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9 rows where experiment.library_selection = "Oligo-dT", technology = "unknown" and tissue_curation_coarse = "Renal System"

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tissue_curation_coarse 1

  • Renal System · 9 ✖

tissue_curation 1

technology 1

  • unknown · 9 ✖

experiment.platform 1

experiment.library_strategy 1

experiment.library_source 1

experiment.library_selection 1

  • Oligo-dT · 9 ✖

experiment.library_layout 1

devstage_curation_coarse 1

devstage_curation 1

Link rowid ▼ run.accession experiment.accession sample.accession study.accession bioproject study.title study.alias study.type study.abstract study.attributes study.PMIDs sample.description sample.title sample.alias sample.centername sample.attributes GEOsample.title GEOsample.dataprocessing GEOsample.source GEOsample.treatmentprotocol GEOsample.extractprotocol GEOsample.growthprotocol GEOsample.characteristics GEOsample.accession experiment.title experiment.alias experiment.library_name experiment.design_description experiment.library_construction_protocol experiment.attributes experiment.library_strategy experiment.library_source experiment.library_selection experiment.library_layout experiment.platform experiment.instrument_model experiment.spot_descriptor experiment.study_ref run.title run.attributes run.filename run.semantic_name run.total_bases run.total_spots run.alias run.read_lengths run.base_counts run.r1_length run.r2_length run.r3_length run.r4_length run.Acount run.Ccount run.Gcount run.Tcount run.Ncount run.experiment run.pool_member submission.accession submission.srasource submission.bioprojectsource seqdetective.n_mates seqdetective.mapping_rate.mate1 seqdetective.mapping_rate.mate2 seqdetective.nofeature_rate.mate1 seqdetective.nofeature_rate.mate2 seqdetective.sparsity.mate1 seqdetective.sparsity.mate2 seqdetective.pos_strand_rate.mate1 seqdetective.pos_strand_rate.mate2 seqdetective.readlen.mate1 seqdetective.readlen.mate2 seqdetective.judgement.mate1 seqdetective.judgement.mate2 seqdetective.judgement.reason platform_family instrument_generation read_bias selection_class prep_kit sc_or_bulk tech_class technology tech_variant submission.bioprojectsource.country earliest_date devstage_curation devstage_curation_coarse tissue_curation tissue_curation_coarse
74167 74167 SRR23576631 SRX19463426 SRS16856050 SRP423783 PRJNA937311 Telomere elongation in the gut extends systemic healthspan of zebrafish PRJNA937311 Other Telomere shortening is a hallmark of aging and is counteracted by telomerase. zebrafish gut is one of the organs with the fastest rate of telomere decline. However whether telomere dependent aging of an individual organ the gut causes systemic aging remains unknown. Here we show that preventing telomere shortening in the gut through tissue specific telomerase expression rescues premature aging of tert / . Conclusively we show that gut specific telomerase expression extends lifespan of tert / by 40 % while ameliorating natural aging. Our work demonstrates that delaying telomere shortening in the gut is sufficient to systemically counteract aging in zebrafish.         K9   strain:AB|age:9 month|dev stage:adulte|sex:male|tissue:kidney marrow|biomaterial provider:EL MAI Mounir|birth date:2019/11/20|birth location:Nice France|treatment:kidneymarrow WT R3|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult male kidney marrow K9 K9 RNA Seq of Danio rerio : adult male kidney marrow     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP423783     k9_1.fq.gz k9_2.fq.gz fastq fastq 12170484800.0 121704848.0 k9 1.fq.gz 0:100 1:100 A:3429398396;C:2639165188;G:2664600070;T:3437321146;N:0 100 100     3429398396 2639165188 2664600070 3437321146 0 SRX19463426 SRS16856050 SRA1593824 Sun Yat-sen University Cancer Center|State Key Laboratory of Oncology in South China Sun Yat-sen University Cancer Center Miguel Godinho Ferreira 1 0.93913   0.13619   0.76623   0.63929   100   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   China 2023-02-21 Adult Adult Kidney Renal System
