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run_metadata

36 rows where experiment.library_selection = "Oligo-dT", experiment.platform = "BGISEQ" and tissue_curation = "Whole Organism"

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tissue_curation_coarse 1

tissue_curation 1

  • Whole Organism · 36 ✖

technology 1

experiment.platform 1

  • BGISEQ · 36 ✖

experiment.library_strategy 1

experiment.library_source 1

experiment.library_selection 1

  • Oligo-dT · 36 ✖

experiment.library_layout 1

devstage_curation_coarse 1

devstage_curation 1

Link rowid ▼ run.accession experiment.accession sample.accession study.accession bioproject study.title study.alias study.type study.abstract study.attributes study.PMIDs sample.description sample.title sample.alias sample.centername sample.attributes GEOsample.title GEOsample.dataprocessing GEOsample.source GEOsample.treatmentprotocol GEOsample.extractprotocol GEOsample.growthprotocol GEOsample.characteristics GEOsample.accession experiment.title experiment.alias experiment.library_name experiment.design_description experiment.library_construction_protocol experiment.attributes experiment.library_strategy experiment.library_source experiment.library_selection experiment.library_layout experiment.platform experiment.instrument_model experiment.spot_descriptor experiment.study_ref run.title run.attributes run.filename run.semantic_name run.total_bases run.total_spots run.alias run.read_lengths run.base_counts run.r1_length run.r2_length run.r3_length run.r4_length run.Acount run.Ccount run.Gcount run.Tcount run.Ncount run.experiment run.pool_member submission.accession submission.srasource submission.bioprojectsource seqdetective.n_mates seqdetective.mapping_rate.mate1 seqdetective.mapping_rate.mate2 seqdetective.nofeature_rate.mate1 seqdetective.nofeature_rate.mate2 seqdetective.sparsity.mate1 seqdetective.sparsity.mate2 seqdetective.pos_strand_rate.mate1 seqdetective.pos_strand_rate.mate2 seqdetective.readlen.mate1 seqdetective.readlen.mate2 seqdetective.judgement.mate1 seqdetective.judgement.mate2 seqdetective.judgement.reason platform_family instrument_generation read_bias selection_class prep_kit sc_or_bulk tech_class technology tech_variant submission.bioprojectsource.country earliest_date devstage_curation devstage_curation_coarse tissue_curation tissue_curation_coarse
65984 65984 SRR15859821 SRX12150937 SRS10130028 SRP336743 PRJNA760976 Danio rerio strain:AB Transcriptome or Gene expression PRJNA760976 Transcriptome Analysis we investigated the effects of progestins on gonadal differentiation and sex determination in zebrafish     levonorgestrel treatment at high concentration treatment LNG H 1 AN   strain:not collected2|isolate:whole fish13|breed:not collected|cultivar:not applicable3|ecotype:not applicable4|age:4 weeks|dev stage:not applicable5|sex:missing|tissue:whole fish|replicate:'replicate = biological replicate 1'|BioSampleModel:Model organism or animal                 LNG H 1 BM BM zebraifsh exposure     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP336743     50_1_R1.clean.fq.gz 50_1_R2.clean.fq.gz fastq fastq 6850889266.0 22893917.0 50 1 R1.clean.fq.gz 0:149.83 1:149.42 A:1908972876;C:1556853849;G:1559240564;T:1825804841;N:17136 149 149     1908972876 1556853849 1559240564 1825804841 17136 SRX12150937 SRS10130028 SRA1291484 South China Normal University|School of Environment South China Normal University 2 0.93957 0.92386 0.09467 0.08944 0.66582 0.67142 0.50349 0.499 150 150 B B biological fallback assumption bgi bgi unknown poly_a unknown bulk unknown unknown   China 2021-09-12 Larval Larval Whole Organism All anatomical structures
