metadata: run_metadata: 29 rows where experiment.library_selection = "Oligo-dT", experiment.platform = "ILLUMINA" and tissue_curation

29 rows where experiment.library_selection = "Oligo-dT", experiment.platform = "ILLUMINA" and tissue_curation_coarse = "Muscular System"

descending

Link	rowid ▼	run.accession	experiment.accession	sample.accession	study.accession	bioproject	study.title	study.alias	study.type	study.abstract	sample.description	sample.alias	sample.attributes	experiment.title	experiment.alias	experiment.library_name	experiment.design_description	experiment.library_strategy	experiment.library_source	experiment.library_selection	experiment.library_layout	experiment.platform	experiment.instrument_model	experiment.study_ref	run.filename	run.semantic_name	run.total_bases	run.total_spots	run.alias	run.read_lengths	run.base_counts	run.r1_length	run.r2_length	run.Acount	run.Ccount	run.Gcount	run.Tcount	run.Ncount	run.experiment	run.pool_member	submission.accession	submission.srasource	submission.bioprojectsource	seqdetective.n_mates	seqdetective.mapping_rate.mate1	seqdetective.mapping_rate.mate2	seqdetective.nofeature_rate.mate1	seqdetective.nofeature_rate.mate2	seqdetective.sparsity.mate1	seqdetective.sparsity.mate2	seqdetective.pos_strand_rate.mate1	seqdetective.pos_strand_rate.mate2	seqdetective.readlen.mate1	seqdetective.readlen.mate2	seqdetective.judgement.mate1	seqdetective.judgement.mate2	seqdetective.judgement.reason	platform_family	instrument_generation	read_bias	selection_class	prep_kit	sc_or_bulk	tech_class	technology	submission.bioprojectsource.country	earliest_date	devstage_curation	devstage_curation_coarse	tissue_curation	tissue_curation_coarse
55305	55305	SRR11092476	SRX7731318	SRS6151725	SRP226922	PRJNA577226	Danio rerio breed:AB Transcriptome or Gene expression	PRJNA577226	Other	EpiGreen project investigated the nutrigenomic and nutriepigenomic effects of plant protein based diets on fish using zebrafish as a model. This study was also extended to a commercially important species Atlantic salmon. Ultimately this knowledge would be benefited for the industry to formulate sustainable diets based on terrestrial ingredients with properly addressing fish welfare concerns.	fast muscle	pea fishm6	strain:AB\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:laboratory\|age:6 month\|dev stage:adult\|sex:female\|tissue:fast muscle\|biomaterial provider:zebrafish lab Nord University\|birth location:zebrafish lab Nord University\|collected by:Anusha K.S.Dhanasiri Nord University\|collection date:2017 09\|health state:Healthy\|treatment:pea replicate6\|BioSampleModel:Model organism or animal	RNASeq of zebrafish: adult female fast muscle	pm6	pm6	Directional RNA libraries with PolyA mRNA enrichment	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	NextSeq 550	SRP226922	pm6.fastq.gz	fastq	2046858524.0	26932349.0	pm6.fastq.gz	0:76 1:0	A:512656433;C:497166196;G:475911685;T:561012780;N:111430	76	0	512656433	497166196	475911685	561012780	111430	SRX7731318	SRS6151725	SRA1043309	Nord Universitet\|Faculty of Biosciences and Aquaculture	Nord Universitet	1	0.97101		0.06659		0.82745		0.46321		76		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Norway	2020-02-15	Adult	Adult	Muscle	Muscular System
55306	55306	SRR11092477	SRX7731317	SRS6151724	SRP226922	PRJNA577226	Danio rerio breed:AB Transcriptome or Gene expression	PRJNA577226	Other	EpiGreen project investigated the nutrigenomic and nutriepigenomic effects of plant protein based diets on fish using zebrafish as a model. This study was also extended to a commercially important species Atlantic salmon. Ultimately this knowledge would be benefited for the industry to formulate sustainable diets based on terrestrial ingredients with properly addressing fish welfare concerns.	fast muscle	pea fishm5	strain:AB\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:laboratory\|age:6 month\|dev stage:adult\|sex:female\|tissue:fast muscle\|biomaterial provider:zebrafish lab Nord University\|birth location:zebrafish lab Nord University\|collected by:Anusha K.S.Dhanasiri Nord University\|collection date:2017 09\|health state:Healthy\|treatment:pea replicate5\|BioSampleModel:Model organism or animal	RNASeq of zebrafish: adult female fast muscle	pm5	pm5	Directional RNA libraries with PolyA mRNA enrichment	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	NextSeq 550	SRP226922	pm5.fastq.gz	fastq	1385366532.0	18228507.0	pm5.fastq.gz	0:76 1:0	A:351089576;C:337868838;G:315380752;T:380954376;N:72990	76	0	351089576	337868838	315380752	380954376	72990	SRX7731317	SRS6151724	SRA1043309	Nord Universitet\|Faculty of Biosciences and Aquaculture	Nord Universitet	1	0.96194		0.09162		0.81126		0.51366		76		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Norway	2020-02-15	Adult	Adult	Muscle	Muscular System
