metadata: run_metadata: 54 rows where experiment.library_selection = "Oligo-dT", technology = "smartseq" and tissue

54 rows where experiment.library_selection = "Oligo-dT", technology = "smartseq" and tissue_curation = "Brain"

descending

Link	rowid ▼	run.accession	experiment.accession	sample.accession	study.accession	bioproject	study.title	study.alias	study.type	study.abstract	study.attributes	sample.description	sample.title	sample.alias	sample.centername	sample.attributes	experiment.title	experiment.alias	experiment.library_name	experiment.design_description	experiment.library_construction_protocol	experiment.attributes	experiment.library_strategy	experiment.library_source	experiment.library_selection	experiment.library_layout	experiment.platform	experiment.instrument_model	experiment.study_ref	run.title	run.attributes	run.filename	run.semantic_name	run.total_bases	run.total_spots	run.alias	run.read_lengths	run.base_counts	run.r1_length	run.r2_length	run.Acount	run.Ccount	run.Gcount	run.Tcount	run.Ncount	run.experiment	run.pool_member	submission.accession	submission.srasource	submission.bioprojectsource	seqdetective.n_mates	seqdetective.mapping_rate.mate1	seqdetective.mapping_rate.mate2	seqdetective.nofeature_rate.mate1	seqdetective.nofeature_rate.mate2	seqdetective.sparsity.mate1	seqdetective.sparsity.mate2	seqdetective.pos_strand_rate.mate1	seqdetective.pos_strand_rate.mate2	seqdetective.readlen.mate1	seqdetective.readlen.mate2	seqdetective.judgement.mate1	seqdetective.judgement.mate2	seqdetective.judgement.reason	platform_family	instrument_generation	read_bias	selection_class	prep_kit	sc_or_bulk	tech_class	technology	submission.bioprojectsource.country	earliest_date	devstage_curation	devstage_curation_coarse	tissue_curation	tissue_curation_coarse
10237	10237	ERR7131169	ERX6698608	ERS8070397	ERP132560	PRJEB48218	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E-MTAB-11083	Transcriptome Analysis	To investigate the effects of rabies infection on neuronal gene expression we compared gene profiles of rabies infected and non infected GABAergic neurons in the Zebrafish olfactory bulb.	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	Protocols: EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	F8 Nega	SAMEA10418613	Friedrich Miescher Institute for Biomedical Research	ENA first public:2021 12 01\|ENA last update:2021 12 01\|External Id:SAMEA10418613\|INSDC center alias:Friedrich Miescher Institute for Biomedical Research\|INSDC center name:Friedrich Miescher Institute for Biomedical Research\|INSDC first public:2021 12 01T00:23:59Z\|INSDC last update:2021 12 01T00:23:59Z\|INSDC status:public\|Submitter Id:E MTAB 11083:F8 Nega\|age:9\|broker name:ArrayExpress\|cell type:GABAergic neuron\|common name:zebrafish\|developmental stage:adult\|fraction:mCherry /GFP \|genotype:Tg[gad1b:Gal4 UAS:TVA mCherry]\|individual:pool 8\|organism part:olfactory bulb\|sample name:E MTAB 11083:F8 Nega\|sex:mixed\|stimulus:injected with EnvA RV GFP\|strain:Ab x Tu x TL x WIK	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E MTAB 11083:F8 Nega s	F8 Nega s	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	Experimental Factor: fraction:mCherry /GFP	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina HiSeq 2500	ERP132560	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	2874F22-1_210715_D00404_0538_BCD91CANXX_TCGACGTC-CTAAGCCT_L006_R1_001.fastq.gz	fastq	658093749.0	12903799.0	E MTAB 11083:2874F22 1 210715 D00404 0538 BCD91CANXX TCGACGTC CTAAGCCT L006	0:51 1:0	A:173355262;C:152464129;G:147489024;T:184739885;N:45449	51	0	173355262	152464129	147489024	184739885	45449	ERX6698608	ERS8070397	ERA6757553	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	1	0.78328		0.15147		0.71289		0.53671		51		B		usable mapping rate	illumina	hiseq_era	unknown	poly_a	nextera	sc	single_cell_plate	smartseq	Switzerland	2021-12-01	Adult	Adult	Brain	Nervous System
10238	10238	ERR7131170	ERX6698608	ERS8070397	ERP132560	PRJEB48218	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E-MTAB-11083	Transcriptome Analysis	To investigate the effects of rabies infection on neuronal gene expression we compared gene profiles of rabies infected and non infected GABAergic neurons in the Zebrafish olfactory bulb.	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	Protocols: EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	F8 Nega	SAMEA10418613	Friedrich Miescher Institute for Biomedical Research	ENA first public:2021 12 01\|ENA last update:2021 12 01\|External Id:SAMEA10418613\|INSDC center alias:Friedrich Miescher Institute for Biomedical Research\|INSDC center name:Friedrich Miescher Institute for Biomedical Research\|INSDC first public:2021 12 01T00:23:59Z\|INSDC last update:2021 12 01T00:23:59Z\|INSDC status:public\|Submitter Id:E MTAB 11083:F8 Nega\|age:9\|broker name:ArrayExpress\|cell type:GABAergic neuron\|common name:zebrafish\|developmental stage:adult\|fraction:mCherry /GFP \|genotype:Tg[gad1b:Gal4 UAS:TVA mCherry]\|individual:pool 8\|organism part:olfactory bulb\|sample name:E MTAB 11083:F8 Nega\|sex:mixed\|stimulus:injected with EnvA RV GFP\|strain:Ab x Tu x TL x WIK	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E MTAB 11083:F8 Nega s	F8 Nega s	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	Experimental Factor: fraction:mCherry /GFP	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina HiSeq 2500	ERP132560	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	2874F22-2_210715_D00404_0538_BCD91CANXX_TCGACGTC-CTAAGCCT_L007_R1_001.fastq.gz	fastq	661103769.0	12962819.0	E MTAB 11083:2874F22 2 210715 D00404 0538 BCD91CANXX TCGACGTC CTAAGCCT L007	0:51 1:0	A:174223249;C:153223284;G:148276805;T:185335092;N:45339	51	0	174223249	153223284	148276805	185335092	45339	ERX6698608	ERS8070397	ERA6757553	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	1	0.78539		0.15054		0.70897		0.5322		51		B		usable mapping rate	illumina	hiseq_era	unknown	poly_a	nextera	sc	single_cell_plate	smartseq	Switzerland	2021-12-01	Adult	Adult	Brain	Nervous System
10239	10239	ERR7131167	ERX6698607	ERS8070396	ERP132560	PRJEB48218	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E-MTAB-11083	Transcriptome Analysis	To investigate the effects of rabies infection on neuronal gene expression we compared gene profiles of rabies infected and non infected GABAergic neurons in the Zebrafish olfactory bulb.	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	Protocols: EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	F8 mCherry GFP	SAMEA10418612	Friedrich Miescher Institute for Biomedical Research	ENA first public:2021 12 01\|ENA last update:2021 12 01\|External Id:SAMEA10418612\|INSDC center alias:Friedrich Miescher Institute for Biomedical Research\|INSDC center name:Friedrich Miescher Institute for Biomedical Research\|INSDC first public:2021 12 01T00:23:59Z\|INSDC last update:2021 12 01T00:23:59Z\|INSDC status:public\|Submitter Id:E MTAB 11083:F8 mCherry GFP\|age:9\|broker name:ArrayExpress\|cell type:GABAergic neuron\|common name:zebrafish\|developmental stage:adult\|fraction:mCherry+/GFP+\|genotype:Tg[gad1b:Gal4 UAS:TVA mCherry]\|individual:pool 8\|organism part:olfactory bulb\|sample name:E MTAB 11083:F8 mCherry GFP\|sex:mixed\|stimulus:injected with EnvA RV GFP\|strain:Ab x Tu x TL x WIK	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E MTAB 11083:F8 mCherry GFP s	F8 mCherry GFP s	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	Experimental Factor: fraction:mCherry+/GFP+	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina HiSeq 2500	ERP132560	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	2874F24-1_210715_D00404_0538_BCD91CANXX_TCGACGTC-TCTCTCCG_L006_R1_001.fastq.gz	fastq	693183636.0	13591836.0	E MTAB 11083:2874F24 1 210715 D00404 0538 BCD91CANXX TCGACGTC TCTCTCCG L006	0:51 1:0	A:183977687;C:159275153;G:153149826;T:196732022;N:48948	51	0	183977687	159275153	153149826	196732022	48948	ERX6698607	ERS8070396	ERA6757553	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	1	0.68942		0.15593		0.75828		0.51858		51		B		usable mapping rate	illumina	hiseq_era	unknown	poly_a	nextera	sc	single_cell_plate	smartseq	Switzerland	2021-12-01	Adult	Adult	Brain	Nervous System
10240	10240	ERR7131168	ERX6698607	ERS8070396	ERP132560	PRJEB48218	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E-MTAB-11083	Transcriptome Analysis	To investigate the effects of rabies infection on neuronal gene expression we compared gene profiles of rabies infected and non infected GABAergic neurons in the Zebrafish olfactory bulb.	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	Protocols: EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	F8 mCherry GFP	SAMEA10418612	Friedrich Miescher Institute for Biomedical Research	ENA first public:2021 12 01\|ENA last update:2021 12 01\|External Id:SAMEA10418612\|INSDC center alias:Friedrich Miescher Institute for Biomedical Research\|INSDC center name:Friedrich Miescher Institute for Biomedical Research\|INSDC first public:2021 12 01T00:23:59Z\|INSDC last update:2021 12 01T00:23:59Z\|INSDC status:public\|Submitter Id:E MTAB 11083:F8 mCherry GFP\|age:9\|broker name:ArrayExpress\|cell type:GABAergic neuron\|common name:zebrafish\|developmental stage:adult\|fraction:mCherry+/GFP+\|genotype:Tg[gad1b:Gal4 UAS:TVA mCherry]\|individual:pool 8\|organism part:olfactory bulb\|sample name:E MTAB 11083:F8 mCherry GFP\|sex:mixed\|stimulus:injected with EnvA RV GFP\|strain:Ab x Tu x TL x WIK	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E MTAB 11083:F8 mCherry GFP s	F8 mCherry GFP s	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	Experimental Factor: fraction:mCherry+/GFP+	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina HiSeq 2500	ERP132560	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	2874F24-2_210715_D00404_0538_BCD91CANXX_TCGACGTC-TCTCTCCG_L007_R1_001.fastq.gz	fastq	696648678.0	13659778.0	E MTAB 11083:2874F24 2 210715 D00404 0538 BCD91CANXX TCGACGTC TCTCTCCG L007	0:51 1:0	A:184971832;C:160126524;G:154012023;T:197490098;N:48201	51	0	184971832	160126524	154012023	197490098	48201	ERX6698607	ERS8070396	ERA6757553	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	1	0.6906		0.15634		0.75909		0.51346		51		B		usable mapping rate	illumina	hiseq_era	unknown	poly_a	nextera	sc	single_cell_plate	smartseq	Switzerland	2021-12-01	Adult	Adult	Brain	Nervous System
10241	10241	ERR7131165	ERX6698606	ERS8070395	ERP132560	PRJEB48218	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E-MTAB-11083	Transcriptome Analysis	To investigate the effects of rabies infection on neuronal gene expression we compared gene profiles of rabies infected and non infected GABAergic neurons in the Zebrafish olfactory bulb.	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	Protocols: EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	F8 mCherry	SAMEA10418611	Friedrich Miescher Institute for Biomedical Research	ENA first public:2021 12 01\|ENA last update:2021 12 01\|External Id:SAMEA10418611\|INSDC center alias:Friedrich Miescher Institute for Biomedical Research\|INSDC center name:Friedrich Miescher Institute for Biomedical Research\|INSDC first public:2021 12 01T00:23:59Z\|INSDC last update:2021 12 01T00:23:59Z\|INSDC status:public\|Submitter Id:E MTAB 11083:F8 mCherry\|age:9\|broker name:ArrayExpress\|cell type:GABAergic neuron\|common name:zebrafish\|developmental stage:adult\|fraction:mCherry+/GFP \|genotype:Tg[gad1b:Gal4 UAS:TVA mCherry]\|individual:pool 8\|organism part:olfactory bulb\|sample name:E MTAB 11083:F8 mCherry\|sex:mixed\|stimulus:injected with EnvA RV GFP\|strain:Ab x Tu x TL x WIK	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E MTAB 11083:F8 mCherry s	F8 mCherry s	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	Experimental Factor: fraction:mCherry+/GFP	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina HiSeq 2500	ERP132560	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	2874F23-1_210715_D00404_0538_BCD91CANXX_TCGACGTC-CGTCTAAT_L006_R1_001.fastq.gz	fastq	667760646.0	13093346.0	E MTAB 11083:2874F23 1 210715 D00404 0538 BCD91CANXX TCGACGTC CGTCTAAT L006	0:51 1:0	A:179948739;C:150541918;G:145038845;T:192184092;N:47052	51	0	179948739	150541918	145038845	192184092	47052	ERX6698606	ERS8070395	ERA6757553	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	1	0.71661		0.19774		0.74576		0.52117		51		B		usable mapping rate	illumina	hiseq_era	unknown	poly_a	nextera	sc	single_cell_plate	smartseq	Switzerland	2021-12-01	Adult	Adult	Brain	Nervous System
10242	10242	ERR7131166	ERX6698606	ERS8070395	ERP132560	PRJEB48218	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E-MTAB-11083	Transcriptome Analysis	To investigate the effects of rabies infection on neuronal gene expression we compared gene profiles of rabies infected and non infected GABAergic neurons in the Zebrafish olfactory bulb.	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	Protocols: EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	F8 mCherry	SAMEA10418611	Friedrich Miescher Institute for Biomedical Research	ENA first public:2021 12 01\|ENA last update:2021 12 01\|External Id:SAMEA10418611\|INSDC center alias:Friedrich Miescher Institute for Biomedical Research\|INSDC center name:Friedrich Miescher Institute for Biomedical Research\|INSDC first public:2021 12 01T00:23:59Z\|INSDC last update:2021 12 01T00:23:59Z\|INSDC status:public\|Submitter Id:E MTAB 11083:F8 mCherry\|age:9\|broker name:ArrayExpress\|cell type:GABAergic neuron\|common name:zebrafish\|developmental stage:adult\|fraction:mCherry+/GFP \|genotype:Tg[gad1b:Gal4 UAS:TVA mCherry]\|individual:pool 8\|organism part:olfactory bulb\|sample name:E MTAB 11083:F8 mCherry\|sex:mixed\|stimulus:injected with EnvA RV GFP\|strain:Ab x Tu x TL x WIK	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E MTAB 11083:F8 mCherry s	F8 mCherry s	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	Experimental Factor: fraction:mCherry+/GFP	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina HiSeq 2500	ERP132560	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	2874F23-2_210715_D00404_0538_BCD91CANXX_TCGACGTC-CGTCTAAT_L007_R1_001.fastq.gz	fastq	670970484.0	13156284.0	E MTAB 11083:2874F23 2 210715 D00404 0538 BCD91CANXX TCGACGTC CGTCTAAT L007	0:51 1:0	A:180906557;C:151329492;G:145816347;T:192872804;N:45284	51	0	180906557	151329492	145816347	192872804	45284	ERX6698606	ERS8070395	ERA6757553	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	1	0.71682		0.19902		0.74517		0.52618		51		B		usable mapping rate	illumina	hiseq_era	unknown	poly_a	nextera	sc	single_cell_plate	smartseq	Switzerland	2021-12-01	Adult	Adult	Brain	Nervous System
