metadata: run_metadata: 159 rows where experiment.library_selection = "Oligo-dT", technology = "unknown" and tissue_curation

159 rows where experiment.library_selection = "Oligo-dT", technology = "unknown" and tissue_curation_coarse = "Nervous System"

descending

Link	rowid ▼	run.accession	experiment.accession	sample.accession	study.accession	bioproject	study.title	study.alias	study.type	study.abstract	study.attributes	sample.description	sample.title	sample.alias	sample.centername	sample.attributes	experiment.title	experiment.alias	experiment.library_name	experiment.design_description	experiment.library_construction_protocol	experiment.attributes	experiment.library_strategy	experiment.library_source	experiment.library_selection	experiment.library_layout	experiment.platform	experiment.instrument_model	experiment.spot_descriptor	experiment.study_ref	run.title	run.attributes	run.filename	run.semantic_name	run.total_bases	run.total_spots	run.alias	run.read_lengths	run.base_counts	run.r1_length	run.r2_length	run.Acount	run.Ccount	run.Gcount	run.Tcount	run.Ncount	run.experiment	run.pool_member	submission.accession	submission.srasource	submission.bioprojectsource	seqdetective.n_mates	seqdetective.mapping_rate.mate1	seqdetective.mapping_rate.mate2	seqdetective.nofeature_rate.mate1	seqdetective.nofeature_rate.mate2	seqdetective.sparsity.mate1	seqdetective.sparsity.mate2	seqdetective.pos_strand_rate.mate1	seqdetective.pos_strand_rate.mate2	seqdetective.readlen.mate1	seqdetective.readlen.mate2	seqdetective.judgement.mate1	seqdetective.judgement.mate2	seqdetective.judgement.reason	platform_family	instrument_generation	read_bias	selection_class	prep_kit	sc_or_bulk	tech_class	technology	submission.bioprojectsource.country	earliest_date	devstage_curation	devstage_curation_coarse	tissue_curation	tissue_curation_coarse
9356	9356	ERR2983452	ERX2986068	ERS2955656	ERP112513	PRJEB30097	RNA Seq of Danionine species	E-MTAB-7476	Transcriptome Analysis	Tissues specific transcriptomes of Danio rerio Danio albolineatus and Danio aesculapii Brain Liver and Gonads.	ENA FIRST PUBLIC:2018 12 05\|ENA LAST UPDATE:2018 12 05	Protocols: Organs were sampled and snap frozen in liquid nitrogen RNA was extracted using Trizol and standard silica membrane protocol Library was constructed using magnetic beads dT to enrich mRNA. post fragmentation the cDNA was synthesized using the mRNA fragments as templates with random hexamer primers.	R3wB	SAMEA5147911	University of Hamburg, Institute of Zoology, Molecular Animal Physiology	ENA FIRST PUBLIC:2018 12 05T17:02:27Z\|ENA LAST UPDATE:2018 12 05T10:01:48Z\|External Id:SAMEA5147911\|INSDC center name:University of Hamburg Institute of Zoology Molecular Animal Physiology\|INSDC first public:2018 12 05T17:02:27Z\|INSDC last update:2018 12 05T10:01:48Z\|INSDC status:public\|Submitter Id:E MTAB 7476:R3wB\|age:3\|broker name:ArrayExpress\|common name:zebrafish\|developmental stage:adult\|genotype:wild type genotype\|individual:3\|organism part:brain\|sample name:E MTAB 7476:R3wB\|scientific name:Danio rerio\|sex:female\|strain:tu	Illumina HiSeq 4000 paired end sequencing; RNA Seq of Danio9 species	E MTAB 7476:R3wB p	R3wB p	RNA Seq of Danionine species	Organs were sampled and snap frozen in liquid nitrogen RNA was extracted using Trizol and standard silica membrane protocol Library was constructed using magnetic beads dT to enrich mRNA. post fragmentation the cDNA was synthesized using the mRNA fragments as templates with random hexamer primers.	Experimental Factor: organism:Danio rerio\|Experimental Factor: organism part:brain	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 4000	<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_LABEL>F</READ_LABEL><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_LABEL>R</READ_LABEL><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>	ERP112513	Illumina HiSeq 4000 paired end sequencing; RNA Seq of Danionine species	ENA FIRST PUBLIC:2018 12 05\|ENA LAST UPDATE:2018 12 05	FCHNW2WBBXX_L6_HKZEBodsEAABRAAPEI-205_1.fq.gz FCHNW2WBBXX_L6_HKZEBodsEAABRAAPEI-205_2.fq.gz	fastq fastq	3622698000.0	18113490.0	E MTAB 7476:FCHNW2WBBXX L6 HKZEBodsEAABRAAPEI 205	0:100 1:100	A:988454110;C:825179148;G:816134465;T:992141776;N:788501	100	100	988454110	825179148	816134465	992141776	788501	ERX2986068	ERS2955656	ERA1674470	University of Hamburg, Institute of Zoology, Molecular Animal Physiology\|European Nucleotide Archive	University of Hamburg, Institute of Zoology, Molecular Animal Physiology\|European Nucleotide Archive	2	0.9287	0.92856	0.14723	0.14721	0.6928	0.69469	0.4956	0.49616	100	100	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2018-12-05	Adult	Adult	Brain	Nervous System
9360	9360	ERR2983448	ERX2986064	ERS2955652	ERP112513	PRJEB30097	RNA Seq of Danionine species	E-MTAB-7476	Transcriptome Analysis	Tissues specific transcriptomes of Danio rerio Danio albolineatus and Danio aesculapii Brain Liver and Gonads.	ENA FIRST PUBLIC:2018 12 05\|ENA LAST UPDATE:2018 12 05	Protocols: Organs were sampled and snap frozen in liquid nitrogen RNA was extracted using Trizol and standard silica membrane protocol Library was constructed using magnetic beads dT to enrich mRNA. post fragmentation the cDNA was synthesized using the mRNA fragments as templates with random hexamer primers.	R1wB	SAMEA5147907	University of Hamburg, Institute of Zoology, Molecular Animal Physiology	ENA FIRST PUBLIC:2018 12 05T17:02:27Z\|ENA LAST UPDATE:2018 12 05T10:01:48Z\|External Id:SAMEA5147907\|INSDC center name:University of Hamburg Institute of Zoology Molecular Animal Physiology\|INSDC first public:2018 12 05T17:02:27Z\|INSDC last update:2018 12 05T10:01:48Z\|INSDC status:public\|Submitter Id:E MTAB 7476:R1wB\|age:3\|broker name:ArrayExpress\|common name:zebrafish\|developmental stage:adult\|genotype:wild type genotype\|individual:1\|organism part:brain\|sample name:E MTAB 7476:R1wB\|scientific name:Danio rerio\|sex:female\|strain:tu	Illumina HiSeq 4000 paired end sequencing; RNA Seq of Danio9 species	E MTAB 7476:R1wB p	R1wB p	RNA Seq of Danionine species	Organs were sampled and snap frozen in liquid nitrogen RNA was extracted using Trizol and standard silica membrane protocol Library was constructed using magnetic beads dT to enrich mRNA. post fragmentation the cDNA was synthesized using the mRNA fragments as templates with random hexamer primers.	Experimental Factor: organism:Danio rerio\|Experimental Factor: organism part:brain	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 4000	<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_LABEL>F</READ_LABEL><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_LABEL>R</READ_LABEL><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>	ERP112513	Illumina HiSeq 4000 paired end sequencing; RNA Seq of Danionine species	ENA FIRST PUBLIC:2018 12 05\|ENA LAST UPDATE:2018 12 05	FCHNW2WBBXX_L6_HKZEBodsEAAARAAPEI-202_1.fq.gz FCHNW2WBBXX_L6_HKZEBodsEAAARAAPEI-202_2.fq.gz	fastq fastq	3345687800.0	16728439.0	E MTAB 7476:FCHNW2WBBXX L6 HKZEBodsEAAARAAPEI 202	0:100 1:100	A:879841532;C:789462135;G:789187239;T:886468300;N:728594	100	100	879841532	789462135	789187239	886468300	728594	ERX2986064	ERS2955652	ERA1674470	University of Hamburg, Institute of Zoology, Molecular Animal Physiology\|European Nucleotide Archive	University of Hamburg, Institute of Zoology, Molecular Animal Physiology\|European Nucleotide Archive	2	0.96514	0.96503	0.0325	0.0326	0.78967	0.79204	0.25943	0.26683	100	100	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2018-12-05	Adult	Adult	Brain	Nervous System
11046	11046	ERR10476843	ERX9997186	ERS13672511	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	star:bPAC / whole brain pooled 3 brains	star:bPAC / whole brain day120+LD stress	SAMEA111562655	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:star neg LD 2\|collection date:2019 12\|common name:zebrafish\|dev stage:120 dpf\|geographic location country and/or sea:Germany\|sample name:star neg LD 2\|scientific name:Danio rerio\|sex:female\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:198 283105	Sample 0256 122 FR NSP TR1 SL1	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_122_FR_NSP_TR1_SL1_S51_L001_R1_001-pooled.fastq.gz 0256_122_FR_NSP_TR1_SL1_S51_L001_R2_001-pooled.fastq.gz	fastq fastq	3396097242.0	33295071.0	ena RUN TAB 09 11 2022 11:52:59:199 283106	0:51 1:51	A:937395652;C:754621322;G:762999709;T:941041776;N:38783	51	51	937395652	754621322	762999709	941041776	38783	ERX9997186	ERS13672511	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Adult	Adult	Brain	Nervous System
11047	11047	ERR10476807	ERX9997150	ERS13672475	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	star:bPAC+/ whole brain pooled 15 brains	star:bPAC+/ whole brain day6	SAMEA111562619	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:star pos d6 1\|collection date:2019 12\|common name:zebrafish\|dev stage:6 dpf\|geographic location country and/or sea:Germany\|sample name:star pos d6 1\|scientific name:Danio rerio\|sex:N/A\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:183 283033	Sample 0256 076 FR NSP TR1 SL1	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_076_FR_NSP_TR1_SL1_S7_L001_R1_001-pooled.fastq.gz 0256_076_FR_NSP_TR1_SL1_S7_L001_R2_001-pooled.fastq.gz	fastq fastq	2974117224.0	29158012.0	ena RUN TAB 09 11 2022 11:52:59:183 283034	0:51 1:51	A:816102587;C:662715848;G:672777315;T:822487687;N:33787	51	51	816102587	662715848	672777315	822487687	33787	ERX9997150	ERS13672475	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Larval	Larval	Brain	Nervous System
11048	11048	ERR10476845	ERX9997188	ERS13672513	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	star:bPAC / whole brain pooled 3 brains	star:bPAC / whole brain day120+LD stress	SAMEA111562657	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:star neg LD 4\|collection date:2019 12\|common name:zebrafish\|dev stage:120 dpf\|geographic location country and/or sea:Germany\|sample name:star neg LD 4\|scientific name:Danio rerio\|sex:female\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:199 283109	Sample 0256 124 FR NSP TR1 SL1	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_124_FR_NSP_TR1_SL1_S53_L001_R1_001-pooled.fastq.gz 0256_124_FR_NSP_TR1_SL1_S53_L001_R2_001-pooled.fastq.gz	fastq fastq	2964111330.0	29059915.0	ena RUN TAB 09 11 2022 11:52:59:199 283110	0:51 1:51	A:822335161;C:651614200;G:667534457;T:822593427;N:34085	51	51	822335161	651614200	667534457	822593427	34085	ERX9997188	ERS13672513	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Adult	Adult	Brain	Nervous System
11049	11049	ERR10476819	ERX9997162	ERS13672487	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	star:bPAC+/ whole brain pooled 3 brains	star:bPAC+/ whole brain day120	SAMEA111562631	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:star pos d120 3\|collection date:2019 12\|common name:zebrafish\|dev stage:120 dpf\|geographic location country and/or sea:Germany\|sample name:star pos d120 3\|scientific name:Danio rerio\|sex:female\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:188 283057	Sample 0256 093 FR NSP TR1 SL1	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_093_FR_NSP_TR1_SL1_S24_L001_R1_001-pooled.fastq.gz 0256_093_FR_NSP_TR1_SL1_S24_L001_R2_001-pooled.fastq.gz	fastq fastq	3376444086.0	33102393.0	ena RUN TAB 09 11 2022 11:52:59:188 283058	0:51 1:51	A:938993037;C:741979766;G:744362740;T:951069922;N:38621	51	51	938993037	741979766	744362740	951069922	38621	ERX9997162	ERS13672487	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Adult	Adult	Brain	Nervous System
11050	11050	ERR10476814	ERX9997157	ERS13672482	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	star:bPAC+/ whole brain pooled 15 brains	star:bPAC+/ whole brain day13	SAMEA111562626	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:star pos d13 3\|collection date:2019 12\|common name:zebrafish\|dev stage:13 dpf\|geographic location country and/or sea:Germany\|sample name:star pos d13 3\|scientific name:Danio rerio\|sex:N/A\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:186 283047	Sample 0256 083 FR NSP TR2 SL1	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_083_FR_NSP_TR2_SL1_S14_L001_R1_001-pooled.fastq.gz 0256_083_FR_NSP_TR2_SL1_S14_L001_R2_001-pooled.fastq.gz	fastq fastq	5492667156.0	53849678.0	ena RUN TAB 09 11 2022 11:52:59:186 283048	0:51 1:51	A:1546610275;C:1178241230;G:1195797489;T:1571955787;N:62375	51	51	1546610275	1178241230	1195797489	1571955787	62375	ERX9997157	ERS13672482	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Larval	Larval	Brain	Nervous System
11051	11051	ERR10476829	ERX9997172	ERS13672497	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	star:bPAC / whole brain pooled 15 brains	star:bPAC / whole brain day6	SAMEA111562641	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:star neg d6 3\|collection date:2019 12\|common name:zebrafish\|dev stage:6 dpf\|geographic location country and/or sea:Germany\|sample name:star neg d6 3\|scientific name:Danio rerio\|sex:N/A\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:192 283077	Sample 0256 103 FR NSP TR1 SL1	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_103_FR_NSP_TR1_SL1_S32_L001_R1_001-pooled.fastq.gz 0256_103_FR_NSP_TR1_SL1_S32_L001_R2_001-pooled.fastq.gz	fastq fastq	3120070248.0	30588924.0	ena RUN TAB 09 11 2022 11:52:59:193 283078	0:51 1:51	A:846274026;C:707353227;G:707836608;T:858570820;N:35567	51	51	846274026	707353227	707836608	858570820	35567	ERX9997172	ERS13672497	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Larval	Larval	Brain	Nervous System
11052	11052	ERR10476798	ERX9997141	ERS13672466	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	wildtype whole brain pooled 3 brains	wildtype whole brain day120	SAMEA111562610	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:tu wt d120 2\|collection date:2019 12\|common name:zebrafish\|dev stage:120 dpf\|geographic location country and/or sea:Germany\|sample name:tu wt d120 2\|scientific name:Danio rerio\|sex:female\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:179 283015	Sample 0256 017 FR NSP TR1 SL1	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_017_FR_NSP_TR1_SL1_S28_L001_R1_001-pooled.fastq.gz 0256_017_FR_NSP_TR1_SL1_S28_L001_R2_001-pooled.fastq.gz	fastq fastq	2721824508.0	26684554.0	ena RUN TAB 09 11 2022 11:52:59:179 283016	0:51 1:51	A:743316669;C:608895552;G:628493804;T:741025191;N:93292	51	51	743316669	608895552	628493804	741025191	93292	ERX9997141	ERS13672466	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Adult	Adult	Brain	Nervous System
11053	11053	ERR10476796	ERX9997139	ERS13672464	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	wildtype whole brain pooled 15 brains	wildtype whole brain day13	SAMEA111562608	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:tu wt d13 5\|collection date:2019 12\|common name:zebrafish\|dev stage:13 dpf\|geographic location country and/or sea:Germany\|sample name:tu wt d13 5\|scientific name:Danio rerio\|sex:N/A\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:178 283011	Sample 0256 010 FR NSP TR1 SL1	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_010_FR_NSP_TR1_SL1_S21_L001_R1_001-pooled.fastq.gz 0256_010_FR_NSP_TR1_SL1_S21_L001_R2_001-pooled.fastq.gz	fastq fastq	2969687772.0	29114586.0	ena RUN TAB 09 11 2022 11:52:59:179 283012	0:51 1:51	A:762435544;C:713336460;G:731717998;T:762096042;N:101728	51	51	762435544	713336460	731717998	762096042	101728	ERX9997139	ERS13672464	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Larval	Larval	Brain	Nervous System
