz 5dpf_AA7_R2.fq.gz	fastq fastq	6123017400.0	20410058.0	5dpf AA7 R1.fq.gz	0:150 1:150	A:1655302300;C:1412950591;G:1411238278;T:1643450787;N:75444	150	150	1655302300	1412950591	1411238278	1643450787	75444	SRX17670419	SRS15202580	SRA1503252	Zhejiang University\|College of Animal Sciences	Zhejiang University	2	0.94799	0.94827	0.12487	0.12517	0.65013	0.65048	0.48089	0.47757	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2022-09-22	Larval	Larval	Trunk	Surface Structure
71107	71107	SRR21672043	SRX17670418	SRS15202579	SRP398597	PRJNA874604	Danio rerio Raw sequence reads	PRJNA874604	Whole Genome Sequencing	RNA seq data of the whole body of WT leg1a mu leg1b mu and leg1 double MZ mutant upf1 mu upf1;leg1a dm upf3a mu upf3a;leg1a dm at both 3dpf and 5dpf. liver from wt leg1a mu upf3a mu upf3a;leg1a dm at 5dpf were examined using ChIP Seq H3K4me3					RNA seq WT 5dpf 9		isolate:62\|breed:AB ZFIN ID: ZDB GENO 960809 7\|dev stage:5dpf\|sex:not collected\|tissue:whole body\|BioSampleModel:Model organism or animal	RNA seq WT 5dpf 9	RNA seq WT 5dpf 9	RNA seq WT 5dpf 9	common method		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP398597			5dpf_AB9_R2.fq.gz 5dpf_AB9_R1.fq.gz	fastq fastq	6804658200.0	22682194.0	5dpf AB9 R1.fq.gz	0:150 1:150	A:1836965169;C:1571869431;G:1575235708;T:1820528324;N:59568	150	150	1836965169	1571869431	1575235708	1820528324	59568	SRX17670418	SRS15202579	SRA1503252	Zhejiang University\|College of Animal Sciences	Zhejiang University	2	0.9505	0.9499	0.11355	0.1131	0.64824	0.64802	0.46293	0.46244	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2022-09-22	Larval	Larval	Trunk	Surface Structure
71108	71108	SRR21672044	SRX17670417	SRS15202578	SRP398597	PRJNA874604	Danio rerio Raw sequence reads	PRJNA874604	Whole Genome Sequencing	RNA seq data of the whole body of WT leg1a mu leg1b mu and leg1 double MZ mutant upf1 mu upf1;leg1a dm upf3a mu upf3a;leg1a dm at both 3dpf and 5dpf. liver from wt leg1a mu upf3a mu upf3a;leg1a dm at 5dpf were examined using ChIP Seq H3K4me3					RNA seq WT 5dpf 8		isolate:61\|breed:AB ZFIN ID: ZDB GENO 960809 7\|dev stage:5dpf\|sex:not collected\|tissue:whole body\|BioSampleModel:Model organism or animal	RNA seq WT 5dpf 8	RNA seq WT 5dpf 8	RNA seq WT 5dpf 8	common method		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP398597			5dpf_AB8_R2.fq.gz 5dpf_AB8_R1.fq.gz	fastq fastq	6989947500.0	23299825.0	5dpf AB8 R1.fq.gz	0:150 1:150	A:1905173014;C:1595918859;G:1596171802;T:1892598059;N:85766	150	150	1905173014	1595918859	1596171802	1892598059	85766	SRX17670417	SRS15202578	SRA1503252	Zhejiang University\|College of Animal Sciences	Zhejiang University	2	0.95243	0.95171	0.1188	0.1184	0.65437	0.65525	0.47605	0.47218	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2022-09-22	Larval	Larval	Trunk	Surface Structure