10243	10243	ERR7131163	ERX6698605	ERS8070394	ERP132560	PRJEB48218	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E-MTAB-11083	Transcriptome Analysis	To investigate the effects of rabies infection on neuronal gene expression we compared gene profiles of rabies infected and non infected GABAergic neurons in the Zebrafish olfactory bulb.	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	Protocols: EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	F7 Nega	SAMEA10418610	Friedrich Miescher Institute for Biomedical Research	ENA first public:2021 12 01\|ENA last update:2021 12 01\|External Id:SAMEA10418610\|INSDC center alias:Friedrich Miescher Institute for Biomedical Research\|INSDC center name:Friedrich Miescher Institute for Biomedical Research\|INSDC first public:2021 12 01T00:23:59Z\|INSDC last update:2021 12 01T00:23:59Z\|INSDC status:public\|Submitter Id:E MTAB 11083:F7 Nega\|age:9\|broker name:ArrayExpress\|cell type:GABAergic neuron\|common name:zebrafish\|developmental stage:adult\|fraction:mCherry /GFP \|genotype:Tg[gad1b:Gal4 UAS:TVA mCherry]\|individual:pool 7\|organism part:olfactory bulb\|sample name:E MTAB 11083:F7 Nega\|sex:mixed\|stimulus:injected with EnvA RV GFP\|strain:Ab x Tu x TL x WIK	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E MTAB 11083:F7 Nega s	F7 Nega s	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	Experimental Factor: fraction:mCherry /GFP	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina HiSeq 2500	ERP132560	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	2874F19-1_210715_D00404_0538_BCD91CANXX_TCGACGTC-GTAAGGAG_L006_R1_001.fastq.gz	fastq	652205238.0	12788338.0	E MTAB 11083:2874F19 1 210715 D00404 0538 BCD91CANXX TCGACGTC GTAAGGAG L006	0:51 1:0	A:173730405;C:149044598;G:145436777;T:183946928;N:46530	51	0	173730405	149044598	145436777	183946928	46530	ERX6698605	ERS8070394	ERA6757553	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	1	0.80595		0.17309		0.71003		0.53696		51		B		usable mapping rate	illumina	hiseq_era	unknown	poly_a	nextera	sc	single_cell_plate	smartseq	Switzerland	2021-12-01	Adult	Adult	Brain	Nervous System
10244	10244	ERR7131164	ERX6698605	ERS8070394	ERP132560	PRJEB48218	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E-MTAB-11083	Transcriptome Analysis	To investigate the effects of rabies infection on neuronal gene expression we compared gene profiles of rabies infected and non infected GABAergic neurons in the Zebrafish olfactory bulb.	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	Protocols: EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	F7 Nega	SAMEA10418610	Friedrich Miescher Institute for Biomedical Research	ENA first public:2021 12 01\|ENA last update:2021 12 01\|External Id:SAMEA10418610\|INSDC center alias:Friedrich Miescher Institute for Biomedical Research\|INSDC center name:Friedrich Miescher Institute for Biomedical Research\|INSDC first public:2021 12 01T00:23:59Z\|INSDC last update:2021 12 01T00:23:59Z\|INSDC status:public\|Submitter Id:E MTAB 11083:F7 Nega\|age:9\|broker name:ArrayExpress\|cell type:GABAergic neuron\|common name:zebrafish\|developmental stage:adult\|fraction:mCherry /GFP \|genotype:Tg[gad1b:Gal4 UAS:TVA mCherry]\|individual:pool 7\|organism part:olfactory bulb\|sample name:E MTAB 11083:F7 Nega\|sex:mixed\|stimulus:injected with EnvA RV GFP\|strain:Ab x Tu x TL x WIK	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E MTAB 11083:F7 Nega s	F7 Nega s	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	Experimental Factor: fraction:mCherry /GFP	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina HiSeq 2500	ERP132560	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	2874F19-2_210715_D00404_0538_BCD91CANXX_TCGACGTC-GTAAGGAG_L007_R1_001.fastq.gz	fastq	655593423.0	12854773.0	E MTAB 11083:2874F19 2 210715 D00404 0538 BCD91CANXX TCGACGTC GTAAGGAG L007	0:51 1:0	A:174715119;C:149844974;G:146250446;T:184737535;N:45349	51	0	174715119	149844974	146250446	184737535	45349	ERX6698605	ERS8070394	ERA6757553	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	1	0.80585		0.17497		0.71078		0.53767		51		B		usable mapping rate	illumina	hiseq_era	unknown	poly_a	nextera	sc	single_cell_plate	smartseq	Switzerland	2021-12-01	Adult	Adult	Brain	Nervous System
10245	10245	ERR7131161	ERX6698604	ERS8070393	ERP132560	PRJEB48218	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E-MTAB-11083	Transcriptome Analysis	To investigate the effects of rabies infection on neuronal gene expression we compared gene profiles of rabies infected and non infected GABAergic neurons in the Zebrafish olfactory bulb.	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	Protocols: EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	F7 mCherry GFP	SAMEA10418609	Friedrich Miescher Institute for Biomedical Research	ENA first public:2021 12 01\|ENA last update:2021 12 01\|External Id:SAMEA10418609\|INSDC center alias:Friedrich Miescher Institute for Biomedical Research\|INSDC center name:Friedrich Miescher Institute for Biomedical Research\|INSDC first public:2021 12 01T00:23:59Z\|INSDC last update:2021 12 01T00:23:59Z\|INSDC status:public\|Submitter Id:E MTAB 11083:F7 mCherry GFP\|age:9\|broker name:ArrayExpress\|cell type:GABAergic neuron\|common name:zebrafish\|developmental stage:adult\|fraction:mCherry+/GFP+\|genotype:Tg[gad1b:Gal4 UAS:TVA mCherry]\|individual:pool 7\|organism part:olfactory bulb\|sample name:E MTAB 11083:F7 mCherry GFP\|sex:mixed\|stimulus:injected with EnvA RV GFP\|strain:Ab x Tu x TL x WIK	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E MTAB 11083:F7 mCherry GFP s	F7 mCherry GFP s	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	Experimental Factor: fraction:mCherry+/GFP+	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina HiSeq 2500	ERP132560	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	2874F21-1_210715_D00404_0538_BCD91CANXX_TCGACGTC-AAGGAGTA_L006_R1_001.fastq.gz	fastq	661067151.0	12962101.0	E MTAB 11083:2874F21 1 210715 D00404 0538 BCD91CANXX TCGACGTC AAGGAGTA L006	0:51 1:0	A:168281419;C:157701209;G:153487197;T:181550252;N:47074	51	0	168281419	157701209	153487197	181550252	47074	ERX6698604	ERS8070393	ERA6757553	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	1	0.39074		0.11592		0.82615		0.5252		51		B		usable mapping rate	illumina	hiseq_era	unknown	poly_a	nextera	sc	single_cell_plate	smartseq	Switzerland	2021-12-01	Adult	Adult	Brain	Nervous System
10246	10246	ERR7131162	ERX6698604	ERS8070393	ERP132560	PRJEB48218	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E-MTAB-11083	Transcriptome Analysis	To investigate the effects of rabies infection on neuronal gene expression we compared gene profiles of rabies infected and non infected GABAergic neurons in the Zebrafish olfactory bulb.	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	Protocols: EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	F7 mCherry GFP	SAMEA10418609	Friedrich Miescher Institute for Biomedical Research	ENA first public:2021 12 01\|ENA last update:2021 12 01\|External Id:SAMEA10418609\|INSDC center alias:Friedrich Miescher Institute for Biomedical Research\|INSDC center name:Friedrich Miescher Institute for Biomedical Research\|INSDC first public:2021 12 01T00:23:59Z\|INSDC last update:2021 12 01T00:23:59Z\|INSDC status:public\|Submitter Id:E MTAB 11083:F7 mCherry GFP\|age:9\|broker name:ArrayExpress\|cell type:GABAergic neuron\|common name:zebrafish\|developmental stage:adult\|fraction:mCherry+/GFP+\|genotype:Tg[gad1b:Gal4 UAS:TVA mCherry]\|individual:pool 7\|organism part:olfactory bulb\|sample name:E MTAB 11083:F7 mCherry GFP\|sex:mixed\|stimulus:injected with EnvA RV GFP\|strain:Ab x Tu x TL x WIK	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E MTAB 11083:F7 mCherry GFP s	F7 mCherry GFP s	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	Experimental Factor: fraction:mCherry+/GFP+	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina HiSeq 2500	ERP132560	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	2874F21-2_210715_D00404_0538_BCD91CANXX_TCGACGTC-AAGGAGTA_L007_R1_001.fastq.gz	fastq	665709018.0	13053118.0	E MTAB 11083:2874F21 2 210715 D00404 0538 BCD91CANXX TCGACGTC AAGGAGTA L007	0:51 1:0	A:169539998;C:158884603;G:154624803;T:182614264;N:45350	51	0	169539998	158884603	154624803	182614264	45350	ERX6698604	ERS8070393	ERA6757553	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	1	0.38966		0.1152		0.8258		0.53305		51		B		usable mapping rate	illumina	hiseq_era	unknown	poly_a	nextera	sc	single_cell_plate	smartseq	Switzerland	2021-12-01	Adult	Adult	Brain	Nervous System
10247	10247	ERR7131159	ERX6698603	ERS8070392	ERP132560	PRJEB48218	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E-MTAB-11083	Transcriptome Analysis	To investigate the effects of rabies infection on neuronal gene expression we compared gene profiles of rabies infected and non infected GABAergic neurons in the Zebrafish olfactory bulb.	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	Protocols: EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	F7 mCherry	SAMEA10418608	Friedrich Miescher Institute for Biomedical Research	ENA first public:2021 12 01\|ENA last update:2021 12 01\|External Id:SAMEA10418608\|INSDC center alias:Friedrich Miescher Institute for Biomedical Research\|INSDC center name:Friedrich Miescher Institute for Biomedical Research\|INSDC first public:2021 12 01T00:23:59Z\|INSDC last update:2021 12 01T00:23:59Z\|INSDC status:public\|Submitter Id:E MTAB 11083:F7 mCherry\|age:9\|broker name:ArrayExpress\|cell type:GABAergic neuron\|common name:zebrafish\|developmental stage:adult\|fraction:mCherry+/GFP \|genotype:Tg[gad1b:Gal4 UAS:TVA mCherry]\|individual:pool 7\|organism part:olfactory bulb\|sample name:E MTAB 11083:F7 mCherry\|sex:mixed\|stimulus:injected with EnvA RV GFP\|strain:Ab x Tu x TL x WIK	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E MTAB 11083:F7 mCherry s	F7 mCherry s	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	Experimental Factor: fraction:mCherry+/GFP	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina HiSeq 2500	ERP132560	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	2874F20-1_210715_D00404_0538_BCD91CANXX_TCGACGTC-ACTGCATA_L006_R1_001.fastq.gz	fastq	657813402.0	12898302.0	E MTAB 11083:2874F20 1 210715 D00404 0538 BCD91CANXX TCGACGTC ACTGCATA L006	0:51 1:0	A:175873489;C:149476129;G:143987770;T:188429588;N:46426	51	0	175873489	149476129	143987770	188429588	46426	ERX6698603	ERS8070392	ERA6757553	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	1	0.70507		0.2048		0.75923		0.52828		51		B		usable mapping rate	illumina	hiseq_era	unknown	poly_a	nextera	sc	single_cell_plate	smartseq	Switzerland	2021-12-01	Adult	Adult	Brain	Nervous System
10248	10248	ERR7131160	ERX6698603	ERS8070392	ERP132560	PRJEB48218	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E-MTAB-11083	Transcriptome Analysis	To investigate the effects of rabies infection on neuronal gene expression we compared gene profiles of rabies infected and non infected GABAergic neurons in the Zebrafish olfactory bulb.	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	Protocols: EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	F7 mCherry	SAMEA10418608	Friedrich Miescher Institute for Biomedical Research	ENA first public:2021 12 01\|ENA last update:2021 12 01\|External Id:SAMEA10418608\|INSDC center alias:Friedrich Miescher Institute for Biomedical Research\|INSDC center name:Friedrich Miescher Institute for Biomedical Research\|INSDC first public:2021 12 01T00:23:59Z\|INSDC last update:2021 12 01T00:23:59Z\|INSDC status:public\|Submitter Id:E MTAB 11083:F7 mCherry\|age:9\|broker name:ArrayExpress\|cell type:GABAergic neuron\|common name:zebrafish\|developmental stage:adult\|fraction:mCherry+/GFP \|genotype:Tg[gad1b:Gal4 UAS:TVA mCherry]\|individual:pool 7\|organism part:olfactory bulb\|sample name:E MTAB 11083:F7 mCherry\|sex:mixed\|stimulus:injected with EnvA RV GFP\|strain:Ab x Tu x TL x WIK	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E MTAB 11083:F7 mCherry s	F7 mCherry s	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	Experimental Factor: fraction:mCherry+/GFP	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina HiSeq 2500	ERP132560	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	2874F20-2_210715_D00404_0538_BCD91CANXX_TCGACGTC-ACTGCATA_L007_R1_001.fastq.gz	fastq	660303426.0	12947126.0	E MTAB 11083:2874F20 2 210715 D00404 0538 BCD91CANXX TCGACGTC ACTGCATA L007	0:51 1:0	A:176607119;C:150065781;G:144613110;T:188972809;N:44607	51	0	176607119	150065781	144613110	188972809	44607	ERX6698603	ERS8070392	ERA6757553	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	1	0.70705		0.20314		0.75852		0.52949		51		B		usable mapping rate	illumina	hiseq_era	unknown	poly_a	nextera	sc	single_cell_plate	smartseq	Switzerland	2021-12-01	Adult	Adult	Brain	Nervous System
10249	10249	ERR7131157	ERX6698602	ERS8070391	ERP132560	PRJEB48218	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E-MTAB-11083	Transcriptome Analysis	To investigate the effects of rabies infection on neuronal gene expression we compared gene profiles of rabies infected and non infected GABAergic neurons in the Zebrafish olfactory bulb.	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	Protocols: EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	F6 Nega	SAMEA10418607	Friedrich Miescher Institute for Biomedical Research	ENA first public:2021 12 01\|ENA last update:2021 12 01\|External Id:SAMEA10418607\|INSDC center alias:Friedrich Miescher Institute for Biomedical Research\|INSDC center name:Friedrich Miescher Institute for Biomedical Research\|INSDC first public:2021 12 01T00:23:59Z\|INSDC last update:2021 12 01T00:23:59Z\|INSDC status:public\|Submitter Id:E MTAB 11083:F6 Nega\|age:9\|broker name:ArrayExpress\|cell type:GABAergic neuron\|common name:zebrafish\|developmental stage:adult\|fraction:mCherry /GFP \|genotype:Tg[gad1b:Gal4 UAS:TVA mCherry]\|individual:pool 6\|organism part:olfactory bulb\|sample name:E MTAB 11083:F6 Nega\|sex:mixed\|stimulus:injected with EnvA RV GFP\|strain:Ab x Tu x TL x WIK	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E MTAB 11083:F6 Nega s	F6 Nega s	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	Experimental Factor: fraction:mCherry /GFP	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina HiSeq 2500	ERP132560	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	2874F16-1_210715_D00404_0538_BCD91CANXX_TGCAGCTA-TCTCTCCG_L006_R1_001.fastq.gz	fastq	669627450.0	13129950.0	E MTAB 11083:2874F16 1 210715 D00404 0538 BCD91CANXX TGCAGCTA TCTCTCCG L006	0:51 1:0	A:177483937;C:154097051;G:148063012;T:189935690;N:47760	51	0	177483937	154097051	148063012	189935690	47760	ERX6698602	ERS8070391	ERA6757553	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	1	0.77183		0.16001		0.71467		0.53352		51		B		usable mapping rate	illumina	hiseq_era	unknown	poly_a	nextera	sc	single_cell_plate	smartseq	Switzerland	2021-12-01	Adult	Adult	Brain	Nervous System