11054	11054	ERR10476824	ERX9997167	ERS13672492	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	star:bPAC+/ whole brain pooled 3 brains	star:bPAC+/ whole brain day120+LD stress	SAMEA111562636	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:star pos LD 3\|collection date:2019 12\|common name:zebrafish\|dev stage:120 dpf\|geographic location country and/or sea:Germany\|sample name:star pos LD 3\|scientific name:Danio rerio\|sex:female\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:190 283067	Sample 0256 098 FR NSP TR1 SL1	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_098_FR_NSP_TR1_SL1_S25_L001_R1_001-pooled.fastq.gz 0256_098_FR_NSP_TR1_SL1_S25_L001_R2_001-pooled.fastq.gz	fastq fastq	2446755498.0	23987799.0	ena RUN TAB 09 11 2022 11:52:59:190 283068	0:51 1:51	A:690730956;C:529182577;G:529532770;T:697255685;N:53510	51	51	690730956	529182577	529532770	697255685	53510	ERX9997167	ERS13672492	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Adult	Adult	Brain	Nervous System
11055	11055	ERR10476836	ERX9997179	ERS13672504	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	star:bPAC / whole brain pooled 15 brains	star:bPAC / whole brain day13	SAMEA111562648	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:star neg d13 5\|collection date:2019 12\|common name:zebrafish\|dev stage:13 dpf\|geographic location country and/or sea:Germany\|sample name:star neg d13 5\|scientific name:Danio rerio\|sex:N/A\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:195 283091	Sample 0256 110 FR NSP TR2 SL1	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_110_FR_NSP_TR2_SL1_S39_L001_R1_001-pooled.fastq.gz 0256_110_FR_NSP_TR2_SL1_S39_L001_R2_001-pooled.fastq.gz	fastq fastq	2758547160.0	27044580.0	ena RUN TAB 09 11 2022 11:52:59:196 283092	0:51 1:51	A:732517446;C:640766914;G:643632251;T:741598802;N:31747	51	51	732517446	640766914	643632251	741598802	31747	ERX9997179	ERS13672504	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Larval	Larval	Brain	Nervous System
11056	11056	ERR10476808	ERX9997151	ERS13672476	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	star:bPAC+/ whole brain pooled 15 brains	star:bPAC+/ whole brain day6	SAMEA111562620	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:star pos d6 2\|collection date:2019 12\|common name:zebrafish\|dev stage:6 dpf\|geographic location country and/or sea:Germany\|sample name:star pos d6 2\|scientific name:Danio rerio\|sex:N/A\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:184 283035	Sample 0256 077 FR NSP TR1 SL1	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_077_FR_NSP_TR1_SL1_S8_L001_R1_001-pooled.fastq.gz 0256_077_FR_NSP_TR1_SL1_S8_L001_R2_001-pooled.fastq.gz	fastq fastq	3595088328.0	35245964.0	ena RUN TAB 09 11 2022 11:52:59:184 283036	0:51 1:51	A:985480827;C:803117311;G:811895458;T:994553698;N:41034	51	51	985480827	803117311	811895458	994553698	41034	ERX9997151	ERS13672476	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Larval	Larval	Brain	Nervous System
11057	11057	ERR10476818	ERX9997161	ERS13672486	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	star:bPAC+/ whole brain pooled 3 brains	star:bPAC+/ whole brain day120	SAMEA111562630	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:star pos d120 2\|collection date:2019 12\|common name:zebrafish\|dev stage:120 dpf\|geographic location country and/or sea:Germany\|sample name:star pos d120 2\|scientific name:Danio rerio\|sex:female\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:188 283055	Sample 0256 092 FR NSP TR1 SL1	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_092_FR_NSP_TR1_SL1_S23_L001_R1_001-pooled.fastq.gz 0256_092_FR_NSP_TR1_SL1_S23_L001_R2_001-pooled.fastq.gz	fastq fastq	2928003330.0	28705915.0	ena RUN TAB 09 11 2022 11:52:59:188 283056	0:51 1:51	A:808470746;C:646721298;G:658265207;T:814512506;N:33573	51	51	808470746	646721298	658265207	814512506	33573	ERX9997161	ERS13672486	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Adult	Adult	Brain	Nervous System
11058	11058	ERR10476827	ERX9997170	ERS13672495	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	star:bPAC / whole brain pooled 15 brains	star:bPAC / whole brain day6	SAMEA111562639	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:star neg d6 1\|collection date:2019 12\|common name:zebrafish\|dev stage:6 dpf\|geographic location country and/or sea:Germany\|sample name:star neg d6 1\|scientific name:Danio rerio\|sex:N/A\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:192 283073	Sample 0256 101 FR NSP TR1 SL1	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_101_FR_NSP_TR1_SL1_S30_L001_R1_001-pooled.fastq.gz 0256_101_FR_NSP_TR1_SL1_S30_L001_R2_001-pooled.fastq.gz	fastq fastq	3504125952.0	34354176.0	ena RUN TAB 09 11 2022 11:52:59:192 283074	0:51 1:51	A:947138693;C:797358353;G:798903844;T:960685108;N:39954	51	51	947138693	797358353	798903844	960685108	39954	ERX9997170	ERS13672495	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Larval	Larval	Brain	Nervous System
11059	11059	ERR10476801	ERX9997144	ERS13672469	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	wildtype whole brain pooled 3 brains	wildtype whole brain day120	SAMEA111562613	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:tu wt d120 5\|collection date:2019 12\|common name:zebrafish\|dev stage:120 dpf\|geographic location country and/or sea:Germany\|sample name:tu wt d120 5\|scientific name:Danio rerio\|sex:female\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:181 283021	Sample 0256 020 FR NSP TR1 SL1	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_020_FR_NSP_TR1_SL1_S31_L001_R1_001-pooled.fastq.gz 0256_020_FR_NSP_TR1_SL1_S31_L001_R2_001-pooled.fastq.gz	fastq fastq	3216177708.0	31531154.0	ena RUN TAB 09 11 2022 11:52:59:181 283022	0:51 1:51	A:880463840;C:718401986;G:738221226;T:878980905;N:109751	51	51	880463840	718401986	738221226	878980905	109751	ERX9997144	ERS13672469	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Adult	Adult	Brain	Nervous System
11060	11060	ERR10476794	ERX9997137	ERS13672462	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	wildtype whole brain pooled 15 brains	wildtype whole brain day13	SAMEA111562606	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:tu wt d13 3\|collection date:2019 12\|common name:zebrafish\|dev stage:13 dpf\|geographic location country and/or sea:Germany\|sample name:tu wt d13 3\|scientific name:Danio rerio\|sex:N/A\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:178 283007	Sample 0256 008 FR NSP TR1 SL1	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_008_FR_NSP_TR1_SL1_S1_L001_R1_001-pooled.fastq.gz 0256_008_FR_NSP_TR1_SL1_S1_L001_R2_001-pooled.fastq.gz	fastq fastq	2659023618.0	26068859.0	ena RUN TAB 09 11 2022 11:52:59:178 283008	0:51 1:51	A:670947753;C:637136773;G:677570266;T:673338670;N:30156	51	51	670947753	637136773	677570266	673338670	30156	ERX9997137	ERS13672462	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Larval	Larval	Brain	Nervous System
11061	11061	ERR10476833	ERX9997176	ERS13672501	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	star:bPAC / whole brain pooled 15 brains	star:bPAC / whole brain day13	SAMEA111562645	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:star neg d13 2\|collection date:2019 12\|common name:zebrafish\|dev stage:13 dpf\|geographic location country and/or sea:Germany\|sample name:star neg d13 2\|scientific name:Danio rerio\|sex:N/A\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:194 283085	Sample 0256 107 FR NSP TR2 SL1	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_107_FR_NSP_TR2_SL1_S36_L001_R1_001-pooled.fastq.gz 0256_107_FR_NSP_TR2_SL1_S36_L001_R2_001-pooled.fastq.gz	fastq fastq	3282322362.0	32179631.0	ena RUN TAB 09 11 2022 11:52:59:194 283086	0:51 1:51	A:898607442;C:734331926;G:739939203;T:909406172;N:37619	51	51	898607442	734331926	739939203	909406172	37619	ERX9997176	ERS13672501	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Larval	Larval	Brain	Nervous System
11062	11062	ERR10476817	ERX9997160	ERS13672485	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	star:bPAC+/ whole brain pooled 3 brains	star:bPAC+/ whole brain day120	SAMEA111562629	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:star pos d120 1\|collection date:2019 12\|common name:zebrafish\|dev stage:120 dpf\|geographic location country and/or sea:Germany\|sample name:star pos d120 1\|scientific name:Danio rerio\|sex:female\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:187 283053	Sample 0256 091 FR NSP TR1 SL1	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_091_FR_NSP_TR1_SL1_S22_L001_R1_001-pooled.fastq.gz 0256_091_FR_NSP_TR1_SL1_S22_L001_R2_001-pooled.fastq.gz	fastq fastq	3195884706.0	31332203.0	ena RUN TAB 09 11 2022 11:52:59:188 283054	0:51 1:51	A:874879226;C:712315108;G:728957349;T:879696554;N:36469	51	51	874879226	712315108	728957349	879696554	36469	ERX9997160	ERS13672485	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Adult	Adult	Brain	Nervous System
11063	11063	ERR10476828	ERX9997171	ERS13672496	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	star:bPAC / whole brain pooled 15 brains	star:bPAC / whole brain day6	SAMEA111562640	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:star neg d6 2\|collection date:2019 12\|common name:zebrafish\|dev stage:6 dpf\|geographic location country and/or sea:Germany\|sample name:star neg d6 2\|scientific name:Danio rerio\|sex:N/A\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:192 283075	Sample 0256 102 FR NSP TR1 SL1	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_102_FR_NSP_TR1_SL1_S31_L001_R1_001-pooled.fastq.gz 0256_102_FR_NSP_TR1_SL1_S31_L001_R2_001-pooled.fastq.gz	fastq fastq	3969901404.0	38920602.0	ena RUN TAB 09 11 2022 11:52:59:192 283076	0:51 1:51	A:1079447747;C:894502841;G:908706945;T:1087198510;N:45361	51	51	1079447747	894502841	908706945	1087198510	45361	ERX9997171	ERS13672496	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Larval	Larval	Brain	Nervous System
11064	11064	ERR10476821	ERX9997164	ERS13672489	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	star:bPAC+/ whole brain pooled 3 brains	star:bPAC+/ whole brain day120	SAMEA111562633	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:star pos d120 5\|collection date:2019 12\|common name:zebrafish\|dev stage:120 dpf\|geographic location country and/or sea:Germany\|sample name:star pos d120 5\|scientific name:Danio rerio\|sex:female\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:189 283061	Sample 0256 095 FR NSP TR1 SL1	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_095_FR_NSP_TR1_SL1_S26_L001_R1_001-pooled.fastq.gz 0256_095_FR_NSP_TR1_SL1_S26_L001_R2_001-pooled.fastq.gz	fastq fastq	3213304572.0	31502986.0	ena RUN TAB 09 11 2022 11:52:59:189 283062	0:51 1:51	A:891513837;C:705036538;G:716947743;T:899770077;N:36377	51	51	891513837	705036538	716947743	899770077	36377	ERX9997164	ERS13672489	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Adult	Adult	Brain	Nervous System
11065	11065	ERR10476823	ERX9997166	ERS13672491	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	star:bPAC+/ whole brain pooled 3 brains	star:bPAC+/ whole brain day120+LD stress	SAMEA111562635	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:star pos LD 2\|collection date:2019 12\|common name:zebrafish\|dev stage:120 dpf\|geographic location country and/or sea:Germany\|sample name:star pos LD 2\|scientific name:Danio rerio\|sex:female\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:190 283065	Sample 0256 097 FR NSP TR1 SL1	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_097_FR_NSP_TR1_SL1_S24_L001_R1_001-pooled.fastq.gz 0256_097_FR_NSP_TR1_SL1_S24_L001_R2_001-pooled.fastq.gz	fastq fastq	2641036224.0	25892512.0	ena RUN TAB 09 11 2022 11:52:59:190 283066	0:51 1:51	A:757894363;C:555348260;G:569783120;T:757953770;N:56711	51	51	757894363	555348260	569783120	757953770	56711	ERX9997166	ERS13672491	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Adult	Adult	Brain	Nervous System
11066	11066	ERR10476806	ERX9997149	ERS13672474	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	wildtype whole brain pooled 3 brains	wildtype whole brain day120+LD stress	SAMEA111562618	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:tu wt LD 5\|collection date:2019 12\|common name:zebrafish\|dev stage:120 dpf\|geographic location country and/or sea:Germany\|sample name:tu wt LD 5\|scientific name:Danio rerio\|sex:female\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:183 283031	Sample 0256 025 FR NSP TR1 SL1	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_025_FR_NSP_TR1_SL1_S13_L001_R1_001-pooled.fastq.gz 0256_025_FR_NSP_TR1_SL1_S13_L001_R2_001-pooled.fastq.gz	fastq fastq	3305999418.0	32411759.0	ena RUN TAB 09 11 2022 11:52:59:183 283032	0:51 1:51	A:895024301;C:741182319;G:782231299;T:887499120;N:62379	51	51	895024301	741182319	782231299	887499120	62379	ERX9997149	ERS13672474	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Adult	Adult	Brain	Nervous System
11067	11067	ERR10476846	ERX9997189	ERS13672514	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	star:bPAC / whole brain pooled 3 brains	star:bPAC / whole brain day120+LD stress	SAMEA111562658	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:star neg LD 5\|collection date:2019 12\|common name:zebrafish\|dev stage:120 dpf\|geographic location country and/or sea:Germany\|sample name:star neg LD 5\|scientific name:Danio rerio\|sex:female\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:200 283111	Sample 0256 125 FR NSP TR1 SL1	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_125_FR_NSP_TR1_SL1_S54_L001_R1_001-pooled.fastq.gz 0256_125_FR_NSP_TR1_SL1_S54_L001_R2_001-pooled.fastq.gz	fastq fastq	3282595008.0	32182304.0	ena RUN TAB 09 11 2022 11:52:59:200 283112	0:51 1:51	A:911207196;C:721152291;G:734350131;T:915848066;N:37324	51	51	911207196	721152291	734350131	915848066	37324	ERX9997189	ERS13672514	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Adult	Adult	Brain	Nervous System
11068	11068	ERR10476790	ERX9997133	ERS13672458	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	wildtype whole brain pooled 15 brains	wildtype whole brain day6	SAMEA111562602	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:tu wt d6 4\|collection date:2019 12\|common name:zebrafish\|dev stage:6 dpf\|geographic location country and/or sea:Germany\|sample name:tu wt d6 4\|scientific name:Danio rerio\|sex:N/A\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:176 282999	Sample 0256 004 FR NSP TR1 SL1	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_004_FR_NSP_TR1_SL1_S16_L001_R1_001-pooled.fastq.gz 0256_004_FR_NSP_TR1_SL1_S16_L001_R2_001-pooled.fastq.gz	fastq fastq	2693489520.0	26406760.0	ena RUN TAB 09 11 2022 11:52:59:176 283000	0:51 1:51	A:701762127;C:639663261;G:643729664;T:708242984;N:91484	51	51	701762127	639663261	643729664	708242984	91484	ERX9997133	ERS13672458	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Larval	Larval	Brain	Nervous System
11069	11069	ERR10476797	ERX9997140	ERS13672465	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	wildtype whole brain pooled 3 brains	wildtype whole brain day120	SAMEA111562609	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:tu wt d120 1\|collection date:2019 12\|common name:zebrafish\|dev stage:120 dpf\|geographic location country and/or sea:Germany\|sample name:tu wt d120 1\|scientific name:Danio rerio\|sex:female\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:179 283013	Sample 0256 016 FR NSP TR1 SL1	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_016_FR_NSP_TR1_SL1_S27_L001_R1_001-pooled.fastq.gz 0256_016_FR_NSP_TR1_SL1_S27_L001_R2_001-pooled.fastq.gz	fastq fastq	3238524072.0	31750236.0	ena RUN TAB 09 11 2022 11:52:59:179 283014	0:51 1:51	A:879431740;C:727298145;G:750466237;T:881218913;N:109037	51	51	879431740	727298145	750466237	881218913	109037	ERX9997140	ERS13672465	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Adult	Adult	Brain	Nervous System
