metadata: run_metadata: 18 rows where experiment.library_selection = "Oligo-dT", technology = "unknown" and tissue_curation

18 rows where experiment.library_selection = "Oligo-dT", technology = "unknown" and tissue_curation_coarse = "Cell Line"

descending

Link	rowid ▼	run.accession	experiment.accession	sample.accession	study.accession	bioproject	study.title	study.alias	study.type	study.abstract	sample.description	sample.alias	sample.attributes	experiment.title	experiment.alias	experiment.library_name	experiment.design_description	experiment.library_strategy	experiment.library_source	experiment.library_selection	experiment.library_layout	experiment.platform	experiment.instrument_model	experiment.study_ref	run.filename	run.semantic_name	run.total_bases	run.total_spots	run.alias	run.read_lengths	run.base_counts	run.r1_length	run.r2_length	run.Acount	run.Ccount	run.Gcount	run.Tcount	run.Ncount	run.experiment	run.pool_member	submission.accession	submission.srasource	submission.bioprojectsource	seqdetective.n_mates	seqdetective.mapping_rate.mate1	seqdetective.mapping_rate.mate2	seqdetective.nofeature_rate.mate1	seqdetective.nofeature_rate.mate2	seqdetective.sparsity.mate1	seqdetective.sparsity.mate2	seqdetective.pos_strand_rate.mate1	seqdetective.pos_strand_rate.mate2	seqdetective.readlen.mate1	seqdetective.readlen.mate2	seqdetective.judgement.mate1	seqdetective.judgement.mate2	seqdetective.judgement.reason	platform_family	instrument_generation	read_bias	selection_class	prep_kit	sc_or_bulk	tech_class	technology	submission.bioprojectsource.country	earliest_date	devstage_curation	devstage_curation_coarse	tissue_curation	tissue_curation_coarse
28458	28458	SRR26265233	SRX21974767	SRS19050630	SRP464312	PRJNA1022576	Danio rerio Raw sequence reads	PRJNA1022576	Whole Genome Sequencing	In teleost type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes conferring cell resistance to viruses. However the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4 ZF4 cells were stimulated with recombinant IFN1 and IFN4 and were performed transcriptome analysis.		IFN4 2	strain:not collected\|age:not collected\|collection date:2023 08 20\|geo loc name:not collected\|sex:not collected\|tissue:not collected\|cell line:ZF4\|replicate:biological replicate 10\|BioSampleModel:Model organism or animal	RNAseq of zebrafish	IFND2	IFND2	normal RNA seq of zebrafish	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP464312	IFN4-2.R2.fq.gz IFN4-2.R1.fq.gz	fastq fastq	6934783900.0	23533465.0	IFN4 2.R1.fq.gz	0:147.35 1:147.33	A:1868083790;C:1590902416;G:1598661179;T:1876555558;N:580957	147	147	1868083790	1590902416	1598661179	1876555558	580957	SRX21974767	SRS19050630	SRA1725060	Shanghai Ocean University\|College of Fisheries and Life Science	Shanghai Ocean University	2	0.95226	0.95256	0.09237	0.09199	0.73403	0.73472	0.50112	0.4946	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2023-10-03	Undetermined	Undetermined	Cell Line	Cell Line
28459	28459	SRR26265234	SRX21974766	SRS19050629	SRP464312	PRJNA1022576	Danio rerio Raw sequence reads	PRJNA1022576	Whole Genome Sequencing	In teleost type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes conferring cell resistance to viruses. However the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4 ZF4 cells were stimulated with recombinant IFN1 and IFN4 and were performed transcriptome analysis.		IFN4 1	strain:not collected\|age:not collected\|collection date:2023 08 20\|geo loc name:not collected\|sex:not collected\|tissue:not collected\|cell line:ZF4\|replicate:biological replicate 9\|BioSampleModel:Model organism or animal	RNAseq of zebrafish	IFND1	IFND1	normal RNA seq of zebrafish	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP464312	IFN4-1.R2.fq.gz IFN4-1.R1.fq.gz	fastq fastq	6955503146.0	23557276.0	IFN4 1.R1.fq.gz	0:147.65 1:147.61	A:1873984869;C:1595727817;G:1603714470;T:1881209728;N:866262	147	147	1873984869	1595727817	1603714470	1881209728	866262	SRX21974766	SRS19050629	SRA1725060	Shanghai Ocean University\|College of Fisheries and Life Science	Shanghai Ocean University	2	0.95329	0.95472	0.09371	0.09311	0.73535	0.7362	0.49542	0.49872	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2023-10-03	Undetermined	Undetermined	Cell Line	Cell Line