74168 74168 SRR23576632 SRX19463425 SRS16856047 SRP423783 PRJNA937311 Telomere elongation in the gut extends systemic healthspan of zebrafish PRJNA937311 Other Telomere shortening is a hallmark of aging and is counteracted by telomerase. zebrafish gut is one of the organs with the fastest rate of telomere decline. However whether telomere dependent aging of an individual organ the gut causes systemic aging remains unknown. Here we show that preventing telomere shortening in the gut through tissue specific telomerase expression rescues premature aging of tert / . Conclusively we show that gut specific telomerase expression extends lifespan of tert / by 40 % while ameliorating natural aging. Our work demonstrates that delaying telomere shortening in the gut is sufficient to systemically counteract aging in zebrafish.         K8   strain:AB|age:9 month|dev stage:adulte|sex:male|tissue:kidney marrow|biomaterial provider:EL MAI Mounir|birth date:2019/11/20|birth location:Nice France|treatment:kidneymarrow WT R2|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult male kidney marrow K8 K8 RNA Seq of Danio rerio : adult male kidney marrow     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP423783     k8_1.fq.gz k8_2.fq.gz fastq fastq 12160185000.0 121601850.0 k8 1.fq.gz 0:100 1:100 A:3416677165;C:2642321577;G:2671959016;T:3429227242;N:0 100 100     3416677165 2642321577 2671959016 3429227242 0 SRX19463425 SRS16856047 SRA1593824 Sun Yat-sen University Cancer Center|State Key Laboratory of Oncology in South China Sun Yat-sen University Cancer Center Miguel Godinho Ferreira 1 0.94207   0.13408   0.76211   0.63866   100   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   China 2023-02-21 Adult Adult Kidney Renal System
74169 74169 SRR23576633 SRX19463424 SRS16856049 SRP423783 PRJNA937311 Telomere elongation in the gut extends systemic healthspan of zebrafish PRJNA937311 Other Telomere shortening is a hallmark of aging and is counteracted by telomerase. zebrafish gut is one of the organs with the fastest rate of telomere decline. However whether telomere dependent aging of an individual organ the gut causes systemic aging remains unknown. Here we show that preventing telomere shortening in the gut through tissue specific telomerase expression rescues premature aging of tert / . Conclusively we show that gut specific telomerase expression extends lifespan of tert / by 40 % while ameliorating natural aging. Our work demonstrates that delaying telomere shortening in the gut is sufficient to systemically counteract aging in zebrafish.         K7   strain:AB|age:9 month|dev stage:adulte|sex:male|tissue:kidney marrow|biomaterial provider:EL MAI Mounir|birth date:2019/11/20|birth location:Nice France|treatment:kidneymarrow WT R1|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult male kidney marrow K7 K7 RNA Seq of Danio rerio : adult male kidney marrow     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP423783     k7_1.fq.gz k7_2.fq.gz fastq fastq 12148090800.0 121480908.0 k7 1.fq.gz 0:100 1:100 A:3393484862;C:2656728106;G:2695881495;T:3401996337;N:0 100 100     3393484862 2656728106 2695881495 3401996337 0 SRX19463424 SRS16856049 SRA1593824 Sun Yat-sen University Cancer Center|State Key Laboratory of Oncology in South China Sun Yat-sen University Cancer Center Miguel Godinho Ferreira 1 0.93783   0.12581   0.76205   0.61561   100   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   China 2023-02-21 Adult Adult Kidney Renal System
74170 74170 SRR23576634 SRX19463423 SRS16856046 SRP423783 PRJNA937311 Telomere elongation in the gut extends systemic healthspan of zebrafish PRJNA937311 Other Telomere shortening is a hallmark of aging and is counteracted by telomerase. zebrafish gut is one of the organs with the fastest rate of telomere decline. However whether telomere dependent aging of an individual organ the gut causes systemic aging remains unknown. Here we show that preventing telomere shortening in the gut through tissue specific telomerase expression rescues premature aging of tert / . Conclusively we show that gut specific telomerase expression extends lifespan of tert / by 40 % while ameliorating natural aging. Our work demonstrates that delaying telomere shortening in the gut is sufficient to systemically counteract aging in zebrafish.         K6   strain:AB|age:9 month|dev stage:adulte|sex:male|tissue:kidney marrow|biomaterial provider:EL MAI Mounir|birth date:2019/11/20|birth location:Nice France|treatment:kidneymarrow tert Cre R3|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult male kidney marrow K6 K6 RNA Seq of Danio rerio : adult male kidney marrow     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP423783     k6_1.fq.gz k6_2.fq.gz fastq fastq 12173062600.0 121730626.0 k6 1.fq.gz 0:100 1:100 A:3357618903;C:2705746086;G:2734807941;T:3374889670;N:0 100 100     3357618903 2705746086 2734807941 3374889670 0 SRX19463423 SRS16856046 SRA1593824 Sun Yat-sen University Cancer Center|State Key Laboratory of Oncology in South China Sun Yat-sen University Cancer Center Miguel Godinho Ferreira 1 0.94651   0.13977   0.76575   0.62959   100   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   China 2023-02-21 Adult Adult Kidney Renal System