11070	11070	ERR10476791	ERX9997134	ERS13672459	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	wildtype whole brain pooled 15 brains	wildtype whole brain day6	SAMEA111562603	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:tu wt d6 5\|collection date:2019 12\|common name:zebrafish\|dev stage:6 dpf\|geographic location country and/or sea:Germany\|sample name:tu wt d6 5\|scientific name:Danio rerio\|sex:N/A\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:176 283001	Sample 0256 005 FR NSP TR1 SL1	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_005_FR_NSP_TR1_SL1_S17_L001_R1_001-pooled.fastq.gz 0256_005_FR_NSP_TR1_SL1_S17_L001_R2_001-pooled.fastq.gz	fastq fastq	2904430620.0	28474810.0	ena RUN TAB 09 11 2022 11:52:59:176 283002	0:51 1:51	A:777892611;C:666758312;G:672026589;T:787654140;N:98968	51	51	777892611	666758312	672026589	787654140	98968	ERX9997134	ERS13672459	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Larval	Larval	Brain	Nervous System
11071	11071	ERR10476837	ERX9997180	ERS13672505	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	star:bPAC / whole brain pooled 3 brains	star:bPAC / whole brain day120	SAMEA111562649	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:star neg d120 1\|collection date:2019 12\|common name:zebrafish\|dev stage:120 dpf\|geographic location country and/or sea:Germany\|sample name:star neg d120 1\|scientific name:Danio rerio\|sex:female\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:196 283093	Sample 0256 116 FR NSP TR1 SL1	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_116_FR_NSP_TR1_SL1_S45_L001_R1_001-pooled.fastq.gz 0256_116_FR_NSP_TR1_SL1_S45_L001_R2_001-pooled.fastq.gz	fastq fastq	3223186638.0	31599869.0	ena RUN TAB 09 11 2022 11:52:59:196 283094	0:51 1:51	A:887593868;C:714750043;G:727286570;T:893518987;N:37170	51	51	887593868	714750043	727286570	893518987	37170	ERX9997180	ERS13672505	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Adult	Adult	Brain	Nervous System
11072	11072	ERR10476844	ERX9997187	ERS13672512	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	star:bPAC / whole brain pooled 3 brains	star:bPAC / whole brain day120+LD stress	SAMEA111562656	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:star neg LD 3\|collection date:2019 12\|common name:zebrafish\|dev stage:120 dpf\|geographic location country and/or sea:Germany\|sample name:star neg LD 3\|scientific name:Danio rerio\|sex:female\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:199 283107	Sample 0256 123 FR NSP TR1 SL2	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_123_FR_NSP_TR1_SL2_S52_L001_R1_001-pooled.fastq.gz 0256_123_FR_NSP_TR1_SL2_S52_L001_R2_001-pooled.fastq.gz	fastq fastq	3363995598.0	32980349.0	ena RUN TAB 09 11 2022 11:52:59:199 283108	0:51 1:51	A:911801682;C:754249392;G:775610326;T:922295915;N:38283	51	51	911801682	754249392	775610326	922295915	38283	ERX9997187	ERS13672512	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Adult	Adult	Brain	Nervous System
11073	11073	ERR10476841	ERX9997184	ERS13672509	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	star:bPAC / whole brain pooled 3 brains	star:bPAC / whole brain day120	SAMEA111562653	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:star neg d120 5\|collection date:2019 12\|common name:zebrafish\|dev stage:120 dpf\|geographic location country and/or sea:Germany\|sample name:star neg d120 5\|scientific name:Danio rerio\|sex:female\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:198 283101	Sample 0256 120 FR NSP TR1 SL1	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_120_FR_NSP_TR1_SL1_S49_L001_R1_001-pooled.fastq.gz 0256_120_FR_NSP_TR1_SL1_S49_L001_R2_001-pooled.fastq.gz	fastq fastq	3183097374.0	31206837.0	ena RUN TAB 09 11 2022 11:52:59:198 283102	0:51 1:51	A:877463150;C:706812545;G:717353252;T:881432047;N:36380	51	51	877463150	706812545	717353252	881432047	36380	ERX9997184	ERS13672509	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Adult	Adult	Brain	Nervous System
11074	11074	ERR10476788	ERX9997131	ERS13672456	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	wildtype whole brain pooled 15 brains	wildtype whole brain day6	SAMEA111562600	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:tu wt d6 2\|collection date:2019 12\|common name:zebrafish\|dev stage:6 dpf\|geographic location country and/or sea:Germany\|sample name:tu wt d6 2\|scientific name:Danio rerio\|sex:N/A\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:175 282995	Sample 0256 002 FR NSP TR1 SL1	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_002_FR_NSP_TR1_SL1_S14_L001_R1_001-pooled.fastq.gz 0256_002_FR_NSP_TR1_SL1_S14_L001_R2_001-pooled.fastq.gz	fastq fastq	2385303456.0	23385328.0	ena RUN TAB 09 11 2022 11:52:59:175 282996	0:51 1:51	A:620601269;C:567608030;G:568555174;T:628457831;N:81152	51	51	620601269	567608030	568555174	628457831	81152	ERX9997131	ERS13672456	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Larval	Larval	Brain	Nervous System
11075	11075	ERR10476825	ERX9997168	ERS13672493	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	star:bPAC+/ whole brain pooled 3 brains	star:bPAC+/ whole brain day120+LD stress	SAMEA111562637	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:star pos LD 4\|collection date:2019 12\|common name:zebrafish\|dev stage:120 dpf\|geographic location country and/or sea:Germany\|sample name:star pos LD 4\|scientific name:Danio rerio\|sex:female\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:191 283069	Sample 0256 099 FR NSP TR1 SL1	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_099_FR_NSP_TR1_SL1_S28_L001_R1_001-pooled.fastq.gz 0256_099_FR_NSP_TR1_SL1_S28_L001_R2_001-pooled.fastq.gz	fastq fastq	3076257270.0	30159385.0	ena RUN TAB 09 11 2022 11:52:59:191 283070	0:51 1:51	A:873464149;C:655660863;G:671402896;T:875694442;N:34920	51	51	873464149	655660863	671402896	875694442	34920	ERX9997168	ERS13672493	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Adult	Adult	Brain	Nervous System
11076	11076	ERR10476842	ERX9997185	ERS13672510	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	star:bPAC / whole brain pooled 3 brains	star:bPAC / whole brain day120+LD stress	SAMEA111562654	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:star neg LD 1\|collection date:2019 12\|common name:zebrafish\|dev stage:120 dpf\|geographic location country and/or sea:Germany\|sample name:star neg LD 1\|scientific name:Danio rerio\|sex:female\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:198 283103	Sample 0256 121 FR NSP TR1 SL1	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_121_FR_NSP_TR1_SL1_S50_L001_R1_001-pooled.fastq.gz 0256_121_FR_NSP_TR1_SL1_S50_L001_R2_001-pooled.fastq.gz	fastq fastq	2812259034.0	27571167.0	ena RUN TAB 09 11 2022 11:52:59:198 283104	0:51 1:51	A:777159410;C:623161405;G:635673358;T:776232920;N:31941	51	51	777159410	623161405	635673358	776232920	31941	ERX9997185	ERS13672510	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Adult	Adult	Brain	Nervous System
11077	11077	ERR10476816	ERX9997159	ERS13672484	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	star:bPAC+/ whole brain pooled 15 brains	star:bPAC+/ whole brain day13	SAMEA111562628	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:star pos d13 5\|collection date:2019 12\|common name:zebrafish\|dev stage:13 dpf\|geographic location country and/or sea:Germany\|sample name:star pos d13 5\|scientific name:Danio rerio\|sex:N/A\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:187 283051	Sample 0256 085 FR NSP TRP SL1	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_085_FR_NSP_TRP_SL1_S16_L001_R1_001-pooled.fastq.gz 0256_085_FR_NSP_TRP_SL1_S16_L001_R2_001-pooled.fastq.gz	fastq fastq	3264856596.0	32008398.0	ena RUN TAB 09 11 2022 11:52:59:187 283052	0:51 1:51	A:908889213;C:708892816;G:727180747;T:919857088;N:36732	51	51	908889213	708892816	727180747	919857088	36732	ERX9997159	ERS13672484	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Larval	Larval	Brain	Nervous System
11078	11078	ERR10476813	ERX9997156	ERS13672481	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	star:bPAC+/ whole brain pooled 15 brains	star:bPAC+/ whole brain day13	SAMEA111562625	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:star pos d13 2\|collection date:2019 12\|common name:zebrafish\|dev stage:13 dpf\|geographic location country and/or sea:Germany\|sample name:star pos d13 2\|scientific name:Danio rerio\|sex:N/A\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:186 283045	Sample 0256 082 FR NSP TR2 SL1	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_082_FR_NSP_TR2_SL1_S13_L001_R1_001-pooled.fastq.gz 0256_082_FR_NSP_TR2_SL1_S13_L001_R2_001-pooled.fastq.gz	fastq fastq	3037654248.0	29780924.0	ena RUN TAB 09 11 2022 11:52:59:186 283046	0:51 1:51	A:859112641;C:645943863;G:660257800;T:872305592;N:34352	51	51	859112641	645943863	660257800	872305592	34352	ERX9997156	ERS13672481	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Larval	Larval	Brain	Nervous System
11079	11079	ERR10476832	ERX9997175	ERS13672500	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	star:bPAC / whole brain pooled 15 brains	star:bPAC / whole brain day13	SAMEA111562644	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:star neg d13 1\|collection date:2019 12\|common name:zebrafish\|dev stage:13 dpf\|geographic location country and/or sea:Germany\|sample name:star neg d13 1\|scientific name:Danio rerio\|sex:N/A\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:194 283083	Sample 0256 106 FR NSP TR1 SL1	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_106_FR_NSP_TR1_SL1_S35_L001_R1_001-pooled.fastq.gz 0256_106_FR_NSP_TR1_SL1_S35_L001_R2_001-pooled.fastq.gz	fastq fastq	2761703040.0	27075520.0	ena RUN TAB 09 11 2022 11:52:59:194 283084	0:51 1:51	A:761065450;C:610246142;G:622228689;T:768131440;N:31319	51	51	761065450	610246142	622228689	768131440	31319	ERX9997175	ERS13672500	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Larval	Larval	Brain	Nervous System
11080	11080	ERR10476810	ERX9997153	ERS13672478	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	star:bPAC+/ whole brain pooled 15 brains	star:bPAC+/ whole brain day6	SAMEA111562622	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:star pos d6 4\|collection date:2019 12\|common name:zebrafish\|dev stage:6 dpf\|geographic location country and/or sea:Germany\|sample name:star pos d6 4\|scientific name:Danio rerio\|sex:N/A\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:184 283039	Sample 0256 079 FR NSP TR1 SL1	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_079_FR_NSP_TR1_SL1_S10_L001_R1_001-pooled.fastq.gz 0256_079_FR_NSP_TR1_SL1_S10_L001_R2_001-pooled.fastq.gz	fastq fastq	2745379674.0	26915487.0	ena RUN TAB 09 11 2022 11:52:59:185 283040	0:51 1:51	A:762974242;C:602287296;G:611894421;T:768192503;N:31212	51	51	762974242	602287296	611894421	768192503	31212	ERX9997153	ERS13672478	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Larval	Larval	Brain	Nervous System
11081	11081	ERR10476811	ERX9997154	ERS13672479	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	star:bPAC+/ whole brain pooled 15 brains	star:bPAC+/ whole brain day6	SAMEA111562623	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:star pos d6 5\|collection date:2019 12\|common name:zebrafish\|dev stage:6 dpf\|geographic location country and/or sea:Germany\|sample name:star pos d6 5\|scientific name:Danio rerio\|sex:N/A\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:185 283041	Sample 0256 080 FR NSP TR1 SL1	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_080_FR_NSP_TR1_SL1_S11_L001_R1_001-pooled.fastq.gz 0256_080_FR_NSP_TR1_SL1_S11_L001_R2_001-pooled.fastq.gz	fastq fastq	3212151870.0	31491685.0	ena RUN TAB 09 11 2022 11:52:59:185 283042	0:51 1:51	A:890500591;C:706313900;G:715518225;T:899782352;N:36802	51	51	890500591	706313900	715518225	899782352	36802	ERX9997154	ERS13672479	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Larval	Larval	Brain	Nervous System
11082	11082	ERR10476826	ERX9997169	ERS13672494	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	star:bPAC+/ whole brain pooled 3 brains	star:bPAC+/ whole brain day120+LD stress	SAMEA111562638	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:star pos LD 5\|collection date:2019 12\|common name:zebrafish\|dev stage:120 dpf\|geographic location country and/or sea:Germany\|sample name:star pos LD 5\|scientific name:Danio rerio\|sex:female\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:191 283071	Sample 0256 100 FR NSP TR1 SL1	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_100_FR_NSP_TR1_SL1_S29_L001_R1_001-pooled.fastq.gz 0256_100_FR_NSP_TR1_SL1_S29_L001_R2_001-pooled.fastq.gz	fastq fastq	3578369100.0	35082050.0	ena RUN TAB 09 11 2022 11:52:59:191 283072	0:51 1:51	A:1020283131;C:761534114;G:768445361;T:1028065987;N:40507	51	51	1020283131	761534114	768445361	1028065987	40507	ERX9997169	ERS13672494	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Adult	Adult	Brain	Nervous System
11083	11083	ERR10476802	ERX9997145	ERS13672470	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	wildtype whole brain pooled 3 brains	wildtype whole brain day120+LD stress	SAMEA111562614	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:tu wt LD 1\|collection date:2019 12\|common name:zebrafish\|dev stage:120 dpf\|geographic location country and/or sea:Germany\|sample name:tu wt LD 1\|scientific name:Danio rerio\|sex:female\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:181 283023	Sample 0256 021 FR NSP TR1 SL1	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_021_FR_NSP_TR1_SL1_S32_L001_R1_001-pooled.fastq.gz 0256_021_FR_NSP_TR1_SL1_S32_L001_R2_001-pooled.fastq.gz	fastq fastq	2990267394.0	29316347.0	ena RUN TAB 09 11 2022 11:52:59:181 283024	0:51 1:51	A:821947579;C:664213850;G:685635879;T:818367947;N:102139	51	51	821947579	664213850	685635879	818367947	102139	ERX9997145	ERS13672470	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Adult	Adult	Brain	Nervous System
11084	11084	ERR10476799	ERX9997142	ERS13672467	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	wildtype whole brain pooled 3 brains	wildtype whole brain day120	SAMEA111562611	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:tu wt d120 3\|collection date:2019 12\|common name:zebrafish\|dev stage:120 dpf\|geographic location country and/or sea:Germany\|sample name:tu wt d120 3\|scientific name:Danio rerio\|sex:female\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:180 283017	Sample 0256 018 FR NSP TR1 SL1	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_018_FR_NSP_TR1_SL1_S29_L001_R1_001-pooled.fastq.gz 0256_018_FR_NSP_TR1_SL1_S29_L001_R2_001-pooled.fastq.gz	fastq fastq	2807137614.0	27520957.0	ena RUN TAB 09 11 2022 11:52:59:180 283018	0:51 1:51	A:773248982;C:621078395;G:638119915;T:774593844;N:96478	51	51	773248982	621078395	638119915	774593844	96478	ERX9997142	ERS13672467	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Adult	Adult	Brain	Nervous System
