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run_metadata

21 rows where experiment.library_selection = "Oligo-dT", technology = "unknown" and tissue_curation_coarse = "Respiratory System"

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devstage_curation_coarse 2

devstage_curation 2

tissue_curation_coarse 1

  • Respiratory System · 21 ✖

tissue_curation 1

technology 1

  • unknown · 21 ✖

experiment.platform 1

experiment.library_strategy 1

experiment.library_source 1

experiment.library_selection 1

  • Oligo-dT · 21 ✖

experiment.library_layout 1

Link rowid ▼ run.accession experiment.accession sample.accession study.accession bioproject study.title study.alias study.type study.abstract study.attributes study.PMIDs sample.description sample.title sample.alias sample.centername sample.attributes GEOsample.title GEOsample.dataprocessing GEOsample.source GEOsample.treatmentprotocol GEOsample.extractprotocol GEOsample.growthprotocol GEOsample.characteristics GEOsample.accession experiment.title experiment.alias experiment.library_name experiment.design_description experiment.library_construction_protocol experiment.attributes experiment.library_strategy experiment.library_source experiment.library_selection experiment.library_layout experiment.platform experiment.instrument_model experiment.spot_descriptor experiment.study_ref run.title run.attributes run.filename run.semantic_name run.total_bases run.total_spots run.alias run.read_lengths run.base_counts run.r1_length run.r2_length run.r3_length run.r4_length run.Acount run.Ccount run.Gcount run.Tcount run.Ncount run.experiment run.pool_member submission.accession submission.srasource submission.bioprojectsource seqdetective.n_mates seqdetective.mapping_rate.mate1 seqdetective.mapping_rate.mate2 seqdetective.nofeature_rate.mate1 seqdetective.nofeature_rate.mate2 seqdetective.sparsity.mate1 seqdetective.sparsity.mate2 seqdetective.pos_strand_rate.mate1 seqdetective.pos_strand_rate.mate2 seqdetective.readlen.mate1 seqdetective.readlen.mate2 seqdetective.judgement.mate1 seqdetective.judgement.mate2 seqdetective.judgement.reason platform_family instrument_generation read_bias selection_class prep_kit sc_or_bulk tech_class technology tech_variant submission.bioprojectsource.country earliest_date devstage_curation devstage_curation_coarse tissue_curation tissue_curation_coarse
35967 35967 SRR33391354 SRX28634187 SRS24905115 SRP582507 PRJNA1256627 Danio rerio Raw sequence reads PRJNA1256627 Whole Genome Sequencing Compare the immune related pathways in the gill tissues of Danio rerio in the normal group and the SVCV infected group         SVCV14D 2   strain:not applicable|isolate:not applicable|breed:AB WT|cultivar:not applicable|ecotype:not applicable|age:3 months|dev stage:not applicable|collection date:2025 01 27T08:05:00Z|geo loc name:China:Wuhan|sex:not collected|tissue:gill|BioSampleModel:Model organism or animal                 RNA seq of Danio rerio H120 H120 normal RNA seq of Danio rerio     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP582507     ZB_SVCV_2_14d_gill.R1.fq ZB_SVCV_2_14d_gill.R2.fq fastq fastq 6966025057.0 24131866.0 ZB SVCV 2 14d gill.R1.fq 0:144.33 1:144.34 A:1882860217;C:1593166410;G:1606066308;T:1883867275;N:64847 144 144     1882860217 1593166410 1606066308 1883867275 64847 SRX28634187 SRS24905115 SRA2121765 Huazhong Agricultural University|Fisheries College Huazhong Agricultural University                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2025-04-30 Adult Adult Gill Respiratory System