74171 74171 SRR23576635 SRX19463422 SRS16856045 SRP423783 PRJNA937311 Telomere elongation in the gut extends systemic healthspan of zebrafish PRJNA937311 Other Telomere shortening is a hallmark of aging and is counteracted by telomerase. zebrafish gut is one of the organs with the fastest rate of telomere decline. However whether telomere dependent aging of an individual organ the gut causes systemic aging remains unknown. Here we show that preventing telomere shortening in the gut through tissue specific telomerase expression rescues premature aging of tert / . Conclusively we show that gut specific telomerase expression extends lifespan of tert / by 40 % while ameliorating natural aging. Our work demonstrates that delaying telomere shortening in the gut is sufficient to systemically counteract aging in zebrafish.         K5   strain:AB|age:9 month|dev stage:adulte|sex:male|tissue:kidney marrow|biomaterial provider:EL MAI Mounir|birth date:2019/11/20|birth location:Nice France|treatment:kidneymarrow tert Cre R2|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult male kidney marrow K5 K5 RNA Seq of Danio rerio : adult male kidney marrow     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP423783     k5_1.fq.gz k5_2.fq.gz fastq fastq 12151346800.0 121513468.0 k5 1.fq.gz 0:100 1:100 A:3323730498;C:2725613099;G:2760112468;T:3341890735;N:0 100 100     3323730498 2725613099 2760112468 3341890735 0 SRX19463422 SRS16856045 SRA1593824 Sun Yat-sen University Cancer Center|State Key Laboratory of Oncology in South China Sun Yat-sen University Cancer Center Miguel Godinho Ferreira 1 0.94297   0.12142   0.75836   0.6001   100   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   China 2023-02-21 Adult Adult Kidney Renal System
74172 74172 SRR23576636 SRX19463421 SRS16856044 SRP423783 PRJNA937311 Telomere elongation in the gut extends systemic healthspan of zebrafish PRJNA937311 Other Telomere shortening is a hallmark of aging and is counteracted by telomerase. zebrafish gut is one of the organs with the fastest rate of telomere decline. However whether telomere dependent aging of an individual organ the gut causes systemic aging remains unknown. Here we show that preventing telomere shortening in the gut through tissue specific telomerase expression rescues premature aging of tert / . Conclusively we show that gut specific telomerase expression extends lifespan of tert / by 40 % while ameliorating natural aging. Our work demonstrates that delaying telomere shortening in the gut is sufficient to systemically counteract aging in zebrafish.         K4   strain:AB|age:9 month|dev stage:adulte|sex:male|tissue:kidney marrow|biomaterial provider:EL MAI Mounir|birth date:2019/11/20|birth location:Nice France|treatment:kidneymarrow tert Cre R1|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult male kidney marrow K4 K4 RNA Seq of Danio rerio : adult male kidney marrow     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP423783     k4_1.fq.gz k4_2.fq.gz fastq fastq 12130512600.0 121305126.0 k4 1.fq.gz 0:100 1:100 A:3347896596;C:2682409134;G:2729255490;T:3370951380;N:0 100 100     3347896596 2682409134 2729255490 3370951380 0 SRX19463421 SRS16856044 SRA1593824 Sun Yat-sen University Cancer Center|State Key Laboratory of Oncology in South China Sun Yat-sen University Cancer Center Miguel Godinho Ferreira 1 0.94729   0.12594   0.75684   0.53755   100   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   China 2023-02-21 Adult Adult Kidney Renal System
74173 74173 SRR23576637 SRX19463420 SRS16856043 SRP423783 PRJNA937311 Telomere elongation in the gut extends systemic healthspan of zebrafish PRJNA937311 Other Telomere shortening is a hallmark of aging and is counteracted by telomerase. zebrafish gut is one of the organs with the fastest rate of telomere decline. However whether telomere dependent aging of an individual organ the gut causes systemic aging remains unknown. Here we show that preventing telomere shortening in the gut through tissue specific telomerase expression rescues premature aging of tert / . Conclusively we show that gut specific telomerase expression extends lifespan of tert / by 40 % while ameliorating natural aging. Our work demonstrates that delaying telomere shortening in the gut is sufficient to systemically counteract aging in zebrafish.         