11085	11085	ERR10476809	ERX9997152	ERS13672477	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	star:bPAC+/ whole brain pooled 15 brains	star:bPAC+/ whole brain day6	SAMEA111562621	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:star pos d6 3\|collection date:2019 12\|common name:zebrafish\|dev stage:6 dpf\|geographic location country and/or sea:Germany\|sample name:star pos d6 3\|scientific name:Danio rerio\|sex:N/A\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:184 283037	Sample 0256 078 FR NSP TR1 SL1	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_078_FR_NSP_TR1_SL1_S9_L001_R1_001-pooled.fastq.gz 0256_078_FR_NSP_TR1_SL1_S9_L001_R2_001-pooled.fastq.gz	fastq fastq	3412655106.0	33457403.0	ena RUN TAB 09 11 2022 11:52:59:184 283038	0:51 1:51	A:942783320;C:753155142;G:767154692;T:949522969;N:38983	51	51	942783320	753155142	767154692	949522969	38983	ERX9997152	ERS13672477	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Larval	Larval	Brain	Nervous System
11086	11086	ERR10476789	ERX9997132	ERS13672457	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	wildtype whole brain pooled 15 brains	wildtype whole brain day6	SAMEA111562601	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:tu wt d6 3\|collection date:2019 12\|common name:zebrafish\|dev stage:6 dpf\|geographic location country and/or sea:Germany\|sample name:tu wt d6 3\|scientific name:Danio rerio\|sex:N/A\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:175 282997	Sample 0256 003 FR NSP TR1 SL1	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_003_FR_NSP_TR1_SL1_S15_L001_R1_001-pooled.fastq.gz 0256_003_FR_NSP_TR1_SL1_S15_L001_R2_001-pooled.fastq.gz	fastq fastq	2999816634.0	29409967.0	ena RUN TAB 09 11 2022 11:52:59:176 282998	0:51 1:51	A:771170539;C:720448182;G:729961101;T:778133283;N:103529	51	51	771170539	720448182	729961101	778133283	103529	ERX9997132	ERS13672457	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Larval	Larval	Brain	Nervous System
11087	11087	ERR10476830	ERX9997173	ERS13672498	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	star:bPAC / whole brain pooled 15 brains	star:bPAC / whole brain day6	SAMEA111562642	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:star neg d6 4\|collection date:2019 12\|common name:zebrafish\|dev stage:6 dpf\|geographic location country and/or sea:Germany\|sample name:star neg d6 4\|scientific name:Danio rerio\|sex:N/A\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:193 283079	Sample 0256 104 FR NSP TR1 SL1	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_104_FR_NSP_TR1_SL1_S33_L001_R1_001-pooled.fastq.gz 0256_104_FR_NSP_TR1_SL1_S33_L001_R2_001-pooled.fastq.gz	fastq fastq	2943756210.0	28860355.0	ena RUN TAB 09 11 2022 11:52:59:193 283080	0:51 1:51	A:806343784;C:657990854;G:663721905;T:815666113;N:33554	51	51	806343784	657990854	663721905	815666113	33554	ERX9997173	ERS13672498	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Larval	Larval	Brain	Nervous System
11088	11088	ERR10476835	ERX9997178	ERS13672503	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	star:bPAC / whole brain pooled 15 brains	star:bPAC / whole brain day13	SAMEA111562647	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:star neg d13 4\|collection date:2019 12\|common name:zebrafish\|dev stage:13 dpf\|geographic location country and/or sea:Germany\|sample name:star neg d13 4\|scientific name:Danio rerio\|sex:N/A\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:195 283089	Sample 0256 109 FR NSP TR2 SL1	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_109_FR_NSP_TR2_SL1_S38_L001_R1_001-pooled.fastq.gz 0256_109_FR_NSP_TR2_SL1_S38_L001_R2_001-pooled.fastq.gz	fastq fastq	3406677396.0	33398798.0	ena RUN TAB 09 11 2022 11:52:59:195 283090	0:51 1:51	A:928579532;C:768636951;G:771636154;T:937786376;N:38383	51	51	928579532	768636951	771636154	937786376	38383	ERX9997178	ERS13672503	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Larval	Larval	Brain	Nervous System
11089	11089	ERR10476820	ERX9997163	ERS13672488	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	star:bPAC+/ whole brain pooled 3 brains	star:bPAC+/ whole brain day120	SAMEA111562632	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:star pos d120 4\|collection date:2019 12\|common name:zebrafish\|dev stage:120 dpf\|geographic location country and/or sea:Germany\|sample name:star pos d120 4\|scientific name:Danio rerio\|sex:female\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:189 283059	Sample 0256 094 FR NSP TR1 SL1	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_094_FR_NSP_TR1_SL1_S25_L001_R1_001-pooled.fastq.gz 0256_094_FR_NSP_TR1_SL1_S25_L001_R2_001-pooled.fastq.gz	fastq fastq	3067693350.0	30075425.0	ena RUN TAB 09 11 2022 11:52:59:189 283060	0:51 1:51	A:855716246;C:671014617;G:674396566;T:866531062;N:34859	51	51	855716246	671014617	674396566	866531062	34859	ERX9997163	ERS13672488	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Adult	Adult	Brain	Nervous System
11090	11090	ERR10476787	ERX9997130	ERS13672455	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	wildtype whole brain pooled 15 brains	wildtype whole brain day6	SAMEA111562599	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:tu wt d6 1\|collection date:2019 12\|common name:zebrafish\|dev stage:6 dpf\|geographic location country and/or sea:Germany\|sample name:tu wt d6 1\|scientific name:Danio rerio\|sex:N/A\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:174 282993	Sample 0256 001 FR NSP TR1 SL1	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_001_FR_NSP_TR1_SL1_S13_L001_R1_001-pooled.fastq.gz 0256_001_FR_NSP_TR1_SL1_S13_L001_R2_001-pooled.fastq.gz	fastq fastq	2739613002.0	26858951.0	ena RUN TAB 09 11 2022 11:52:59:174 282994	0:51 1:51	A:716316048;C:647929778;G:649844718;T:725429229;N:93229	51	51	716316048	647929778	649844718	725429229	93229	ERX9997130	ERS13672455	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Larval	Larval	Brain	Nervous System
11091	11091	ERR10476812	ERX9997155	ERS13672480	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	star:bPAC+/ whole brain pooled 15 brains	star:bPAC+/ whole brain day13	SAMEA111562624	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:star pos d13 1\|collection date:2019 12\|common name:zebrafish\|dev stage:13 dpf\|geographic location country and/or sea:Germany\|sample name:star pos d13 1\|scientific name:Danio rerio\|sex:N/A\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:185 283043	Sample 0256 081 FR NSP TR2 SL1	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_081_FR_NSP_TR2_SL1_S12_L001_R1_001-pooled.fastq.gz 0256_081_FR_NSP_TR2_SL1_S12_L001_R2_001-pooled.fastq.gz	fastq fastq	2976324300.0	29179650.0	ena RUN TAB 09 11 2022 11:52:59:185 283044	0:51 1:51	A:831817738;C:637392987;G:662609648;T:844470228;N:33699	51	51	831817738	637392987	662609648	844470228	33699	ERX9997155	ERS13672480	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Larval	Larval	Brain	Nervous System
11092	11092	ERR10476800	ERX9997143	ERS13672468	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	wildtype whole brain pooled 3 brains	wildtype whole brain day120	SAMEA111562612	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:tu wt d120 4\|collection date:2019 12\|common name:zebrafish\|dev stage:120 dpf\|geographic location country and/or sea:Germany\|sample name:tu wt d120 4\|scientific name:Danio rerio\|sex:female\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:180 283019	Sample 0256 019 FR NSP TR1 SL1	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_019_FR_NSP_TR1_SL1_S30_L001_R1_001-pooled.fastq.gz 0256_019_FR_NSP_TR1_SL1_S30_L001_R2_001-pooled.fastq.gz	fastq fastq	2911008498.0	28539299.0	ena RUN TAB 09 11 2022 11:52:59:180 283020	0:51 1:51	A:795092837;C:651247701;G:672040156;T:792529007;N:98797	51	51	795092837	651247701	672040156	792529007	98797	ERX9997143	ERS13672468	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Adult	Adult	Brain	Nervous System
11093	11093	ERR10476840	ERX9997183	ERS13672508	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	star:bPAC / whole brain pooled 3 brains	star:bPAC / whole brain day120	SAMEA111562652	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:star neg d120 4\|collection date:2019 12\|common name:zebrafish\|dev stage:120 dpf\|geographic location country and/or sea:Germany\|sample name:star neg d120 4\|scientific name:Danio rerio\|sex:female\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:197 283099	Sample 0256 119 FR NSP TR1 SL1	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_119_FR_NSP_TR1_SL1_S48_L001_R1_001-pooled.fastq.gz 0256_119_FR_NSP_TR1_SL1_S48_L001_R2_001-pooled.fastq.gz	fastq fastq	3396382740.0	33297870.0	ena RUN TAB 09 11 2022 11:52:59:197 283100	0:51 1:51	A:937800414;C:753433067;G:760774470;T:944336000;N:38789	51	51	937800414	753433067	760774470	944336000	38789	ERX9997183	ERS13672508	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Adult	Adult	Brain	Nervous System
11094	11094	ERR10476831	ERX9997174	ERS13672499	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	star:bPAC / whole brain pooled 15 brains	star:bPAC / whole brain day6	SAMEA111562643	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:star neg d6 5\|collection date:2019 12\|common name:zebrafish\|dev stage:6 dpf\|geographic location country and/or sea:Germany\|sample name:star neg d6 5\|scientific name:Danio rerio\|sex:N/A\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:193 283081	Sample 0256 105 FR NSP TR1 SL2	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_105_FR_NSP_TR1_SL2_S34_L001_R1_001-pooled.fastq.gz 0256_105_FR_NSP_TR1_SL2_S34_L001_R2_001-pooled.fastq.gz	fastq fastq	3118607160.0	30574580.0	ena RUN TAB 09 11 2022 11:52:59:193 283082	0:51 1:51	A:849321742;C:701271960;G:711995793;T:855982293;N:35372	51	51	849321742	701271960	711995793	855982293	35372	ERX9997174	ERS13672499	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Larval	Larval	Brain	Nervous System
11095	11095	ERR10476793	ERX9997136	ERS13672461	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	wildtype whole brain pooled 15 brains	wildtype whole brain day13	SAMEA111562605	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:tu wt d13 2\|collection date:2019 12\|common name:zebrafish\|dev stage:13 dpf\|geographic location country and/or sea:Germany\|sample name:tu wt d13 2\|scientific name:Danio rerio\|sex:N/A\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:177 283005	Sample 0256 007 FR NSP TR1 SL1	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_007_FR_NSP_TR1_SL1_S19_L001_R1_001-pooled.fastq.gz 0256_007_FR_NSP_TR1_SL1_S19_L001_R2_001-pooled.fastq.gz	fastq fastq	2806322430.0	27512965.0	ena RUN TAB 09 11 2022 11:52:59:177 283006	0:51 1:51	A:715863946;C:680964497;G:693755104;T:715642850;N:96033	51	51	715863946	680964497	693755104	715642850	96033	ERX9997136	ERS13672461	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Larval	Larval	Brain	Nervous System
11096	11096	ERR10476805	ERX9997148	ERS13672473	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	wildtype whole brain pooled 3 brains	wildtype whole brain day120+LD stress	SAMEA111562617	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:tu wt LD 4\|collection date:2019 12\|common name:zebrafish\|dev stage:120 dpf\|geographic location country and/or sea:Germany\|sample name:tu wt LD 4\|scientific name:Danio rerio\|sex:female\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:182 283029	Sample 0256 024 FR NSP TR1 SL1	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_024_FR_NSP_TR1_SL1_S12_L001_R1_001-pooled.fastq.gz 0256_024_FR_NSP_TR1_SL1_S12_L001_R2_001-pooled.fastq.gz	fastq fastq	3257430894.0	31935597.0	ena RUN TAB 09 11 2022 11:52:59:182 283030	0:51 1:51	A:891216584;C:725738391;G:748780264;T:891634510;N:61145	51	51	891216584	725738391	748780264	891634510	61145	ERX9997148	ERS13672473	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Adult	Adult	Brain	Nervous System
11097	11097	ERR10476838	ERX9997181	ERS13672506	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	star:bPAC / whole brain pooled 3 brains	star:bPAC / whole brain day120	SAMEA111562650	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:star neg d120 2\|collection date:2019 12\|common name:zebrafish\|dev stage:120 dpf\|geographic location country and/or sea:Germany\|sample name:star neg d120 2\|scientific name:Danio rerio\|sex:female\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:196 283095	Sample 0256 117 FR NSP TR1 SL1	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_117_FR_NSP_TR1_SL1_S46_L001_R1_001-pooled.fastq.gz 0256_117_FR_NSP_TR1_SL1_S46_L001_R2_001-pooled.fastq.gz	fastq fastq	2232046722.0	21882811.0	ena RUN TAB 09 11 2022 11:52:59:197 283096	0:51 1:51	A:610338276;C:499704184;G:506646198;T:615332999;N:25065	51	51	610338276	499704184	506646198	615332999	25065	ERX9997181	ERS13672506	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Adult	Adult	Brain	Nervous System
11098	11098	ERR10476804	ERX9997147	ERS13672472	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	wildtype whole brain pooled 3 brains	wildtype whole brain day120+LD stress	SAMEA111562616	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:tu wt LD 3\|collection date:2019 12\|common name:zebrafish\|dev stage:120 dpf\|geographic location country and/or sea:Germany\|sample name:tu wt LD 3\|scientific name:Danio rerio\|sex:female\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:182 283027	Sample 0256 023 FR NSP TR1 SL1	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_023_FR_NSP_TR1_SL1_S11_L001_R1_001-pooled.fastq.gz 0256_023_FR_NSP_TR1_SL1_S11_L001_R2_001-pooled.fastq.gz	fastq fastq	3298157352.0	32334876.0	ena RUN TAB 09 11 2022 11:52:59:182 283028	0:51 1:51	A:902806100;C:734844717;G:760378732;T:900065838;N:61965	51	51	902806100	734844717	760378732	900065838	61965	ERX9997147	ERS13672472	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Adult	Adult	Brain	Nervous System
11099	11099	ERR10476803	ERX9997146	ERS13672471	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	wildtype whole brain pooled 3 brains	wildtype whole brain day120+LD stress	SAMEA111562615	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:tu wt LD 2\|collection date:2019 12\|common name:zebrafish\|dev stage:120 dpf\|geographic location country and/or sea:Germany\|sample name:tu wt LD 2\|scientific name:Danio rerio\|sex:female\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:181 283025	Sample 0256 022 FR NSP TR1 SL1	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_022_FR_NSP_TR1_SL1_S10_L001_R1_001-pooled.fastq.gz 0256_022_FR_NSP_TR1_SL1_S10_L001_R2_001-pooled.fastq.gz	fastq fastq	2888740368.0	28320984.0	ena RUN TAB 09 11 2022 11:52:59:182 283026	0:51 1:51	A:785142578;C:649687941;G:672470690;T:781385035;N:54124	51	51	785142578	649687941	672470690	781385035	54124	ERX9997146	ERS13672471	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Adult	Adult	Brain	Nervous System
11100	11100	ERR10476839	ERX9997182	ERS13672507	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	star:bPAC / whole brain pooled 3 brains	star:bPAC / whole brain day120	SAMEA111562651	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:star neg d120 3\|collection date:2019 12\|common name:zebrafish\|dev stage:120 dpf\|geographic location country and/or sea:Germany\|sample name:star neg d120 3\|scientific name:Danio rerio\|sex:female\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:197 283097	Sample 0256 118 FR NSP TR1 SL1	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_118_FR_NSP_TR1_SL1_S47_L001_R1_001-pooled.fastq.gz 0256_118_FR_NSP_TR1_SL1_S47_L001_R2_001-pooled.fastq.gz	fastq fastq	3328515000.0	32632500.0	ena RUN TAB 09 11 2022 11:52:59:197 283098	0:51 1:51	A:918123149;C:737970097;G:747451118;T:924933058;N:37578	51	51	918123149	737970097	747451118	924933058	37578	ERX9997182	ERS13672507	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Adult	Adult	Brain	Nervous System