35968 35968 SRR33391355 SRX28634186 SRS24905114 SRP582507 PRJNA1256627 Danio rerio Raw sequence reads PRJNA1256627 Whole Genome Sequencing Compare the immune related pathways in the gill tissues of Danio rerio in the normal group and the SVCV infected group         SVCV14D 1   strain:not applicable|isolate:not applicable|breed:AB WT|cultivar:not applicable|ecotype:not applicable|age:3 months|dev stage:not applicable|collection date:2025 01 27T08:00:00Z|geo loc name:China:Wuhan|sex:not collected|tissue:gill|BioSampleModel:Model organism or animal                 RNA seq of Danio rerio H119 H119 normal RNA seq of Danio rerio     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP582507     ZB_SVCV_1_14d_gill.R1.fq ZB_SVCV_1_14d_gill.R2.fq fastq fastq 6920780962.0 23788923.0 ZB SVCV 1 14d gill.R1.fq 0:145.45 1:145.47 A:1890441266;C:1564553550;G:1574656455;T:1891065927;N:63764 145 145     1890441266 1564553550 1574656455 1891065927 63764 SRX28634186 SRS24905114 SRA2121765 Huazhong Agricultural University|Fisheries College Huazhong Agricultural University                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2025-04-30 Adult Adult Gill Respiratory System
35969 35969 SRR33391356 SRX28634185 SRS24905113 SRP582507 PRJNA1256627 Danio rerio Raw sequence reads PRJNA1256627 Whole Genome Sequencing Compare the immune related pathways in the gill tissues of Danio rerio in the normal group and the SVCV infected group         SVCV4D 4   strain:not applicable|isolate:not applicable|breed:AB WT|cultivar:not applicable|ecotype:not applicable|age:3 months|dev stage:not applicable|collection date:2025 01 17T08:35:00Z|geo loc name:China:Wuhan|sex:not collected|tissue:gill|BioSampleModel:Model organism or animal                 RNA seq of Danio rerio H118 H118 normal RNA seq of Danio rerio     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP582507     ZB_SVCV_4_4d_gill.R1.fq ZB_SVCV_4_4d_gill.R2.fq fastq fastq 6960662942.0 23947691.0 ZB SVCV 4 4d gill.R1.fq 0:145.31 1:145.35 A:1898230862;C:1576544417;G:1577166671;T:1908639715;N:81277 145 145     1898230862 1576544417 1577166671 1908639715 81277 SRX28634185 SRS24905113 SRA2121765 Huazhong Agricultural University|Fisheries College Huazhong Agricultural University                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2025-04-30 Adult Adult Gill Respiratory System
35970 35970 SRR33391357 SRX28634184 SRS24905112 SRP582507 PRJNA1256627 Danio rerio Raw sequence reads PRJNA1256627 Whole Genome Sequencing Compare the immune related pathways in the gill tissues of Danio rerio in the normal group and the SVCV infected group         SVCV4D 3   strain:not applicable|isolate:not applicable|breed:AB WT|cultivar:not applicable|ecotype:not applicable|age:3 months|dev stage:not applicable|collection date:2025 01 17T08:30:00Z|geo loc name:China:Wuhan|sex:not collected|tissue:gill|BioSampleModel:Model organism or animal                 RNA seq of Danio rerio H117 H117 normal RNA seq of Danio rerio     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP582507     ZB_SVCV_3_4d_gill.R1.fq ZB_SVCV_3_4d_gill.R2.fq fastq fastq 6896551758.0 23694251.0 ZB SVCV 3 4d gill.R1.fq 0:145.51 1:145.55 A:1867347566;C:1574421227;G:1575481954;T:1879219305;N:81706 145 145     1867347566 1574421227 1575481954 1879219305 81706 SRX28634184 SRS24905112 SRA2121765 Huazhong Agricultural University|Fisheries College Huazhong Agricultural University                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2025-04-30 Adult Adult Gill Respiratory System