K3   strain:AB|age:9 month|dev stage:adulte|sex:male|tissue:kidney marrow|biomaterial provider:EL MAI Mounir|birth date:2019/11/20|birth location:Nice France|treatment:kidneymarrow no Cre R3|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult male kidney marrow K3 K3 RNA Seq of Danio rerio : adult male kidney marrow     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP423783     k3_1.fq.gz k3_2.fq.gz fastq fastq 12414982200.0 124149822.0 k3 1.fq.gz 0:100 1:100 A:3396256131;C:2779475706;G:2819830912;T:3419419451;N:0 100 100     3396256131 2779475706 2819830912 3419419451 0 SRX19463420 SRS16856043 SRA1593824 Sun Yat-sen University Cancer Center|State Key Laboratory of Oncology in South China Sun Yat-sen University Cancer Center Miguel Godinho Ferreira 1 0.94186   0.13004   0.7613   0.53529   100   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   China 2023-02-21 Adult Adult Kidney Renal System
74175 74175 SRR23576639 SRX19463418 SRS16856041 SRP423783 PRJNA937311 Telomere elongation in the gut extends systemic healthspan of zebrafish PRJNA937311 Other Telomere shortening is a hallmark of aging and is counteracted by telomerase. zebrafish gut is one of the organs with the fastest rate of telomere decline. However whether telomere dependent aging of an individual organ the gut causes systemic aging remains unknown. Here we show that preventing telomere shortening in the gut through tissue specific telomerase expression rescues premature aging of tert / . Conclusively we show that gut specific telomerase expression extends lifespan of tert / by 40 % while ameliorating natural aging. Our work demonstrates that delaying telomere shortening in the gut is sufficient to systemically counteract aging in zebrafish.         K2   strain:AB|age:9 month|dev stage:adulte|sex:male|tissue:kidney marrow|biomaterial provider:EL MAI Mounir|birth date:2019/11/20|birth location:Nice France|treatment:kidneymarrow no Cre R2|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult male kidney marrow K2 K2 RNA Seq of Danio rerio : adult male kidney marrow     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP423783     k2_1.fq.gz k2_2.fq.gz fastq fastq 12163413800.0 121634138.0 k2 1.fq.gz 0:100 1:100 A:3349566787;C:2697789330;G:2746344614;T:3369713069;N:0 100 100     3349566787 2697789330 2746344614 3369713069 0 SRX19463418 SRS16856041 SRA1593824 Sun Yat-sen University Cancer Center|State Key Laboratory of Oncology in South China Sun Yat-sen University Cancer Center Miguel Godinho Ferreira 1 0.93698   0.12494   0.73933   0.59199   100   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   China 2023-02-21 Adult Adult Kidney Renal System
74176 74176 SRR23576640 SRX19463417 SRS16856042 SRP423783 PRJNA937311 Telomere elongation in the gut extends systemic healthspan of zebrafish PRJNA937311 Other Telomere shortening is a hallmark of aging and is counteracted by telomerase. zebrafish gut is one of the organs with the fastest rate of telomere decline. However whether telomere dependent aging of an individual organ the gut causes systemic aging remains unknown. Here we show that preventing telomere shortening in the gut through tissue specific telomerase expression rescues premature aging of tert / . Conclusively we show that gut specific telomerase expression extends lifespan of tert / by 40 % while ameliorating natural aging. Our work demonstrates that delaying telomere shortening in the gut is sufficient to systemically counteract aging in zebrafish.         K1   strain:AB|age:9 month|dev stage:adulte|sex:male|tissue:kidney marrow|biomaterial provider:EL MAI Mounir|birth date:2019/11/20|birth location:Nice France|treatment:kidneymarrow no Cre R1|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult male kidney marrow K1 K1 RNA Seq of Danio rerio : adult male kidney marrow     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP423783     k1_1.fq.gz k1_2.fq.gz fastq fastq 12163054400.0 121630544.0 k1 1.fq.gz 0:100 1:100 A:3337026687;C:2722574700;G:2757511786;T:3345941227;N:0 100 100     3337026687 2722574700 2757511786 3345941227 0 SRX19463417 SRS16856042 SRA1593824 Sun Yat-sen University Cancer Center|State Key Laboratory of Oncology in South China Sun Yat-sen University Cancer Center Miguel Godinho Ferreira 1 0.94273   0.11801   0.75258   0.57192   100   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   China 2023-02-21 Adult Adult Kidney Renal System

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;