11101	11101	ERR10476795	ERX9997138	ERS13672463	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	wildtype whole brain pooled 15 brains	wildtype whole brain day13	SAMEA111562607	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:tu wt d13 4\|collection date:2019 12\|common name:zebrafish\|dev stage:13 dpf\|geographic location country and/or sea:Germany\|sample name:tu wt d13 4\|scientific name:Danio rerio\|sex:N/A\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:178 283009	Sample 0256 009 FR NSP TR1 SL1	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_009_FR_NSP_TR1_SL1_S20_L001_R1_001-pooled.fastq.gz 0256_009_FR_NSP_TR1_SL1_S20_L001_R2_001-pooled.fastq.gz	fastq fastq	2524225518.0	24747309.0	ena RUN TAB 09 11 2022 11:52:59:178 283010	0:51 1:51	A:643453173;C:607310608;G:630496995;T:642879275;N:85467	51	51	643453173	607310608	630496995	642879275	85467	ERX9997138	ERS13672463	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Larval	Larval	Brain	Nervous System
11102	11102	ERR10476792	ERX9997135	ERS13672460	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	wildtype whole brain pooled 15 brains	wildtype whole brain day13	SAMEA111562604	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:tu wt d13 1\|collection date:2019 12\|common name:zebrafish\|dev stage:13 dpf\|geographic location country and/or sea:Germany\|sample name:tu wt d13 1\|scientific name:Danio rerio\|sex:N/A\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:177 283003	Sample 0256 006 FR NSP TR1 SL1	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_006_FR_NSP_TR1_SL1_S18_L001_R1_001-pooled.fastq.gz 0256_006_FR_NSP_TR1_SL1_S18_L001_R2_001-pooled.fastq.gz	fastq fastq	2436931062.0	23891481.0	ena RUN TAB 09 11 2022 11:52:59:177 283004	0:51 1:51	A:622664838;C:583373590;G:613974641;T:616835192;N:82801	51	51	622664838	583373590	613974641	616835192	82801	ERX9997135	ERS13672460	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Larval	Larval	Brain	Nervous System
11103	11103	ERR10476822	ERX9997165	ERS13672490	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	star:bPAC+/ whole brain pooled 3 brains	star:bPAC+/ whole brain day120+LD stress	SAMEA111562634	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:star pos LD 1\|collection date:2019 12\|common name:zebrafish\|dev stage:120 dpf\|geographic location country and/or sea:Germany\|sample name:star pos LD 1\|scientific name:Danio rerio\|sex:female\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:189 283063	Sample 0256 096 FR NSP TR1 SL1	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_096_FR_NSP_TR1_SL1_S27_L001_R1_001-pooled.fastq.gz 0256_096_FR_NSP_TR1_SL1_S27_L001_R2_001-pooled.fastq.gz	fastq fastq	2812065336.0	27569268.0	ena RUN TAB 09 11 2022 11:52:59:190 283064	0:51 1:51	A:773228522;C:624515080;G:635774579;T:778515067;N:32088	51	51	773228522	624515080	635774579	778515067	32088	ERX9997165	ERS13672490	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Adult	Adult	Brain	Nervous System
11104	11104	ERR10476834	ERX9997177	ERS13672502	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	star:bPAC / whole brain pooled 15 brains	star:bPAC / whole brain day13	SAMEA111562646	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:star neg d13 3\|collection date:2019 12\|common name:zebrafish\|dev stage:13 dpf\|geographic location country and/or sea:Germany\|sample name:star neg d13 3\|scientific name:Danio rerio\|sex:N/A\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:195 283087	Sample 0256 108 FR NSP TR2 SL1	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_108_FR_NSP_TR2_SL1_S37_L001_R1_001-pooled.fastq.gz 0256_108_FR_NSP_TR2_SL1_S37_L001_R2_001-pooled.fastq.gz	fastq fastq	3252093438.0	31883269.0	ena RUN TAB 09 11 2022 11:52:59:195 283088	0:51 1:51	A:901696576;C:701023909;G:729587564;T:919748293;N:37096	51	51	901696576	701023909	729587564	919748293	37096	ERX9997177	ERS13672502	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Larval	Larval	Brain	Nervous System
11105	11105	ERR10476815	ERX9997158	ERS13672483	ERP138527	PRJEB53713	Time course whole brain transcriptome and methylome profiles of early life high GC exposed zebrafish	f79d57b2-1e93-4ca0-8fda-fd881a2a0c1e	Other	Whole brain transcriptome mRNA profiles of zebrafish which exposed to elavated glucocorticoid GC optogenetically at 6 13 120 dpf dpf and post predatory stress looming dots stress at xxx dpf. All subjective adults at 120 dpf were female. Tubingen strain was used as wildtype control and brains from transgenic line Tgstar:bPAC 2A tdTomatouoe300 +/ and / were sequenced on Illumina NovaSeq6000 by TRON gGmbH Mainz Germany. Paired end TruSeq Stranded mRNA libraries Illumina CA USA were constructed and over 20M of 50 bp reads/sample were sequenced. Oxford Nanopore sequencing was used for DNA methylation identification. These data were generated for the study by Choi et al. 2024. https://www.biorxiv.org/content/10.1101/2023.02.13.528363v4	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	star:bPAC+/ whole brain pooled 15 brains	star:bPAC+/ whole brain day13	SAMEA111562627	Living Systems Institute, University of Exeter	INSDC center name:Living Systems Institute University of Exeter\|Submitter Id:star pos d13 4\|collection date:2019 12\|common name:zebrafish\|dev stage:13 dpf\|geographic location country and/or sea:Germany\|sample name:star pos d13 4\|scientific name:Danio rerio\|sex:N/A\|strain:Tübingen\|tissue type:brain	Illumina NovaSeq 6000 paired end sequencing	ena EXPERIMENT TAB 09 11 2022 11:52:59:186 283049	Sample 0256 084 FR NSP TR2 SL1	1			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		ERP138527	Illumina NovaSeq 6000 paired end sequencing	ENA FIRST PUBLIC:2024 02 06\|ENA LAST UPDATE:2024 02 06	0256_084_FR_NSP_TR2_SL1_S15_L001_R1_001-pooled.fastq.gz 0256_084_FR_NSP_TR2_SL1_S15_L001_R2_001-pooled.fastq.gz	fastq fastq	4118541720.0	40377860.0	ena RUN TAB 09 11 2022 11:52:59:187 283050	0:51 1:51	A:1136484689;C:909656648;G:924700451;T:1147653128;N:46804	51	51	1136484689	909656648	924700451	1147653128	46804	ERX9997158	ERS13672483	ERA18581410	living systems institute, university of exeter\|European Nucleotide Archive	living systems institute, university of exeter\|European Nucleotide Archive												B	B	biological fallback assumption	illumina	novaseq_era	full_length	poly_a	trueseq	bulk	unknown	unknown	United Kingdom	2024-02-06	Larval	Larval	Brain	Nervous System
33360	33360	SRR30140788	SRX25609257	SRS22255959	SRP524310	PRJNA1144219	Danio rerio Raw sequence reads	PRJNA1144219	Whole Genome Sequencing	post exposure to bisphenol S for 50 days zebrafish brain tissue was performed by RNA seq			DMSO 1	DMSO 1		strain:AB\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:not collected\|age:50 days\|dev stage:DMSO 1\|collection date:not collected\|geo loc name:China: Qingdao\|sex:intersex\|tissue:Brain\|BioSampleModel:Model organism or animal	RNA seq of zebrafish Danio rerio	S886	S886	normal RNA seq of Danio rerio			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		SRP524310			DMSO_1_1.fq.gz DMSO_1_2.fq.gz	fastq fastq	6848352600.0	22827842.0	DMSO 1 1.fq.gz	0:150 1:150	A:2042619042;C:1408327078;G:1392721721;T:2004605654;N:79105	150	150	2042619042	1408327078	1392721721	2004605654	79105	SRX25609257	SRS22255959	SRA1940694	Ocean University of China\|College of Marine Life Sciences	Ocean University of China												B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2024-08-06	Juvenile	Juvenile	Brain	Nervous System
33361	33361	SRR30140789	SRX25609256	SRS22255958	SRP524310	PRJNA1144219	Danio rerio Raw sequence reads	PRJNA1144219	Whole Genome Sequencing	post exposure to bisphenol S for 50 days zebrafish brain tissue was performed by RNA seq			DMSO 2	DMSO 2		strain:AB\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:not collected\|age:50 days\|dev stage:DMSO 2\|collection date:not collected\|geo loc name:China: Qingdao\|sex:intersex\|tissue:Brain\|BioSampleModel:Model organism or animal	RNA seq of zebrafish Danio rerio	S887	S887	normal RNA seq of Danio rerio			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		SRP524310			DMSO_2_1.fq.gz DMSO_2_2.fq.gz	fastq fastq	6722867400.0	22409558.0	DMSO 2 1.fq.gz	0:150 1:150	A:1987471480;C:1402576521;G:1384470516;T:1948276779;N:72104	150	150	1987471480	1402576521	1384470516	1948276779	72104	SRX25609256	SRS22255958	SRA1940694	Ocean University of China\|College of Marine Life Sciences	Ocean University of China												B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2024-08-06	Juvenile	Juvenile	Brain	Nervous System
33362	33362	SRR30140790	SRX25609255	SRS22255957	SRP524310	PRJNA1144219	Danio rerio Raw sequence reads	PRJNA1144219	Whole Genome Sequencing	post exposure to bisphenol S for 50 days zebrafish brain tissue was performed by RNA seq			DMSO 3	DMSO 3		strain:AB\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:not collected\|age:50 days\|dev stage:DMSO 3\|collection date:not collected\|geo loc name:China: Qingdao\|sex:intersex\|tissue:Brain\|BioSampleModel:Model organism or animal	RNA seq of zebrafish Danio rerio	S888	S888	normal RNA seq of Danio rerio			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		SRP524310			DMSO_3_1.fq.gz DMSO_3_2.fq.gz	fastq fastq	6385524600.0	21285082.0	DMSO 3 1.fq.gz	0:150 1:150	A:1858080423;C:1360978750;G:1348505877;T:1817909740;N:49810	150	150	1858080423	1360978750	1348505877	1817909740	49810	SRX25609255	SRS22255957	SRA1940694	Ocean University of China\|College of Marine Life Sciences	Ocean University of China												B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2024-08-06	Juvenile	Juvenile	Brain	Nervous System
33363	33363	SRR30140791	SRX25609254	SRS22255956	SRP524310	PRJNA1144219	Danio rerio Raw sequence reads	PRJNA1144219	Whole Genome Sequencing	post exposure to bisphenol S for 50 days zebrafish brain tissue was performed by RNA seq			BPS1 1	BPS1 1		strain:AB\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:not collected\|age:50 days\|dev stage:BPS1 1\|collection date:not collected\|geo loc name:China: Qingdao\|sex:intersex\|tissue:Brain\|BioSampleModel:Model organism or animal	RNA seq of zebrafish Danio rerio	S889	S889	normal RNA seq of Danio rerio			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		SRP524310			BPS1_1_1.fq.gz BPS1_1_2.fq.gz	fastq fastq	6677891400.0	22259638.0	BPS1 1 1.fq.gz	0:150 1:150	A:1942755547;C:1419146767;G:1404962384;T:1910952784;N:73918	150	150	1942755547	1419146767	1404962384	1910952784	73918	SRX25609254	SRS22255956	SRA1940694	Ocean University of China\|College of Marine Life Sciences	Ocean University of China												B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2024-08-06	Juvenile	Juvenile	Brain	Nervous System
33364	33364	SRR30140792	SRX25609253	SRS22255955	SRP524310	PRJNA1144219	Danio rerio Raw sequence reads	PRJNA1144219	Whole Genome Sequencing	post exposure to bisphenol S for 50 days zebrafish brain tissue was performed by RNA seq			BPS1 2	BPS1 2		strain:AB\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:not collected\|age:50 days\|dev stage:BPS1 2\|collection date:not collected\|geo loc name:China: Qingdao\|sex:intersex\|tissue:Brain\|BioSampleModel:Model organism or animal	RNA seq of zebrafish Danio rerio	S890	S890	normal RNA seq of Danio rerio			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		SRP524310			BPS1_2_1.fq.gz BPS1_2_2.fq.gz	fastq fastq	6521417700.0	21738059.0	BPS1 2 1.fq.gz	0:150 1:150	A:1909300221;C:1371099464;G:1358671002;T:1882282904;N:64109	150	150	1909300221	1371099464	1358671002	1882282904	64109	SRX25609253	SRS22255955	SRA1940694	Ocean University of China\|College of Marine Life Sciences	Ocean University of China												B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2024-08-06	Juvenile	Juvenile	Brain	Nervous System
33365	33365	SRR30140793	SRX25609252	SRS22255954	SRP524310	PRJNA1144219	Danio rerio Raw sequence reads	PRJNA1144219	Whole Genome Sequencing	post exposure to bisphenol S for 50 days zebrafish brain tissue was performed by RNA seq			BPS1 3	BPS1 3		strain:AB\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:not collected\|age:50 days\|dev stage:BPS1 3\|collection date:not collected\|geo loc name:China: Qingdao\|sex:intersex\|tissue:Brain\|BioSampleModel:Model organism or animal	RNA seq of zebrafish Danio rerio	S891	S891	normal RNA seq of Danio rerio			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		SRP524310			BPS1_3_1.fq.gz BPS1_3_2.fq.gz	fastq fastq	6821300100.0	22737667.0	BPS1 3 1.fq.gz	0:150 1:150	A:1996014045;C:1437758871;G:1429644156;T:1957815359;N:67669	150	150	1996014045	1437758871	1429644156	1957815359	67669	SRX25609252	SRS22255954	SRA1940694	Ocean University of China\|College of Marine Life Sciences	Ocean University of China												B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2024-08-06	Juvenile	Juvenile	Brain	Nervous System
33366	33366	SRR30140794	SRX25609251	SRS22255953	SRP524310	PRJNA1144219	Danio rerio Raw sequence reads	PRJNA1144219	Whole Genome Sequencing	post exposure to bisphenol S for 50 days zebrafish brain tissue was performed by RNA seq			BPS100 1	BPS100 1		strain:AB\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:not collected\|age:50 days\|dev stage:BPS100 1\|collection date:not collected\|geo loc name:China: Qingdao\|sex:intersex\|tissue:Brain\|BioSampleModel:Model organism or animal	RNA seq of zebrafish Danio rerio	S892	S892	normal RNA seq of Danio rerio			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		SRP524310			BPS100_1_1.fq.gz BPS100_1_2.fq.gz	fastq fastq	6420793800.0	21402646.0	BPS100 1 1.fq.gz	0:150 1:150	A:1856129124;C:1374411655;G:1366071243;T:1824132054;N:49724	150	150	1856129124	1374411655	1366071243	1824132054	49724	SRX25609251	SRS22255953	SRA1940694	Ocean University of China\|College of Marine Life Sciences	Ocean University of China												B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2024-08-06	Juvenile	Juvenile	Brain	Nervous System
33367	33367	SRR30140795	SRX25609250	SRS22255952	SRP524310	PRJNA1144219	Danio rerio Raw sequence reads	PRJNA1144219	Whole Genome Sequencing	post exposure to bisphenol S for 50 days zebrafish brain tissue was performed by RNA seq			BPS100 2	BPS100 2		strain:AB\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:not collected\|age:50 days\|dev stage:BPS100 2\|collection date:not collected\|geo loc name:China: Qingdao\|sex:intersex\|tissue:Brain\|BioSampleModel:Model organism or animal	RNA seq of zebrafish Danio rerio	S893	S893	normal RNA seq of Danio rerio			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		SRP524310			BPS100_2_1.fq.gz BPS100_2_2.fq.gz	fastq fastq	6639336600.0	22131122.0	BPS100 2 1.fq.gz	0:150 1:150	A:1901484110;C:1438361866;G:1430361119;T:1869078551;N:50954	150	150	1901484110	1438361866	1430361119	1869078551	50954	SRX25609250	SRS22255952	SRA1940694	Ocean University of China\|College of Marine Life Sciences	Ocean University of China												B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2024-08-06	Juvenile	Juvenile	Brain	Nervous System
33368	33368	SRR30140796	SRX25609249	SRS22255951	SRP524310	PRJNA1144219	Danio rerio Raw sequence reads	PRJNA1144219	Whole Genome Sequencing	post exposure to bisphenol S for 50 days zebrafish brain tissue was performed by RNA seq			BPS100 3	BPS100 3		strain:AB\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:not collected\|age:50 days\|dev stage:BPS100 3\|collection date:not collected\|geo loc name:China: Qingdao\|sex:intersex\|tissue:Brain\|BioSampleModel:Model organism or animal	RNA seq of zebrafish Danio rerio	S894	S894	normal RNA seq of Danio rerio			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		SRP524310			BPS100_3_1.fq.gz BPS100_3_2.fq.gz	fastq fastq	6586231800.0	21954106.0	BPS100 3 1.fq.gz	0:150 1:150	A:1875041634;C:1438699475;G:1425868891;T:1846570793;N:51007	150	150	1875041634	1438699475	1425868891	1846570793	51007	SRX25609249	SRS22255951	SRA1940694	Ocean University of China\|College of Marine Life Sciences	Ocean University of China												B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2024-08-06	Juvenile	Juvenile	Brain	Nervous System