35971 35971 SRR33391358 SRX28634183 SRS24905111 SRP582507 PRJNA1256627 Danio rerio Raw sequence reads PRJNA1256627 Whole Genome Sequencing Compare the immune related pathways in the gill tissues of Danio rerio in the normal group and the SVCV infected group         SVCV4D 2   strain:not applicable|isolate:not applicable|breed:AB WT|cultivar:not applicable|ecotype:not applicable|age:3 months|dev stage:not applicable|collection date:2025 01 17T08:25:00Z|geo loc name:China:Wuhan|sex:not collected|tissue:gill|BioSampleModel:Model organism or animal                 RNA seq of Danio rerio H116 H116 normal RNA seq of Danio rerio     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP582507     ZB_SVCV_2_4d_gill.R1.fq ZB_SVCV_2_4d_gill.R2.fq fastq fastq 6999980753.0 24085695.0 ZB SVCV 2 4d gill.R1.fq 0:145.29 1:145.34 A:1901052806;C:1592612390;G:1593603466;T:1912623714;N:88377 145 145     1901052806 1592612390 1593603466 1912623714 88377 SRX28634183 SRS24905111 SRA2121765 Huazhong Agricultural University|Fisheries College Huazhong Agricultural University                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2025-04-30 Adult Adult Gill Respiratory System
35972 35972 SRR33391359 SRX28634182 SRS24905110 SRP582507 PRJNA1256627 Danio rerio Raw sequence reads PRJNA1256627 Whole Genome Sequencing Compare the immune related pathways in the gill tissues of Danio rerio in the normal group and the SVCV infected group         SVCV4D 1   strain:not applicable|isolate:not applicable|breed:AB WT|cultivar:not applicable|ecotype:not applicable|age:3 months|dev stage:not applicable|collection date:2025 01 17T08:20:00Z|geo loc name:China:Wuhan|sex:not collected|tissue:gill|BioSampleModel:Model organism or animal                 RNA seq of Danio rerio H115 H115 normal RNA seq of Danio rerio     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP582507     ZB_SVCV_1_4d_gill.R1.fq ZB_SVCV_1_4d_gill.R2.fq fastq fastq 7012033571.0 24052302.0 ZB SVCV 1 4d gill.R1.fq 0:145.74 1:145.79 A:1892650486;C:1606584045;G:1608404904;T:1904311435;N:82701 145 145     1892650486 1606584045 1608404904 1904311435 82701 SRX28634182 SRS24905110 SRA2121765 Huazhong Agricultural University|Fisheries College Huazhong Agricultural University                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2025-04-30 Adult Adult Gill Respiratory System
35973 35973 SRR33391360 SRX28634181 SRS24905109 SRP582507 PRJNA1256627 Danio rerio Raw sequence reads PRJNA1256627 Whole Genome Sequencing Compare the immune related pathways in the gill tissues of Danio rerio in the normal group and the SVCV infected group         CON 4   strain:not applicable|isolate:not applicable|breed:AB WT|cultivar:not applicable|ecotype:not applicable|age:3 months|dev stage:not applicable|collection date:2025 01 17T08:15:00Z|geo loc name:China:Wuhan|sex:not collected|tissue:gill|BioSampleModel:Model organism or animal                 RNA seq of Danio rerio H114 H114 normal RNA seq of Danio rerio     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP582507     ZB_CON_4_gill.R1.fq ZB_CON_4_gill.R2.fq fastq fastq 6929661185.0 24100208.0 ZB CON 4 gill.R1.fq 0:143.76 1:143.78 A:1877509781;C:1580761237;G:1592890100;T:1878437625;N:62442 143 143     1877509781 1580761237 1592890100 1878437625 62442 SRX28634181 SRS24905109 SRA2121765 Huazhong Agricultural University|Fisheries College Huazhong Agricultural University                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2025-04-30 Adult Adult Gill Respiratory System
35974 35974 SRR33391361 SRX28634180 SRS24905108 SRP582507 PRJNA1256627 Danio rerio Raw sequence reads PRJNA1256627 Whole Genome Sequencing Compare the immune related pathways in the gill tissues of Danio rerio in the normal group and the SVCV infected group         CON 3   strain:not applicable|isolate:not applicable|breed:AB WT|cultivar:not applicable|ecotype:not applicable|age:3 months|dev stage:not applicable|collection date:2025 01 17T08:10:00Z|geo loc name:China:Wuhan|sex:not collected|tissue:gill|BioSampleModel:Model organism or animal                 RNA seq of Danio rerio H113 H113 normal RNA seq of Danio rerio     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP582507     ZB_CON_3_gill.R1.fq ZB_CON_3_gill.R2.fq fastq fastq 7019729922.0 24395174.0 ZB CON 3 gill.R1.fq 0:143.86 1:143.89 A:1897770435;C:1606322507;G:1616884825;T:1898684128;N:68027 143 143     1897770435 1606322507 1616884825 1898684128 68027 SRX28634180 SRS24905108 SRA2121765 Huazhong Agricultural University|Fisheries College Huazhong Agricultural University                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2025-04-30 Adult Adult Gill Respiratory System