10250	10250	ERR7131158	ERX6698602	ERS8070391	ERP132560	PRJEB48218	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E-MTAB-11083	Transcriptome Analysis	To investigate the effects of rabies infection on neuronal gene expression we compared gene profiles of rabies infected and non infected GABAergic neurons in the Zebrafish olfactory bulb.	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	Protocols: EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	F6 Nega	SAMEA10418607	Friedrich Miescher Institute for Biomedical Research	ENA first public:2021 12 01\|ENA last update:2021 12 01\|External Id:SAMEA10418607\|INSDC center alias:Friedrich Miescher Institute for Biomedical Research\|INSDC center name:Friedrich Miescher Institute for Biomedical Research\|INSDC first public:2021 12 01T00:23:59Z\|INSDC last update:2021 12 01T00:23:59Z\|INSDC status:public\|Submitter Id:E MTAB 11083:F6 Nega\|age:9\|broker name:ArrayExpress\|cell type:GABAergic neuron\|common name:zebrafish\|developmental stage:adult\|fraction:mCherry /GFP \|genotype:Tg[gad1b:Gal4 UAS:TVA mCherry]\|individual:pool 6\|organism part:olfactory bulb\|sample name:E MTAB 11083:F6 Nega\|sex:mixed\|stimulus:injected with EnvA RV GFP\|strain:Ab x Tu x TL x WIK	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E MTAB 11083:F6 Nega s	F6 Nega s	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	Experimental Factor: fraction:mCherry /GFP	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina HiSeq 2500	ERP132560	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	2874F16-2_210715_D00404_0538_BCD91CANXX_TGCAGCTA-TCTCTCCG_L007_R1_001.fastq.gz	fastq	671615073.0	13168923.0	E MTAB 11083:2874F16 2 210715 D00404 0538 BCD91CANXX TGCAGCTA TCTCTCCG L007	0:51 1:0	A:178109157;C:154619024;G:148595207;T:190246469;N:45216	51	0	178109157	154619024	148595207	190246469	45216	ERX6698602	ERS8070391	ERA6757553	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	1	0.77284		0.15963		0.71569		0.53038		51		B		usable mapping rate	illumina	hiseq_era	unknown	poly_a	nextera	sc	single_cell_plate	smartseq	Switzerland	2021-12-01	Adult	Adult	Brain	Nervous System
10251	10251	ERR7131155	ERX6698601	ERS8070390	ERP132560	PRJEB48218	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E-MTAB-11083	Transcriptome Analysis	To investigate the effects of rabies infection on neuronal gene expression we compared gene profiles of rabies infected and non infected GABAergic neurons in the Zebrafish olfactory bulb.	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	Protocols: EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	F6 mCherry GFP	SAMEA10418606	Friedrich Miescher Institute for Biomedical Research	ENA first public:2021 12 01\|ENA last update:2021 12 01\|External Id:SAMEA10418606\|INSDC center alias:Friedrich Miescher Institute for Biomedical Research\|INSDC center name:Friedrich Miescher Institute for Biomedical Research\|INSDC first public:2021 12 01T00:23:59Z\|INSDC last update:2021 12 01T00:23:59Z\|INSDC status:public\|Submitter Id:E MTAB 11083:F6 mCherry GFP\|age:9\|broker name:ArrayExpress\|cell type:GABAergic neuron\|common name:zebrafish\|developmental stage:adult\|fraction:mCherry+/GFP+\|genotype:Tg[gad1b:Gal4 UAS:TVA mCherry]\|individual:pool 6\|organism part:olfactory bulb\|sample name:E MTAB 11083:F6 mCherry GFP\|sex:mixed\|stimulus:injected with EnvA RV GFP\|strain:Ab x Tu x TL x WIK	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E MTAB 11083:F6 mCherry GFP s	F6 mCherry GFP s	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	Experimental Factor: fraction:mCherry+/GFP+	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina HiSeq 2500	ERP132560	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	2874F18-1_210715_D00404_0538_BCD91CANXX_TCGACGTC-TATCCTCT_L006_R1_001.fastq.gz	fastq	667663542.0	13091442.0	E MTAB 11083:2874F18 1 210715 D00404 0538 BCD91CANXX TCGACGTC TATCCTCT L006	0:51 1:0	A:177646483;C:152747528;G:146388226;T:190833951;N:47354	51	0	177646483	152747528	146388226	190833951	47354	ERX6698601	ERS8070390	ERA6757553	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	1	0.67964		0.18123		0.77193		0.53313		51		B		usable mapping rate	illumina	hiseq_era	unknown	poly_a	nextera	sc	single_cell_plate	smartseq	Switzerland	2021-12-01	Adult	Adult	Brain	Nervous System
10252	10252	ERR7131156	ERX6698601	ERS8070390	ERP132560	PRJEB48218	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E-MTAB-11083	Transcriptome Analysis	To investigate the effects of rabies infection on neuronal gene expression we compared gene profiles of rabies infected and non infected GABAergic neurons in the Zebrafish olfactory bulb.	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	Protocols: EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	F6 mCherry GFP	SAMEA10418606	Friedrich Miescher Institute for Biomedical Research	ENA first public:2021 12 01\|ENA last update:2021 12 01\|External Id:SAMEA10418606\|INSDC center alias:Friedrich Miescher Institute for Biomedical Research\|INSDC center name:Friedrich Miescher Institute for Biomedical Research\|INSDC first public:2021 12 01T00:23:59Z\|INSDC last update:2021 12 01T00:23:59Z\|INSDC status:public\|Submitter Id:E MTAB 11083:F6 mCherry GFP\|age:9\|broker name:ArrayExpress\|cell type:GABAergic neuron\|common name:zebrafish\|developmental stage:adult\|fraction:mCherry+/GFP+\|genotype:Tg[gad1b:Gal4 UAS:TVA mCherry]\|individual:pool 6\|organism part:olfactory bulb\|sample name:E MTAB 11083:F6 mCherry GFP\|sex:mixed\|stimulus:injected with EnvA RV GFP\|strain:Ab x Tu x TL x WIK	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E MTAB 11083:F6 mCherry GFP s	F6 mCherry GFP s	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	Experimental Factor: fraction:mCherry+/GFP+	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina HiSeq 2500	ERP132560	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	2874F18-2_210715_D00404_0538_BCD91CANXX_TCGACGTC-TATCCTCT_L007_R1_001.fastq.gz	fastq	670170141.0	13140591.0	E MTAB 11083:2874F18 2 210715 D00404 0538 BCD91CANXX TCGACGTC TATCCTCT L007	0:51 1:0	A:178425395;C:153363855;G:147033779;T:191300976;N:46136	51	0	178425395	153363855	147033779	191300976	46136	ERX6698601	ERS8070390	ERA6757553	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	1	0.67922		0.18101		0.77141		0.53601		51		B		usable mapping rate	illumina	hiseq_era	unknown	poly_a	nextera	sc	single_cell_plate	smartseq	Switzerland	2021-12-01	Adult	Adult	Brain	Nervous System
10253	10253	ERR7131153	ERX6698600	ERS8070389	ERP132560	PRJEB48218	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E-MTAB-11083	Transcriptome Analysis	To investigate the effects of rabies infection on neuronal gene expression we compared gene profiles of rabies infected and non infected GABAergic neurons in the Zebrafish olfactory bulb.	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	Protocols: EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	F6 mCherry	SAMEA10418605	Friedrich Miescher Institute for Biomedical Research	ENA first public:2021 12 01\|ENA last update:2021 12 01\|External Id:SAMEA10418605\|INSDC center alias:Friedrich Miescher Institute for Biomedical Research\|INSDC center name:Friedrich Miescher Institute for Biomedical Research\|INSDC first public:2021 12 01T00:23:59Z\|INSDC last update:2021 12 01T00:23:59Z\|INSDC status:public\|Submitter Id:E MTAB 11083:F6 mCherry\|age:9\|broker name:ArrayExpress\|cell type:GABAergic neuron\|common name:zebrafish\|developmental stage:adult\|fraction:mCherry+/GFP \|genotype:Tg[gad1b:Gal4 UAS:TVA mCherry]\|individual:pool 6\|organism part:olfactory bulb\|sample name:E MTAB 11083:F6 mCherry\|sex:mixed\|stimulus:injected with EnvA RV GFP\|strain:Ab x Tu x TL x WIK	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E MTAB 11083:F6 mCherry s	F6 mCherry s	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	Experimental Factor: fraction:mCherry+/GFP	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina HiSeq 2500	ERP132560	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	2874F17-1_210715_D00404_0538_BCD91CANXX_TCGACGTC-CTCTCTAT_L006_R1_001.fastq.gz	fastq	677617008.0	13286608.0	E MTAB 11083:2874F17 1 210715 D00404 0538 BCD91CANXX TCGACGTC CTCTCTAT L006	0:51 1:0	A:181785899;C:152797687;G:147070676;T:195914808;N:47938	51	0	181785899	152797687	147070676	195914808	47938	ERX6698600	ERS8070389	ERA6757553	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	1	0.68298		0.1953		0.76292		0.5395		51		B		usable mapping rate	illumina	hiseq_era	unknown	poly_a	nextera	sc	single_cell_plate	smartseq	Switzerland	2021-12-01	Adult	Adult	Brain	Nervous System
10254	10254	ERR7131154	ERX6698600	ERS8070389	ERP132560	PRJEB48218	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E-MTAB-11083	Transcriptome Analysis	To investigate the effects of rabies infection on neuronal gene expression we compared gene profiles of rabies infected and non infected GABAergic neurons in the Zebrafish olfactory bulb.	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	Protocols: EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	F6 mCherry	SAMEA10418605	Friedrich Miescher Institute for Biomedical Research	ENA first public:2021 12 01\|ENA last update:2021 12 01\|External Id:SAMEA10418605\|INSDC center alias:Friedrich Miescher Institute for Biomedical Research\|INSDC center name:Friedrich Miescher Institute for Biomedical Research\|INSDC first public:2021 12 01T00:23:59Z\|INSDC last update:2021 12 01T00:23:59Z\|INSDC status:public\|Submitter Id:E MTAB 11083:F6 mCherry\|age:9\|broker name:ArrayExpress\|cell type:GABAergic neuron\|common name:zebrafish\|developmental stage:adult\|fraction:mCherry+/GFP \|genotype:Tg[gad1b:Gal4 UAS:TVA mCherry]\|individual:pool 6\|organism part:olfactory bulb\|sample name:E MTAB 11083:F6 mCherry\|sex:mixed\|stimulus:injected with EnvA RV GFP\|strain:Ab x Tu x TL x WIK	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E MTAB 11083:F6 mCherry s	F6 mCherry s	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	Experimental Factor: fraction:mCherry+/GFP	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina HiSeq 2500	ERP132560	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	2874F17-2_210715_D00404_0538_BCD91CANXX_TCGACGTC-CTCTCTAT_L007_R1_001.fastq.gz	fastq	679922973.0	13331823.0	E MTAB 11083:2874F17 2 210715 D00404 0538 BCD91CANXX TCGACGTC CTCTCTAT L007	0:51 1:0	A:182567819;C:153380607;G:147589890;T:196337722;N:46935	51	0	182567819	153380607	147589890	196337722	46935	ERX6698600	ERS8070389	ERA6757553	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	1	0.68391		0.19726		0.76299		0.54099		51		B		usable mapping rate	illumina	hiseq_era	unknown	poly_a	nextera	sc	single_cell_plate	smartseq	Switzerland	2021-12-01	Adult	Adult	Brain	Nervous System
10255	10255	ERR7131151	ERX6698599	ERS8070388	ERP132560	PRJEB48218	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E-MTAB-11083	Transcriptome Analysis	To investigate the effects of rabies infection on neuronal gene expression we compared gene profiles of rabies infected and non infected GABAergic neurons in the Zebrafish olfactory bulb.	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	Protocols: EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	F5 Nega	SAMEA10418604	Friedrich Miescher Institute for Biomedical Research	ENA first public:2021 12 01\|ENA last update:2021 12 01\|External Id:SAMEA10418604\|INSDC center alias:Friedrich Miescher Institute for Biomedical Research\|INSDC center name:Friedrich Miescher Institute for Biomedical Research\|INSDC first public:2021 12 01T00:23:59Z\|INSDC last update:2021 12 01T00:23:59Z\|INSDC status:public\|Submitter Id:E MTAB 11083:F5 Nega\|age:9\|broker name:ArrayExpress\|cell type:GABAergic neuron\|common name:zebrafish\|developmental stage:adult\|fraction:mCherry /GFP \|genotype:Tg[gad1b:Gal4 UAS:TVA mCherry]\|individual:pool 5\|organism part:olfactory bulb\|sample name:E MTAB 11083:F5 Nega\|sex:mixed\|stimulus:injected with EnvA RV GFP\|strain:Ab x Tu x TL x WIK	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E MTAB 11083:F5 Nega s	F5 Nega s	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	Experimental Factor: fraction:mCherry /GFP	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina HiSeq 2500	ERP132560	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	2874F13-1_210715_D00404_0538_BCD91CANXX_TGCAGCTA-AAGGAGTA_L006_R1_001.fastq.gz	fastq	620316315.0	12163065.0	E MTAB 11083:2874F13 1 210715 D00404 0538 BCD91CANXX TGCAGCTA AAGGAGTA L006	0:51 1:0	A:165967355;C:141072216;G:136931219;T:176301963;N:43562	51	0	165967355	141072216	136931219	176301963	43562	ERX6698599	ERS8070388	ERA6757553	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	1	0.78924		0.17457		0.71934		0.53563		51		B		usable mapping rate	illumina	hiseq_era	unknown	poly_a	nextera	sc	single_cell_plate	smartseq	Switzerland	2021-12-01	Adult	Adult	Brain	Nervous System
10256	10256	ERR7131152	ERX6698599	ERS8070388	ERP132560	PRJEB48218	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E-MTAB-11083	Transcriptome Analysis	To investigate the effects of rabies infection on neuronal gene expression we compared gene profiles of rabies infected and non infected GABAergic neurons in the Zebrafish olfactory bulb.	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	Protocols: EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	F5 Nega	SAMEA10418604	Friedrich Miescher Institute for Biomedical Research	ENA first public:2021 12 01\|ENA last update:2021 12 01\|External Id:SAMEA10418604\|INSDC center alias:Friedrich Miescher Institute for Biomedical Research\|INSDC center name:Friedrich Miescher Institute for Biomedical Research\|INSDC first public:2021 12 01T00:23:59Z\|INSDC last update:2021 12 01T00:23:59Z\|INSDC status:public\|Submitter Id:E MTAB 11083:F5 Nega\|age:9\|broker name:ArrayExpress\|cell type:GABAergic neuron\|common name:zebrafish\|developmental stage:adult\|fraction:mCherry /GFP \|genotype:Tg[gad1b:Gal4 UAS:TVA mCherry]\|individual:pool 5\|organism part:olfactory bulb\|sample name:E MTAB 11083:F5 Nega\|sex:mixed\|stimulus:injected with EnvA RV GFP\|strain:Ab x Tu x TL x WIK	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E MTAB 11083:F5 Nega s	F5 Nega s	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	Experimental Factor: fraction:mCherry /GFP	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina HiSeq 2500	ERP132560	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	2874F13-2_210715_D00404_0538_BCD91CANXX_TGCAGCTA-AAGGAGTA_L007_R1_001.fastq.gz	fastq	623905338.0	12233438.0	E MTAB 11083:2874F13 2 210715 D00404 0538 BCD91CANXX TGCAGCTA AAGGAGTA L007	0:51 1:0	A:166996253;C:141937637;G:137825206;T:177103504;N:42738	51	0	166996253	141937637	137825206	177103504	42738	ERX6698599	ERS8070388	ERA6757553	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	1	0.78975		0.17387		0.72153		0.54149		51		B		usable mapping rate	illumina	hiseq_era	unknown	poly_a	nextera	sc	single_cell_plate	smartseq	Switzerland	2021-12-01	Adult	Adult	Brain	Nervous System