55307	55307	SRR11092478	SRX7731316	SRS6151723	SRP226922	PRJNA577226	Danio rerio breed:AB Transcriptome or Gene expression	PRJNA577226	Other	EpiGreen project investigated the nutrigenomic and nutriepigenomic effects of plant protein based diets on fish using zebrafish as a model. This study was also extended to a commercially important species Atlantic salmon. Ultimately this knowledge would be benefited for the industry to formulate sustainable diets based on terrestrial ingredients with properly addressing fish welfare concerns.	fast muscle	pea fishm4	strain:AB\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:laboratory\|age:6 month\|dev stage:adult\|sex:female\|tissue:fast muscle\|biomaterial provider:zebrafish lab Nord University\|birth location:zebrafish lab Nord University\|collected by:Anusha K.S.Dhanasiri Nord University\|collection date:2017 09\|health state:Healthy\|treatment:pea replicate4\|BioSampleModel:Model organism or animal	RNASeq of zebrafish: adult female fast muscle	pm4	pm4	Directional RNA libraries with PolyA mRNA enrichment	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	NextSeq 550	SRP226922	pm4.fastq.gz	fastq	2118394512.0	27873612.0	pm4.fastq.gz	0:76 1:0	A:558144544;C:509998861;G:479358157;T:570769039;N:123911	76	0	558144544	509998861	479358157	570769039	123911	SRX7731316	SRS6151723	SRA1043309	Nord Universitet\|Faculty of Biosciences and Aquaculture	Nord Universitet	1	0.94888		0.12658		0.8252		0.41386		76		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Norway	2020-02-15	Adult	Adult	Muscle	Muscular System
55308	55308	SRR11092479	SRX7731315	SRS6151722	SRP226922	PRJNA577226	Danio rerio breed:AB Transcriptome or Gene expression	PRJNA577226	Other	EpiGreen project investigated the nutrigenomic and nutriepigenomic effects of plant protein based diets on fish using zebrafish as a model. This study was also extended to a commercially important species Atlantic salmon. Ultimately this knowledge would be benefited for the industry to formulate sustainable diets based on terrestrial ingredients with properly addressing fish welfare concerns.	fast muscle	pea fishm3	strain:AB\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:laboratory\|age:6 month\|dev stage:adult\|sex:female\|tissue:fast muscle\|biomaterial provider:zebrafish lab Nord University\|birth location:zebrafish lab Nord University\|collected by:Anusha K.S.Dhanasiri Nord University\|collection date:2017 09\|health state:Healthy\|treatment:pea replicate3\|BioSampleModel:Model organism or animal	RNASeq of zebrafish: adult female fast muscle	pm3	pm3	Directional RNA libraries with PolyA mRNA enrichment	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	NextSeq 550	SRP226922	pm3.fastq.gz	fastq	2375673740.0	31258865.0	pm3.fastq.gz	0:76 1:0	A:515905187;C:691492864;G:615002075;T:553136912;N:136702	76	0	515905187	691492864	615002075	553136912	136702	SRX7731315	SRS6151722	SRA1043309	Nord Universitet\|Faculty of Biosciences and Aquaculture	Nord Universitet	1	0.95226		0.19981		0.88773		0.71487		76		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Norway	2020-02-15	Adult	Adult	Muscle	Muscular System
55309	55309	SRR11092480	SRX7731314	SRS6151721	SRP226922	PRJNA577226	Danio rerio breed:AB Transcriptome or Gene expression	PRJNA577226	Other	EpiGreen project investigated the nutrigenomic and nutriepigenomic effects of plant protein based diets on fish using zebrafish as a model. This study was also extended to a commercially important species Atlantic salmon. Ultimately this knowledge would be benefited for the industry to formulate sustainable diets based on terrestrial ingredients with properly addressing fish welfare concerns.	fast muscle	pea fishm2	strain:AB\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:laboratory\|age:6 month\|dev stage:adult\|sex:female\|tissue:fast muscle\|biomaterial provider:zebrafish lab Nord University\|birth location:zebrafish lab Nord University\|collected by:Anusha K.S.Dhanasiri Nord University\|collection date:2017 09\|health state:Healthy\|treatment:pea replicate2\|BioSampleModel:Model organism or animal	RNASeq of zebrafish: adult female fast muscle	pm2	pm2	Directional RNA libraries with PolyA mRNA enrichment	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	NextSeq 550	SRP226922	pm2.fastq.gz	fastq	2107982056.0	27736606.0	pm2.fastq.gz	0:76 1:0	A:538632968;C:505291675;G:484605729;T:579329857;N:121827	76	0	538632968	505291675	484605729	579329857	121827	SRX7731314	SRS6151721	SRA1043309	Nord Universitet\|Faculty of Biosciences and Aquaculture	Nord Universitet	1	0.96281		0.07736		0.81493		0.50221		76		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Norway	2020-02-15	Adult	Adult	Muscle	Muscular System