35975 35975 SRR33391362 SRX28634179 SRS24905107 SRP582507 PRJNA1256627 Danio rerio Raw sequence reads PRJNA1256627 Whole Genome Sequencing Compare the immune related pathways in the gill tissues of Danio rerio in the normal group and the SVCV infected group         SVCV14D 4   strain:not applicable|isolate:not applicable|breed:AB WT|cultivar:not applicable|ecotype:not applicable|age:3 months|dev stage:not applicable|collection date:2025 01 27T08:15:00Z|geo loc name:China:Wuhan|sex:not collected|tissue:gill|BioSampleModel:Model organism or animal                 RNA seq of Danio rerio H122 H122 normal RNA seq of Danio rerio     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP582507     ZB_SVCV_4_14d_gill.R1.fq ZB_SVCV_4_14d_gill.R2.fq fastq fastq 6968038769.0 24268828.0 ZB SVCV 4 14d gill.R1.fq 0:143.55 1:143.57 A:1894155079;C:1584673108;G:1594301221;T:1894847261;N:62100 143 143     1894155079 1584673108 1594301221 1894847261 62100 SRX28634179 SRS24905107 SRA2121765 Huazhong Agricultural University|Fisheries College Huazhong Agricultural University                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2025-04-30 Adult Adult Gill Respiratory System
35976 35976 SRR33391363 SRX28634178 SRS24905106 SRP582507 PRJNA1256627 Danio rerio Raw sequence reads PRJNA1256627 Whole Genome Sequencing Compare the immune related pathways in the gill tissues of Danio rerio in the normal group and the SVCV infected group         SVCV14D 3   strain:not applicable|isolate:not applicable|breed:AB WT|cultivar:not applicable|ecotype:not applicable|age:3 months|dev stage:not applicable|collection date:2025 01 27T08:10:00Z|geo loc name:China:Wuhan|sex:not collected|tissue:gill|BioSampleModel:Model organism or animal                 RNA seq of Danio rerio H121 H121 normal RNA seq of Danio rerio     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP582507     ZB_SVCV_3_14d_gill.R1.fq ZB_SVCV_3_14d_gill.R2.fq fastq fastq 6951811490.0 24136855.0 ZB SVCV 3 14d gill.R1.fq 0:144.00 1:144.02 A:1852500638;C:1617829175;G:1627624953;T:1853792254;N:64470 144 144     1852500638 1617829175 1627624953 1853792254 64470 SRX28634178 SRS24905106 SRA2121765 Huazhong Agricultural University|Fisheries College Huazhong Agricultural University                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2025-04-30 Adult Adult Gill Respiratory System
35977 35977 SRR33391364 SRX28634177 SRS24905105 SRP582507 PRJNA1256627 Danio rerio Raw sequence reads PRJNA1256627 Whole Genome Sequencing Compare the immune related pathways in the gill tissues of Danio rerio in the normal group and the SVCV infected group         CON 2   strain:not applicable|isolate:not applicable|breed:AB WT|cultivar:not applicable|ecotype:not applicable|age:3 months|dev stage:not applicable|collection date:2025 01 17T08:05:00Z|geo loc name:China:Wuhan|sex:not collected|tissue:gill|BioSampleModel:Model organism or animal                 RNA seq of Danio rerio H112 H112 normal RNA seq of Danio rerio     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP582507     ZB_CON_2_gill.R1.fq ZB_CON_2_gill.R2.fq fastq fastq 7001642091.0 24194482.0 ZB CON 2 gill.R1.fq 0:144.69 1:144.70 A:1881759812;C:1611435897;G:1625551630;T:1882829975;N:64777 144 144     1881759812 1611435897 1625551630 1882829975 64777 SRX28634177 SRS24905105 SRA2121765 Huazhong Agricultural University|Fisheries College Huazhong Agricultural University                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2025-04-30 Adult Adult Gill Respiratory System