71109	71109	SRR21672045	SRX17670416	SRS15202577	SRP398597	PRJNA874604	Danio rerio Raw sequence reads	PRJNA874604	Whole Genome Sequencing	RNA seq data of the whole body of WT leg1a mu leg1b mu and leg1 double MZ mutant upf1 mu upf1;leg1a dm upf3a mu upf3a;leg1a dm at both 3dpf and 5dpf. liver from wt leg1a mu upf3a mu upf3a;leg1a dm at 5dpf were examined using ChIP Seq H3K4me3					RNA seq leg1b mu 3dpf 1		isolate:7\|breed:AB ZFIN ID: ZDB GENO 960809 7\|dev stage:3dpf\|sex:not collected\|tissue:whole body\|BioSampleModel:Model organism or animal	RNA seq leg1b mu 3dpf 1	RNA seq leg1b mu 3dpf 1	RNA seq leg1b mu 3dpf 1	common method		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP398597			BB1_R1.fq.gz BB1_R2.fq.gz	fastq fastq	6576177900.0	21920593.0	BB1 R1.fq.gz	0:150 1:150	A:1739519822;C:1563077853;G:1557462532;T:1715455932;N:661761	150	150	1739519822	1563077853	1557462532	1715455932	661761	SRX17670416	SRS15202577	SRA1503252	Zhejiang University\|College of Animal Sciences	Zhejiang University	2	0.95377	0.95319	0.0709	0.07136	0.66567	0.66549	0.47366	0.47535	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2022-09-22	Larval	Larval	Trunk	Surface Structure
71110	71110	SRR21672046	SRX17670415	SRS15202576	SRP398597	PRJNA874604	Danio rerio Raw sequence reads	PRJNA874604	Whole Genome Sequencing	RNA seq data of the whole body of WT leg1a mu leg1b mu and leg1 double MZ mutant upf1 mu upf1;leg1a dm upf3a mu upf3a;leg1a dm at both 3dpf and 5dpf. liver from wt leg1a mu upf3a mu upf3a;leg1a dm at 5dpf were examined using ChIP Seq H3K4me3					RNA seq WT 5dpf 7		isolate:60\|breed:AB ZFIN ID: ZDB GENO 960809 7\|dev stage:5dpf\|sex:not collected\|tissue:whole body\|BioSampleModel:Model organism or animal	RNA seq WT 5dpf 7	RNA seq WT 5dpf 7	RNA seq WT 5dpf 7	common method		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP398597			5dpf_AB7_R1.fq.gz 5dpf_AB7_R2.fq.gz	fastq fastq	6920492400.0	23068308.0	5dpf AB7 R1.fq.gz	0:150 1:150	A:1890558736;C:1577660807;G:1575032701;T:1877179217;N:60939	150	150	1890558736	1577660807	1575032701	1877179217	60939	SRX17670415	SRS15202576	SRA1503252	Zhejiang University\|College of Animal Sciences	Zhejiang University	2	0.94917	0.94897	0.11998	0.11974	0.6505	0.65159	0.46894	0.47098	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2022-09-22	Larval	Larval	Trunk	Surface Structure
71111	71111	SRR21672047	SRX17670414	SRS15202575	SRP398597	PRJNA874604	Danio rerio Raw sequence reads	PRJNA874604	Whole Genome Sequencing	RNA seq data of the whole body of WT leg1a mu leg1b mu and leg1 double MZ mutant upf1 mu upf1;leg1a dm upf3a mu upf3a;leg1a dm at both 3dpf and 5dpf. liver from wt leg1a mu upf3a mu upf3a;leg1a dm at 5dpf were examined using ChIP Seq H3K4me3					RNA seq upf3a;leg1a dm 5dpf 3		isolate:59\|breed:not collected\|dev stage:5dpf\|sex:not collected\|tissue:whole body\|BioSampleModel:Model organism or animal	RNA seq upf3a;leg1a dm 5dpf 3	RNA seq upf3a;leg1a dm 5dpf 3	RNA seq upf3a;leg1a dm 5dpf 3	common method		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP398597			5dpf_FFAA3_R1.fq.gz 5dpf_FFAA3_R2.fq.gz	fastq fastq	6829095600.0	22763652.0	5dpf FFAA3 R1.fq.gz	0:150 1:150	A:1834977718;C:1589426783;G:1587258204;T:1817343294;N:89601	150	150	1834977718	1589426783	1587258204	1817343294	89601	SRX17670414	SRS15202575	SRA1503252	Zhejiang University\|College of Animal Sciences	Zhejiang University	2	0.95267	0.95251	0.08847	0.08883	0.64857	0.64798	0.49013	0.48727	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2022-09-22	Larval	Larval	Trunk	Surface Structure