55310	55310	SRR11092481	SRX7731313	SRS6151720	SRP226922	PRJNA577226	Danio rerio breed:AB Transcriptome or Gene expression	PRJNA577226	Other	EpiGreen project investigated the nutrigenomic and nutriepigenomic effects of plant protein based diets on fish using zebrafish as a model. This study was also extended to a commercially important species Atlantic salmon. Ultimately this knowledge would be benefited for the industry to formulate sustainable diets based on terrestrial ingredients with properly addressing fish welfare concerns.	fast muscle	pea fishm1	strain:AB\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:laboratory\|age:6 month\|dev stage:adult\|sex:female\|tissue:fast muscle\|biomaterial provider:zebrafish lab Nord University\|birth location:zebrafish lab Nord University\|collected by:Anusha K.S.Dhanasiri Nord University\|collection date:2017 09\|health state:Healthy\|treatment:pea replicate1\|BioSampleModel:Model organism or animal	RNASeq of zebrafish: adult female fast muscle	pm1	pm1	Directional RNA libraries with PolyA mRNA enrichment	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	NextSeq 550	SRP226922	pm1.fastq.gz	fastq	2084337848.0	27425498.0	pm1.fastq.gz	0:76 1:0	A:525909797;C:504640406;G:488117980;T:565551059;N:118606	76	0	525909797	504640406	488117980	565551059	118606	SRX7731313	SRS6151720	SRA1043309	Nord Universitet\|Faculty of Biosciences and Aquaculture	Nord Universitet	1	0.96794		0.06893		0.83435		0.52321		76		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Norway	2020-02-15	Adult	Adult	Muscle	Muscular System
55311	55311	SRR11092482	SRX7731312	SRS6151719	SRP226922	PRJNA577226	Danio rerio breed:AB Transcriptome or Gene expression	PRJNA577226	Other	EpiGreen project investigated the nutrigenomic and nutriepigenomic effects of plant protein based diets on fish using zebrafish as a model. This study was also extended to a commercially important species Atlantic salmon. Ultimately this knowledge would be benefited for the industry to formulate sustainable diets based on terrestrial ingredients with properly addressing fish welfare concerns.	fast muscle	control fishm4	strain:AB\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:laboratory\|age:6 month\|dev stage:adult\|sex:female\|tissue:fast muscle\|biomaterial provider:zebrafish lab Nord University\|birth location:zebrafish lab Nord University\|collected by:Anusha K.S.Dhanasiri Nord University\|collection date:2017 09\|health state:Healthy\|treatment:control replicate4\|BioSampleModel:Model organism or animal	RNASeq of zebrafish: adult female fast muscle	cm4	cm4	Directional RNA libraries with PolyA mRNA enrichment	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	NextSeq 550	SRP226922	cm4.fastq.gz	fastq	2263882984.0	29787934.0	cm4.fastq.gz	0:76 1:0	A:562502146;C:560431696;G:534631946;T:606194211;N:122985	76	0	562502146	560431696	534631946	606194211	122985	SRX7731312	SRS6151719	SRA1043309	Nord Universitet\|Faculty of Biosciences and Aquaculture	Nord Universitet	1	0.96339		0.07486		0.82958		0.51707		76		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Norway	2020-02-15	Adult	Adult	Muscle	Muscular System
55312	55312	SRR11092483	SRX7731311	SRS6151718	SRP226922	PRJNA577226	Danio rerio breed:AB Transcriptome or Gene expression	PRJNA577226	Other	EpiGreen project investigated the nutrigenomic and nutriepigenomic effects of plant protein based diets on fish using zebrafish as a model. This study was also extended to a commercially important species Atlantic salmon. Ultimately this knowledge would be benefited for the industry to formulate sustainable diets based on terrestrial ingredients with properly addressing fish welfare concerns.	fast muscle	control fishm3	strain:AB\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:laboratory\|age:6 month\|dev stage:adult\|sex:female\|tissue:fast muscle\|biomaterial provider:zebrafish lab Nord University\|birth location:zebrafish lab Nord University\|collected by:Anusha K.S.Dhanasiri Nord University\|collection date:2017 09\|health state:Healthy\|treatment:control replicate3\|BioSampleModel:Model organism or animal	RNASeq of zebrafish: adult female fast muscle	cm3	cm3	Directional RNA libraries with PolyA mRNA enrichment	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	NextSeq 550	SRP226922	cm3.fastq.gz	fastq	2339617288.0	30784438.0	cm3.fastq.gz	0:76 1:0	A:622147797;C:548069187;G:533577104;T:635685680;N:137520	76	0	622147797	548069187	533577104	635685680	137520	SRX7731311	SRS6151718	SRA1043309	Nord Universitet\|Faculty of Biosciences and Aquaculture	Nord Universitet	1	0.94319		0.13419		0.81438		0.48694		76		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Norway	2020-02-15	Adult	Adult	Muscle	Muscular System
55313	55313	SRR11092484	SRX7731310	SRS6151717	SRP226922	PRJNA577226	Danio rerio breed:AB Transcriptome or Gene expression	PRJNA577226	Other	EpiGreen project investigated the nutrigenomic and nutriepigenomic effects of plant protein based diets on fish using zebrafish as a model. This study was also extended to a commercially important species Atlantic salmon. Ultimately this knowledge would be benefited for the industry to formulate sustainable diets based on terrestrial ingredients with properly addressing fish welfare concerns.	fast muscle	wheat fishm4	strain:AB\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:laboratory\|age:6 month\|dev stage:adult\|sex:female\|tissue:fast muscle\|biomaterial provider:zebrafish lab Nord University\|birth location:zebrafish lab Nord University\|collected by:Anusha K.S.Dhanasiri Nord University\|collection date:2017 09\|health state:Healthy\|treatment:wheat replicate4\|BioSampleModel:Model organism or animal	RNASeq of zebrafish: adult female fast muscle	wm4	wm4	Directional RNA libraries with PolyA mRNA enrichment	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	NextSeq 550	SRP226922	wm4.fastq.gz	fastq	1985403024.0	26123724.0	wm4.fastq.gz	0:76 1:0	A:498747962;C:482453313;G:462097859;T:541996279;N:107611	76	0	498747962	482453313	462097859	541996279	107611	SRX7731310	SRS6151717	SRA1043309	Nord Universitet\|Faculty of Biosciences and Aquaculture	Nord Universitet	1	0.96249		0.06026		0.8367		0.51944		76		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Norway	2020-02-15	Adult	Adult	Muscle	Muscular System