35978 35978 SRR33391365 SRX28634176 SRS24905104 SRP582507 PRJNA1256627 Danio rerio Raw sequence reads PRJNA1256627 Whole Genome Sequencing Compare the immune related pathways in the gill tissues of Danio rerio in the normal group and the SVCV infected group         CON 1   strain:not applicable|isolate:not applicable|breed:AB WT|cultivar:not applicable|ecotype:not applicable|age:3 months|dev stage:not applicable|collection date:2025 01 17T08:00:00Z|geo loc name:China:Wuhan|sex:not collected|tissue:gill|BioSampleModel:Model organism or animal                 RNA seq of Danio rerio H111 H111 normal RNA seq of Danio rerio     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP582507     ZB_CON_1_gill.R1.fq ZB_CON_1_gill.R2.fq fastq fastq 6930336817.0 23773373.0 ZB CON 1 gill.R1.fq 0:145.73 1:145.79 A:1895505196;C:1565575763;G:1565751293;T:1903418631;N:85934 145 145     1895505196 1565575763 1565751293 1903418631 85934 SRX28634176 SRS24905104 SRA2121765 Huazhong Agricultural University|Fisheries College Huazhong Agricultural University                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2025-04-30 Adult Adult Gill Respiratory System
67836 67836 SRR17386276 SRX13560365 SRS11453104 SRP352979 PRJNA793147 Danio rerio Raw sequence reads PRJNA793147 Whole Genome Sequencing normal RNA seq of Danio rerio         G7 3   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:not collected|sex:not determined|tissue:Gill|replicate:replicate=biological replicate 9|BioSampleModel:Model organism or animal                 RNAseq of Danio rerio S131 S131 normal RNA seq of Danio rerio     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP352979     Gill_7dpi3_Clean_Data1.fq.gz Gill_7dpi3_Clean_Data2.fq.gz fastq fastq 6714068679.0 23990941.0 Gill 7dpi3 Clean Data1.fq.gz 0:139.94 1:139.92 A:1763959035;C:1585978862;G:1593569642;T:1770413859;N:147281 139 139     1763959035 1585978862 1593569642 1770413859 147281 SRX13560365 SRS11453104 SRA1350370 Northwest A&F University|College of Animal Science and Technology Northwest A&F University 2 0.9346 0.93604 0.05602 0.05525 0.69877 0.69761 0.5006 0.50091 141 141 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2021-12-30 Undetermined Undetermined Gill Respiratory System
67837 67837 SRR17386277 SRX13560364 SRS11453103 SRP352979 PRJNA793147 Danio rerio Raw sequence reads PRJNA793147 Whole Genome Sequencing normal RNA seq of Danio rerio         G7 2   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:not collected|sex:not determined|tissue:Gill|replicate:replicate=biological replicate 8|BioSampleModel:Model organism or animal                 RNAseq of Danio rerio S130 S130 normal RNA seq of Danio rerio     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP352979     Gill_7dpi2_Clean_Data1.fq.gz Gill_7dpi2_Clean_Data2.fq.gz fastq fastq 6651799504.0 23755238.0 Gill 7dpi2 Clean Data1.fq.gz 0:140.01 1:140.00 A:1739818732;C:1574969869;G:1589121073;T:1747742026;N:147804 140 140     1739818732 1574969869 1589121073 1747742026 147804 SRX13560364 SRS11453103 SRA1350370 Northwest A&F University|College of Animal Science and Technology Northwest A&F University 2 0.93216 0.93204 0.05441 0.05411 0.70021 0.70017 0.49971 0.50022 141 141 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2021-12-30 Undetermined Undetermined Gill Respiratory System