10257	10257	ERR7131149	ERX6698598	ERS8070387	ERP132560	PRJEB48218	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E-MTAB-11083	Transcriptome Analysis	To investigate the effects of rabies infection on neuronal gene expression we compared gene profiles of rabies infected and non infected GABAergic neurons in the Zebrafish olfactory bulb.	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	Protocols: EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	F5 mCherry GFP	SAMEA10418603	Friedrich Miescher Institute for Biomedical Research	ENA first public:2021 12 01\|ENA last update:2021 12 01\|External Id:SAMEA10418603\|INSDC center alias:Friedrich Miescher Institute for Biomedical Research\|INSDC center name:Friedrich Miescher Institute for Biomedical Research\|INSDC first public:2021 12 01T00:23:59Z\|INSDC last update:2021 12 01T00:23:59Z\|INSDC status:public\|Submitter Id:E MTAB 11083:F5 mCherry GFP\|age:9\|broker name:ArrayExpress\|cell type:GABAergic neuron\|common name:zebrafish\|developmental stage:adult\|fraction:mCherry+/GFP+\|genotype:Tg[gad1b:Gal4 UAS:TVA mCherry]\|individual:pool 5\|organism part:olfactory bulb\|sample name:E MTAB 11083:F5 mCherry GFP\|sex:mixed\|stimulus:injected with EnvA RV GFP\|strain:Ab x Tu x TL x WIK	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E MTAB 11083:F5 mCherry GFP s	F5 mCherry GFP s	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	Experimental Factor: fraction:mCherry+/GFP+	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina HiSeq 2500	ERP132560	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	2874F15-1_210715_D00404_0538_BCD91CANXX_TGCAGCTA-CGTCTAAT_L006_R1_001.fastq.gz	fastq	670154841.0	13140291.0	E MTAB 11083:2874F15 1 210715 D00404 0538 BCD91CANXX TGCAGCTA CGTCTAAT L006	0:51 1:0	A:182457480;C:149175456;G:144548173;T:193927470;N:46262	51	0	182457480	149175456	144548173	193927470	46262	ERX6698598	ERS8070387	ERA6757553	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	1	0.71875		0.18671		0.76047		0.52398		51		B		usable mapping rate	illumina	hiseq_era	unknown	poly_a	nextera	sc	single_cell_plate	smartseq	Switzerland	2021-12-01	Adult	Adult	Brain	Nervous System
10258	10258	ERR7131150	ERX6698598	ERS8070387	ERP132560	PRJEB48218	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E-MTAB-11083	Transcriptome Analysis	To investigate the effects of rabies infection on neuronal gene expression we compared gene profiles of rabies infected and non infected GABAergic neurons in the Zebrafish olfactory bulb.	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	Protocols: EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	F5 mCherry GFP	SAMEA10418603	Friedrich Miescher Institute for Biomedical Research	ENA first public:2021 12 01\|ENA last update:2021 12 01\|External Id:SAMEA10418603\|INSDC center alias:Friedrich Miescher Institute for Biomedical Research\|INSDC center name:Friedrich Miescher Institute for Biomedical Research\|INSDC first public:2021 12 01T00:23:59Z\|INSDC last update:2021 12 01T00:23:59Z\|INSDC status:public\|Submitter Id:E MTAB 11083:F5 mCherry GFP\|age:9\|broker name:ArrayExpress\|cell type:GABAergic neuron\|common name:zebrafish\|developmental stage:adult\|fraction:mCherry+/GFP+\|genotype:Tg[gad1b:Gal4 UAS:TVA mCherry]\|individual:pool 5\|organism part:olfactory bulb\|sample name:E MTAB 11083:F5 mCherry GFP\|sex:mixed\|stimulus:injected with EnvA RV GFP\|strain:Ab x Tu x TL x WIK	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E MTAB 11083:F5 mCherry GFP s	F5 mCherry GFP s	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	Experimental Factor: fraction:mCherry+/GFP+	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina HiSeq 2500	ERP132560	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	2874F15-2_210715_D00404_0538_BCD91CANXX_TGCAGCTA-CGTCTAAT_L007_R1_001.fastq.gz	fastq	674202048.0	13219648.0	E MTAB 11083:2874F15 2 210715 D00404 0538 BCD91CANXX TGCAGCTA CGTCTAAT L007	0:51 1:0	A:183639511;C:150168226;G:145502071;T:194847755;N:44485	51	0	183639511	150168226	145502071	194847755	44485	ERX6698598	ERS8070387	ERA6757553	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	1	0.72111		0.18813		0.76378		0.5258		51		B		usable mapping rate	illumina	hiseq_era	unknown	poly_a	nextera	sc	single_cell_plate	smartseq	Switzerland	2021-12-01	Adult	Adult	Brain	Nervous System
10259	10259	ERR7131147	ERX6698597	ERS8070386	ERP132560	PRJEB48218	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E-MTAB-11083	Transcriptome Analysis	To investigate the effects of rabies infection on neuronal gene expression we compared gene profiles of rabies infected and non infected GABAergic neurons in the Zebrafish olfactory bulb.	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	Protocols: EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	F5 mCherry	SAMEA10418602	Friedrich Miescher Institute for Biomedical Research	ENA first public:2021 12 01\|ENA last update:2021 12 01\|External Id:SAMEA10418602\|INSDC center alias:Friedrich Miescher Institute for Biomedical Research\|INSDC center name:Friedrich Miescher Institute for Biomedical Research\|INSDC first public:2021 12 01T00:23:59Z\|INSDC last update:2021 12 01T00:23:59Z\|INSDC status:public\|Submitter Id:E MTAB 11083:F5 mCherry\|age:9\|broker name:ArrayExpress\|cell type:GABAergic neuron\|common name:zebrafish\|developmental stage:adult\|fraction:mCherry+/GFP \|genotype:Tg[gad1b:Gal4 UAS:TVA mCherry]\|individual:pool 5\|organism part:olfactory bulb\|sample name:E MTAB 11083:F5 mCherry\|sex:mixed\|stimulus:injected with EnvA RV GFP\|strain:Ab x Tu x TL x WIK	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E MTAB 11083:F5 mCherry s	F5 mCherry s	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	Experimental Factor: fraction:mCherry+/GFP	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina HiSeq 2500	ERP132560	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	2874F14-1_210715_D00404_0538_BCD91CANXX_TGCAGCTA-CTAAGCCT_L006_R1_001.fastq.gz	fastq	615458259.0	12067809.0	E MTAB 11083:2874F14 1 210715 D00404 0538 BCD91CANXX TGCAGCTA CTAAGCCT L006	0:51 1:0	A:165108582;C:139178883;G:134070672;T:177059757;N:40365	51	0	165108582	139178883	134070672	177059757	40365	ERX6698597	ERS8070386	ERA6757553	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	1	0.69017		0.1977		0.77193		0.53352		51		B		usable mapping rate	illumina	hiseq_era	unknown	poly_a	nextera	sc	single_cell_plate	smartseq	Switzerland	2021-12-01	Adult	Adult	Brain	Nervous System
10260	10260	ERR7131148	ERX6698597	ERS8070386	ERP132560	PRJEB48218	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E-MTAB-11083	Transcriptome Analysis	To investigate the effects of rabies infection on neuronal gene expression we compared gene profiles of rabies infected and non infected GABAergic neurons in the Zebrafish olfactory bulb.	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	Protocols: EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	F5 mCherry	SAMEA10418602	Friedrich Miescher Institute for Biomedical Research	ENA first public:2021 12 01\|ENA last update:2021 12 01\|External Id:SAMEA10418602\|INSDC center alias:Friedrich Miescher Institute for Biomedical Research\|INSDC center name:Friedrich Miescher Institute for Biomedical Research\|INSDC first public:2021 12 01T00:23:59Z\|INSDC last update:2021 12 01T00:23:59Z\|INSDC status:public\|Submitter Id:E MTAB 11083:F5 mCherry\|age:9\|broker name:ArrayExpress\|cell type:GABAergic neuron\|common name:zebrafish\|developmental stage:adult\|fraction:mCherry+/GFP \|genotype:Tg[gad1b:Gal4 UAS:TVA mCherry]\|individual:pool 5\|organism part:olfactory bulb\|sample name:E MTAB 11083:F5 mCherry\|sex:mixed\|stimulus:injected with EnvA RV GFP\|strain:Ab x Tu x TL x WIK	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E MTAB 11083:F5 mCherry s	F5 mCherry s	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	Experimental Factor: fraction:mCherry+/GFP	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina HiSeq 2500	ERP132560	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	2874F14-2_210715_D00404_0538_BCD91CANXX_TGCAGCTA-CTAAGCCT_L007_R1_001.fastq.gz	fastq	619061613.0	12138463.0	E MTAB 11083:2874F14 2 210715 D00404 0538 BCD91CANXX TGCAGCTA CTAAGCCT L007	0:51 1:0	A:166167516;C:140058774;G:134972850;T:177822733;N:39740	51	0	166167516	140058774	134972850	177822733	39740	ERX6698597	ERS8070386	ERA6757553	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	1	0.69118		0.20019		0.7707		0.52174		51		B		usable mapping rate	illumina	hiseq_era	unknown	poly_a	nextera	sc	single_cell_plate	smartseq	Switzerland	2021-12-01	Adult	Adult	Brain	Nervous System
10261	10261	ERR7131145	ERX6698596	ERS8070385	ERP132560	PRJEB48218	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E-MTAB-11083	Transcriptome Analysis	To investigate the effects of rabies infection on neuronal gene expression we compared gene profiles of rabies infected and non infected GABAergic neurons in the Zebrafish olfactory bulb.	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	Protocols: EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	F4 Nega	SAMEA10418601	Friedrich Miescher Institute for Biomedical Research	ENA first public:2021 12 01\|ENA last update:2021 12 01\|External Id:SAMEA10418601\|INSDC center alias:Friedrich Miescher Institute for Biomedical Research\|INSDC center name:Friedrich Miescher Institute for Biomedical Research\|INSDC first public:2021 12 01T00:23:59Z\|INSDC last update:2021 12 01T00:23:59Z\|INSDC status:public\|Submitter Id:E MTAB 11083:F4 Nega\|age:9\|broker name:ArrayExpress\|cell type:GABAergic neuron\|common name:zebrafish\|developmental stage:adult\|fraction:mCherry /GFP \|genotype:Tg[gad1b:Gal4 UAS:TVA mCherry]\|individual:pool 4\|organism part:olfactory bulb\|sample name:E MTAB 11083:F4 Nega\|sex:mixed\|stimulus:injected with EnvA RV GFP\|strain:Ab x Tu x TL x WIK	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E MTAB 11083:F4 Nega s	F4 Nega s	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	Experimental Factor: fraction:mCherry /GFP	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina HiSeq 2500	ERP132560	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	2874F10-1_210715_D00404_0538_BCD91CANXX_TGCAGCTA-TATCCTCT_L006_R1_001.fastq.gz	fastq	652536687.0	12794837.0	E MTAB 11083:2874F10 1 210715 D00404 0538 BCD91CANXX TGCAGCTA TATCCTCT L006	0:51 1:0	A:178033231;C:144661707;G:139876661;T:189921085;N:44003	51	0	178033231	144661707	139876661	189921085	44003	ERX6698596	ERS8070385	ERA6757553	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	1	0.76201		0.2508		0.71299		0.53379		51		B		usable mapping rate	illumina	hiseq_era	unknown	poly_a	nextera	sc	single_cell_plate	smartseq	Switzerland	2021-12-01	Adult	Adult	Brain	Nervous System
10262	10262	ERR7131146	ERX6698596	ERS8070385	ERP132560	PRJEB48218	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E-MTAB-11083	Transcriptome Analysis	To investigate the effects of rabies infection on neuronal gene expression we compared gene profiles of rabies infected and non infected GABAergic neurons in the Zebrafish olfactory bulb.	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	Protocols: EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	F4 Nega	SAMEA10418601	Friedrich Miescher Institute for Biomedical Research	ENA first public:2021 12 01\|ENA last update:2021 12 01\|External Id:SAMEA10418601\|INSDC center alias:Friedrich Miescher Institute for Biomedical Research\|INSDC center name:Friedrich Miescher Institute for Biomedical Research\|INSDC first public:2021 12 01T00:23:59Z\|INSDC last update:2021 12 01T00:23:59Z\|INSDC status:public\|Submitter Id:E MTAB 11083:F4 Nega\|age:9\|broker name:ArrayExpress\|cell type:GABAergic neuron\|common name:zebrafish\|developmental stage:adult\|fraction:mCherry /GFP \|genotype:Tg[gad1b:Gal4 UAS:TVA mCherry]\|individual:pool 4\|organism part:olfactory bulb\|sample name:E MTAB 11083:F4 Nega\|sex:mixed\|stimulus:injected with EnvA RV GFP\|strain:Ab x Tu x TL x WIK	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E MTAB 11083:F4 Nega s	F4 Nega s	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	Experimental Factor: fraction:mCherry /GFP	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina HiSeq 2500	ERP132560	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	2874F10-2_210715_D00404_0538_BCD91CANXX_TGCAGCTA-TATCCTCT_L007_R1_001.fastq.gz	fastq	655278957.0	12848607.0	E MTAB 11083:2874F10 2 210715 D00404 0538 BCD91CANXX TGCAGCTA TATCCTCT L007	0:51 1:0	A:178938002;C:145332613;G:140527756;T:190437189;N:43397	51	0	178938002	145332613	140527756	190437189	43397	ERX6698596	ERS8070385	ERA6757553	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	1	0.76188		0.25356		0.71344		0.53081		51		B		usable mapping rate	illumina	hiseq_era	unknown	poly_a	nextera	sc	single_cell_plate	smartseq	Switzerland	2021-12-01	Adult	Adult	Brain	Nervous System
10263	10263	ERR7131143	ERX6698595	ERS8070384	ERP132560	PRJEB48218	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E-MTAB-11083	Transcriptome Analysis	To investigate the effects of rabies infection on neuronal gene expression we compared gene profiles of rabies infected and non infected GABAergic neurons in the Zebrafish olfactory bulb.	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	Protocols: EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	F4 mCherry GFP	SAMEA10418600	Friedrich Miescher Institute for Biomedical Research	ENA first public:2021 12 01\|ENA last update:2021 12 01\|External Id:SAMEA10418600\|INSDC center alias:Friedrich Miescher Institute for Biomedical Research\|INSDC center name:Friedrich Miescher Institute for Biomedical Research\|INSDC first public:2021 12 01T00:23:59Z\|INSDC last update:2021 12 01T00:23:59Z\|INSDC status:public\|Submitter Id:E MTAB 11083:F4 mCherry GFP\|age:9\|broker name:ArrayExpress\|cell type:GABAergic neuron\|common name:zebrafish\|developmental stage:adult\|fraction:mCherry+/GFP+\|genotype:Tg[gad1b:Gal4 UAS:TVA mCherry]\|individual:pool 4\|organism part:olfactory bulb\|sample name:E MTAB 11083:F4 mCherry GFP\|sex:mixed\|stimulus:injected with EnvA RV GFP\|strain:Ab x Tu x TL x WIK	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E MTAB 11083:F4 mCherry GFP s	F4 mCherry GFP s	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	Experimental Factor: fraction:mCherry+/GFP+	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina HiSeq 2500	ERP132560	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	2874F12-1_210715_D00404_0538_BCD91CANXX_TGCAGCTA-ACTGCATA_L006_R1_001.fastq.gz	fastq	297921855.0	5841605.0	E MTAB 11083:2874F12 1 210715 D00404 0538 BCD91CANXX TGCAGCTA ACTGCATA L006	0:51 1:0	A:82400724;C:65517496;G:64603058;T:85384480;N:16097	51	0	82400724	65517496	64603058	85384480	16097	ERX6698595	ERS8070384	ERA6757553	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	1	0.72496		0.20794		0.81223		0.52529		51		B		usable mapping rate	illumina	hiseq_era	unknown	poly_a	nextera	sc	single_cell_plate	smartseq	Switzerland	2021-12-01	Adult	Adult	Brain	Nervous System