55314	55314	SRR11092485	SRX7731309	SRS6151716	SRP226922	PRJNA577226	Danio rerio breed:AB Transcriptome or Gene expression	PRJNA577226	Other	EpiGreen project investigated the nutrigenomic and nutriepigenomic effects of plant protein based diets on fish using zebrafish as a model. This study was also extended to a commercially important species Atlantic salmon. Ultimately this knowledge would be benefited for the industry to formulate sustainable diets based on terrestrial ingredients with properly addressing fish welfare concerns.	fast muscle	wheat fishm3	strain:AB\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:laboratory\|age:6 month\|dev stage:adult\|sex:female\|tissue:fast muscle\|biomaterial provider:zebrafish lab Nord University\|birth location:zebrafish lab Nord University\|collected by:Anusha K.S.Dhanasiri Nord University\|collection date:2017 09\|health state:Healthy\|treatment:wheat replicate3\|BioSampleModel:Model organism or animal	RNASeq of zebrafish: adult female fast muscle	wm3	wm3	Directional RNA libraries with PolyA mRNA enrichment	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	NextSeq 550	SRP226922	wm3.fastq.gz	fastq	1783867364.0	23471939.0	wm3.fastq.gz	0:76 1:0	A:450732711;C:435997554;G:411398964;T:485644552;N:93583	76	0	450732711	435997554	411398964	485644552	93583	SRX7731309	SRS6151716	SRA1043309	Nord Universitet\|Faculty of Biosciences and Aquaculture	Nord Universitet	1	0.95766		0.07889		0.83232		0.44279		76		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Norway	2020-02-15	Adult	Adult	Muscle	Muscular System
55315	55315	SRR11092486	SRX7731308	SRS6151715	SRP226922	PRJNA577226	Danio rerio breed:AB Transcriptome or Gene expression	PRJNA577226	Other	EpiGreen project investigated the nutrigenomic and nutriepigenomic effects of plant protein based diets on fish using zebrafish as a model. This study was also extended to a commercially important species Atlantic salmon. Ultimately this knowledge would be benefited for the industry to formulate sustainable diets based on terrestrial ingredients with properly addressing fish welfare concerns.	fast muscle	wheat fishm2	strain:AB\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:laboratory\|age:6 month\|dev stage:adult\|sex:female\|tissue:fast muscle\|biomaterial provider:zebrafish lab Nord University\|birth location:zebrafish lab Nord University\|collected by:Anusha K.S.Dhanasiri Nord University\|collection date:2017 09\|health state:Healthy\|treatment:wheat replicate2\|BioSampleModel:Model organism or animal	RNASeq of zebrafish: adult female fast muscle	wm2	wm2	Directional RNA libraries with PolyA mRNA enrichment	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	NextSeq 550	SRP226922	wm2.fastq.gz	fastq	2142927996.0	28196421.0	wm2.fastq.gz	0:76 1:0	A:546469493;C:512054313;G:496423605;T:587858713;N:121872	76	0	546469493	512054313	496423605	587858713	121872	SRX7731308	SRS6151715	SRA1043309	Nord Universitet\|Faculty of Biosciences and Aquaculture	Nord Universitet	1	0.96705		0.07616		0.83067		0.42744		76		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Norway	2020-02-15	Adult	Adult	Muscle	Muscular System
55316	55316	SRR11092487	SRX7731307	SRS6151714	SRP226922	PRJNA577226	Danio rerio breed:AB Transcriptome or Gene expression	PRJNA577226	Other	EpiGreen project investigated the nutrigenomic and nutriepigenomic effects of plant protein based diets on fish using zebrafish as a model. This study was also extended to a commercially important species Atlantic salmon. Ultimately this knowledge would be benefited for the industry to formulate sustainable diets based on terrestrial ingredients with properly addressing fish welfare concerns.	fast muscle	wheat fishm1	strain:AB\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:laboratory\|age:6 month\|dev stage:adult\|sex:female\|tissue:fast muscle\|biomaterial provider:zebrafish lab Nord University\|birth location:zebrafish lab Nord University\|collected by:Anusha K.S.Dhanasiri Nord University\|collection date:2017 09\|health state:Healthy\|treatment:wheat replicate1\|BioSampleModel:Model organism or animal	RNASeq of zebrafish: adult female fast muscle	wm1	wm1	Directional RNA libraries with PolyA mRNA enrichment	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	NextSeq 550	SRP226922	wm1.fastq.gz	fastq	2575961708.0	33894233.0	wm1.fastq.gz	0:76 1:0	A:715981531;C:567645285;G:554784963;T:737401160;N:148769	76	0	715981531	567645285	554784963	737401160	148769	SRX7731307	SRS6151714	SRA1043309	Nord Universitet\|Faculty of Biosciences and Aquaculture	Nord Universitet	1	0.94071		0.20468		0.81152		0.56581		76		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Norway	2020-02-15	Adult	Adult	Muscle	Muscular System