67838 67838 SRR17386278 SRX13560363 SRS11453102 SRP352979 PRJNA793147 Danio rerio Raw sequence reads PRJNA793147 Whole Genome Sequencing normal RNA seq of Danio rerio         G7 1   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:not collected|sex:not determined|tissue:Gill|replicate:replicate=biological replicate 7|BioSampleModel:Model organism or animal                 RNAseq of Danio rerio S129 S129 normal RNA seq of Danio rerio     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP352979     Gill_7dpi1_Clean_Data1.fq.gz Gill_7dpi1_Clean_Data2.fq.gz fastq fastq 4992822830.0 17852500.0 Gill 7dpi1 Clean Data1.fq.gz 0:139.84 1:139.83 A:1332570758;C:1157260526;G:1174499594;T:1328481612;N:10340 139 139     1332570758 1157260526 1174499594 1328481612 10340 SRX13560363 SRS11453102 SRA1350370 Northwest A&F University|College of Animal Science and Technology Northwest A&F University 2 0.9281 0.93065 0.06937 0.06833 0.69033 0.68893 0.50068 0.50026 141 141 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2021-12-30 Undetermined Undetermined Gill Respiratory System
67839 67839 SRR17386279 SRX13560362 SRS11453101 SRP352979 PRJNA793147 Danio rerio Raw sequence reads PRJNA793147 Whole Genome Sequencing normal RNA seq of Danio rerio         G3 3   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:not collected|sex:not determined|tissue:Gill|replicate:replicate=biological replicate 6|BioSampleModel:Model organism or animal                 RNAseq of Danio rerio S128 S128 normal RNA seq of Danio rerio     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP352979     Gill_3dpi3_Clean_Data1.fq.gz Gill_3dpi3_Clean_Data2.fq.gz fastq fastq 6997831816.0 24954040.0 Gill 3dpi3 Clean Data1.fq.gz 0:140.22 1:140.21 A:1830864881;C:1655547632;G:1672630082;T:1838637853;N:151368 140 140     1830864881 1655547632 1672630082 1838637853 151368 SRX13560362 SRS11453101 SRA1350370 Northwest A&F University|College of Animal Science and Technology Northwest A&F University 2 0.93226 0.93407 0.04804 0.04727 0.71981 0.71881 0.48198 0.48333 141 141 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2021-12-30 Undetermined Undetermined Gill Respiratory System
67840 67840 SRR17386280 SRX13560361 SRS11453100 SRP352979 PRJNA793147 Danio rerio Raw sequence reads PRJNA793147 Whole Genome Sequencing normal RNA seq of Danio rerio         G3 2   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:not collected|sex:not determined|tissue:Gill|replicate:replicate=biological replicate 5|BioSampleModel:Model organism or animal                 RNAseq of Danio rerio S127 S127 normal RNA seq of Danio rerio     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP352979     Gill_3dpi2_Clean_Data1.fq.gz Gill_3dpi2_Clean_Data2.fq.gz fastq fastq 7042078942.0 25114470.0 Gill 3dpi2 Clean Data1.fq.gz 0:140.21 1:140.19 A:1839895370;C:1667692247;G:1684937624;T:1849401074;N:152627 140 140     1839895370 1667692247 1684937624 1849401074 152627 SRX13560361 SRS11453100 SRA1350370 Northwest A&F University|College of Animal Science and Technology Northwest A&F University 2 0.93037 0.93106 0.04787 0.04704 0.71956 0.71833 0.4789 0.48397 141 141 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2021-12-30 Undetermined Undetermined Gill Respiratory System
67841 67841 SRR17386281 SRX13560360 SRS11453099 SRP352979 PRJNA793147 Danio rerio Raw sequence reads PRJNA793147 Whole Genome Sequencing normal RNA seq of Danio rerio         G3 1   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:not collected|sex:not determined|tissue:Gill|replicate:replicate=biological replicate 4|BioSampleModel:Model organism or animal                 RNAseq of Danio rerio S126 S126 normal RNA seq of Danio rerio     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP352979     Gill_3dpi1_Clean_Data1.fq.gz Gill_3dpi1_Clean_Data2.fq.gz fastq fastq 6795179593.0 24546282.0 Gill 3dpi1 Clean Data1.fq.gz 0:138.41 1:138.42 A:1740617128;C:1653484959;G:1667383107;T:1733667548;N:26851 138 138     1740617128 1653484959 1667383107 1733667548 26851 SRX13560360 SRS11453099 SRA1350370 Northwest A&F University|College of Animal Science and Technology Northwest A&F University 2 0.93975 0.93965 0.04328 0.04269 0.71908 0.72032 0.47917 0.47612 141 141 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2021-12-30 Undetermined Undetermined Gill Respiratory System