10264	10264	ERR7131144	ERX6698595	ERS8070384	ERP132560	PRJEB48218	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E-MTAB-11083	Transcriptome Analysis	To investigate the effects of rabies infection on neuronal gene expression we compared gene profiles of rabies infected and non infected GABAergic neurons in the Zebrafish olfactory bulb.	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	Protocols: EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	F4 mCherry GFP	SAMEA10418600	Friedrich Miescher Institute for Biomedical Research	ENA first public:2021 12 01\|ENA last update:2021 12 01\|External Id:SAMEA10418600\|INSDC center alias:Friedrich Miescher Institute for Biomedical Research\|INSDC center name:Friedrich Miescher Institute for Biomedical Research\|INSDC first public:2021 12 01T00:23:59Z\|INSDC last update:2021 12 01T00:23:59Z\|INSDC status:public\|Submitter Id:E MTAB 11083:F4 mCherry GFP\|age:9\|broker name:ArrayExpress\|cell type:GABAergic neuron\|common name:zebrafish\|developmental stage:adult\|fraction:mCherry+/GFP+\|genotype:Tg[gad1b:Gal4 UAS:TVA mCherry]\|individual:pool 4\|organism part:olfactory bulb\|sample name:E MTAB 11083:F4 mCherry GFP\|sex:mixed\|stimulus:injected with EnvA RV GFP\|strain:Ab x Tu x TL x WIK	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E MTAB 11083:F4 mCherry GFP s	F4 mCherry GFP s	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	Experimental Factor: fraction:mCherry+/GFP+	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina HiSeq 2500	ERP132560	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	2874F12-2_210715_D00404_0538_BCD91CANXX_TGCAGCTA-ACTGCATA_L007_R1_001.fastq.gz	fastq	309412971.0	6066921.0	E MTAB 11083:2874F12 2 210715 D00404 0538 BCD91CANXX TGCAGCTA ACTGCATA L007	0:51 1:0	A:85531271;C:68164437;G:67129209;T:88573210;N:14844	51	0	85531271	68164437	67129209	88573210	14844	ERX6698595	ERS8070384	ERA6757553	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	1	0.7245		0.20724		0.80468		0.52791		51		B		usable mapping rate	illumina	hiseq_era	unknown	poly_a	nextera	sc	single_cell_plate	smartseq	Switzerland	2021-12-01	Adult	Adult	Brain	Nervous System
10265	10265	ERR7131141	ERX6698594	ERS8070383	ERP132560	PRJEB48218	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E-MTAB-11083	Transcriptome Analysis	To investigate the effects of rabies infection on neuronal gene expression we compared gene profiles of rabies infected and non infected GABAergic neurons in the Zebrafish olfactory bulb.	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	Protocols: EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	F4 mCherry	SAMEA10418599	Friedrich Miescher Institute for Biomedical Research	ENA first public:2021 12 01\|ENA last update:2021 12 01\|External Id:SAMEA10418599\|INSDC center alias:Friedrich Miescher Institute for Biomedical Research\|INSDC center name:Friedrich Miescher Institute for Biomedical Research\|INSDC first public:2021 12 01T00:23:59Z\|INSDC last update:2021 12 01T00:23:59Z\|INSDC status:public\|Submitter Id:E MTAB 11083:F4 mCherry\|age:9\|broker name:ArrayExpress\|cell type:GABAergic neuron\|common name:zebrafish\|developmental stage:adult\|fraction:mCherry+/GFP \|genotype:Tg[gad1b:Gal4 UAS:TVA mCherry]\|individual:pool 4\|organism part:olfactory bulb\|sample name:E MTAB 11083:F4 mCherry\|sex:mixed\|stimulus:injected with EnvA RV GFP\|strain:Ab x Tu x TL x WIK	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E MTAB 11083:F4 mCherry s	F4 mCherry s	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	Experimental Factor: fraction:mCherry+/GFP	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina HiSeq 2500	ERP132560	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	2874F11-1_210715_D00404_0538_BCD91CANXX_TGCAGCTA-GTAAGGAG_L006_R1_001.fastq.gz	fastq	672319791.0	13182741.0	E MTAB 11083:2874F11 1 210715 D00404 0538 BCD91CANXX TGCAGCTA GTAAGGAG L006	0:51 1:0	A:181508034;C:150928549;G:146124085;T:193711358;N:47765	51	0	181508034	150928549	146124085	193711358	47765	ERX6698594	ERS8070383	ERA6757553	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	1	0.71726		0.19842		0.74986		0.53363		51		B		usable mapping rate	illumina	hiseq_era	unknown	poly_a	nextera	sc	single_cell_plate	smartseq	Switzerland	2021-12-01	Adult	Adult	Brain	Nervous System
10266	10266	ERR7131142	ERX6698594	ERS8070383	ERP132560	PRJEB48218	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E-MTAB-11083	Transcriptome Analysis	To investigate the effects of rabies infection on neuronal gene expression we compared gene profiles of rabies infected and non infected GABAergic neurons in the Zebrafish olfactory bulb.	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	Protocols: EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	F4 mCherry	SAMEA10418599	Friedrich Miescher Institute for Biomedical Research	ENA first public:2021 12 01\|ENA last update:2021 12 01\|External Id:SAMEA10418599\|INSDC center alias:Friedrich Miescher Institute for Biomedical Research\|INSDC center name:Friedrich Miescher Institute for Biomedical Research\|INSDC first public:2021 12 01T00:23:59Z\|INSDC last update:2021 12 01T00:23:59Z\|INSDC status:public\|Submitter Id:E MTAB 11083:F4 mCherry\|age:9\|broker name:ArrayExpress\|cell type:GABAergic neuron\|common name:zebrafish\|developmental stage:adult\|fraction:mCherry+/GFP \|genotype:Tg[gad1b:Gal4 UAS:TVA mCherry]\|individual:pool 4\|organism part:olfactory bulb\|sample name:E MTAB 11083:F4 mCherry\|sex:mixed\|stimulus:injected with EnvA RV GFP\|strain:Ab x Tu x TL x WIK	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E MTAB 11083:F4 mCherry s	F4 mCherry s	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	Experimental Factor: fraction:mCherry+/GFP	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina HiSeq 2500	ERP132560	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	2874F11-2_210715_D00404_0538_BCD91CANXX_TGCAGCTA-GTAAGGAG_L007_R1_001.fastq.gz	fastq	675486075.0	13244825.0	E MTAB 11083:2874F11 2 210715 D00404 0538 BCD91CANXX TGCAGCTA GTAAGGAG L007	0:51 1:0	A:182462261;C:151688554;G:146902713;T:194385945;N:46602	51	0	182462261	151688554	146902713	194385945	46602	ERX6698594	ERS8070383	ERA6757553	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	1	0.71745		0.19727		0.74805		0.53092		51		B		usable mapping rate	illumina	hiseq_era	unknown	poly_a	nextera	sc	single_cell_plate	smartseq	Switzerland	2021-12-01	Adult	Adult	Brain	Nervous System
10267	10267	ERR7131139	ERX6698593	ERS8070382	ERP132560	PRJEB48218	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E-MTAB-11083	Transcriptome Analysis	To investigate the effects of rabies infection on neuronal gene expression we compared gene profiles of rabies infected and non infected GABAergic neurons in the Zebrafish olfactory bulb.	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	Protocols: EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	F3 Nega	SAMEA10418598	Friedrich Miescher Institute for Biomedical Research	ENA first public:2021 12 01\|ENA last update:2021 12 01\|External Id:SAMEA10418598\|INSDC center alias:Friedrich Miescher Institute for Biomedical Research\|INSDC center name:Friedrich Miescher Institute for Biomedical Research\|INSDC first public:2021 12 01T00:23:59Z\|INSDC last update:2021 12 01T00:23:59Z\|INSDC status:public\|Submitter Id:E MTAB 11083:F3 Nega\|age:9\|broker name:ArrayExpress\|cell type:GABAergic neuron\|common name:zebrafish\|developmental stage:adult\|fraction:mCherry /GFP \|genotype:Tg[gad1b:Gal4 UAS:TVA mCherry]\|individual:pool 3\|organism part:olfactory bulb\|sample name:E MTAB 11083:F3 Nega\|sex:mixed\|stimulus:injected with EnvA RV GFP\|strain:Ab x Tu x TL x WIK	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E MTAB 11083:F3 Nega s	F3 Nega s	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	Experimental Factor: fraction:mCherry /GFP	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina HiSeq 2500	ERP132560	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	2874F7-1_210715_D00404_0538_BCD91CANXX_CGATCAGT-CGTCTAAT_L006_R1_001.fastq.gz	fastq	630093627.0	12354777.0	E MTAB 11083:2874F7 1 210715 D00404 0538 BCD91CANXX CGATCAGT CGTCTAAT L006	0:51 1:0	A:165132739;C:146179836;G:142796880;T:175940613;N:43559	51	0	165132739	146179836	142796880	175940613	43559	ERX6698593	ERS8070382	ERA6757553	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	1	0.81672		0.15219		0.71277		0.52461		51		B		usable mapping rate	illumina	hiseq_era	unknown	poly_a	nextera	sc	single_cell_plate	smartseq	Switzerland	2021-12-01	Adult	Adult	Brain	Nervous System
10268	10268	ERR7131140	ERX6698593	ERS8070382	ERP132560	PRJEB48218	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E-MTAB-11083	Transcriptome Analysis	To investigate the effects of rabies infection on neuronal gene expression we compared gene profiles of rabies infected and non infected GABAergic neurons in the Zebrafish olfactory bulb.	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	Protocols: EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	F3 Nega	SAMEA10418598	Friedrich Miescher Institute for Biomedical Research	ENA first public:2021 12 01\|ENA last update:2021 12 01\|External Id:SAMEA10418598\|INSDC center alias:Friedrich Miescher Institute for Biomedical Research\|INSDC center name:Friedrich Miescher Institute for Biomedical Research\|INSDC first public:2021 12 01T00:23:59Z\|INSDC last update:2021 12 01T00:23:59Z\|INSDC status:public\|Submitter Id:E MTAB 11083:F3 Nega\|age:9\|broker name:ArrayExpress\|cell type:GABAergic neuron\|common name:zebrafish\|developmental stage:adult\|fraction:mCherry /GFP \|genotype:Tg[gad1b:Gal4 UAS:TVA mCherry]\|individual:pool 3\|organism part:olfactory bulb\|sample name:E MTAB 11083:F3 Nega\|sex:mixed\|stimulus:injected with EnvA RV GFP\|strain:Ab x Tu x TL x WIK	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E MTAB 11083:F3 Nega s	F3 Nega s	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	Experimental Factor: fraction:mCherry /GFP	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina HiSeq 2500	ERP132560	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	2874F7-2_210715_D00404_0538_BCD91CANXX_CGATCAGT-CGTCTAAT_L007_R1_001.fastq.gz	fastq	632305242.0	12398142.0	E MTAB 11083:2874F7 2 210715 D00404 0538 BCD91CANXX CGATCAGT CGTCTAAT L007	0:51 1:0	A:165832174;C:146751895;G:143384539;T:176293313;N:43321	51	0	165832174	146751895	143384539	176293313	43321	ERX6698593	ERS8070382	ERA6757553	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	1	0.81791		0.15444		0.7151		0.52585		51		B		usable mapping rate	illumina	hiseq_era	unknown	poly_a	nextera	sc	single_cell_plate	smartseq	Switzerland	2021-12-01	Adult	Adult	Brain	Nervous System
10269	10269	ERR7131137	ERX6698592	ERS8070381	ERP132560	PRJEB48218	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E-MTAB-11083	Transcriptome Analysis	To investigate the effects of rabies infection on neuronal gene expression we compared gene profiles of rabies infected and non infected GABAergic neurons in the Zebrafish olfactory bulb.	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	Protocols: EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	F3 mCherry GFP	SAMEA10418597	Friedrich Miescher Institute for Biomedical Research	ENA first public:2021 12 01\|ENA last update:2021 12 01\|External Id:SAMEA10418597\|INSDC center alias:Friedrich Miescher Institute for Biomedical Research\|INSDC center name:Friedrich Miescher Institute for Biomedical Research\|INSDC first public:2021 12 01T00:23:59Z\|INSDC last update:2021 12 01T00:23:59Z\|INSDC status:public\|Submitter Id:E MTAB 11083:F3 mCherry GFP\|age:9\|broker name:ArrayExpress\|cell type:GABAergic neuron\|common name:zebrafish\|developmental stage:adult\|fraction:mCherry+/GFP+\|genotype:Tg[gad1b:Gal4 UAS:TVA mCherry]\|individual:pool 3\|organism part:olfactory bulb\|sample name:E MTAB 11083:F3 mCherry GFP\|sex:mixed\|stimulus:injected with EnvA RV GFP\|strain:Ab x Tu x TL x WIK	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E MTAB 11083:F3 mCherry GFP s	F3 mCherry GFP s	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	Experimental Factor: fraction:mCherry+/GFP+	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina HiSeq 2500	ERP132560	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	2874F9-1_210715_D00404_0538_BCD91CANXX_TGCAGCTA-CTCTCTAT_L006_R1_001.fastq.gz	fastq	660379620.0	12948620.0	E MTAB 11083:2874F9 1 210715 D00404 0538 BCD91CANXX TGCAGCTA CTCTCTAT L006	0:51 1:0	A:178482695;C:147417787;G:143797476;T:190635173;N:46489	51	0	178482695	147417787	143797476	190635173	46489	ERX6698592	ERS8070381	ERA6757553	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	1	0.65635		0.17778		0.76899		0.52957		51		B		usable mapping rate	illumina	hiseq_era	unknown	poly_a	nextera	sc	single_cell_plate	smartseq	Switzerland	2021-12-01	Adult	Adult	Brain	Nervous System
10270	10270	ERR7131138	ERX6698592	ERS8070381	ERP132560	PRJEB48218	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E-MTAB-11083	Transcriptome Analysis	To investigate the effects of rabies infection on neuronal gene expression we compared gene profiles of rabies infected and non infected GABAergic neurons in the Zebrafish olfactory bulb.	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	Protocols: EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	F3 mCherry GFP	SAMEA10418597	Friedrich Miescher Institute for Biomedical Research	ENA first public:2021 12 01\|ENA last update:2021 12 01\|External Id:SAMEA10418597\|INSDC center alias:Friedrich Miescher Institute for Biomedical Research\|INSDC center name:Friedrich Miescher Institute for Biomedical Research\|INSDC first public:2021 12 01T00:23:59Z\|INSDC last update:2021 12 01T00:23:59Z\|INSDC status:public\|Submitter Id:E MTAB 11083:F3 mCherry GFP\|age:9\|broker name:ArrayExpress\|cell type:GABAergic neuron\|common name:zebrafish\|developmental stage:adult\|fraction:mCherry+/GFP+\|genotype:Tg[gad1b:Gal4 UAS:TVA mCherry]\|individual:pool 3\|organism part:olfactory bulb\|sample name:E MTAB 11083:F3 mCherry GFP\|sex:mixed\|stimulus:injected with EnvA RV GFP\|strain:Ab x Tu x TL x WIK	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E MTAB 11083:F3 mCherry GFP s	F3 mCherry GFP s	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	Experimental Factor: fraction:mCherry+/GFP+	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina HiSeq 2500	ERP132560	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	2874F9-2_210715_D00404_0538_BCD91CANXX_TGCAGCTA-CTCTCTAT_L007_R1_001.fastq.gz	fastq	662411307.0	12988457.0	E MTAB 11083:2874F9 2 210715 D00404 0538 BCD91CANXX TGCAGCTA CTCTCTAT L007	0:51 1:0	A:179158323;C:147942300;G:144319925;T:190945370;N:45389	51	0	179158323	147942300	144319925	190945370	45389	ERX6698592	ERS8070381	ERA6757553	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	1	0.65813		0.17896		0.77076		0.52835		51		B		usable mapping rate	illumina	hiseq_era	unknown	poly_a	nextera	sc	single_cell_plate	smartseq	Switzerland	2021-12-01	Adult	Adult	Brain	Nervous System