55317	55317	SRR11092488	SRX7731306	SRS6151713	SRP226922	PRJNA577226	Danio rerio breed:AB Transcriptome or Gene expression	PRJNA577226	Other	EpiGreen project investigated the nutrigenomic and nutriepigenomic effects of plant protein based diets on fish using zebrafish as a model. This study was also extended to a commercially important species Atlantic salmon. Ultimately this knowledge would be benefited for the industry to formulate sustainable diets based on terrestrial ingredients with properly addressing fish welfare concerns.	fast muscle	soy fishm6	strain:AB\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:laboratory\|age:6 month\|dev stage:adult\|sex:female\|tissue:fast muscle\|biomaterial provider:zebrafish lab Nord University\|birth location:zebrafish lab Nord University\|collected by:Anusha K.S.Dhanasiri Nord University\|collection date:2017 09\|health state:Healthy\|treatment:soy replicate6\|BioSampleModel:Model organism or animal	RNASeq of zebrafish: adult female fast muscle	sm6	sm6	Directional RNA libraries with PolyA mRNA enrichment	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	NextSeq 550	SRP226922	sm6.fastq.gz	fastq	1476347044.0	19425619.0	sm6.fastq.gz	0:76 1:0	A:370448815;C:361460384;G:341504966;T:402855002;N:77877	76	0	370448815	361460384	341504966	402855002	77877	SRX7731306	SRS6151713	SRA1043309	Nord Universitet\|Faculty of Biosciences and Aquaculture	Nord Universitet	1	0.96435		0.06773		0.83049		0.50288		76		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Norway	2020-02-15	Adult	Adult	Muscle	Muscular System
55318	55318	SRR11092489	SRX7731305	SRS6151712	SRP226922	PRJNA577226	Danio rerio breed:AB Transcriptome or Gene expression	PRJNA577226	Other	EpiGreen project investigated the nutrigenomic and nutriepigenomic effects of plant protein based diets on fish using zebrafish as a model. This study was also extended to a commercially important species Atlantic salmon. Ultimately this knowledge would be benefited for the industry to formulate sustainable diets based on terrestrial ingredients with properly addressing fish welfare concerns.	fast muscle	soy fishm5	strain:AB\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:laboratory\|age:6 month\|dev stage:adult\|sex:female\|tissue:fast muscle\|biomaterial provider:zebrafish lab Nord University\|birth location:zebrafish lab Nord University\|collected by:Anusha K.S.Dhanasiri Nord University\|collection date:2017 09\|health state:Healthy\|treatment:soy replicate5\|BioSampleModel:Model organism or animal	RNASeq of zebrafish: adult female fast muscle	sm5	sm5	Directional RNA libraries with PolyA mRNA enrichment	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	NextSeq 550	SRP226922	sm5.fastq.gz	fastq	2345044828.0	30855853.0	sm5.fastq.gz	0:76 1:0	A:531353998;C:664261429;G:591328698;T:557974032;N:126671	76	0	531353998	664261429	591328698	557974032	126671	SRX7731305	SRS6151712	SRA1043309	Nord Universitet\|Faculty of Biosciences and Aquaculture	Nord Universitet	1	0.96891		0.22929		0.87241		0.6487		76		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Norway	2020-02-15	Adult	Adult	Muscle	Muscular System
55319	55319	SRR11092490	SRX7731304	SRS6151711	SRP226922	PRJNA577226	Danio rerio breed:AB Transcriptome or Gene expression	PRJNA577226	Other	EpiGreen project investigated the nutrigenomic and nutriepigenomic effects of plant protein based diets on fish using zebrafish as a model. This study was also extended to a commercially important species Atlantic salmon. Ultimately this knowledge would be benefited for the industry to formulate sustainable diets based on terrestrial ingredients with properly addressing fish welfare concerns.	fast muscle	soy fishm4	strain:AB\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:laboratory\|age:6 month\|dev stage:adult\|sex:female\|tissue:fast muscle\|biomaterial provider:zebrafish lab Nord University\|birth location:zebrafish lab Nord University\|collected by:Anusha K.S.Dhanasiri Nord University\|collection date:2017 09\|health state:Healthy\|treatment:soy replicate4\|BioSampleModel:Model organism or animal	RNASeq of zebrafish: adult female fast muscle	sm4	sm4	Directional RNA libraries with PolyA mRNA enrichment	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	NextSeq 550	SRP226922	sm4.fastq.gz	fastq	1778757352.0	23404702.0	sm4.fastq.gz	0:76 1:0	A:434662664;C:444536223;G:412739251;T:486716909;N:102305	76	0	434662664	444536223	412739251	486716909	102305	SRX7731304	SRS6151711	SRA1043309	Nord Universitet\|Faculty of Biosciences and Aquaculture	Nord Universitet	1	0.964		0.05953		0.82688		0.52373		76		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Norway	2020-02-15	Adult	Adult	Muscle	Muscular System