28460	28460	SRR26265235	SRX21974765	SRS19050628	SRP464312	PRJNA1022576	Danio rerio Raw sequence reads	PRJNA1022576	Whole Genome Sequencing	In teleost type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes conferring cell resistance to viruses. However the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4 ZF4 cells were stimulated with recombinant IFN1 and IFN4 and were performed transcriptome analysis.		IFN1 4	strain:not collected\|age:not collected\|collection date:2023 08 20\|geo loc name:not collected\|sex:not collected\|tissue:not collected\|cell line:ZF4\|replicate:biological replicate 8\|BioSampleModel:Model organism or animal	RNAseq of zebrafish	IFNA4	IFNA4	normal RNA seq of zebrafish	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP464312	IFN1-4.R1.fq.gz IFN1-4.R2.fq.gz	fastq fastq	6497442039.0	22025966.0	IFN1 4.R1.fq.gz	0:147.50 1:147.49	A:1752434033;C:1488528327;G:1495225910;T:1760699235;N:554534	147	147	1752434033	1488528327	1495225910	1760699235	554534	SRX21974765	SRS19050628	SRA1725060	Shanghai Ocean University\|College of Fisheries and Life Science	Shanghai Ocean University	2	0.95168	0.95288	0.09073	0.09058	0.73691	0.73697	0.49659	0.49706	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2023-10-03	Undetermined	Undetermined	Cell Line	Cell Line
28461	28461	SRR26265236	SRX21974764	SRS19050627	SRP464312	PRJNA1022576	Danio rerio Raw sequence reads	PRJNA1022576	Whole Genome Sequencing	In teleost type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes conferring cell resistance to viruses. However the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4 ZF4 cells were stimulated with recombinant IFN1 and IFN4 and were performed transcriptome analysis.		IFN1 3	strain:not collected\|age:not collected\|collection date:2023 08 20\|geo loc name:not collected\|sex:not collected\|tissue:not collected\|cell line:ZF4\|replicate:biological replicate 7\|BioSampleModel:Model organism or animal	RNAseq of zebrafish	IFNA3	IFNA3	normal RNA seq of zebrafish	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP464312	IFN1-3.R1.fq.gz IFN1-3.R2.fq.gz	fastq fastq	6258791362.0	21164255.0	IFN1 3.R1.fq.gz	0:147.88 1:147.85	A:1687323085;C:1434335716;G:1441365307;T:1695236268;N:530986	147	147	1687323085	1434335716	1441365307	1695236268	530986	SRX21974764	SRS19050627	SRA1725060	Shanghai Ocean University\|College of Fisheries and Life Science	Shanghai Ocean University	2	0.95206	0.95262	0.09255	0.09194	0.73549	0.73503	0.49685	0.50433	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2023-10-03	Undetermined	Undetermined	Cell Line	Cell Line
28462	28462	SRR26265237	SRX21974763	SRS19050626	SRP464312	PRJNA1022576	Danio rerio Raw sequence reads	PRJNA1022576	Whole Genome Sequencing	In teleost type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes conferring cell resistance to viruses. However the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4 ZF4 cells were stimulated with recombinant IFN1 and IFN4 and were performed transcriptome analysis.		IFN1 2	strain:not collected\|age:not collected\|collection date:2023 08 20\|geo loc name:not collected\|sex:not collected\|tissue:not collected\|cell line:ZF4\|replicate:biological replicate 6\|BioSampleModel:Model organism or animal	RNAseq of zebrafish	IFNA2	IFNA2	normal RNA seq of zebrafish	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP464312	IFN1-2.R1.fq.gz IFN1-2.R2.fq.gz	fastq fastq	5566110483.0	18875664.0	IFN1 2.R1.fq.gz	0:147.46 1:147.43	A:1498457518;C:1278011392;G:1284254482;T:1504942516;N:444575	147	147	1498457518	1278011392	1284254482	1504942516	444575	SRX21974763	SRS19050626	SRA1725060	Shanghai Ocean University\|College of Fisheries and Life Science	Shanghai Ocean University	2	0.95197	0.9524	0.09035	0.08962	0.73606	0.73634	0.50146	0.49994	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2023-10-03	Undetermined	Undetermined	Cell Line	Cell Line