57271	57271	SRR12577970	SRX9064853	SRS7314026	SRP279881	PRJNA612371	Danio rerio strain:TU Raw sequence reads	PRJNA612371	Whole Genome Sequencing	Hemorrhage stroke is a severe vascular disease of the brain with a high mortality rate in humans. Sodium tanshinone IIA sulfonate STS is a water soluble derivative of tanshinone IIA which is the main active ingredient of Salvia miltiorrhiza Bge known as Danshen in Chinese and has been approved as a commercial drug for treating cardiovascular disease by the China Food and Drug Administration. In our previous study we established a HMG COA inhibitor atorvastatin Ator induced zebrafish model of cerebral hemorrhage and found that STS dramatically decreased both the hemorrhage rate and hemorrhage area although the underlying mechanism was not fully elucidated. Therefore in the present study we conducted transcriptome analysis of the protective effect of STS against Ator induced cerebral hemorrhage in zebrafish using RNA Seq technology and further clarify its underlying molecular mechanisms on HIF 1 and its regulators i.e. the PI3K/Akt and MAPK signaling pathways were verified by real time PCR analysis and specific pharmacological inhibitors. We are also able to show that hemoglobin carbonic anhydrase Na+/H+ exchanger and HIF 1 genes might be potential biomarkers of Ator induced cerebral hemorrhage in zebrafish as well as pharmacological targets of STS. This study also provided evidence of bio markers involved in hemorrhage stroke and improved understanding of the effects of HMG COA inhibition on vascular permeability and cerebral hemorrhage.				Ctrl 3 zebrafish		strain:TU\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:not collected\|age:2dpf\|dev stage:not collected\|sex:not applicable\|tissue:head\|geo loc name:China:Shanghai\|sample type:model organism\|replicate:replicate=biological replicate 6'\|BioSampleModel:Model organism or animal	Ctrl 3 zebrafish	Ctrl 3 zebrafish	Ctrl 3 zebrafish	transcriptome			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	BGISEQ	BGISEQ-500		SRP279881			Ctrl_3_1.fq.gz	fastq	1061227250.0	21224545.0	Ctrl 3 1.fq.gz	0:50	A:286099732;C:241244619;G:246876865;T:287006034;N:0	50		286099732	241244619	246876865	287006034	0	SRX9064853	SRS7314026	SRA1120721	Shanghai University of Traditional Chinese Medicine\|Longhua Hospital	Shanghai University of Traditional Chinese Medicine	1	0.94563		0.10453		0.70552		0.46655		50		B		usable mapping rate	bgi	bgi	unknown	poly_a	unknown	bulk	unknown	unknown	China	2020-09-03	Hatching	Embryo	Head	Nervous System
57272	57272	SRR12577971	SRX9064852	SRS7314025	SRP279881	PRJNA612371	Danio rerio strain:TU Raw sequence reads	PRJNA612371	Whole Genome Sequencing	Hemorrhage stroke is a severe vascular disease of the brain with a high mortality rate in humans. Sodium tanshinone IIA sulfonate STS is a water soluble derivative of tanshinone IIA which is the main active ingredient of Salvia miltiorrhiza Bge known as Danshen in Chinese and has been approved as a commercial drug for treating cardiovascular disease by the China Food and Drug Administration. In our previous study we established a HMG COA inhibitor atorvastatin Ator induced zebrafish model of cerebral hemorrhage and found that STS dramatically decreased both the hemorrhage rate and hemorrhage area although the underlying mechanism was not fully elucidated. Therefore in the present study we conducted transcriptome analysis of the protective effect of STS against Ator induced cerebral hemorrhage in zebrafish using RNA Seq technology and further clarify its underlying molecular mechanisms on HIF 1 and its regulators i.e. the PI3K/Akt and MAPK signaling pathways were verified by real time PCR analysis and specific pharmacological inhibitors. We are also able to show that hemoglobin carbonic anhydrase Na+/H+ exchanger and HIF 1 genes might be potential biomarkers of Ator induced cerebral hemorrhage in zebrafish as well as pharmacological targets of STS. This study also provided evidence of bio markers involved in hemorrhage stroke and improved understanding of the effects of HMG COA inhibition on vascular permeability and cerebral hemorrhage.				Ctrl 2 zebrafish		strain:TU\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:not collected\|age:2dpf\|dev stage:not collected\|sex:not applicable\|tissue:head\|geo loc name:China:Shanghai\|sample type:model organism\|replicate:replicate=biological replicate 5 prime\|BioSampleModel:Model organism or animal	Ctrl 2 zebrafish	Ctrl 2 zebrafish	Ctrl 2 zebrafish	transcriptome			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	BGISEQ	BGISEQ-500		SRP279881			Ctrl_2_1.fq.gz	fastq	1058116700.0	21162334.0	Ctrl 2 1.fq.gz	0:50	A:287223905;C:238707750;G:244987559;T:287197486;N:0	50		287223905	238707750	244987559	287197486	0	SRX9064852	SRS7314025	SRA1120721	Shanghai University of Traditional Chinese Medicine\|Longhua Hospital	Shanghai University of Traditional Chinese Medicine	1	0.94534		0.11174		0.70104		0.47946		50		B		usable mapping rate	bgi	bgi	unknown	poly_a	unknown	bulk	unknown	unknown	China	2020-09-03	Hatching	Embryo	Head	Nervous System
57273	57273	SRR12577972	SRX9064851	SRS7314024	SRP279881	PRJNA612371	Danio rerio strain:TU Raw sequence reads	PRJNA612371	Whole Genome Sequencing	Hemorrhage stroke is a severe vascular disease of the brain with a high mortality rate in humans. Sodium tanshinone IIA sulfonate STS is a water soluble derivative of tanshinone IIA which is the main active ingredient of Salvia miltiorrhiza Bge known as Danshen in Chinese and has been approved as a commercial drug for treating cardiovascular disease by the China Food and Drug Administration. In our previous study we established a HMG COA inhibitor atorvastatin Ator induced zebrafish model of cerebral hemorrhage and found that STS dramatically decreased both the hemorrhage rate and hemorrhage area although the underlying mechanism was not fully elucidated. Therefore in the present study we conducted transcriptome analysis of the protective effect of STS against Ator induced cerebral hemorrhage in zebrafish using RNA Seq technology and further clarify its underlying molecular mechanisms on HIF 1 and its regulators i.e. the PI3K/Akt and MAPK signaling pathways were verified by real time PCR analysis and specific pharmacological inhibitors. We are also able to show that hemoglobin carbonic anhydrase Na+/H+ exchanger and HIF 1 genes might be potential biomarkers of Ator induced cerebral hemorrhage in zebrafish as well as pharmacological targets of STS. This study also provided evidence of bio markers involved in hemorrhage stroke and improved understanding of the effects of HMG COA inhibition on vascular permeability and cerebral hemorrhage.				Ctrl 1 zebrafish		strain:TU\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:not collected\|age:2dpf\|dev stage:not collected\|sex:not applicable\|tissue:head\|geo loc name:China:Shanghai\|sample type:model organism\|replicate:replicate=biological replicate 4'\|BioSampleModel:Model organism or animal	Ctrl 1 zebrafish	Ctrl 1 zebrafish	Ctrl 1 zebrafish	transcriptome			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	BGISEQ	BGISEQ-500		SRP279881			Ctrl_1_1.fq.gz	fastq	1065919600.0	21318392.0	Ctrl 1 1.fq.gz	0:50	A:295920720;C:242146677;G:242962633;T:284889570;N:0	50		295920720	242146677	242962633	284889570	0	SRX9064851	SRS7314024	SRA1120721	Shanghai University of Traditional Chinese Medicine\|Longhua Hospital	Shanghai University of Traditional Chinese Medicine	1	0.94228		0.15007		0.68028		0.46845		50		B		usable mapping rate	bgi	bgi	unknown	poly_a	unknown	bulk	unknown	unknown	China	2020-09-03	Hatching	Embryo	Head	Nervous System
57274	57274	SRR12577973	SRX9064850	SRS7314023	SRP279881	PRJNA612371	Danio rerio strain:TU Raw sequence reads	PRJNA612371	Whole Genome Sequencing	Hemorrhage stroke is a severe vascular disease of the brain with a high mortality rate in humans. Sodium tanshinone IIA sulfonate STS is a water soluble derivative of tanshinone IIA which is the main active ingredient of Salvia miltiorrhiza Bge known as Danshen in Chinese and has been approved as a commercial drug for treating cardiovascular disease by the China Food and Drug Administration. In our previous study we established a HMG COA inhibitor atorvastatin Ator induced zebrafish model of cerebral hemorrhage and found that STS dramatically decreased both the hemorrhage rate and hemorrhage area although the underlying mechanism was not fully elucidated. Therefore in the present study we conducted transcriptome analysis of the protective effect of STS against Ator induced cerebral hemorrhage in zebrafish using RNA Seq technology and further clarify its underlying molecular mechanisms on HIF 1 and its regulators i.e. the PI3K/Akt and MAPK signaling pathways were verified by real time PCR analysis and specific pharmacological inhibitors. We are also able to show that hemoglobin carbonic anhydrase Na+/H+ exchanger and HIF 1 genes might be potential biomarkers of Ator induced cerebral hemorrhage in zebrafish as well as pharmacological targets of STS. This study also provided evidence of bio markers involved in hemorrhage stroke and improved understanding of the effects of HMG COA inhibition on vascular permeability and cerebral hemorrhage.				Ator STS 3 zebrafish		strain:TU\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:not collected\|age:2dpf\|dev stage:not collected\|sex:not applicable\|tissue:head\|geo loc name:China:Shanghai\|sample type:model organism\|replicate:replicate=biological replicate 3 prime\|BioSampleModel:Model organism or animal	Ator STS 3 zebrafish	Ator STS 3 zebrafish	Ator STS 3 zebrafish	transcriptome			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	BGISEQ	BGISEQ-500		SRP279881			Ator_STS_3_1.fq.gz	fastq	1059717350.0	21194347.0	Ator STS 3 1.fq.gz	0:50	A:287279590;C:239708340;G:245740313;T:286989107;N:0	50		287279590	239708340	245740313	286989107	0	SRX9064850	SRS7314023	SRA1120721	Shanghai University of Traditional Chinese Medicine\|Longhua Hospital	Shanghai University of Traditional Chinese Medicine	1	0.94345		0.10458		0.69686		0.4755		50		B		usable mapping rate	bgi	bgi	unknown	poly_a	unknown	bulk	unknown	unknown	China	2020-09-03	Hatching	Embryo	Head	Nervous System
57275	57275	SRR12577974	SRX9064849	SRS7314022	SRP279881	PRJNA612371	Danio rerio strain:TU Raw sequence reads	PRJNA612371	Whole Genome Sequencing	Hemorrhage stroke is a severe vascular disease of the brain with a high mortality rate in humans. Sodium tanshinone IIA sulfonate STS is a water soluble derivative of tanshinone IIA which is the main active ingredient of Salvia miltiorrhiza Bge known as Danshen in Chinese and has been approved as a commercial drug for treating cardiovascular disease by the China Food and Drug Administration. In our previous study we established a HMG COA inhibitor atorvastatin Ator induced zebrafish model of cerebral hemorrhage and found that STS dramatically decreased both the hemorrhage rate and hemorrhage area although the underlying mechanism was not fully elucidated. Therefore in the present study we conducted transcriptome analysis of the protective effect of STS against Ator induced cerebral hemorrhage in zebrafish using RNA Seq technology and further clarify its underlying molecular mechanisms on HIF 1 and its regulators i.e. the PI3K/Akt and MAPK signaling pathways were verified by real time PCR analysis and specific pharmacological inhibitors. We are also able to show that hemoglobin carbonic anhydrase Na+/H+ exchanger and HIF 1 genes might be potential biomarkers of Ator induced cerebral hemorrhage in zebrafish as well as pharmacological targets of STS. This study also provided evidence of bio markers involved in hemorrhage stroke and improved understanding of the effects of HMG COA inhibition on vascular permeability and cerebral hemorrhage.				Ator STS 2 zebrafish		strain:TU\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:not collected\|age:2dpf\|dev stage:not collected\|sex:not applicable\|tissue:head\|geo loc name:China:Shanghai\|sample type:model organism\|replicate:replicate=biological replicate 2'\|BioSampleModel:Model organism or animal	Ator STS 2 zebrafish	Ator STS 2 zebrafish	Ator STS 2 zebrafish	transcriptome			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	BGISEQ	BGISEQ-500		SRP279881			Ator_STS_2_1.fq.gz	fastq	1057950250.0	21159005.0	Ator STS 2 1.fq.gz	0:50	A:286256354;C:238832868;G:244078781;T:288782247;N:0	50		286256354	238832868	244078781	288782247	0	SRX9064849	SRS7314022	SRA1120721	Shanghai University of Traditional Chinese Medicine\|Longhua Hospital	Shanghai University of Traditional Chinese Medicine	1	0.94307		0.10974		0.69631		0.4703		50		B		usable mapping rate	bgi	bgi	unknown	poly_a	unknown	bulk	unknown	unknown	China	2020-09-03	Hatching	Embryo	Head	Nervous System
57276	57276	SRR12577975	SRX9064848	SRS7314021	SRP279881	PRJNA612371	Danio rerio strain:TU Raw sequence reads	PRJNA612371	Whole Genome Sequencing	Hemorrhage stroke is a severe vascular disease of the brain with a high mortality rate in humans. Sodium tanshinone IIA sulfonate STS is a water soluble derivative of tanshinone IIA which is the main active ingredient of Salvia miltiorrhiza Bge known as Danshen in Chinese and has been approved as a commercial drug for treating cardiovascular disease by the China Food and Drug Administration. In our previous study we established a HMG COA inhibitor atorvastatin Ator induced zebrafish model of cerebral hemorrhage and found that STS dramatically decreased both the hemorrhage rate and hemorrhage area although the underlying mechanism was not fully elucidated. Therefore in the present study we conducted transcriptome analysis of the protective effect of STS against Ator induced cerebral hemorrhage in zebrafish using RNA Seq technology and further clarify its underlying molecular mechanisms on HIF 1 and its regulators i.e. the PI3K/Akt and MAPK signaling pathways were verified by real time PCR analysis and specific pharmacological inhibitors. We are also able to show that hemoglobin carbonic anhydrase Na+/H+ exchanger and HIF 1 genes might be potential biomarkers of Ator induced cerebral hemorrhage in zebrafish as well as pharmacological targets of STS. This study also provided evidence of bio markers involved in hemorrhage stroke and improved understanding of the effects of HMG COA inhibition on vascular permeability and cerebral hemorrhage.				Ator STS 1 zebrafish		strain:TU\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:not collected\|age:2dpf\|dev stage:not collected\|sex:not applicable\|tissue:head\|geo loc name:China:Shanghai\|sample type:model organism\|replicate:replicate=biological replicate 1'\|BioSampleModel:Model organism or animal	Ator STS 1 zebrafish	Ator STS 1 zebrafish	Ator STS 1 zebrafish	transcriptome			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	BGISEQ	BGISEQ-500		SRP279881			Ator_STS_1_1.fq.gz	fastq	1070136700.0	21402734.0	Ator STS 1 1.fq.gz	0:50	A:297601042;C:243837062;G:243583907;T:285114689;N:0	50		297601042	243837062	243583907	285114689	0	SRX9064848	SRS7314021	SRA1120721	Shanghai University of Traditional Chinese Medicine\|Longhua Hospital	Shanghai University of Traditional Chinese Medicine	1	0.94665		0.12219		0.67953		0.46393		50		B		usable mapping rate	bgi	bgi	unknown	poly_a	unknown	bulk	unknown	unknown	China	2020-09-03	Hatching	Embryo	Head	Nervous System