55320	55320	SRR11092491	SRX7731303	SRS6151710	SRP226922	PRJNA577226	Danio rerio breed:AB Transcriptome or Gene expression	PRJNA577226	Other	EpiGreen project investigated the nutrigenomic and nutriepigenomic effects of plant protein based diets on fish using zebrafish as a model. This study was also extended to a commercially important species Atlantic salmon. Ultimately this knowledge would be benefited for the industry to formulate sustainable diets based on terrestrial ingredients with properly addressing fish welfare concerns.	fast muscle	soy fishm3	strain:AB\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:laboratory\|age:6 month\|dev stage:adult\|sex:female\|tissue:fast muscle\|biomaterial provider:zebrafish lab Nord University\|birth location:zebrafish lab Nord University\|collected by:Anusha K.S.Dhanasiri Nord University\|collection date:2017 09\|health state:Healthy\|treatment:soy replicate3\|BioSampleModel:Model organism or animal	RNASeq of zebrafish: adult female fast muscle	sm3	sm3	Directional RNA libraries with PolyA mRNA enrichment	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	NextSeq 550	SRP226922	sm3.fastq.gz	fastq	2326985252.0	30618227.0	sm3.fastq.gz	0:76 1:0	A:622471400;C:533921392;G:517712738;T:652745448;N:134274	76	0	622471400	533921392	517712738	652745448	134274	SRX7731303	SRS6151710	SRA1043309	Nord Universitet\|Faculty of Biosciences and Aquaculture	Nord Universitet	1	0.93846		0.16305		0.82806		0.48567		76		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Norway	2020-02-15	Adult	Adult	Muscle	Muscular System
55321	55321	SRR11092492	SRX7731302	SRS6151709	SRP226922	PRJNA577226	Danio rerio breed:AB Transcriptome or Gene expression	PRJNA577226	Other	EpiGreen project investigated the nutrigenomic and nutriepigenomic effects of plant protein based diets on fish using zebrafish as a model. This study was also extended to a commercially important species Atlantic salmon. Ultimately this knowledge would be benefited for the industry to formulate sustainable diets based on terrestrial ingredients with properly addressing fish welfare concerns.	fast muscle	soy fishm2	strain:AB\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:laboratory\|age:6 month\|dev stage:adult\|sex:female\|tissue:fast muscle\|biomaterial provider:zebrafish lab Nord University\|birth location:zebrafish lab Nord University\|collected by:Anusha K.S.Dhanasiri Nord University\|collection date:2017 09\|health state:Healthy\|treatment:soy replicate2\|BioSampleModel:Model organism or animal	RNASeq of zebrafish: adult female fast muscle	sm2	sm2	Directional RNA libraries with PolyA mRNA enrichment	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	NextSeq 550	SRP226922	sm2.fastq.gz	fastq	2663144044.0	35041369.0	sm2.fastq.gz	0:76 1:0	A:745638132;C:580730674;G:574626393;T:761991195;N:157650	76	0	745638132	580730674	574626393	761991195	157650	SRX7731302	SRS6151709	SRA1043309	Nord Universitet\|Faculty of Biosciences and Aquaculture	Nord Universitet	1	0.94534		0.16721		0.80543		0.52603		76		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Norway	2020-02-15	Adult	Adult	Muscle	Muscular System
55322	55322	SRR11092493	SRX7731301	SRS6151708	SRP226922	PRJNA577226	Danio rerio breed:AB Transcriptome or Gene expression	PRJNA577226	Other	EpiGreen project investigated the nutrigenomic and nutriepigenomic effects of plant protein based diets on fish using zebrafish as a model. This study was also extended to a commercially important species Atlantic salmon. Ultimately this knowledge would be benefited for the industry to formulate sustainable diets based on terrestrial ingredients with properly addressing fish welfare concerns.	fast muscle	soy fishm1	strain:AB\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:laboratory\|age:6 month\|dev stage:adult\|sex:female\|tissue:fast muscle\|biomaterial provider:zebrafish lab Nord University\|birth location:zebrafish lab Nord University\|collected by:Anusha K.S.Dhanasiri Nord University\|collection date:2017 09\|health state:Healthy\|treatment:soy replicate1\|BioSampleModel:Model organism or animal	RNASeq of zebrafish: adult female fast muscle	sm1	sm1	Directional RNA libraries with PolyA mRNA enrichment	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	NextSeq 550	SRP226922	sm1.fastq.gz	fastq	2098096660.0	27606535.0	sm1.fastq.gz	0:76 1:0	A:534110731;C:503795785;G:487753223;T:572316060;N:120861	76	0	534110731	503795785	487753223	572316060	120861	SRX7731301	SRS6151708	SRA1043309	Nord Universitet\|Faculty of Biosciences and Aquaculture	Nord Universitet	1	0.96111		0.08283		0.83045		0.49701		76		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Norway	2020-02-15	Adult	Adult	Muscle	Muscular System