71112	71112	SRR21672048	SRX17670413	SRS15202574	SRP398597	PRJNA874604	Danio rerio Raw sequence reads	PRJNA874604	Whole Genome Sequencing	RNA seq data of the whole body of WT leg1a mu leg1b mu and leg1 double MZ mutant upf1 mu upf1;leg1a dm upf3a mu upf3a;leg1a dm at both 3dpf and 5dpf. liver from wt leg1a mu upf3a mu upf3a;leg1a dm at 5dpf were examined using ChIP Seq H3K4me3					RNA seq upf3a;leg1a dm 5dpf 2		isolate:58\|breed:not collected\|dev stage:5dpf\|sex:not collected\|tissue:whole body\|BioSampleModel:Model organism or animal	RNA seq upf3a;leg1a dm 5dpf 2	RNA seq upf3a;leg1a dm 5dpf 2	RNA seq upf3a;leg1a dm 5dpf 2	common method		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP398597			5dpf_FFAA2_R1.fq.gz 5dpf_FFAA2_R2.fq.gz	fastq fastq	6875076300.0	22916921.0	5dpf FFAA2 R1.fq.gz	0:150 1:150	A:1845263157;C:1602141169;G:1599765572;T:1827842687;N:63715	150	150	1845263157	1602141169	1599765572	1827842687	63715	SRX17670413	SRS15202574	SRA1503252	Zhejiang University\|College of Animal Sciences	Zhejiang University	2	0.95111	0.95007	0.09044	0.08997	0.64847	0.64883	0.48092	0.48394	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2022-09-22	Larval	Larval	Trunk	Surface Structure
71113	71113	SRR21672049	SRX17670412	SRS15202573	SRP398597	PRJNA874604	Danio rerio Raw sequence reads	PRJNA874604	Whole Genome Sequencing	RNA seq data of the whole body of WT leg1a mu leg1b mu and leg1 double MZ mutant upf1 mu upf1;leg1a dm upf3a mu upf3a;leg1a dm at both 3dpf and 5dpf. liver from wt leg1a mu upf3a mu upf3a;leg1a dm at 5dpf were examined using ChIP Seq H3K4me3					RNA seq upf3a;leg1a dm 5dpf 1		isolate:57\|breed:not collected\|dev stage:5dpf\|sex:not collected\|tissue:whole body\|BioSampleModel:Model organism or animal	RNA seq upf3a;leg1a dm 5dpf 1	RNA seq upf3a;leg1a dm 5dpf 1	RNA seq upf3a;leg1a dm 5dpf 1	common method		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP398597			5dpf_FFAA1_R1.fq.gz 5dpf_FFAA1_R2.fq.gz	fastq fastq	6883730100.0	22945767.0	5dpf FFAA1 R1.fq.gz	0:150 1:150	A:1827253993;C:1620982322;G:1624233553;T:1811181226;N:79006	150	150	1827253993	1620982322	1624233553	1811181226	79006	SRX17670412	SRS15202573	SRA1503252	Zhejiang University\|College of Animal Sciences	Zhejiang University	2	0.95179	0.95092	0.0892	0.08957	0.65086	0.6519	0.48061	0.48238	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2022-09-22	Larval	Larval	Trunk	Surface Structure
71114	71114	SRR21672050	SRX17670411	SRS15202572	SRP398597	PRJNA874604	Danio rerio Raw sequence reads	PRJNA874604	Whole Genome Sequencing	RNA seq data of the whole body of WT leg1a mu leg1b mu and leg1 double MZ mutant upf1 mu upf1;leg1a dm upf3a mu upf3a;leg1a dm at both 3dpf and 5dpf. liver from wt leg1a mu upf3a mu upf3a;leg1a dm at 5dpf were examined using ChIP Seq H3K4me3					RNA seq upf3a mu 5dpf 2		isolate:56\|breed:Tubingen\|dev stage:5dpf\|sex:not collected\|tissue:whole body\|BioSampleModel:Model