57277	57277	SRR12577976	SRX9064847	SRS7314020	SRP279881	PRJNA612371	Danio rerio strain:TU Raw sequence reads	PRJNA612371	Whole Genome Sequencing	Hemorrhage stroke is a severe vascular disease of the brain with a high mortality rate in humans. Sodium tanshinone IIA sulfonate STS is a water soluble derivative of tanshinone IIA which is the main active ingredient of Salvia miltiorrhiza Bge known as Danshen in Chinese and has been approved as a commercial drug for treating cardiovascular disease by the China Food and Drug Administration. In our previous study we established a HMG COA inhibitor atorvastatin Ator induced zebrafish model of cerebral hemorrhage and found that STS dramatically decreased both the hemorrhage rate and hemorrhage area although the underlying mechanism was not fully elucidated. Therefore in the present study we conducted transcriptome analysis of the protective effect of STS against Ator induced cerebral hemorrhage in zebrafish using RNA Seq technology and further clarify its underlying molecular mechanisms on HIF 1 and its regulators i.e. the PI3K/Akt and MAPK signaling pathways were verified by real time PCR analysis and specific pharmacological inhibitors. We are also able to show that hemoglobin carbonic anhydrase Na+/H+ exchanger and HIF 1 genes might be potential biomarkers of Ator induced cerebral hemorrhage in zebrafish as well as pharmacological targets of STS. This study also provided evidence of bio markers involved in hemorrhage stroke and improved understanding of the effects of HMG COA inhibition on vascular permeability and cerebral hemorrhage.				Ator 3 zebrafish		strain:TU\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:not collected\|age:2dpf\|dev stage:not collected\|sex:not applicable\|tissue:head\|geo loc name:China:Shanghai\|sample type:model organism\|replicate:replicate=biological replicate 3 prime\|BioSampleModel:Model organism or animal	Ator 3 zebrafish	Ator 3 zebrafish	Ator 3 zebrafish	transcriptome			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	BGISEQ	BGISEQ-500		SRP279881			Ator_3_1.fq.gz	fastq	1058031900.0	21160638.0	Ator 3 1.fq.gz	0:50	A:285399527;C:239993172;G:245571467;T:287067734;N:0	50		285399527	239993172	245571467	287067734	0	SRX9064847	SRS7314020	SRA1120721	Shanghai University of Traditional Chinese Medicine\|Longhua Hospital	Shanghai University of Traditional Chinese Medicine	1	0.94536		0.11052		0.6957		0.48195		50		B		usable mapping rate	bgi	bgi	unknown	poly_a	unknown	bulk	unknown	unknown	China	2020-09-03	Hatching	Embryo	Head	Nervous System
57278	57278	SRR12577977	SRX9064846	SRS7314019	SRP279881	PRJNA612371	Danio rerio strain:TU Raw sequence reads	PRJNA612371	Whole Genome Sequencing	Hemorrhage stroke is a severe vascular disease of the brain with a high mortality rate in humans. Sodium tanshinone IIA sulfonate STS is a water soluble derivative of tanshinone IIA which is the main active ingredient of Salvia miltiorrhiza Bge known as Danshen in Chinese and has been approved as a commercial drug for treating cardiovascular disease by the China Food and Drug Administration. In our previous study we established a HMG COA inhibitor atorvastatin Ator induced zebrafish model of cerebral hemorrhage and found that STS dramatically decreased both the hemorrhage rate and hemorrhage area although the underlying mechanism was not fully elucidated. Therefore in the present study we conducted transcriptome analysis of the protective effect of STS against Ator induced cerebral hemorrhage in zebrafish using RNA Seq technology and further clarify its underlying molecular mechanisms on HIF 1 and its regulators i.e. the PI3K/Akt and MAPK signaling pathways were verified by real time PCR analysis and specific pharmacological inhibitors. We are also able to show that hemoglobin carbonic anhydrase Na+/H+ exchanger and HIF 1 genes might be potential biomarkers of Ator induced cerebral hemorrhage in zebrafish as well as pharmacological targets of STS. This study also provided evidence of bio markers involved in hemorrhage stroke and improved understanding of the effects of HMG COA inhibition on vascular permeability and cerebral hemorrhage.				Ator 2 zebrafish		strain:TU\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:not collected\|age:2dpf\|dev stage:not collected\|sex:not applicable\|tissue:head\|geo loc name:China:Shanghai\|sample type:model organism\|replicate:replicate=biological replicate 2'\|BioSampleModel:Model organism or animal	Ator 2 zebrafish	Ator 2 zebrafish	Ator 2 zebrafish	transcriptome			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	BGISEQ	BGISEQ-500		SRP279881			Ator_2_1.fq.gz	fastq	1059618400.0	21192368.0	Ator 2 1.fq.gz	0:50	A:283429136;C:243023053;G:248904818;T:284261393;N:0	50		283429136	243023053	248904818	284261393	0	SRX9064846	SRS7314019	SRA1120721	Shanghai University of Traditional Chinese Medicine\|Longhua Hospital	Shanghai University of Traditional Chinese Medicine	1	0.94743		0.09493		0.70218		0.475		50		B		usable mapping rate	bgi	bgi	unknown	poly_a	unknown	bulk	unknown	unknown	China	2020-09-03	Hatching	Embryo	Head	Nervous System
57279	57279	SRR12577978	SRX9064845	SRS7314018	SRP279881	PRJNA612371	Danio rerio strain:TU Raw sequence reads	PRJNA612371	Whole Genome Sequencing	Hemorrhage stroke is a severe vascular disease of the brain with a high mortality rate in humans. Sodium tanshinone IIA sulfonate STS is a water soluble derivative of tanshinone IIA which is the main active ingredient of Salvia miltiorrhiza Bge known as Danshen in Chinese and has been approved as a commercial drug for treating cardiovascular disease by the China Food and Drug Administration. In our previous study we established a HMG COA inhibitor atorvastatin Ator induced zebrafish model of cerebral hemorrhage and found that STS dramatically decreased both the hemorrhage rate and hemorrhage area although the underlying mechanism was not fully elucidated. Therefore in the present study we conducted transcriptome analysis of the protective effect of STS against Ator induced cerebral hemorrhage in zebrafish using RNA Seq technology and further clarify its underlying molecular mechanisms on HIF 1 and its regulators i.e. the PI3K/Akt and MAPK signaling pathways were verified by real time PCR analysis and specific pharmacological inhibitors. We are also able to show that hemoglobin carbonic anhydrase Na+/H+ exchanger and HIF 1 genes might be potential biomarkers of Ator induced cerebral hemorrhage in zebrafish as well as pharmacological targets of STS. This study also provided evidence of bio markers involved in hemorrhage stroke and improved understanding of the effects of HMG COA inhibition on vascular permeability and cerebral hemorrhage.				Ator 1 zebrafish		strain:TU\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:not collected\|age:2dpf\|dev stage:not collected\|sex:not applicable\|tissue:head\|geo loc name:China:Shanghai\|sample type:model organism\|replicate:replicate=biological replicate 1'\|BioSampleModel:Model organism or animal	Ator 1 zebrafish	Ator 1 zebrafish	Ator 1 zebrafish	transcriptome			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	BGISEQ	BGISEQ-500		SRP279881			Ator_1_1.fq.gz	fastq	1075695950.0	21513919.0	Ator 1 1.fq.gz	0:50	A:297768036;C:244470267;G:243768925;T:289688722;N:0	50		297768036	244470267	243768925	289688722	0	SRX9064845	SRS7314018	SRA1120721	Shanghai University of Traditional Chinese Medicine\|Longhua Hospital	Shanghai University of Traditional Chinese Medicine	1	0.94468		0.13183		0.68363		0.46288		50		B		usable mapping rate	bgi	bgi	unknown	poly_a	unknown	bulk	unknown	unknown	China	2020-09-03	Hatching	Embryo	Head	Nervous System
61710	61710	SRR13015568	SRX9466668	SRS7678791	SRP291905	PRJNA674002	A to I RNA editing in zebrafish during development	PRJNA674002	Other	Here we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw unmapped sequencing output from stranded mRNA libraries can be found under this accession.			cerebellum male replicate 1	cerebellum male.rep1		strain:AB wildtype\|dev stage:adult\|sex:male\|tissue:cerebellum\|biological replicate:replicate 1\|assay type:mRNA seq\|BioSampleModel:Model organism or animal	mRNA Seq of zebrafish brain: adult male cerebellum Rep1	1m5	1m5	stranded mRNA			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 2500		SRP291905			1m5_S12_L006_R1_001.fastq.gz 1m5_S12_L006_R2_001.fastq.gz	fastq fastq	14610343968.0	96120684.0	1m5 S12 L006 R1 001.fastq.gz	0:76 1:76	A:3719027794;C:3589619335;G:3514384852;T:3784663256;N:2648731	76	76	3719027794	3589619335	3514384852	3784663256	2648731	SRX9466668	SRS7678791	SRA1153075	MDC Berlin\|BIMSB	MDC Berlin	2	0.90214	0.89941	0.44035	0.43795	0.78139	0.78634	0.62348	0.61644	76	76	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-11-10	Adult	Adult	Brain	Nervous System
61711	61711	SRR13015569	SRX9466667	SRS7678744	SRP291905	PRJNA674002	A to I RNA editing in zebrafish during development	PRJNA674002	Other	Here we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw unmapped sequencing output from stranded mRNA libraries can be found under this accession.			whole brain parents from cross 1	male cross 1 adult brain		strain:AB wildtype\|dev stage:adult\|sex:male\|tissue:whole brain\|embryos derived by cross:single cross 1\|assay type:mRNA seq\|BioSampleModel:Model organism or animal	mRNA seq whole brain zebrafish male from single cross 1 lane1	PJ KH 030 1	PJ KH 030 1	stranded mRNA			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 2500		SRP291905			PJ_KH_030_S30_L003_R1_001.fastq.gz PJ_KH_030_S30_L003_R2_001.fastq.gz	fastq fastq	6429727376.0	21290488.0	PJ KH 030 S30 L003 R1 001.fastq.gz	0:151 1:151	A:1684299085;C:1528812483;G:1589785859;T:1625953978;N:875971	151	151	1684299085	1528812483	1589785859	1625953978	875971	SRX9466667	SRS7678744	SRA1153075	MDC Berlin\|BIMSB	MDC Berlin	2	0.9239	0.92493	0.09222	0.08938	0.68361	0.6854	0.49782	0.50548	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-11-10	Adult	Adult	Brain	Nervous System
61712	61712	SRR13015570	SRX9466666	SRS7678790	SRP291905	PRJNA674002	A to I RNA editing in zebrafish during development	PRJNA674002	Other	Here we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw unmapped sequencing output from stranded mRNA libraries can be found under this accession.			whole brain parents from cross 1	female cross 1 adult brain		strain:AB wildtype\|dev stage:adult\|sex:female\|tissue:whole brain\|embryos derived by cross:single cross 1\|assay type:mRNA seq\|BioSampleModel:Model organism or animal	mRNA seq whole brain zebrafish female from single cross 1 lane2	PJ KH 029 2	PJ KH 029 2	stranded mRNA			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 2500		SRP291905			PJ_KH_029_S29_L004_R1_001.fastq.gz PJ_KH_029_S29_L004_R2_001.fastq.gz	fastq fastq	7450130412.0	24669306.0	PJ KH 029 S29 L004 R1 001.fastq.gz	0:151 1:151	A:1969709863;C:1756017543;G:1788139547;T:1934886199;N:1377260	151	151	1969709863	1756017543	1788139547	1934886199	1377260	SRX9466666	SRS7678790	SRA1153075	MDC Berlin\|BIMSB	MDC Berlin	2	0.94617	0.94782	0.10955	0.10649	0.69532	0.69948	0.49163	0.50315	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-11-10	Adult	Adult	Brain	Nervous System
61713	61713	SRR13015571	SRX9466665	SRS7678790	SRP291905	PRJNA674002	A to I RNA editing in zebrafish during development	PRJNA674002	Other	Here we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw unmapped sequencing output from stranded mRNA libraries can be found under this accession.			whole brain parents from cross 1	female cross 1 adult brain		strain:AB wildtype\|dev stage:adult\|sex:female\|tissue:whole brain\|embryos derived by cross:single cross 1\|assay type:mRNA seq\|BioSampleModel:Model organism or animal	mRNA seq whole brain zebrafish female from single cross 1 lane1	PJ KH 029 1	PJ KH 029 1	stranded mRNA			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 2500		SRP291905			PJ_KH_029_S29_L003_R1_001.fastq.gz PJ_KH_029_S29_L003_R2_001.fastq.gz	fastq fastq	7353222236.0	24348418.0	PJ KH 029 S29 L003 R1 001.fastq.gz	0:151 1:151	A:1944005714;C:1733426581;G:1767411436;T:1907377753;N:1000752	151	151	1944005714	1733426581	1767411436	1907377753	1000752	SRX9466665	SRS7678790	SRA1153075	MDC Berlin\|BIMSB	MDC Berlin	2	0.94563	0.94753	0.10885	0.10579	0.69489	0.70094	0.491	0.49985	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-11-10	Adult	Adult	Brain	Nervous System
61716	61716	SRR13015574	SRX9466662	SRS7678788	SRP291905	PRJNA674002	A to I RNA editing in zebrafish during development	PRJNA674002	Other	Here we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw unmapped sequencing output from stranded mRNA libraries can be found under this accession.			zebrafish embryos 72hpf head	single cross 2 72hpf head.rep2		strain:AB wildtype\|dev stage:72 hpf\|sex:unknown\|tissue:head\|embryos derived by cross:single cross 2\|biological replicate:replicate 2\|assay type:mRNA seq\|BioSampleModel:Model organism or animal	mRNA seq of whole zebrafish embryos wildtype AB 72 hpf head single cross 2 Rep2 lane2	PJ KH 025 2	PJ KH 025 2	stranded mRNA			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 2500		SRP291905			PJ_KH_025_S25_L004_R1_001.fastq.gz PJ_KH_025_S25_L004_R2_001.fastq.gz	fastq fastq	6044277226.0	20014163.0	PJ KH 025 S25 L004 R1 001.fastq.gz	0:151 1:151	A:1592897775;C:1431102291;G:1483194415;T:1535949729;N:1133016	151	151	1592897775	1431102291	1483194415	1535949729	1133016	SRX9466662	SRS7678788	SRA1153075	MDC Berlin\|BIMSB	MDC Berlin	2	0.83797	0.8376	0.08415	0.08231	0.67734	0.67984	0.47005	0.47051	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-11-10	Larval	Larval	Head	Nervous System
61717	61717	SRR13015575	SRX9466661	SRS7678788	SRP291905	PRJNA674002	A to I RNA editing in zebrafish during development	PRJNA674002	Other	Here we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw unmapped sequencing output from stranded mRNA libraries can be found under this accession.			zebrafish embryos 72hpf head	single cross 2 72hpf head.rep2		strain:AB wildtype\|dev stage:72 hpf\|sex:unknown\|tissue:head\|embryos derived by cross:single cross 2\|biological replicate:replicate 2\|assay type:mRNA seq\|BioSampleModel:Model organism or animal	mRNA seq of whole zebrafish embryos wildtype AB 72 hpf head single cross 2 Rep2 lane1	PJ KH 025 1	PJ KH 025 1	stranded mRNA			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 2500		SRP291905			PJ_KH_025_S25_L003_R1_001.fastq.gz PJ_KH_025_S25_L003_R2_001.fastq.gz	fastq fastq	5975225530.0	19785515.0	PJ KH 025 S25 L003 R1 001.fastq.gz	0:151 1:151	A:1575693310;C:1413843218;G:1467480556;T:1517391851;N:816595	151	151	1575693310	1413843218	1467480556	1517391851	816595	SRX9466661	SRS7678788	SRA1153075	MDC Berlin\|BIMSB	MDC Berlin	2	0.83685	0.83734	0.08376	0.08206	0.67452	0.67738	0.47208	0.46848	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-11-10	Larval	Larval	Head	Nervous System
61720	61720	SRR13015578	SRX9466658	SRS7678785	SRP291905	PRJNA674002	A to I RNA editing in zebrafish during development	PRJNA674002	Other	Here we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw unmapped sequencing output from stranded mRNA libraries can be found under this accession.			zebrafish embryos 72hpf head	single cross 2 72hpf head.rep1		strain:AB wildtype\|dev stage:72 hpf\|sex:unknown\|tissue:head\|embryos derived by cross:single cross 2\|biological replicate:replicate 1\|assay type:mRNA seq\|BioSampleModel:Model organism or animal	mRNA seq of whole zebrafish embryos wildtype AB 72 hpf head single cross 2 Rep1 lane2	PJ KH 023 2	PJ KH 023 2	stranded mRNA			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 2500		SRP291905			PJ_KH_023_S23_L004_R1_001.fastq.gz PJ_KH_023_S23_L004_R2_001.fastq.gz	fastq fastq	6256736038.0	20717669.0	PJ KH 023 S23 L004 R1 001.fastq.gz	0:151 1:151	A:1682521012;C:1447539005;G:1492671488;T:1632844528;N:1160005	151	151	1682521012	1447539005	1492671488	1632844528	1160005	SRX9466658	SRS7678785	SRA1153075	MDC Berlin\|BIMSB	MDC Berlin	2	0.94403	0.94422	0.06806	0.06559	0.70849	0.71135	0.4781	0.47695	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-11-10	Larval	Larval	Head	Nervous System