55323	55323	SRR11092494	SRX7731300	SRS6151707	SRP226922	PRJNA577226	Danio rerio breed:AB Transcriptome or Gene expression	PRJNA577226	Other	EpiGreen project investigated the nutrigenomic and nutriepigenomic effects of plant protein based diets on fish using zebrafish as a model. This study was also extended to a commercially important species Atlantic salmon. Ultimately this knowledge would be benefited for the industry to formulate sustainable diets based on terrestrial ingredients with properly addressing fish welfare concerns.	fast muscle	control fishm2	strain:AB\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:laboratory\|age:6 month\|dev stage:adult\|sex:female\|tissue:fast muscle\|biomaterial provider:zebrafish lab Nord University\|birth location:zebrafish lab Nord University\|collected by:Anusha K.S.Dhanasiri Nord University\|collection date:2017 09\|health state:Healthy\|treatment:control replicate2\|BioSampleModel:Model organism or animal	RNASeq of zebrafish: adult female fast muscle	cm2	cm2	Directional RNA libraries with PolyA mRNA enrichment	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	NextSeq 550	SRP226922	cm2.fastq.gz	fastq	1629748180.0	21444055.0	cm2.fastq.gz	0:76 1:0	A:425645289;C:390438273;G:386811828;T:426758550;N:94240	76	0	425645289	390438273	386811828	426758550	94240	SRX7731300	SRS6151707	SRA1043309	Nord Universitet\|Faculty of Biosciences and Aquaculture	Nord Universitet	1	0.8056		0.11506		0.8312		0.49373		76		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Norway	2020-02-15	Adult	Adult	Muscle	Muscular System
55324	55324	SRR11092495	SRX7731299	SRS6151706	SRP226922	PRJNA577226	Danio rerio breed:AB Transcriptome or Gene expression	PRJNA577226	Other	EpiGreen project investigated the nutrigenomic and nutriepigenomic effects of plant protein based diets on fish using zebrafish as a model. This study was also extended to a commercially important species Atlantic salmon. Ultimately this knowledge would be benefited for the industry to formulate sustainable diets based on terrestrial ingredients with properly addressing fish welfare concerns.	fast muscle	control fishm1	strain:AB\|isolate:not collected\|breed:not collected\|cultivar:not collected\|ecotype:laboratory\|age:6 month\|dev stage:adult\|sex:female\|tissue:fast muscle\|biomaterial provider:zebrafish lab Nord University\|birth location:zebrafish lab Nord University\|collected by:Anusha K.S.Dhanasiri Nord University\|collection date:2017 09\|health state:Healthy\|treatment:control replicate1\|BioSampleModel:Model organism or animal	RNASeq of zebrafish: adult female fast muscle	cm1	cm1	Directional RNA libraries with PolyA mRNA enrichment	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	NextSeq 550	SRP226922	cm1.fastq.gz	fastq	1527761804.0	20102129.0	cm1.fastq.gz	0:76 1:0	A:384002739;C:377219918;G:356966053;T:409485001;N:88093	76	0	384002739	377219918	356966053	409485001	88093	SRX7731299	SRS6151706	SRA1043309	Nord Universitet\|Faculty of Biosciences and Aquaculture	Nord Universitet	1	0.95997		0.07644		0.83554		0.51372		76		B		usable mapping rate	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	Norway	2020-02-15	Adult	Adult	Muscle	Muscular System
72652	72652	SRR23036877	SRX18991135	SRS16411628	SRP416839	PRJNA922057	Danio rerio Raw sequence reads	PRJNA922057	Whole Genome Sequencing	normal RNA seq of Danio rerio female muscle		NFM 3	strain:AB\|age:26 mpf of NMN fish 3\|BioSampleModel:Model organism or animal	RNAseq of muscle	s803	s803	normal RNA Seq of muscle	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP416839	NFM3_1.fq.gz NFM3_2.fq.gz	fastq fastq	8397732300.0	27992441.0	NFM3 1.fq.gz	0:150 1:150	A:2220565446;C:2001421432;G:1998051892;T:2177474234;N:219296	150	150	2220565446	2001421432	1998051892	2177474234	219296	SRX18991135	SRS16411628	SRA1572325	university of Macau\|faculty of health science	university of Macau	2	0.96459	0.96418	0.03541	0.03492	0.79166	0.79121	0.52178	0.52025	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2023-01-10	Adult	Adult	Muscle	Muscular System
72653	72653	SRR23036878	SRX18991134	SRS16411627	SRP416839	PRJNA922057	Danio rerio Raw sequence reads	PRJNA922057	Whole Genome Sequencing	normal RNA seq of Danio rerio female muscle		NFM 2	strain:AB\|age:26 mpf of NMN fish 2\|BioSampleModel:Model organism or animal	RNAseq of muscle	s802	s802	normal RNA Seq of muscle	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP416839	NFM2_1.fq.gz NFM2_2.fq.gz	fastq fastq	6501604500.0	21672015.0	NFM2 1.fq.gz	0:150 1:150	A:1723308499;C:1541453592;G:1543023084;T:1693798229;N:21096	150	150	1723308499	1541453592	1543023084	1693798229	21096	SRX18991134	SRS16411627	SRA1572325	university of Macau\|faculty of health science	university of Macau	2	0.96116	0.96044	0.04017	0.04033	0.7666	0.76712	0.5327	0.51987	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2023-01-10	Adult	Adult	Muscle	Muscular System
72654	72654	SRR23036879	SRX18991133	SRS16411626	SRP416839	PRJNA922057	Danio rerio Raw sequence reads	PRJNA922057	Whole Genome Sequencing	normal RNA seq of Danio rerio female muscle		NFM 1	strain:AB\|age:26 mpf of NMN fish 1\|BioSampleModel:Model organism or animal	RNAseq of muscle	s801	s801	normal RNA Seq of muscle	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP416839	NFM1_1.fq.gz NFM1_2.fq.gz	fastq fastq	7081333800.0	23604446.0	NFM1 1.fq.gz	0:150 1:150	A:1901951058;C:1665551541;G:1644429904;T:1869272170;N:129127	150	150	1901951058	1665551541	1644429904	1869272170	129127	SRX18991133	SRS16411626	SRA1572325	university of Macau\|faculty of health science	university of Macau	2	0.96442	0.96415	0.04454	0.04446	0.75493	0.75584	0.51869	0.52832	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2023-01-10	Adult	Adult	Muscle	Muscular System