10271	10271	ERR7131135	ERX6698591	ERS8070380	ERP132560	PRJEB48218	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E-MTAB-11083	Transcriptome Analysis	To investigate the effects of rabies infection on neuronal gene expression we compared gene profiles of rabies infected and non infected GABAergic neurons in the Zebrafish olfactory bulb.	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	Protocols: EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	F3 mCherry	SAMEA10418596	Friedrich Miescher Institute for Biomedical Research	ENA first public:2021 12 01\|ENA last update:2021 12 01\|External Id:SAMEA10418596\|INSDC center alias:Friedrich Miescher Institute for Biomedical Research\|INSDC center name:Friedrich Miescher Institute for Biomedical Research\|INSDC first public:2021 12 01T00:23:59Z\|INSDC last update:2021 12 01T00:23:59Z\|INSDC status:public\|Submitter Id:E MTAB 11083:F3 mCherry\|age:9\|broker name:ArrayExpress\|cell type:GABAergic neuron\|common name:zebrafish\|developmental stage:adult\|fraction:mCherry+/GFP \|genotype:Tg[gad1b:Gal4 UAS:TVA mCherry]\|individual:pool 3\|organism part:olfactory bulb\|sample name:E MTAB 11083:F3 mCherry\|sex:mixed\|stimulus:injected with EnvA RV GFP\|strain:Ab x Tu x TL x WIK	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E MTAB 11083:F3 mCherry s	F3 mCherry s	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	Experimental Factor: fraction:mCherry+/GFP	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina HiSeq 2500	ERP132560	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	2874F8-1_210715_D00404_0538_BCD91CANXX_CGATCAGT-TCTCTCCG_L006_R1_001.fastq.gz	fastq	698608353.0	13698203.0	E MTAB 11083:2874F8 1 210715 D00404 0538 BCD91CANXX CGATCAGT TCTCTCCG L006	0:51 1:0	A:188718612;C:156814081;G:151125083;T:201901570;N:49007	51	0	188718612	156814081	151125083	201901570	49007	ERX6698591	ERS8070380	ERA6757553	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	1	0.70185		0.21547		0.75588		0.53853		51		B		usable mapping rate	illumina	hiseq_era	unknown	poly_a	nextera	sc	single_cell_plate	smartseq	Switzerland	2021-12-01	Adult	Adult	Brain	Nervous System
10272	10272	ERR7131136	ERX6698591	ERS8070380	ERP132560	PRJEB48218	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E-MTAB-11083	Transcriptome Analysis	To investigate the effects of rabies infection on neuronal gene expression we compared gene profiles of rabies infected and non infected GABAergic neurons in the Zebrafish olfactory bulb.	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	Protocols: EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	F3 mCherry	SAMEA10418596	Friedrich Miescher Institute for Biomedical Research	ENA first public:2021 12 01\|ENA last update:2021 12 01\|External Id:SAMEA10418596\|INSDC center alias:Friedrich Miescher Institute for Biomedical Research\|INSDC center name:Friedrich Miescher Institute for Biomedical Research\|INSDC first public:2021 12 01T00:23:59Z\|INSDC last update:2021 12 01T00:23:59Z\|INSDC status:public\|Submitter Id:E MTAB 11083:F3 mCherry\|age:9\|broker name:ArrayExpress\|cell type:GABAergic neuron\|common name:zebrafish\|developmental stage:adult\|fraction:mCherry+/GFP \|genotype:Tg[gad1b:Gal4 UAS:TVA mCherry]\|individual:pool 3\|organism part:olfactory bulb\|sample name:E MTAB 11083:F3 mCherry\|sex:mixed\|stimulus:injected with EnvA RV GFP\|strain:Ab x Tu x TL x WIK	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E MTAB 11083:F3 mCherry s	F3 mCherry s	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	Experimental Factor: fraction:mCherry+/GFP	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina HiSeq 2500	ERP132560	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	2874F8-2_210715_D00404_0538_BCD91CANXX_CGATCAGT-TCTCTCCG_L007_R1_001.fastq.gz	fastq	699869175.0	13722925.0	E MTAB 11083:2874F8 2 210715 D00404 0538 BCD91CANXX CGATCAGT TCTCTCCG L007	0:51 1:0	A:189192315;C:157176897;G:151498983;T:201952867;N:48113	51	0	189192315	157176897	151498983	201952867	48113	ERX6698591	ERS8070380	ERA6757553	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	1	0.70221		0.21684		0.75621		0.53787		51		B		usable mapping rate	illumina	hiseq_era	unknown	poly_a	nextera	sc	single_cell_plate	smartseq	Switzerland	2021-12-01	Adult	Adult	Brain	Nervous System
10273	10273	ERR7131133	ERX6698590	ERS8070379	ERP132560	PRJEB48218	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E-MTAB-11083	Transcriptome Analysis	To investigate the effects of rabies infection on neuronal gene expression we compared gene profiles of rabies infected and non infected GABAergic neurons in the Zebrafish olfactory bulb.	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	Protocols: EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	F2 Nega	SAMEA10418595	Friedrich Miescher Institute for Biomedical Research	ENA first public:2021 12 01\|ENA last update:2021 12 01\|External Id:SAMEA10418595\|INSDC center alias:Friedrich Miescher Institute for Biomedical Research\|INSDC center name:Friedrich Miescher Institute for Biomedical Research\|INSDC first public:2021 12 01T00:23:59Z\|INSDC last update:2021 12 01T00:23:59Z\|INSDC status:public\|Submitter Id:E MTAB 11083:F2 Nega\|age:9\|broker name:ArrayExpress\|cell type:GABAergic neuron\|common name:zebrafish\|developmental stage:adult\|fraction:mCherry /GFP \|genotype:Tg[gad1b:Gal4 UAS:TVA mCherry]\|individual:pool 2\|organism part:olfactory bulb\|sample name:E MTAB 11083:F2 Nega\|sex:mixed\|stimulus:injected with EnvA RV GFP\|strain:Ab x Tu x TL x WIK	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E MTAB 11083:F2 Nega s	F2 Nega s	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	Experimental Factor: fraction:mCherry /GFP	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina HiSeq 2500	ERP132560	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	2874F4-1_210715_D00404_0538_BCD91CANXX_CGATCAGT-ACTGCATA_L006_R1_001.fastq.gz	fastq	573812985.0	11251235.0	E MTAB 11083:2874F4 1 210715 D00404 0538 BCD91CANXX CGATCAGT ACTGCATA L006	0:51 1:0	A:150716404;C:132203167;G:129732968;T:161120057;N:40389	51	0	150716404	132203167	129732968	161120057	40389	ERX6698590	ERS8070379	ERA6757553	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	1	0.81899		0.17302		0.72281		0.54315		51		B		usable mapping rate	illumina	hiseq_era	unknown	poly_a	nextera	sc	single_cell_plate	smartseq	Switzerland	2021-12-01	Adult	Adult	Brain	Nervous System
10274	10274	ERR7131134	ERX6698590	ERS8070379	ERP132560	PRJEB48218	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E-MTAB-11083	Transcriptome Analysis	To investigate the effects of rabies infection on neuronal gene expression we compared gene profiles of rabies infected and non infected GABAergic neurons in the Zebrafish olfactory bulb.	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	Protocols: EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	F2 Nega	SAMEA10418595	Friedrich Miescher Institute for Biomedical Research	ENA first public:2021 12 01\|ENA last update:2021 12 01\|External Id:SAMEA10418595\|INSDC center alias:Friedrich Miescher Institute for Biomedical Research\|INSDC center name:Friedrich Miescher Institute for Biomedical Research\|INSDC first public:2021 12 01T00:23:59Z\|INSDC last update:2021 12 01T00:23:59Z\|INSDC status:public\|Submitter Id:E MTAB 11083:F2 Nega\|age:9\|broker name:ArrayExpress\|cell type:GABAergic neuron\|common name:zebrafish\|developmental stage:adult\|fraction:mCherry /GFP \|genotype:Tg[gad1b:Gal4 UAS:TVA mCherry]\|individual:pool 2\|organism part:olfactory bulb\|sample name:E MTAB 11083:F2 Nega\|sex:mixed\|stimulus:injected with EnvA RV GFP\|strain:Ab x Tu x TL x WIK	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E MTAB 11083:F2 Nega s	F2 Nega s	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	Experimental Factor: fraction:mCherry /GFP	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina HiSeq 2500	ERP132560	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	2874F4-2_210715_D00404_0538_BCD91CANXX_CGATCAGT-ACTGCATA_L007_R1_001.fastq.gz	fastq	576184587.0	11297737.0	E MTAB 11083:2874F4 2 210715 D00404 0538 BCD91CANXX CGATCAGT ACTGCATA L007	0:51 1:0	A:151387408;C:132788210;G:130392043;T:161577529;N:39397	51	0	151387408	132788210	130392043	161577529	39397	ERX6698590	ERS8070379	ERA6757553	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	1	0.81999		0.17082		0.72196		0.54505		51		B		usable mapping rate	illumina	hiseq_era	unknown	poly_a	nextera	sc	single_cell_plate	smartseq	Switzerland	2021-12-01	Adult	Adult	Brain	Nervous System
10275	10275	ERR7131131	ERX6698589	ERS8070378	ERP132560	PRJEB48218	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E-MTAB-11083	Transcriptome Analysis	To investigate the effects of rabies infection on neuronal gene expression we compared gene profiles of rabies infected and non infected GABAergic neurons in the Zebrafish olfactory bulb.	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	Protocols: EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	F2 mCherry GFP	SAMEA10418594	Friedrich Miescher Institute for Biomedical Research	ENA first public:2021 12 01\|ENA last update:2021 12 01\|External Id:SAMEA10418594\|INSDC center alias:Friedrich Miescher Institute for Biomedical Research\|INSDC center name:Friedrich Miescher Institute for Biomedical Research\|INSDC first public:2021 12 01T00:23:59Z\|INSDC last update:2021 12 01T00:23:59Z\|INSDC status:public\|Submitter Id:E MTAB 11083:F2 mCherry GFP\|age:9\|broker name:ArrayExpress\|cell type:GABAergic neuron\|common name:zebrafish\|developmental stage:adult\|fraction:mCherry+/GFP+\|genotype:Tg[gad1b:Gal4 UAS:TVA mCherry]\|individual:pool 2\|organism part:olfactory bulb\|sample name:E MTAB 11083:F2 mCherry GFP\|sex:mixed\|stimulus:injected with EnvA RV GFP\|strain:Ab x Tu x TL x WIK	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E MTAB 11083:F2 mCherry GFP s	F2 mCherry GFP s	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	Experimental Factor: fraction:mCherry+/GFP+	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina HiSeq 2500	ERP132560	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	2874F6-1_210715_D00404_0538_BCD91CANXX_CGATCAGT-CTAAGCCT_L006_R1_001.fastq.gz	fastq	654811032.0	12839432.0	E MTAB 11083:2874F6 1 210715 D00404 0538 BCD91CANXX CGATCAGT CTAAGCCT L006	0:51 1:0	A:177403486;C:146202733;G:142207545;T:188951373;N:45895	51	0	177403486	146202733	142207545	188951373	45895	ERX6698589	ERS8070378	ERA6757553	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	1	0.67854		0.21407		0.76104		0.52713		51		B		usable mapping rate	illumina	hiseq_era	unknown	poly_a	nextera	sc	single_cell_plate	smartseq	Switzerland	2021-12-01	Adult	Adult	Brain	Nervous System
10276	10276	ERR7131132	ERX6698589	ERS8070378	ERP132560	PRJEB48218	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E-MTAB-11083	Transcriptome Analysis	To investigate the effects of rabies infection on neuronal gene expression we compared gene profiles of rabies infected and non infected GABAergic neurons in the Zebrafish olfactory bulb.	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	Protocols: EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	F2 mCherry GFP	SAMEA10418594	Friedrich Miescher Institute for Biomedical Research	ENA first public:2021 12 01\|ENA last update:2021 12 01\|External Id:SAMEA10418594\|INSDC center alias:Friedrich Miescher Institute for Biomedical Research\|INSDC center name:Friedrich Miescher Institute for Biomedical Research\|INSDC first public:2021 12 01T00:23:59Z\|INSDC last update:2021 12 01T00:23:59Z\|INSDC status:public\|Submitter Id:E MTAB 11083:F2 mCherry GFP\|age:9\|broker name:ArrayExpress\|cell type:GABAergic neuron\|common name:zebrafish\|developmental stage:adult\|fraction:mCherry+/GFP+\|genotype:Tg[gad1b:Gal4 UAS:TVA mCherry]\|individual:pool 2\|organism part:olfactory bulb\|sample name:E MTAB 11083:F2 mCherry GFP\|sex:mixed\|stimulus:injected with EnvA RV GFP\|strain:Ab x Tu x TL x WIK	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E MTAB 11083:F2 mCherry GFP s	F2 mCherry GFP s	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	Experimental Factor: fraction:mCherry+/GFP+	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina HiSeq 2500	ERP132560	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	2874F6-2_210715_D00404_0538_BCD91CANXX_CGATCAGT-CTAAGCCT_L007_R1_001.fastq.gz	fastq	656911926.0	12880626.0	E MTAB 11083:2874F6 2 210715 D00404 0538 BCD91CANXX CGATCAGT CTAAGCCT L007	0:51 1:0	A:178119212;C:146730132;G:142725348;T:189293212;N:44022	51	0	178119212	146730132	142725348	189293212	44022	ERX6698589	ERS8070378	ERA6757553	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	1	0.68162		0.21431		0.761		0.5071		51		B		usable mapping rate	illumina	hiseq_era	unknown	poly_a	nextera	sc	single_cell_plate	smartseq	Switzerland	2021-12-01	Adult	Adult	Brain	Nervous System