28463	28463	SRR26265238	SRX21974762	SRS19050625	SRP464312	PRJNA1022576	Danio rerio Raw sequence reads	PRJNA1022576	Whole Genome Sequencing	In teleost type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes conferring cell resistance to viruses. However the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4 ZF4 cells were stimulated with recombinant IFN1 and IFN4 and were performed transcriptome analysis.		IFN1 1	strain:not collected\|age:not collected\|collection date:2023 08 20\|geo loc name:not collected\|sex:not collected\|tissue:not collected\|cell line:ZF4\|replicate:biological replicate 5\|BioSampleModel:Model organism or animal	RNAseq of zebrafish	IFNA1	IFNA1	normal RNA seq of zebrafish	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP464312	IFN1-1.R1.fq.gz IFN1-1.R2.fq.gz	fastq fastq	6919610192.0	23425305.0	IFN1 1.R1.fq.gz	0:147.71 1:147.68	A:1863998722;C:1587286271;G:1595557648;T:1872190552;N:576999	147	147	1863998722	1587286271	1595557648	1872190552	576999	SRX21974762	SRS19050625	SRA1725060	Shanghai Ocean University\|College of Fisheries and Life Science	Shanghai Ocean University	2	0.95297	0.95392	0.08926	0.0886	0.73744	0.73716	0.48737	0.49536	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2023-10-03	Undetermined	Undetermined	Cell Line	Cell Line
28464	28464	SRR26265239	SRX21974761	SRS19050624	SRP464312	PRJNA1022576	Danio rerio Raw sequence reads	PRJNA1022576	Whole Genome Sequencing	In teleost type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes conferring cell resistance to viruses. However the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4 ZF4 cells were stimulated with recombinant IFN1 and IFN4 and were performed transcriptome analysis.		Control 4	strain:not collected\|age:not collected\|collection date:2023 08 20\|geo loc name:not collected\|sex:not collected\|tissue:not collected\|cell line:ZF4\|replicate:biological replicate 4\|BioSampleModel:Model organism or animal	RNAseq of zebrafish	C4	C4	normal RNA seq of zebrafish	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP464312	Control-4.R1.fq.gz Control-4.R2.fq.gz	fastq fastq	7048754711.0	23843338.0	Control 4.R1.fq.gz	0:147.83 1:147.80	A:1886695953;C:1629137936;G:1637672845;T:1894536437;N:711540	147	147	1886695953	1629137936	1637672845	1894536437	711540	SRX21974761	SRS19050624	SRA1725060	Shanghai Ocean University\|College of Fisheries and Life Science	Shanghai Ocean University	2	0.9556	0.95723	0.09014	0.08984	0.73533	0.73643	0.50146	0.50134	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2023-10-03	Undetermined	Undetermined	Cell Line	Cell Line
28465	28465	SRR26265240	SRX21974760	SRS19050623	SRP464312	PRJNA1022576	Danio rerio Raw sequence reads	PRJNA1022576	Whole Genome Sequencing	In teleost type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes conferring cell resistance to viruses. However the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4 ZF4 cells were stimulated with recombinant IFN1 and IFN4 and were performed transcriptome analysis.		Control 3	strain:not collected\|age:not collected\|collection date:2023 08 20\|geo loc name:not collected\|sex:not collected\|tissue:not collected\|cell line:ZF4\|replicate:biological replicate 3\|BioSampleModel:Model organism or animal	RNAseq of zebrafish	C3	C3	normal RNA seq of zebrafish	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP464312	Control-3.R1.fq.gz Control-3.R2.fq.gz	fastq fastq	6936430397.0	23495179.0	Control 3.R1.fq.gz	0:147.63 1:147.60	A:1861679698;C:1598594022;G:1606747561;T:1868699697;N:709419	147	147	1861679698	1598594022	1606747561	1868699697	709419	SRX21974760	SRS19050623	SRA1725060	Shanghai Ocean University\|College of Fisheries and Life Science	Shanghai Ocean University	2	0.95496	0.95472	0.09092	0.08958	0.73505	0.73586	0.50541	0.50256	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2023-10-03	Undetermined	Undetermined	Cell Line	Cell Line