72655	72655	SRR23036880	SRX18991132	SRS16411625	SRP416839	PRJNA922057	Danio rerio Raw sequence reads	PRJNA922057	Whole Genome Sequencing	normal RNA seq of Danio rerio female muscle		AFM 3	strain:AB\|age:26 mpf of Aged fish 3\|BioSampleModel:Model organism or animal	RNAseq of muscle	s800	s800	normal RNA Seq of muscle	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP416839	AFM3_1.fq.gz AFM3_2.fq.gz	fastq fastq	7154871300.0	23849571.0	AFM3 1.fq.gz	0:150 1:150	A:1927832700;C:1679297228;G:1657943955;T:1889668827;N:128590	150	150	1927832700	1679297228	1657943955	1889668827	128590	SRX18991132	SRS16411625	SRA1572325	university of Macau\|faculty of health science	university of Macau	2	0.96635	0.96581	0.0451	0.04507	0.77118	0.77285	0.50294	0.50373	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2023-01-10	Adult	Adult	Muscle	Muscular System
72656	72656	SRR23036881	SRX18991131	SRS16411624	SRP416839	PRJNA922057	Danio rerio Raw sequence reads	PRJNA922057	Whole Genome Sequencing	normal RNA seq of Danio rerio female muscle		AFM 2	strain:AB\|age:26 mpf of Aged fish 2\|BioSampleModel:Model organism or animal	RNAseq of muscle	s799	s799	normal RNA Seq of muscle	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP416839	AFM2_1.fq.gz AFM2_2.fq.gz	fastq fastq	6480175200.0	21600584.0	AFM2 1.fq.gz	0:150 1:150	A:1713331460;C:1546623954;G:1536148465;T:1683946251;N:125070	150	150	1713331460	1546623954	1536148465	1683946251	125070	SRX18991131	SRS16411624	SRA1572325	university of Macau\|faculty of health science	university of Macau	2	0.96535	0.96488	0.04149	0.04128	0.79275	0.79318	0.50356	0.50154	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2023-01-10	Adult	Adult	Muscle	Muscular System
72657	72657	SRR23036882	SRX18991130	SRS16411623	SRP416839	PRJNA922057	Danio rerio Raw sequence reads	PRJNA922057	Whole Genome Sequencing	normal RNA seq of Danio rerio female muscle		AFM 1	strain:AB\|age:26 mpf of Aged fish 1\|BioSampleModel:Model organism or animal	RNAseq of muscle	s798	s798	normal RNA Seq of muscle	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP416839	AFM1_1.fq.gz AFM1_2.fq.gz	fastq fastq	6295940700.0	20986469.0	AFM1 1.fq.gz	0:150 1:150	A:1691146259;C:1480427698;G:1469111132;T:1655142365;N:113246	150	150	1691146259	1480427698	1469111132	1655142365	113246	SRX18991130	SRS16411623	SRA1572325	university of Macau\|faculty of health science	university of Macau	2	0.9692	0.96886	0.03546	0.03532	0.79328	0.79375	0.46699	0.46857	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2023-01-10	Adult	Adult	Muscle	Muscular System
72658	72658	SRR23036883	SRX18991129	SRS16411622	SRP416839	PRJNA922057	Danio rerio Raw sequence reads	PRJNA922057	Whole Genome Sequencing	normal RNA seq of Danio rerio female muscle		YFM 3	strain:AB\|age:4 mpf of young fish 3\|BioSampleModel:Model organism or animal	RNAseq of muscle	s797	s797	normal RNA Seq of muscle	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP416839	YFM3_1.fq.gz YFM3_2.fq.gz	fastq fastq	6749895300.0	22499651.0	YFM3 1.fq.gz	0:150 1:150	A:1798541651;C:1593018727;G:1587162725;T:1771067072;N:105125	150	150	1798541651	1593018727	1587162725	1771067072	105125	SRX18991129	SRS16411622	SRA1572325	university of Macau\|faculty of health science	university of Macau	2	0.95851	0.95868	0.05157	0.05164	0.78431	0.78393	0.56439	0.56646	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2023-01-10	Adult	Adult	Muscle	Muscular System
72659	72659	SRR23036884	SRX18991128	SRS16411621	SRP416839	PRJNA922057	Danio rerio Raw sequence reads	PRJNA922057	Whole Genome Sequencing	normal RNA seq of Danio rerio female muscle		YFM 2	strain:AB\|age:4 mpf of young fish 2\|BioSampleModel:Model organism or animal	RNAseq of muscle	s796	s796	normal RNA Seq of muscle	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP416839	YFM2_1.fq.gz YFM2_2.fq.gz	fastq fastq	8174977500.0	27249925.0	YFM2 1.fq.gz	0:150 1:150	A:2172990986;C:1934605933;G:1929840977;T:2137409668;N:129936	150	150	2172990986	1934605933	1929840977	2137409668	129936	SRX18991128	SRS16411621	SRA1572325	university of Macau\|faculty of health science	university of Macau	2	0.95502	0.95505	0.05196	0.05173	0.77114	0.77118	0.53759	0.54189	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2023-01-10	Adult	Adult	Muscle	Muscular System
72660	72660	SRR23036885	SRX18991127	SRS16411620	SRP416839	PRJNA922057	Danio rerio Raw sequence reads	PRJNA922057	Whole Genome Sequencing	normal RNA seq of Danio rerio female muscle		YFM 1	strain:AB\|age:4 mpf of young fish 1\|BioSampleModel:Model organism or animal	RNAseq of muscle	s795	s795	normal RNA Seq of muscle	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP416839	YFM1_1.fq.gz YFM1_2.fq.gz	fastq fastq	6937235700.0	23124119.0	YFM1 1.fq.gz	0:150 1:150	A:1847246655;C:1638505321;G:1634173480;T:1817202700;N:107544	150	150	1847246655	1638505321	1634173480	1817202700	107544	SRX18991127	SRS16411620	SRA1572325	university of Macau\|faculty of health science	university of Macau	2	0.95659	0.95671	0.05088	0.05058	0.75519	0.75503	0.52441	0.54159	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2023-01-10	Adult	Adult	Muscle	Muscular System

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;