10277	10277	ERR7131129	ERX6698588	ERS8070377	ERP132560	PRJEB48218	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E-MTAB-11083	Transcriptome Analysis	To investigate the effects of rabies infection on neuronal gene expression we compared gene profiles of rabies infected and non infected GABAergic neurons in the Zebrafish olfactory bulb.	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	Protocols: EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	F2 mCherry	SAMEA10418593	Friedrich Miescher Institute for Biomedical Research	ENA first public:2021 12 01\|ENA last update:2021 12 01\|External Id:SAMEA10418593\|INSDC center alias:Friedrich Miescher Institute for Biomedical Research\|INSDC center name:Friedrich Miescher Institute for Biomedical Research\|INSDC first public:2021 12 01T00:23:59Z\|INSDC last update:2021 12 01T00:23:59Z\|INSDC status:public\|Submitter Id:E MTAB 11083:F2 mCherry\|age:9\|broker name:ArrayExpress\|cell type:GABAergic neuron\|common name:zebrafish\|developmental stage:adult\|fraction:mCherry+/GFP \|genotype:Tg[gad1b:Gal4 UAS:TVA mCherry]\|individual:pool 2\|organism part:olfactory bulb\|sample name:E MTAB 11083:F2 mCherry\|sex:mixed\|stimulus:injected with EnvA RV GFP\|strain:Ab x Tu x TL x WIK	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E MTAB 11083:F2 mCherry s	F2 mCherry s	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	Experimental Factor: fraction:mCherry+/GFP	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina HiSeq 2500	ERP132560	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	2874F5-1_210715_D00404_0538_BCD91CANXX_CGATCAGT-AAGGAGTA_L006_R1_001.fastq.gz	fastq	607851558.0	11918658.0	E MTAB 11083:2874F5 1 210715 D00404 0538 BCD91CANXX CGATCAGT AAGGAGTA L006	0:51 1:0	A:164814138;C:136071648;G:132945950;T:173976881;N:42941	51	0	164814138	136071648	132945950	173976881	42941	ERX6698588	ERS8070377	ERA6757553	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	1	0.78967		0.18905		0.73241		0.52347		51		B		usable mapping rate	illumina	hiseq_era	unknown	poly_a	nextera	sc	single_cell_plate	smartseq	Switzerland	2021-12-01	Adult	Adult	Brain	Nervous System
10278	10278	ERR7131130	ERX6698588	ERS8070377	ERP132560	PRJEB48218	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E-MTAB-11083	Transcriptome Analysis	To investigate the effects of rabies infection on neuronal gene expression we compared gene profiles of rabies infected and non infected GABAergic neurons in the Zebrafish olfactory bulb.	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	Protocols: EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	F2 mCherry	SAMEA10418593	Friedrich Miescher Institute for Biomedical Research	ENA first public:2021 12 01\|ENA last update:2021 12 01\|External Id:SAMEA10418593\|INSDC center alias:Friedrich Miescher Institute for Biomedical Research\|INSDC center name:Friedrich Miescher Institute for Biomedical Research\|INSDC first public:2021 12 01T00:23:59Z\|INSDC last update:2021 12 01T00:23:59Z\|INSDC status:public\|Submitter Id:E MTAB 11083:F2 mCherry\|age:9\|broker name:ArrayExpress\|cell type:GABAergic neuron\|common name:zebrafish\|developmental stage:adult\|fraction:mCherry+/GFP \|genotype:Tg[gad1b:Gal4 UAS:TVA mCherry]\|individual:pool 2\|organism part:olfactory bulb\|sample name:E MTAB 11083:F2 mCherry\|sex:mixed\|stimulus:injected with EnvA RV GFP\|strain:Ab x Tu x TL x WIK	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E MTAB 11083:F2 mCherry s	F2 mCherry s	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	Experimental Factor: fraction:mCherry+/GFP	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina HiSeq 2500	ERP132560	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	2874F5-2_210715_D00404_0538_BCD91CANXX_CGATCAGT-AAGGAGTA_L007_R1_001.fastq.gz	fastq	610931805.0	11979055.0	E MTAB 11083:2874F5 2 210715 D00404 0538 BCD91CANXX CGATCAGT AAGGAGTA L007	0:51 1:0	A:165714775;C:136822925;G:133684294;T:174667814;N:41997	51	0	165714775	136822925	133684294	174667814	41997	ERX6698588	ERS8070377	ERA6757553	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	1	0.78869		0.18885		0.73156		0.51691		51		B		usable mapping rate	illumina	hiseq_era	unknown	poly_a	nextera	sc	single_cell_plate	smartseq	Switzerland	2021-12-01	Adult	Adult	Brain	Nervous System
10279	10279	ERR7131127	ERX6698587	ERS8070376	ERP132560	PRJEB48218	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E-MTAB-11083	Transcriptome Analysis	To investigate the effects of rabies infection on neuronal gene expression we compared gene profiles of rabies infected and non infected GABAergic neurons in the Zebrafish olfactory bulb.	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	Protocols: EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	F1 Nega	SAMEA10418592	Friedrich Miescher Institute for Biomedical Research	ENA first public:2021 12 01\|ENA last update:2021 12 01\|External Id:SAMEA10418592\|INSDC center alias:Friedrich Miescher Institute for Biomedical Research\|INSDC center name:Friedrich Miescher Institute for Biomedical Research\|INSDC first public:2021 12 01T00:23:59Z\|INSDC last update:2021 12 01T00:23:59Z\|INSDC status:public\|Submitter Id:E MTAB 11083:F1 Nega\|age:9\|broker name:ArrayExpress\|cell type:GABAergic neuron\|common name:zebrafish\|developmental stage:adult\|fraction:mCherry /GFP \|genotype:Tg[gad1b:Gal4 UAS:TVA mCherry]\|individual:pool 1\|organism part:olfactory bulb\|sample name:E MTAB 11083:F1 Nega\|sex:mixed\|stimulus:injected with EnvA RV GFP\|strain:Ab x Tu x TL x WIK	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E MTAB 11083:F1 Nega s	F1 Nega s	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	Experimental Factor: fraction:mCherry /GFP	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina HiSeq 2500	ERP132560	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	2874F1-1_210715_D00404_0538_BCD91CANXX_CGATCAGT-CTCTCTAT_L006_R1_001.fastq.gz	fastq	619561872.0	12148272.0	E MTAB 11083:2874F1 1 210715 D00404 0538 BCD91CANXX CGATCAGT CTCTCTAT L006	0:51 1:0	A:164385545;C:141746313;G:138163219;T:175223323;N:43472	51	0	164385545	141746313	138163219	175223323	43472	ERX6698587	ERS8070376	ERA6757553	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	1	0.80258		0.17703		0.72614		0.53483		51		B		usable mapping rate	illumina	hiseq_era	unknown	poly_a	nextera	sc	single_cell_plate	smartseq	Switzerland	2021-12-01	Adult	Adult	Brain	Nervous System
10280	10280	ERR7131128	ERX6698587	ERS8070376	ERP132560	PRJEB48218	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E-MTAB-11083	Transcriptome Analysis	To investigate the effects of rabies infection on neuronal gene expression we compared gene profiles of rabies infected and non infected GABAergic neurons in the Zebrafish olfactory bulb.	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	Protocols: EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	F1 Nega	SAMEA10418592	Friedrich Miescher Institute for Biomedical Research	ENA first public:2021 12 01\|ENA last update:2021 12 01\|External Id:SAMEA10418592\|INSDC center alias:Friedrich Miescher Institute for Biomedical Research\|INSDC center name:Friedrich Miescher Institute for Biomedical Research\|INSDC first public:2021 12 01T00:23:59Z\|INSDC last update:2021 12 01T00:23:59Z\|INSDC status:public\|Submitter Id:E MTAB 11083:F1 Nega\|age:9\|broker name:ArrayExpress\|cell type:GABAergic neuron\|common name:zebrafish\|developmental stage:adult\|fraction:mCherry /GFP \|genotype:Tg[gad1b:Gal4 UAS:TVA mCherry]\|individual:pool 1\|organism part:olfactory bulb\|sample name:E MTAB 11083:F1 Nega\|sex:mixed\|stimulus:injected with EnvA RV GFP\|strain:Ab x Tu x TL x WIK	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E MTAB 11083:F1 Nega s	F1 Nega s	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	Experimental Factor: fraction:mCherry /GFP	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina HiSeq 2500	ERP132560	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	2874F1-2_210715_D00404_0538_BCD91CANXX_CGATCAGT-CTCTCTAT_L007_R1_001.fastq.gz	fastq	621481971.0	12185921.0	E MTAB 11083:2874F1 2 210715 D00404 0538 BCD91CANXX CGATCAGT CTCTCTAT L007	0:51 1:0	A:165030774;C:142231469;G:138651078;T:175527080;N:41570	51	0	165030774	142231469	138651078	175527080	41570	ERX6698587	ERS8070376	ERA6757553	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	1	0.80248		0.17699		0.726		0.53711		51		B		usable mapping rate	illumina	hiseq_era	unknown	poly_a	nextera	sc	single_cell_plate	smartseq	Switzerland	2021-12-01	Adult	Adult	Brain	Nervous System
10281	10281	ERR7131125	ERX6698586	ERS8070375	ERP132560	PRJEB48218	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E-MTAB-11083	Transcriptome Analysis	To investigate the effects of rabies infection on neuronal gene expression we compared gene profiles of rabies infected and non infected GABAergic neurons in the Zebrafish olfactory bulb.	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	Protocols: EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	F1 mCherry GFP	SAMEA10418591	Friedrich Miescher Institute for Biomedical Research	ENA first public:2021 12 01\|ENA last update:2021 12 01\|External Id:SAMEA10418591\|INSDC center alias:Friedrich Miescher Institute for Biomedical Research\|INSDC center name:Friedrich Miescher Institute for Biomedical Research\|INSDC first public:2021 12 01T00:23:59Z\|INSDC last update:2021 12 01T00:23:59Z\|INSDC status:public\|Submitter Id:E MTAB 11083:F1 mCherry GFP\|age:9\|broker name:ArrayExpress\|cell type:GABAergic neuron\|common name:zebrafish\|developmental stage:adult\|fraction:mCherry+/GFP+\|genotype:Tg[gad1b:Gal4 UAS:TVA mCherry]\|individual:pool 1\|organism part:olfactory bulb\|sample name:E MTAB 11083:F1 mCherry GFP\|sex:mixed\|stimulus:injected with EnvA RV GFP\|strain:Ab x Tu x TL x WIK	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E MTAB 11083:F1 mCherry GFP s	F1 mCherry GFP s	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	Experimental Factor: fraction:mCherry+/GFP+	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina HiSeq 2500	ERP132560	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	2874F3-1_210715_D00404_0538_BCD91CANXX_CGATCAGT-GTAAGGAG_L006_R1_001.fastq.gz	fastq	651189369.0	12768419.0	E MTAB 11083:2874F3 1 210715 D00404 0538 BCD91CANXX CGATCAGT GTAAGGAG L006	0:51 1:0	A:176398415;C:145659111;G:142137610;T:186948280;N:45953	51	0	176398415	145659111	142137610	186948280	45953	ERX6698586	ERS8070375	ERA6757553	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	1	0.69561		0.18489		0.75345		0.52316		51		B		usable mapping rate	illumina	hiseq_era	unknown	poly_a	nextera	sc	single_cell_plate	smartseq	Switzerland	2021-12-01	Adult	Adult	Brain	Nervous System
10282	10282	ERR7131126	ERX6698586	ERS8070375	ERP132560	PRJEB48218	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E-MTAB-11083	Transcriptome Analysis	To investigate the effects of rabies infection on neuronal gene expression we compared gene profiles of rabies infected and non infected GABAergic neurons in the Zebrafish olfactory bulb.	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	Protocols: EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	F1 mCherry GFP	SAMEA10418591	Friedrich Miescher Institute for Biomedical Research	ENA first public:2021 12 01\|ENA last update:2021 12 01\|External Id:SAMEA10418591\|INSDC center alias:Friedrich Miescher Institute for Biomedical Research\|INSDC center name:Friedrich Miescher Institute for Biomedical Research\|INSDC first public:2021 12 01T00:23:59Z\|INSDC last update:2021 12 01T00:23:59Z\|INSDC status:public\|Submitter Id:E MTAB 11083:F1 mCherry GFP\|age:9\|broker name:ArrayExpress\|cell type:GABAergic neuron\|common name:zebrafish\|developmental stage:adult\|fraction:mCherry+/GFP+\|genotype:Tg[gad1b:Gal4 UAS:TVA mCherry]\|individual:pool 1\|organism part:olfactory bulb\|sample name:E MTAB 11083:F1 mCherry GFP\|sex:mixed\|stimulus:injected with EnvA RV GFP\|strain:Ab x Tu x TL x WIK	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E MTAB 11083:F1 mCherry GFP s	F1 mCherry GFP s	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	Experimental Factor: fraction:mCherry+/GFP+	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina HiSeq 2500	ERP132560	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	2874F3-2_210715_D00404_0538_BCD91CANXX_CGATCAGT-GTAAGGAG_L007_R1_001.fastq.gz	fastq	653398944.0	12811744.0	E MTAB 11083:2874F3 2 210715 D00404 0538 BCD91CANXX CGATCAGT GTAAGGAG L007	0:51 1:0	A:177139734;C:146171766;G:142707146;T:187335475;N:44823	51	0	177139734	146171766	142707146	187335475	44823	ERX6698586	ERS8070375	ERA6757553	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	1	0.69496		0.18414		0.75375		0.52317		51		B		usable mapping rate	illumina	hiseq_era	unknown	poly_a	nextera	sc	single_cell_plate	smartseq	Switzerland	2021-12-01	Adult	Adult	Brain	Nervous System
10283	10283	ERR7131123	ERX6698585	ERS8070374	ERP132560	PRJEB48218	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E-MTAB-11083	Transcriptome Analysis	To investigate the effects of rabies infection on neuronal gene expression we compared gene profiles of rabies infected and non infected GABAergic neurons in the Zebrafish olfactory bulb.	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	Protocols: EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	F1 mCherry	SAMEA10418590	Friedrich Miescher Institute for Biomedical Research	ENA first public:2021 12 01\|ENA last update:2021 12 01\|External Id:SAMEA10418590\|INSDC center alias:Friedrich Miescher Institute for Biomedical Research\|INSDC center name:Friedrich Miescher Institute for Biomedical Research\|INSDC first public:2021 12 01T00:23:59Z\|INSDC last update:2021 12 01T00:23:59Z\|INSDC status:public\|Submitter Id:E MTAB 11083:F1 mCherry\|age:9\|broker name:ArrayExpress\|cell type:GABAergic neuron\|common name:zebrafish\|developmental stage:adult\|fraction:mCherry+/GFP \|genotype:Tg[gad1b:Gal4 UAS:TVA mCherry]\|individual:pool 1\|organism part:olfactory bulb\|sample name:E MTAB 11083:F1 mCherry\|sex:mixed\|stimulus:injected with EnvA RV GFP\|strain:Ab x Tu x TL x WIK	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E MTAB 11083:F1 mCherry s	F1 mCherry s	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	Experimental Factor: fraction:mCherry+/GFP	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina HiSeq 2500	ERP132560	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	2874F2-1_210715_D00404_0538_BCD91CANXX_CGATCAGT-TATCCTCT_L006_R1_001.fastq.gz	fastq	613574319.0	12030869.0	E MTAB 11083:2874F2 1 210715 D00404 0538 BCD91CANXX CGATCAGT TATCCTCT L006	0:51 1:0	A:164891629;C:138401759;G:135818073;T:174419828;N:43030	51	0	164891629	138401759	135818073	174419828	43030	ERX6698585	ERS8070374	ERA6757553	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	1	0.79499		0.21674		0.73359		0.52207		51		B		usable mapping rate	illumina	hiseq_era	unknown	poly_a	nextera	sc	single_cell_plate	smartseq	Switzerland	2021-12-01	Adult	Adult	Brain	Nervous System