organism or animal	RNA seq upf3a mu 5dpf 2	RNA seq upf3a mu 5dpf 2	RNA seq upf3a mu 5dpf 2	common method		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP398597			5dpf_FF3_R1.fq.gz 5dpf_FF3_R2.fq.gz	fastq fastq	7188429600.0	23961432.0	5dpf FF3 R1.fq.gz	0:150 1:150	A:1912896697;C:1687860991;G:1691447356;T:1896077242;N:147314	150	150	1912896697	1687860991	1691447356	1896077242	147314	SRX17670411	SRS15202572	SRA1503252	Zhejiang University\|College of Animal Sciences	Zhejiang University	2	0.94733	0.94674	0.09105	0.09126	0.65096	0.65238	0.47315	0.47153	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2022-09-22	Larval	Larval	Trunk	Surface Structure
71115	71115	SRR21672051	SRX17670410	SRS15202571	SRP398597	PRJNA874604	Danio rerio Raw sequence reads	PRJNA874604	Whole Genome Sequencing	RNA seq data of the whole body of WT leg1a mu leg1b mu and leg1 double MZ mutant upf1 mu upf1;leg1a dm upf3a mu upf3a;leg1a dm at both 3dpf and 5dpf. liver from wt leg1a mu upf3a mu upf3a;leg1a dm at 5dpf were examined using ChIP Seq H3K4me3					RNA seq upf3a mu 5dpf 1		isolate:55\|breed:Tubingen\|dev stage:5dpf\|sex:not collected\|tissue:whole body\|BioSampleModel:Model organism or animal	RNA seq upf3a mu 5dpf 1	RNA seq upf3a mu 5dpf 1	RNA seq upf3a mu 5dpf 1	common method		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP398597			5dpf_FF1_R1.fq.gz 5dpf_FF1_R2.fq.gz	fastq fastq	7000751400.0	23335838.0	5dpf FF1 R1.fq.gz	0:150 1:150	A:1871063700;C:1635888843;G:1638047609;T:1855663652;N:87596	150	150	1871063700	1635888843	1638047609	1855663652	87596	SRX17670410	SRS15202571	SRA1503252	Zhejiang University\|College of Animal Sciences	Zhejiang University	2	0.94962	0.94869	0.09323	0.09284	0.6495	0.64975	0.47723	0.4727	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2022-09-22	Larval	Larval	Trunk	Surface Structure
71116	71116	SRR21672052	SRX17670409	SRS15202569	SRP398597	PRJNA874604	Danio rerio Raw sequence reads	PRJNA874604	Whole Genome Sequencing	RNA seq data of the whole body of WT leg1a mu leg1b mu and leg1 double MZ mutant upf1 mu upf1;leg1a dm upf3a mu upf3a;leg1a dm at both 3dpf and 5dpf. liver from wt leg1a mu upf3a mu upf3a;leg1a dm at 5dpf were examined using ChIP Seq H3K4me3					RNA seq leg1a mu 5dpf 6		isolate:54\|breed:AB ZFIN ID: ZDB GENO 960809 7\|dev stage:5dpf\|sex:not collected\|tissue:whole body\|BioSampleModel:Model organism or animal	RNA seq leg1a mu 5dpf 6	RNA seq leg1a mu 5dpf 6	RNA seq leg1a mu 5dpf 6	common method		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP398597			5dpf_AA6_R1.fq.gz 5dpf_AA6_R2.fq.gz	fastq fastq	7441278900.0	24804263.0	5dpf AA6 R1.fq.gz	0:150 1:150	A:1982306651;C:1744375434;G:1749729752;T:1964667675;N:199388	150	150	1982306651	1744375434	1749729752	1964667675	199388	SRX17670409	SRS15202569	SRA1503252	Zhejiang University\|College of Animal Sciences	Zhejiang University	2	0.95137	0.95067	0.08037	0.08088	0.65052	0.65137	0.4878	0.48741	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2022-09-22	Larval	Larval	Trunk	Surface Structure

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;