28466	28466	SRR26265241	SRX21974759	SRS19050622	SRP464312	PRJNA1022576	Danio rerio Raw sequence reads	PRJNA1022576	Whole Genome Sequencing	In teleost type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes conferring cell resistance to viruses. However the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4 ZF4 cells were stimulated with recombinant IFN1 and IFN4 and were performed transcriptome analysis.		IFN4 4	strain:not collected\|age:not collected\|collection date:2023 08 20\|geo loc name:not collected\|sex:not collected\|tissue:not collected\|cell line:ZF4\|replicate:biological replicate 12\|BioSampleModel:Model organism or animal	RNAseq of zebrafish	IFND4	IFND4	normal RNA seq of zebrafish	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP464312	IFN4-4.R1.fq.gz IFN4-4.R2.fq.gz	fastq fastq	6904025687.0	23391394.0	IFN4 4.R1.fq.gz	0:147.59 1:147.56	A:1858866141;C:1585020535;G:1592940944;T:1866550686;N:647381	147	147	1858866141	1585020535	1592940944	1866550686	647381	SRX21974759	SRS19050622	SRA1725060	Shanghai Ocean University\|College of Fisheries and Life Science	Shanghai Ocean University	2	0.95345	0.95394	0.08901	0.08834	0.73537	0.73596	0.50012	0.49674	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2023-10-03	Undetermined	Undetermined	Cell Line	Cell Line
28467	28467	SRR26265242	SRX21974758	SRS19050621	SRP464312	PRJNA1022576	Danio rerio Raw sequence reads	PRJNA1022576	Whole Genome Sequencing	In teleost type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes conferring cell resistance to viruses. However the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4 ZF4 cells were stimulated with recombinant IFN1 and IFN4 and were performed transcriptome analysis.		IFN4 3	strain:not collected\|age:not collected\|collection date:2023 08 20\|geo loc name:not collected\|sex:not collected\|tissue:not collected\|cell line:ZF4\|replicate:biological replicate 11\|BioSampleModel:Model organism or animal	RNAseq of zebrafish	IFND3	IFND3	normal RNA seq of zebrafish	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP464312	IFN4-3.R1.fq.gz IFN4-3.R2.fq.gz	fastq fastq	6983243474.0	23627912.0	IFN4 3.R1.fq.gz	0:147.80 1:147.75	A:1880838380;C:1603492441;G:1611871993;T:1885974103;N:1066557	147	147	1880838380	1603492441	1611871993	1885974103	1066557	SRX21974758	SRS19050621	SRA1725060	Shanghai Ocean University\|College of Fisheries and Life Science	Shanghai Ocean University	2	0.95262	0.95399	0.09442	0.09269	0.73586	0.73519	0.50113	0.49912	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2023-10-03	Undetermined	Undetermined	Cell Line	Cell Line
28468	28468	SRR26265243	SRX21974757	SRS19050620	SRP464312	PRJNA1022576	Danio rerio Raw sequence reads	PRJNA1022576	Whole Genome Sequencing	In teleost type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes conferring cell resistance to viruses. However the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4 ZF4 cells were stimulated with recombinant IFN1 and IFN4 and were performed transcriptome analysis.		Control 2	strain:not collected\|age:not collected\|collection date:2023 08 20\|geo loc name:not collected\|sex:not collected\|tissue:not collected\|cell line:ZF4\|replicate:biological replicate 2\|BioSampleModel:Model organism or animal	RNAseq of zebrafish	C2	C2	normal RNA seq of zebrafish	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP464312	Control-2.R1.fq.gz Control-2.R2.fq.gz	fastq fastq	7064416471.0	23901145.0	Control 2.R1.fq.gz	0:147.80 1:147.77	A:1896430007;C:1626943513;G:1635235356;T:1905174563;N:633032	147	147	1896430007	1626943513	1635235356	1905174563	633032	SRX21974757	SRS19050620	SRA1725060	Shanghai Ocean University\|College of Fisheries and Life Science	Shanghai Ocean University	2	0.95546	0.95678	0.08984	0.08994	0.73535	0.73565	0.49891	0.49705	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2023-10-03	Undetermined	Undetermined	Cell Line	Cell Line
28469	28469	SRR26265244	SRX21974756	SRS19050619	SRP464312	PRJNA1022576	Danio rerio Raw sequence reads	PRJNA1022576	Whole Genome Sequencing	In teleost type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes conferring cell resistance to viruses. However the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4 ZF4 cells were stimulated with recombinant IFN1 and IFN4 and were performed transcriptome analysis.		Control 1	strain:not collected\|age:not collected\|collection date:2023 08 20\|geo loc name:not collected\|sex:not collected\|tissue:not collected\|cell line:ZF4\|replicate:biological replicate 1\|BioSampleModel:Model organism or animal	RNAseq of zebrafish	C1	C1	normal RNA seq of zebrafish	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP464312	Control-1.R1.fq.gz Control-1.R2.fq.gz	fastq fastq	7005585889.0	23733330.0	Control 1.R1.fq.gz	0:147.61 1:147.57	A:1874251473;C:1620035540;G:1628125464;T:1882607735;N:565677	147	147	1874251473	1620035540	1628125464	1882607735	565677	SRX21974756	SRS19050619	SRA1725060	Shanghai Ocean University\|College of Fisheries and Life Science	Shanghai Ocean University	2	0.95539	0.95612	0.08699	0.08663	0.73777	0.73833	0.49693	0.49816	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2023-10-03	Undetermined	Undetermined	Cell Line	Cell Line