61721	61721	SRR13015579	SRX9466657	SRS7678786	SRP291905	PRJNA674002	A to I RNA editing in zebrafish during development	PRJNA674002	Other	Here we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw unmapped sequencing output from stranded mRNA libraries can be found under this accession.			diencephalon male replicate 1	diencephalon male.rep1		strain:AB wildtype\|dev stage:adult\|sex:male\|tissue:diencephalon\|biological replicate:replicate 1\|assay type:mRNA seq\|BioSampleModel:Model organism or animal	mRNA Seq of zebrafish brain: adult male dienecephalon Rep1	1m4	1m4	stranded mRNA			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 2500		SRP291905			1m4_S15_L006_R1_001.fastq.gz 1m4_S15_L006_R2_001.fastq.gz	fastq fastq	7106405688.0	46752669.0	1m4 S15 L006 R1 001.fastq.gz	0:76 1:76	A:1748572830;C:1800701751;G:1764366917;T:1791473571;N:1290619	76	76	1748572830	1800701751	1764366917	1791473571	1290619	SRX9466657	SRS7678786	SRA1153075	MDC Berlin\|BIMSB	MDC Berlin	2	0.91598	0.91295	0.39083	0.38452	0.76272	0.76897	0.65954	0.63928	76	76	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-11-10	Adult	Adult	Brain	Nervous System
61722	61722	SRR13015580	SRX9466656	SRS7678785	SRP291905	PRJNA674002	A to I RNA editing in zebrafish during development	PRJNA674002	Other	Here we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw unmapped sequencing output from stranded mRNA libraries can be found under this accession.			zebrafish embryos 72hpf head	single cross 2 72hpf head.rep1		strain:AB wildtype\|dev stage:72 hpf\|sex:unknown\|tissue:head\|embryos derived by cross:single cross 2\|biological replicate:replicate 1\|assay type:mRNA seq\|BioSampleModel:Model organism or animal	mRNA seq of whole zebrafish embryos wildtype AB 72 hpf head single cross 2 Rep1 lane1	PJ KH 023 1	PJ KH 023 1	stranded mRNA			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 2500		SRP291905			PJ_KH_023_S23_L003_R1_001.fastq.gz PJ_KH_023_S23_L003_R2_001.fastq.gz	fastq fastq	6172422772.0	20438486.0	PJ KH 023 S23 L003 R1 001.fastq.gz	0:151 1:151	A:1661367824;C:1426239358;G:1473404055;T:1610579269;N:832266	151	151	1661367824	1426239358	1473404055	1610579269	832266	SRX9466656	SRS7678785	SRA1153075	MDC Berlin\|BIMSB	MDC Berlin	2	0.94408	0.94436	0.06817	0.06648	0.71074	0.71388	0.47742	0.47763	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-11-10	Larval	Larval	Head	Nervous System
61727	61727	SRR13015585	SRX9466651	SRS7678782	SRP291905	PRJNA674002	A to I RNA editing in zebrafish during development	PRJNA674002	Other	Here we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw unmapped sequencing output from stranded mRNA libraries can be found under this accession.			zebrafish embryos 72hpf head	single cross 1 72hpf head.rep2		strain:AB wildtype\|dev stage:72 hpf\|sex:unknown\|tissue:head\|embryos derived by cross:single cross 1\|biological replicate:replicate 2\|assay type:mRNA seq\|BioSampleModel:Model organism or animal	mRNA seq of whole zebrafish embryos wildtype AB 72 hpf head single cross 1 Rep2 lane2	PJ KH 020 2	PJ KH 020 2	stranded mRNA			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 2500		SRP291905			PJ_KH_020_S20_L004_R1_001.fastq.gz PJ_KH_020_S20_L004_R2_001.fastq.gz	fastq fastq	6745348180.0	22335590.0	PJ KH 020 S20 L004 R1 001.fastq.gz	0:151 1:151	A:1776789651;C:1593504281;G:1638208135;T:1735588434;N:1257679	151	151	1776789651	1593504281	1638208135	1735588434	1257679	SRX9466651	SRS7678782	SRA1153075	MDC Berlin\|BIMSB	MDC Berlin	2	0.95721	0.96048	0.07705	0.07603	0.7109	0.71463	0.42624	0.41885	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-11-10	Larval	Larval	Head	Nervous System
61728	61728	SRR13015586	SRX9466650	SRS7678782	SRP291905	PRJNA674002	A to I RNA editing in zebrafish during development	PRJNA674002	Other	Here we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw unmapped sequencing output from stranded mRNA libraries can be found under this accession.			zebrafish embryos 72hpf head	single cross 1 72hpf head.rep2		strain:AB wildtype\|dev stage:72 hpf\|sex:unknown\|tissue:head\|embryos derived by cross:single cross 1\|biological replicate:replicate 2\|assay type:mRNA seq\|BioSampleModel:Model organism or animal	mRNA seq of whole zebrafish embryos wildtype AB 72 hpf head single cross 1 Rep2 lane1	PJ KH 020 1	PJ KH 020 1	stranded mRNA			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 2500		SRP291905			PJ_KH_020_S20_L003_R1_001.fastq.gz PJ_KH_020_S20_L003_R2_001.fastq.gz	fastq fastq	6729174570.0	22282035.0	PJ KH 020 S20 L003 R1 001.fastq.gz	0:151 1:151	A:1774094248;C:1587891896;G:1635085296;T:1731190595;N:912535	151	151	1774094248	1587891896	1635085296	1731190595	912535	SRX9466650	SRS7678782	SRA1153075	MDC Berlin\|BIMSB	MDC Berlin	2	0.95736	0.96066	0.07726	0.07635	0.71082	0.71435	0.42984	0.42332	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-11-10	Larval	Larval	Head	Nervous System
61729	61729	SRR13015587	SRX9466649	SRS7678781	SRP291905	PRJNA674002	A to I RNA editing in zebrafish during development	PRJNA674002	Other	Here we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw unmapped sequencing output from stranded mRNA libraries can be found under this accession.			zebrafish embryos 72hpf head	single cross 1 72hpf head.rep1		strain:AB wildtype\|dev stage:72 hpf\|sex:unknown\|tissue:head\|embryos derived by cross:single cross 1\|biological replicate:replicate 1\|assay type:mRNA seq\|BioSampleModel:Model organism or animal	mRNA seq of whole zebrafish embryos wildtype AB 72 hpf head single cross 1 Rep1 lane2	PJ KH 019 2	PJ KH 019 2	stranded mRNA			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 2500		SRP291905			PJ_KH_019_S19_L004_R1_001.fastq.gz PJ_KH_019_S19_L004_R2_001.fastq.gz	fastq fastq	6593199976.0	21831788.0	PJ KH 019 S19 L004 R1 001.fastq.gz	0:151 1:151	A:1810838908;C:1489027477;G:1536979505;T:1755131961;N:1222125	151	151	1810838908	1489027477	1536979505	1755131961	1222125	SRX9466649	SRS7678781	SRA1153075	MDC Berlin\|BIMSB	MDC Berlin	2	0.94258	0.94483	0.12584	0.12382	0.66048	0.66186	0.46479	0.46294	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-11-10	Larval	Larval	Head	Nervous System
61730	61730	SRR13015588	SRX9466648	SRS7678781	SRP291905	PRJNA674002	A to I RNA editing in zebrafish during development	PRJNA674002	Other	Here we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw unmapped sequencing output from stranded mRNA libraries can be found under this accession.			zebrafish embryos 72hpf head	single cross 1 72hpf head.rep1		strain:AB wildtype\|dev stage:72 hpf\|sex:unknown\|tissue:head\|embryos derived by cross:single cross 1\|biological replicate:replicate 1\|assay type:mRNA seq\|BioSampleModel:Model organism or animal	mRNA seq of whole zebrafish embryos wildtype AB 72 hpf head single cross 1 Rep1 lane1	PJ KH 019 1	PJ KH 019 1	stranded mRNA			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 2500		SRP291905			PJ_KH_019_S19_L003_R1_001.fastq.gz PJ_KH_019_S19_L003_R2_001.fastq.gz	fastq fastq	6448860284.0	21353842.0	PJ KH 019 S19 L003 R1 001.fastq.gz	0:151 1:151	A:1772421932;C:1455472902;G:1504524766;T:1715573168;N:867516	151	151	1772421932	1455472902	1504524766	1715573168	867516	SRX9466648	SRS7678781	SRA1153075	MDC Berlin\|BIMSB	MDC Berlin	2	0.9419	0.9441	0.12553	0.12393	0.65963	0.66257	0.46785	0.46982	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-11-10	Larval	Larval	Head	Nervous System
61732	61732	SRR13015590	SRX9466646	SRS7678780	SRP291905	PRJNA674002	A to I RNA editing in zebrafish during development	PRJNA674002	Other	Here we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw unmapped sequencing output from stranded mRNA libraries can be found under this accession.			optic tectum male replicate 1	optic tectum male.rep1		strain:AB wildtype\|dev stage:adult\|sex:male\|tissue:optic tectum\|biological replicate:replicate 1\|assay type:mRNA seq\|BioSampleModel:Model organism or animal	mRNA Seq of zebrafish brain: adult male optic tectum Rep1	1m3	1m3	stranded mRNA			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 2500		SRP291905			1m3_S14_L006_R1_001.fastq.gz 1m3_S14_L006_R2_001.fastq.gz	fastq fastq	5372174304.0	35343252.0	1m3 S14 L006 R1 001.fastq.gz	0:76 1:76	A:1300948390;C:1375733977;G:1357794659;T:1336735104;N:962174	76	76	1300948390	1375733977	1357794659	1336735104	962174	SRX9466646	SRS7678780	SRA1153075	MDC Berlin\|BIMSB	MDC Berlin	2	0.91004	0.90929	0.3956	0.3953	0.77402	0.7796	0.66693	0.67289	76	76	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-11-10	Adult	Adult	Brain	Nervous System
61743	61743	SRR13015601	SRX9466635	SRS7678775	SRP291905	PRJNA674002	A to I RNA editing in zebrafish during development	PRJNA674002	Other	Here we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw unmapped sequencing output from stranded mRNA libraries can be found under this accession.			telencephalon male replicate 1	telencephalon male.rep1		strain:AB wildtype\|dev stage:adult\|sex:male\|tissue:telencephalon\|biological replicate:replicate 1\|assay type:mRNA seq\|BioSampleModel:Model organism or animal	mRNA Seq of zebrafish brain: adult male telencephalon Rep1	1m2	1m2	stranded mRNA			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 2500		SRP291905			1m2_S11_L006_R1_001.fastq.gz 1m2_S11_L006_R2_001.fastq.gz	fastq fastq	5384962824.0	35427387.0	1m2 S11 L006 R1 001.fastq.gz	0:76 1:76	A:1271209260;C:1421101122;G:1397017405;T:1294662766;N:972271	76	76	1271209260	1421101122	1397017405	1294662766	972271	SRX9466635	SRS7678775	SRA1153075	MDC Berlin\|BIMSB	MDC Berlin	2	0.91707	0.91476	0.37268	0.36988	0.77863	0.78242	0.64111	0.64265	76	76	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-11-10	Adult	Adult	Brain	Nervous System
61754	61754	SRR13015612	SRX9466624	SRS7678769	SRP291905	PRJNA674002	A to I RNA editing in zebrafish during development	PRJNA674002	Other	Here we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw unmapped sequencing output from stranded mRNA libraries can be found under this accession.			diencephalon female replicate 1	diencephalon female.rep1		strain:AB wildtype\|dev stage:adult\|sex:female\|tissue:diencephalon\|biological replicate:replicate 1\|assay type:mRNA seq\|BioSampleModel:Model organism or animal	mRNA Seq of zebrafish brain: adult female dienecephalon Rep1	1f4	1f4	stranded mRNA			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 2500		SRP291905			1f4_S10_L006_R1_001.fastq.gz 1f4_S10_L006_R2_001.fastq.gz	fastq fastq	3064472.0	20161.0	1f4 S10 L006 R1 001.fastq.gz	0:76 1:76	A:736584;C:899236;G:655397;T:772517;N:738	76	76	736584	899236	655397	772517	738	SRX9466624	SRS7678769	SRA1153075	MDC Berlin\|BIMSB	MDC Berlin	2	0.67352	0.6332	0.33896	0.32413	0.95526	0.96936	0.62561	0.65031	76	76	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-11-10	Adult	Adult	Brain	Nervous System
61765	61765	SRR13015623	SRX9466613	SRS7678762	SRP291905	PRJNA674002	A to I RNA editing in zebrafish during development	PRJNA674002	Other	Here we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw unmapped sequencing output from stranded mRNA libraries can be found under this accession.			optic tectum female replicate 1	optic tectum female.rep1		strain:AB wildtype\|dev stage:adult\|sex:female\|tissue:optic tectum\|biological replicate:replicate 1\|assay type:mRNA seq\|BioSampleModel:Model organism or animal	mRNA Seq of zebrafish brain: adult female optic tectum Rep1	1f3	1f3	stranded mRNA			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 2500		SRP291905			1f3_S9_L005_R1_001.fastq.gz 1f3_S9_L005_R2_001.fastq.gz	fastq fastq	4946030296.0	32539673.0	1f3 S9 L005 R1 001.fastq.gz	0:76 1:76	A:1208781575;C:1261930618;G:1235784163;T:1238616764;N:917176	76	76	1208781575	1261930618	1235784163	1238616764	917176	SRX9466613	SRS7678762	SRA1153075	MDC Berlin\|BIMSB	MDC Berlin	2	0.90172	0.90352	0.39035	0.39306	0.75369	0.76108	0.64318	0.64239	76	76	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-11-10	Adult	Adult	Brain	Nervous System
61771	61771	SRR13015629	SRX9466607	SRS7678759	SRP291905	PRJNA674002	A to I RNA editing in zebrafish during development	PRJNA674002	Other	Here we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw unmapped sequencing output from stranded mRNA libraries can be found under this accession.			hindbrain female replicate 2	hindbrain female.rep2		strain:AB wildtype\|dev stage:adult\|sex:female\|tissue:hindbrain\|biological replicate:replicate 2\|assay type:mRNA seq\|BioSampleModel:Model organism or animal	mRNA Seq of zebrafish brain: adult male hindbrain Rep2	2f6	2f6	stranded mRNA			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 2500		SRP291905			2f6_S5_L005_R1_001.fastq.gz 2f6_S5_L005_R2_001.fastq.gz	fastq fastq	5041568224.0	33168212.0	2f6 S5 L005 R1 001.fastq.gz	0:76 1:76	A:1290901295;C:1222663984;G:1218187446;T:1308860675;N:954824	76	76	1290901295	1222663984	1218187446	1308860675	954824	SRX9466607	SRS7678759	SRA1153075	MDC Berlin\|BIMSB	MDC Berlin	2	0.88165	0.88354	0.38338	0.38078	0.75256	0.75627	0.6062	0.60318	76	76	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-11-10	Adult	Adult	Brain	Nervous System
61772	61772	SRR13015630	SRX9466606	SRS7678758	SRP291905	PRJNA674002	A to I RNA editing in zebrafish during development	PRJNA674002	Other	Here we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw unmapped sequencing output from stranded mRNA libraries can be found under this accession.			cerebellum female replicate 2	cerebellum female.rep2		strain:AB wildtype\|dev stage:adult\|sex:female\|tissue:cerebellum\|biological replicate:replicate 2\|assay type:mRNA seq\|BioSampleModel:Model organism or animal	mRNA Seq of zebrafish brain: adult male cerebellum Rep2	2f5	2f5	stranded mRNA			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 2500		SRP291905			2f5_S8_L005_R1_001.fastq.gz 2f5_S8_L005_R2_001.fastq.gz	fastq fastq	4713828256.0	31012028.0	2f5 S8 L005 R1 001.fastq.gz	0:76 1:76	A:1197139755;C:1144383860;G:1143780145;T:1227643151;N:881345	76	76	1197139755	1144383860	1143780145	1227643151	881345	SRX9466606	SRS7678758	SRA1153075	MDC Berlin\|BIMSB	MDC Berlin	2	0.89227	0.8935	0.40787	0.40518	0.76664	0.77264	0.62466	0.6514	76	76	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-11-10	Adult	Adult	Brain	Nervous System
61773	61773	SRR13015631	SRX9466605	SRS7678757	SRP291905	PRJNA674002	A to I RNA editing in zebrafish during development	PRJNA674002	Other	Here we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw unmapped sequencing output from stranded mRNA libraries can be found under this accession.			diencephalon female replicate 2	diencephalon female.rep2		strain:AB wildtype\|dev stage:adult\|sex:female\|tissue:diencephalon\|biological replicate:replicate 2\|assay type:mRNA seq\|BioSampleModel:Model organism or animal	mRNA Seq of zebrafish brain: adult female dienecephalon Rep2	2f4	2f4	stranded mRNA			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 2500		SRP291905			2f4_S7_L005_R1_001.fastq.gz 2f4_S7_L005_R2_001.fastq.gz	fastq fastq	5231040024.0	34414737.0	2f4 S7 L005 R1 001.fastq.gz	0:76 1:76	A:1224437928;C:1375777868;G:1402575923;T:1227269442;N:978863	76	76	1224437928	1375777868	1402575923	1227269442	978863	SRX9466605	SRS7678757	SRA1153075	MDC Berlin\|BIMSB	MDC Berlin	2	0.89078	0.92189	0.29515	0.30111	0.77496	0.77871	0.66352	0.69988	76	76	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	Germany	2020-11-10	Adult	Adult	Brain	Nervous System

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;