10284	10284	ERR7131124	ERX6698585	ERS8070374	ERP132560	PRJEB48218	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E-MTAB-11083	Transcriptome Analysis	To investigate the effects of rabies infection on neuronal gene expression we compared gene profiles of rabies infected and non infected GABAergic neurons in the Zebrafish olfactory bulb.	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	Protocols: EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	F1 mCherry	SAMEA10418590	Friedrich Miescher Institute for Biomedical Research	ENA first public:2021 12 01\|ENA last update:2021 12 01\|External Id:SAMEA10418590\|INSDC center alias:Friedrich Miescher Institute for Biomedical Research\|INSDC center name:Friedrich Miescher Institute for Biomedical Research\|INSDC first public:2021 12 01T00:23:59Z\|INSDC last update:2021 12 01T00:23:59Z\|INSDC status:public\|Submitter Id:E MTAB 11083:F1 mCherry\|age:9\|broker name:ArrayExpress\|cell type:GABAergic neuron\|common name:zebrafish\|developmental stage:adult\|fraction:mCherry+/GFP \|genotype:Tg[gad1b:Gal4 UAS:TVA mCherry]\|individual:pool 1\|organism part:olfactory bulb\|sample name:E MTAB 11083:F1 mCherry\|sex:mixed\|stimulus:injected with EnvA RV GFP\|strain:Ab x Tu x TL x WIK	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	E MTAB 11083:F1 mCherry s	F1 mCherry s	Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	EnvA RV GFP was injected to olfactory bulb in Tg[gad1b:Gal4 UAS:TVA mCherry] fish. Fish were kept in the standard fish system at 36 degree for 3 4 days. postwards olfactory bulbs were extracted from 3 5 fish and the samples were pooled. post standard dissociation processes cells were sorted by their fluorescent markers using LSRII. Batch 1 pool 1 to 3 was done 7 days before batch 2 pool 4 to 8. RNA was purified using single cell RNA purification Kit Norgen cat. 51800 mRNA seq libraries were generated using the SmartSeq2 approach Picelli et al Nature protocol 2014 with the following modifications: For cDNA pre amplification up to 10ng of RNA was used as input typically 1 3ng and Reverse Transcription was performed using Superscript IV Thermo Fisher Scientific 50C for 10min 80C for 10min. Amplified cDNA 1ng were converted to indexed sequencing libraries by tagmentation using in house purified Tn5 Picelli et al Genome Research 2014 and Illumina Nextera primers.	Experimental Factor: fraction:mCherry+/GFP	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina HiSeq 2500	ERP132560	Illumina HiSeq 2500 sequencing; Effect of rabies virus infection on gene expression in GABAergic neurons in the Zebrafish olfactory bulb	ENA FIRST PUBLIC:2022 07 07\|ENA LAST UPDATE:2022 07 07	2874F2-2_210715_D00404_0538_BCD91CANXX_CGATCAGT-TATCCTCT_L007_R1_001.fastq.gz	fastq	615666798.0	12071898.0	E MTAB 11083:2874F2 2 210715 D00404 0538 BCD91CANXX CGATCAGT TATCCTCT L007	0:51 1:0	A:165536502;C:138952758;G:136375193;T:174760659;N:41686	51	0	165536502	138952758	136375193	174760659	41686	ERX6698585	ERS8070374	ERA6757553	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	Friedrich Miescher Institute for Biomedical Research\|European Nucleotide Archive	1	0.7941		0.21645		0.73494		0.50761		51		B		usable mapping rate	illumina	hiseq_era	unknown	poly_a	nextera	sc	single_cell_plate	smartseq	Switzerland	2021-12-01	Adult	Adult	Brain	Nervous System
33311	33311	SRR29927545	SRX25421505	SRS22081661	SRP521592	PRJNA1139127	Laser capture microdissection RNA sequencing of zebrafish optic nerve regeneration	PRJNA1139127	Other	Zebrafish have the ability to successfully regenerate the connection from the eye to the brain following optic nerve injury in adult. To identify differentially expressed genes in the affected tissues we performed laser capture mRNA sequencing of the retinal ganglion cell layer inner nuclear layer outer nuclear layer and bulk optic nerve in 3 day post optic nerve injury versus naive control animals. The 3 xxx post injury time point was chosen as a time when axons are actively regenerating throughout the optic nerve to the optic chiasm. These data provide a resource for identifying genes expressed in each tissue and their differential expression during optic nerve regeneration.			ON 3d rep3	MCWR 2019 000157		strain:wild type\|dev stage:adult\|collection date:2019 10 18\|geo loc name:USA: Wisconsin Milwaukee\|sex:female\|tissue:optic nerve\|treatment:ON 3d rep3\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: 3 xxx post injury optic nerve	ON 3d rep3	ON 3d rep3	SMART Seqv4			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 2000	SRP521592			MCWR_2019_000157_S28_L001_R1_001.fastq.gz MCWR_2019_000157_S28_L001_R2_001.fastq.gz MCWR_2019_000157_S28_L002_R1_001.fastq.gz MCWR_2019_000157_S28_L002_R2_001.fastq.gz	fastq fastq fastq fastq	12637756180.0	41976869.0	MCWR 2019 000157 S28 L001 R1 001.fastq.gz	0:150.53 1:150.53	A:3303913534;C:3007130754;G:3036624621;T:3289934437;N:152834	150	150	3303913534	3007130754	3036624621	3289934437	152834	SRX25421505	SRS22081661	SRA1930690	Medical College of Wisconsin\|Cell Biology, Neurobiology, and Anatomy	Medical College of Wisconsin	2	0.9516	0.95161	0.06268	0.06324	0.7245	0.72539	0.50499	0.5082	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	sc	single_cell_plate	smartseq	United States	2024-07-23	Adult	Adult	Brain	Nervous System
33312	33312	SRR29927546	SRX25421504	SRS22081660	SRP521592	PRJNA1139127	Laser capture microdissection RNA sequencing of zebrafish optic nerve regeneration	PRJNA1139127	Other	Zebrafish have the ability to successfully regenerate the connection from the eye to the brain following optic nerve injury in adult. To identify differentially expressed genes in the affected tissues we performed laser capture mRNA sequencing of the retinal ganglion cell layer inner nuclear layer outer nuclear layer and bulk optic nerve in 3 day post optic nerve injury versus naive control animals. The 3 xxx post injury time point was chosen as a time when axons are actively regenerating throughout the optic nerve to the optic chiasm. These data provide a resource for identifying genes expressed in each tissue and their differential expression during optic nerve regeneration.			ON 3d rep2	MCWR 2019 000156		strain:wild type\|dev stage:adult\|collection date:2019 10 18\|geo loc name:USA: Wisconsin Milwaukee\|sex:female\|tissue:optic nerve\|treatment:ON 3d rep2\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: 3 xxx post injury optic nerve	ON 3d rep2	ON 3d rep2	SMART Seqv4			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 2000	SRP521592			MCWR_2019_000156_S27_L001_R1_001.fastq.gz MCWR_2019_000156_S27_L001_R2_001.fastq.gz MCWR_2019_000156_S27_L002_R1_001.fastq.gz MCWR_2019_000156_S27_L002_R2_001.fastq.gz	fastq fastq fastq fastq	8225156065.0	27320970.0	MCWR 2019 000156 S27 L001 R1 001.fastq.gz	0:150.53 1:150.53	A:2177338510;C:1933476228;G:1950713017;T:2163526872;N:101438	150	150	2177338510	1933476228	1950713017	2163526872	101438	SRX25421504	SRS22081660	SRA1930690	Medical College of Wisconsin\|Cell Biology, Neurobiology, and Anatomy	Medical College of Wisconsin	2	0.94816	0.94656	0.06839	0.06869	0.71873	0.72099	0.52048	0.51823	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	sc	single_cell_plate	smartseq	United States	2024-07-23	Adult	Adult	Brain	Nervous System
33314	33314	SRR29927548	SRX25421502	SRS22081658	SRP521592	PRJNA1139127	Laser capture microdissection RNA sequencing of zebrafish optic nerve regeneration	PRJNA1139127	Other	Zebrafish have the ability to successfully regenerate the connection from the eye to the brain following optic nerve injury in adult. To identify differentially expressed genes in the affected tissues we performed laser capture mRNA sequencing of the retinal ganglion cell layer inner nuclear layer outer nuclear layer and bulk optic nerve in 3 day post optic nerve injury versus naive control animals. The 3 xxx post injury time point was chosen as a time when axons are actively regenerating throughout the optic nerve to the optic chiasm. These data provide a resource for identifying genes expressed in each tissue and their differential expression during optic nerve regeneration.			ON 3d rep1	MCWR 2019 000149		strain:wild type\|dev stage:adult\|collection date:2019 10 18\|geo loc name:USA: Wisconsin Milwaukee\|sex:female\|tissue:optic nerve\|treatment:ON 3d rep1\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: 3 xxx post injury optic nerve	ON 3d rep1	ON 3d rep1	SMART Seqv4			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 2000	SRP521592			MCWR_2019_000149_S20_L001_R1_001.fastq.gz MCWR_2019_000149_S20_L001_R2_001.fastq.gz MCWR_2019_000149_S20_L002_R1_001.fastq.gz MCWR_2019_000149_S20_L002_R2_001.fastq.gz	fastq fastq fastq fastq	11234251579.0	37312508.0	MCWR 2019 000149 S20 L001 R1 001.fastq.gz	0:150.54 1:150.55	A:2884045359;C:2724366727;G:2744442031;T:2881252209;N:145253	150	150	2884045359	2724366727	2744442031	2881252209	145253	SRX25421502	SRS22081658	SRA1930690	Medical College of Wisconsin\|Cell Biology, Neurobiology, and Anatomy	Medical College of Wisconsin	2	0.95118	0.95151	0.09345	0.09458	0.69589	0.6953	0.47864	0.4794	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	sc	single_cell_plate	smartseq	United States	2024-07-23	Adult	Adult	Brain	Nervous System
33315	33315	SRR29927549	SRX25421501	SRS22081657	SRP521592	PRJNA1139127	Laser capture microdissection RNA sequencing of zebrafish optic nerve regeneration	PRJNA1139127	Other	Zebrafish have the ability to successfully regenerate the connection from the eye to the brain following optic nerve injury in adult. To identify differentially expressed genes in the affected tissues we performed laser capture mRNA sequencing of the retinal ganglion cell layer inner nuclear layer outer nuclear layer and bulk optic nerve in 3 day post optic nerve injury versus naive control animals. The 3 xxx post injury time point was chosen as a time when axons are actively regenerating throughout the optic nerve to the optic chiasm. These data provide a resource for identifying genes expressed in each tissue and their differential expression during optic nerve regeneration.			ON Control rep3	MCWR 2019 000148		strain:wild type\|dev stage:adult\|collection date:2019 10 18\|geo loc name:USA: Wisconsin Milwaukee\|sex:female\|tissue:optic nerve\|treatment:ON Control rep3\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: naive optic nerve	ON Control rep3	ON Control rep3	SMART Seqv4			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 2000	SRP521592			MCWR_2019_000148_S19_L002_R2_001.fastq.gz MCWR_2019_000148_S19_L002_R1_001.fastq.gz MCWR_2019_000148_S19_L001_R2_001.fastq.gz MCWR_2019_000148_S19_L001_R1_001.fastq.gz	fastq fastq fastq fastq	10659326860.0	35402192.0	MCWR 2019 000148 S19 L001 R1 001.fastq.gz	0:150.55 1:150.55	A:2756153864;C:2571019186;G:2591020090;T:2740998974;N:134746	150	150	2756153864	2571019186	2591020090	2740998974	134746	SRX25421501	SRS22081657	SRA1930690	Medical College of Wisconsin\|Cell Biology, Neurobiology, and Anatomy	Medical College of Wisconsin	2	0.95167	0.95091	0.09159	0.09247	0.74852	0.74961	0.46451	0.46354	150	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	sc	single_cell_plate	smartseq	United States	2024-07-23	Adult	Adult	Brain	Nervous System
33316	33316	SRR29927550	SRX25421500	SRS22081656	SRP521592	PRJNA1139127	Laser capture microdissection RNA sequencing of zebrafish optic nerve regeneration	PRJNA1139127	Other	Zebrafish have the ability to successfully regenerate the connection from the eye to the brain following optic nerve injury in adult. To identify differentially expressed genes in the affected tissues we performed laser capture mRNA sequencing of the retinal ganglion cell layer inner nuclear layer outer nuclear layer and bulk optic nerve in 3 day post optic nerve injury versus naive control animals. The 3 xxx post injury time point was chosen as a time when axons are actively regenerating throughout the optic nerve to the optic chiasm. These data provide a resource for identifying genes expressed in each tissue and their differential expression during optic nerve regeneration.			ON Control rep2	MCWR 2019 000147		strain:wild type\|dev stage:adult\|collection date:2019 10 18\|geo loc name:USA: Wisconsin Milwaukee\|sex:female\|tissue:optic nerve\|treatment:ON Control rep2\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: naive optic nerve	ON Control rep2	ON Control rep2	SMART Seqv4			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 2000	SRP521592			MCWR_2019_000147_S18_L002_R2_001.fastq.gz MCWR_2019_000147_S18_L002_R1_001.fastq.gz MCWR_2019_000147_S18_L001_R2_001.fastq.gz MCWR_2019_000147_S18_L001_R1_001.fastq.gz	fastq fastq fastq fastq	13568087444.0	45061061.0	MCWR 2019 000147 S18 L001 R1 001.fastq.gz	0:150.55 1:150.55	A:3431511167;C:3343690230;G:3365044224;T:3427668362;N:173461	150	150	3431511167	3343690230	3365044224	3427668362	173461	SRX25421500	SRS22081656	SRA1930690	Medical College of Wisconsin\|Cell Biology, Neurobiology, and Anatomy	Medical College of Wisconsin	2	0.95653	0.95547	0.08512	0.08497	0.73093	0.73143	0.46625	0.46899	150	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	sc	single_cell_plate	smartseq	United States	2024-07-23	Adult	Adult	Brain	Nervous System
33317	33317	SRR29927551	SRX25421499	SRS22081655	SRP521592	PRJNA1139127	Laser capture microdissection RNA sequencing of zebrafish optic nerve regeneration	PRJNA1139127	Other	Zebrafish have the ability to successfully regenerate the connection from the eye to the brain following optic nerve injury in adult. To identify differentially expressed genes in the affected tissues we performed laser capture mRNA sequencing of the retinal ganglion cell layer inner nuclear layer outer nuclear layer and bulk optic nerve in 3 day post optic nerve injury versus naive control animals. The 3 xxx post injury time point was chosen as a time when axons are actively regenerating throughout the optic nerve to the optic chiasm. These data provide a resource for identifying genes expressed in each tissue and their differential expression during optic nerve regeneration.			ON Control rep1	MCWR 2019 000146		strain:wild type\|dev stage:adult\|collection date:2019 10 18\|geo loc name:USA: Wisconsin Milwaukee\|sex:female\|tissue:optic nerve\|treatment:ON Control rep1\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: naive optic nerve	ON Control rep1	ON Control rep1	SMART Seqv4			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 2000	SRP521592			MCWR_2019_000146_S17_L002_R2_001.fastq.gz MCWR_2019_000146_S17_L002_R1_001.fastq.gz MCWR_2019_000146_S17_L001_R2_001.fastq.gz MCWR_2019_000146_S17_L001_R1_001.fastq.gz	fastq fastq fastq fastq	10264964293.0	34089023.0	MCWR 2019 000146 S17 L001 R1 001.fastq.gz	0:150.56 1:150.56	A:2551033720;C:2573448189;G:2588121299;T:2552234053;N:127032	150	150	2551033720	2573448189	2588121299	2552234053	127032	SRX25421499	SRS22081655	SRA1930690	Medical College of Wisconsin\|Cell Biology, Neurobiology, and Anatomy	Medical College of Wisconsin	2	0.95724	0.95715	0.07005	0.07059	0.75637	0.75732	0.42392	0.41384	151	150	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	sc	single_cell_plate	smartseq	United States	2024-07-23	Adult	Adult	Brain	Nervous System

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;