36007	36007	SRR33398626	SRX28641175	SRS24911532	SRP582620	PRJNA1256937	Transcriptome data of zebrafish	PRJNA1256937	Other	Zebrafish larvae were treated with carbimazole until 120 hpf aiming to explore the specific mechanisms by which the drug exerts toxicity on zebrafish	not collected	Ca 3	strain:not collected\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:not collected\|age:120hpf\|dev stage:120hpf\|collection date:2024 12 21\|geo loc name:China: Fujian Fuzhou\|sex:not determined\|tissue:Fry\|biomaterial provider:Fuzhou University School of Biological Science and Engineering Institute of Life Sciences Room 212\|cell line:not collected\|cell type:not collected\|collected by:not collected\|culture collection:not collected\|disease:not collected\|disease stg:not collected\|genotype:not collected\|health state:not collected\|isolation source:not collected\|lat lon:not collected\|phenotype:not collected\|sample type:not collected\|specimen voucher:not collected\|store cond:not collected\|BioSampleModel:Model organism or animal	RNA Seq of zebrafish larvae	Ca3	Ca3	First sample collection and processing the samples are from 5 dpf juvenile fish. Second conduct RNA extraction and quality detection. Then construct the library and perform sequencing on the machine. Finally carry out data analysis.	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP582620	Ca-3_merge.R1.fastq.gz Ca-3_merge.R2.fastq.gz	fastq fastq	6737357100.0	22457857.0	Ca 3 merge.R1.fastq.gz	0:150 1:150	A:1838531075;C:1527684677;G:1561100877;T:1809740217;N:300254	150	150	1838531075	1527684677	1561100877	1809740217	300254	SRX28641175	SRS24911532	SRA2121261	Fuzhou University, School of Biological Science and Engineering, Institute of Life Sciences, Room 20\|Fuzhou University	Fuzhou University, School of Biological Science and Engineering, Institute of Life Sciences, Room 20												B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2025-05-01	Larval	Larval	Cell Line	Cell Line
36008	36008	SRR33398627	SRX28641174	SRS24911531	SRP582620	PRJNA1256937	Transcriptome data of zebrafish	PRJNA1256937	Other	Zebrafish larvae were treated with carbimazole until 120 hpf aiming to explore the specific mechanisms by which the drug exerts toxicity on zebrafish	not collected	Ca 2	strain:not collected\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:not collected\|age:120hpf\|dev stage:120hpf\|collection date:2024 12 20\|geo loc name:China: Fujian Fuzhou\|sex:not determined\|tissue:Fry\|biomaterial provider:Fuzhou University School of Biological Science and Engineering Institute of Life Sciences Room 211\|cell line:not collected\|cell type:not collected\|collected by:not collected\|culture collection:not collected\|disease:not collected\|disease stg:not collected\|genotype:not collected\|health state:not collected\|isolation source:not collected\|lat lon:not collected\|phenotype:not collected\|sample type:not collected\|specimen voucher:not collected\|store cond:not collected\|BioSampleModel:Model organism or animal	RNA Seq of zebrafish larvae	Ca2	Ca2	First sample collection and processing the samples are from 5 dpf juvenile fish. Second conduct RNA extraction and quality detection. Then construct the library and perform sequencing on the machine. Finally carry out data analysis.	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP582620	Ca-2_merge.R1.fastq.gz Ca-2_merge.R2.fastq.gz	fastq fastq	7269644400.0	24232148.0	Ca 2 merge.R1.fastq.gz	0:150 1:150	A:1977905783;C:1657807837;G:1689935893;T:1943719982;N:274905	150	150	1977905783	1657807837	1689935893	1943719982	274905	SRX28641174	SRS24911531	SRA2121261	Fuzhou University, School of Biological Science and Engineering, Institute of Life Sciences, Room 20\|Fuzhou University	Fuzhou University, School of Biological Science and Engineering, Institute of Life Sciences, Room 20												B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2025-05-01	Larval	Larval	Cell Line	Cell Line