67842 67842 SRR17386282 SRX13560359 SRS11453098 SRP352979 PRJNA793147 Danio rerio Raw sequence reads PRJNA793147 Whole Genome Sequencing normal RNA seq of Danio rerio         ck 3   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:not collected|sex:not determined|tissue:Gill|replicate:replicate=biological replicate 3|BioSampleModel:Model organism or animal                 RNAseq of Danio rerio S125 S125 normal RNA seq of Danio rerio     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP352979     Gill_con3_Clean_Data1.fq.gz Gill_con3_Clean_Data2.fq.gz fastq fastq 6532623508.0 23299642.0 Gill con3 Clean Data1.fq.gz 0:140.19 1:140.18 A:1719338437;C:1532877064;G:1551680948;T:1728585867;N:141192 140 140     1719338437 1532877064 1551680948 1728585867 141192 SRX13560359 SRS11453098 SRA1350370 Northwest A&F University|College of Animal Science and Technology Northwest A&F University 2 0.93634 0.93701 0.0531 0.05253 0.72936 0.72977 0.48876 0.49167 141 141 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2021-12-30 Undetermined Undetermined Gill Respiratory System
67843 67843 SRR17386283 SRX13560358 SRS11453097 SRP352979 PRJNA793147 Danio rerio Raw sequence reads PRJNA793147 Whole Genome Sequencing normal RNA seq of Danio rerio         ck 2   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:not collected|sex:not determined|tissue:Gill|replicate:replicate=biological replicate 2|BioSampleModel:Model organism or animal                 RNAseq of Danio rerio S124 S124 normal RNA seq of Danio rerio     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP352979     Gill_con2_Clean_Data1.fq.gz Gill_con2_Clean_Data2.fq.gz fastq fastq 5961805472.0 21275022.0 Gill con2 Clean Data1.fq.gz 0:140.12 1:140.11 A:1562509100;C:1405898016;G:1423494829;T:1569772023;N:131504 140 140     1562509100 1405898016 1423494829 1569772023 131504 SRX13560358 SRS11453097 SRA1350370 Northwest A&F University|College of Animal Science and Technology Northwest A&F University 2 0.93445 0.93628 0.04993 0.04957 0.73182 0.73077 0.48248 0.49573 141 141 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2021-12-30 Undetermined Undetermined Gill Respiratory System
67844 67844 SRR17386284 SRX13560357 SRS11453096 SRP352979 PRJNA793147 Danio rerio Raw sequence reads PRJNA793147 Whole Genome Sequencing normal RNA seq of Danio rerio         ck 1   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:not collected|sex:not determined|tissue:Gill|replicate:replicate=biological replicate 1|BioSampleModel:Model organism or animal                 RNAseq of Danio rerio S123 S123 normal RNA seq of Danio rerio     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP352979     Gill_con1_Clean_Data1.fq.gz Gill_con1_Clean_Data2.fq.gz fastq fastq 5140938459.0 18343430.0 Gill con1 Clean Data1.fq.gz 0:140.14 1:140.12 A:1372431897;C:1190016635;G:1209788123;T:1368690050;N:11754 140 140     1372431897 1190016635 1209788123 1368690050 11754 SRX13560357 SRS11453096 SRA1350370 Northwest A&F University|College of Animal Science and Technology Northwest A&F University 2 0.92642 0.93067 0.06487 0.06429 0.72529 0.72403 0.51099 0.51071 141 141 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2021-12-30 Undetermined Undetermined Gill Respiratory System

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;