36009	36009	SRR33398628	SRX28641173	SRS24911530	SRP582620	PRJNA1256937	Transcriptome data of zebrafish	PRJNA1256937	Other	Zebrafish larvae were treated with carbimazole until 120 hpf aiming to explore the specific mechanisms by which the drug exerts toxicity on zebrafish	not collected	Ca 1	strain:not collected\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:not collected\|age:120hpf\|dev stage:120hpf\|collection date:2024 12 19\|geo loc name:China: Fujian Fuzhou\|sex:not determined\|tissue:Fry\|biomaterial provider:Fuzhou University School of Biological Science and Engineering Institute of Life Sciences Room 210\|cell line:not collected\|cell type:not collected\|collected by:not collected\|culture collection:not collected\|disease:not collected\|disease stg:not collected\|genotype:not collected\|health state:not collected\|isolation source:not collected\|lat lon:not collected\|phenotype:not collected\|sample type:not collected\|specimen voucher:not collected\|store cond:not collected\|BioSampleModel:Model organism or animal	RNA Seq of zebrafish larvae	Ca1	Ca1	First sample collection and processing the samples are from 5 dpf juvenile fish. Second conduct RNA extraction and quality detection. Then construct the library and perform sequencing on the machine. Finally carry out data analysis.	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP582620	Ca-1_merge.R1.fastq.gz Ca-1_merge.R2.fastq.gz	fastq fastq	7116911700.0	23723039.0	Ca 1 merge.R1.fastq.gz	0:150 1:150	A:1950685415;C:1604814494;G:1640315886;T:1920831569;N:264336	150	150	1950685415	1604814494	1640315886	1920831569	264336	SRX28641173	SRS24911530	SRA2121261	Fuzhou University, School of Biological Science and Engineering, Institute of Life Sciences, Room 20\|Fuzhou University	Fuzhou University, School of Biological Science and Engineering, Institute of Life Sciences, Room 20												B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2025-05-01	Larval	Larval	Cell Line	Cell Line
36010	36010	SRR33398629	SRX28641172	SRS24911529	SRP582620	PRJNA1256937	Transcriptome data of zebrafish	PRJNA1256937	Other	Zebrafish larvae were treated with carbimazole until 120 hpf aiming to explore the specific mechanisms by which the drug exerts toxicity on zebrafish	not collected	WT 3	strain:not collected\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:not collected\|age:120hpf\|dev stage:120hpf\|collection date:2024 12 18\|geo loc name:China: Fujian Fuzhou\|sex:not determined\|tissue:Fry\|biomaterial provider:Fuzhou University School of Biological Science and Engineering Institute of Life Sciences Room 209\|cell line:not collected\|cell type:not collected\|collected by:not collected\|culture collection:not collected\|disease:not collected\|disease stg:not collected\|genotype:not collected\|health state:not collected\|isolation source:not collected\|lat lon:not collected\|phenotype:not collected\|sample type:not collected\|specimen voucher:not collected\|store cond:not collected\|BioSampleModel:Model organism or animal	RNA Seq of zebrafish larvae	WT3	WT3	First sample collection and processing the samples are from 5 dpf juvenile fish. Second conduct RNA extraction and quality detection. Then construct the library and perform sequencing on the machine. Finally carry out data analysis.	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP582620	WT-3_merge.R1.fastq.gz WT-3_merge.R2.fastq.gz	fastq fastq	6806732100.0	22689107.0	WT 3 merge.R1.fastq.gz	0:150 1:150	A:1844325028;C:1558003481;G:1585120438;T:1819030091;N:253062	150	150	1844325028	1558003481	1585120438	1819030091	253062	SRX28641172	SRS24911529	SRA2121261	Fuzhou University, School of Biological Science and Engineering, Institute of Life Sciences, Room 20\|Fuzhou University	Fuzhou University, School of Biological Science and Engineering, Institute of Life Sciences, Room 20												B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2025-05-01	Larval	Larval	Cell Line	Cell Line
36011	36011	SRR33398630	SRX28641171	SRS24911528	SRP582620	PRJNA1256937	Transcriptome data of zebrafish	PRJNA1256937	Other	Zebrafish larvae were treated with carbimazole until 120 hpf aiming to explore the specific mechanisms by which the drug exerts toxicity on zebrafish	not collected	WT 2	strain:not collected\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:not collected\|age:120hpf\|dev stage:120hpf\|collection date:2024 12 17\|geo loc name:China: Fujian Fuzhou\|sex:not determined\|tissue:Fry\|biomaterial provider:Fuzhou University School of Biological Science and Engineering Institute of Life Sciences Room 208\|cell line:not collected\|cell type:not collected\|collected by:not collected\|culture collection:not collected\|disease:not collected\|disease stg:not collected\|genotype:not collected\|health state:not collected\|isolation source:not collected\|lat lon:not collected\|phenotype:not collected\|sample type:not collected\|specimen voucher:not collected\|store cond:not collected\|BioSampleModel:Model organism or animal	RNA Seq of zebrafish larvae	WT2	WT2	First sample collection and processing the samples are from 5 dpf juvenile fish. Second conduct RNA extraction and quality detection. Then construct the library and perform sequencing on the machine. Finally carry out data analysis.	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP582620	WT-2_merge.R1.fastq.gz WT-2_merge.R2.fastq.gz	fastq fastq	9350997600.0	31169992.0	WT 2 merge.R1.fastq.gz	0:150 1:150	A:2531840914;C:2136380344;G:2177743101;T:2504682606;N:350635	150	150	2531840914	2136380344	2177743101	2504682606	350635	SRX28641171	SRS24911528	SRA2121261	Fuzhou University, School of Biological Science and Engineering, Institute of Life Sciences, Room 20\|Fuzhou University	Fuzhou University, School of Biological Science and Engineering, Institute of Life Sciences, Room 20												B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2025-05-01	Larval	Larval	Cell Line	Cell Line
36012	36012	SRR33398631	SRX28641170	SRS24911527	SRP582620	PRJNA1256937	Transcriptome data of zebrafish	PRJNA1256937	Other	Zebrafish larvae were treated with carbimazole until 120 hpf aiming to explore the specific mechanisms by which the drug exerts toxicity on zebrafish	not collected	WT 1	strain:not collected\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:not collected\|age:120hpf\|dev stage:120hpf\|collection date:2024 12 16\|geo loc name:China: Fujian Fuzhou\|sex:not determined\|tissue:Fry\|biomaterial provider:Fuzhou University School of Biological Science and Engineering Institute of Life Sciences Room 207\|cell line:not collected\|cell type:not collected\|collected by:not collected\|culture collection:not collected\|disease:not collected\|disease stg:not collected\|genotype:not collected\|health state:not collected\|isolation source:not collected\|lat lon:not collected\|phenotype:not collected\|sample type:not collected\|specimen voucher:not collected\|store cond:not collected\|BioSampleModel:Model organism or animal	RNA Seq of zebrafish larvae	WT1	WT1	First sample collection and processing the samples are from 5 dpf juvenile fish. Second conduct RNA extraction and quality detection. Then construct the library and perform sequencing on the machine. Finally carry out data analysis.	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP582620	WT-1_merge.R1.fastq.gz WT-1_merge.R2.fastq.gz	fastq fastq	8025342600.0	26751142.0	WT 1 merge.R1.fastq.gz	0:150 1:150	A:2210250425;C:1804024657;G:1840044555;T:2170729304;N:293659	150	150	2210250425	1804024657	1840044555	2170729304	293659	SRX28641170	SRS24911527	SRA2121261	Fuzhou University, School of Biological Science and Engineering, Institute of Life Sciences, Room 20\|Fuzhou University	Fuzhou University, School of Biological Science and Engineering, Institute of Life Sciences, Room 20												B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2025-05-01	Larval	Larval	Cell Line	Cell Line

Advanced export

JSON shape: default, array, newline-delimited

CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;