65985 65985 SRR15859822 SRX12150936 SRS10130027 SRP336743 PRJNA760976 Danio rerio strain:AB Transcriptome or Gene expression PRJNA760976 Transcriptome Analysis we investigated the effects of progestins on gonadal differentiation and sex determination in zebrafish     levonorgestrel treatment at low concentration treatment LNG L 4 M   strain:not collected2|isolate:whole fish12|breed:not collected|cultivar:not applicable3|ecotype:not applicable4|age:4 weeks|dev stage:not applicable5|sex:missing|tissue:whole fish|replicate:'replicate = biological replicate 4'|BioSampleModel:Model organism or animal                 LNG L 4 BL BL zebraifsh exposure     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP336743     5_4_R1.clean.fq.gz 5_4_R2.clean.fq.gz fastq fastq 6757301758.0 22579367.0 5 4 R1.clean.fq.gz 0:149.83 1:149.44 A:1886236851;C:1526321374;G:1529138861;T:1815587663;N:17009 149 149     1886236851 1526321374 1529138861 1815587663 17009 SRX12150936 SRS10130027 SRA1291484 South China Normal University|School of Environment South China Normal University 2 0.93955 0.92322 0.09955 0.0937 0.66612 0.67056 0.4936 0.50296 150 150 B B biological fallback assumption bgi bgi unknown poly_a unknown bulk unknown unknown   China 2021-09-12 Larval Larval Whole Organism All anatomical structures
65986 65986 SRR15859823 SRX12150935 SRS10130026 SRP336743 PRJNA760976 Danio rerio strain:AB Transcriptome or Gene expression PRJNA760976 Transcriptome Analysis we investigated the effects of progestins on gonadal differentiation and sex determination in zebrafish     levonorgestrel treatment at low concentration treatment LNG L 3 AL   strain:not collected2|isolate:whole fish11|breed:not collected|cultivar:not applicable3|ecotype:not applicable4|age:4 weeks|dev stage:not applicable5|sex:missing|tissue:whole fish|replicate:'replicate = biological replicate 3 prime|BioSampleModel:Model organism or animal                 LNG L 3 BK BK zebraifsh exposure     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP336743     5_3_R1.clean.fq.gz 5_3_R2.clean.fq.gz fastq fastq 6942028867.0 23178890.0 5 3 R1.clean.fq.gz 0:149.82 1:149.68 A:1895507796;C:1573477638;G:1599422601;T:1873160988;N:459844 149 149     1895507796 1573477638 1599422601 1873160988 459844 SRX12150935 SRS10130026 SRA1291484 South China Normal University|School of Environment South China Normal University 2 0.92261 0.9213 0.10308 0.10394 0.67298 0.67677 0.50615 0.5026 150 145 B B biological fallback assumption bgi bgi unknown poly_a unknown bulk unknown unknown   China 2021-09-12 Larval Larval Whole Organism All anatomical structures
65987 65987 SRR15859824 SRX12150934 SRS10130025 SRP336743 PRJNA760976 Danio rerio strain:AB Transcriptome or Gene expression PRJNA760976 Transcriptome Analysis we investigated the effects of progestins on gonadal differentiation and sex determination in zebrafish     Solvent control SC2 AC   strain:not collected2|isolate:whole fish2|breed:not collected|cultivar:not applicable3|ecotype:not applicable4|age:4 weeks|dev stage:not applicable5|sex:missing|tissue:whole fish|replicate:'replicate = biological replicate 2'|BioSampleModel:Model organism or animal                 SC2 BB BB zebraifsh exposure     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP336743     SC_2_R1.clean.fq.gz SC_2_R2.clean.fq.gz fastq fastq 6847074418.0 22905359.0 SC 2 R1.clean.fq.gz 0:149.58 1:149.35 A:1835075664;C:1586631096;G:1607651961;T:1817247855;N:467842 149 149     1835075664 1586631096 1607651961 1817247855 467842 SRX12150934 SRS10130025 SRA1291484 South China Normal University|School of Environment South China Normal University 2 0.93172 0.93195 0.07691 0.0771 0.67265 0.67665 0.48862 0.49579 150 150 B B biological fallback assumption bgi bgi unknown poly_a unknown bulk unknown unknown   China 2021-09-12 Larval Larval Whole Organism All anatomical structures
65988 65988 SRR15859825 SRX12150933 SRS10130024 SRP336743 PRJNA760976 Danio rerio strain:AB Transcriptome or Gene expression PRJNA760976 Transcriptome Analysis we investigated the effects of progestins on gonadal differentiation and sex determination in zebrafish     Solvent control SC1 AB   strain:not collected2|isolate:whole fish1|breed:not collected|cultivar:not applicable3|ecotype:not applicable4|age:4 weeks|dev stage:not applicable5|sex:missing|tissue:whole fish|replicate:'replicate = biological replicate 1'|BioSampleModel:Model organism or animal                 SC1 BA BA zebraifsh exposure     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP336743     SC_1_R1.clean.fq.gz SC_1_R2.clean.fq.gz fastq fastq 7101595814.0 23743270.0 SC 1 R1.clean.fq.gz 0:149.65 1:149.45 A:1888007422;C:1656304946;G:1683234514;T:1873563589;N:485343 149 149     1888007422 1656304946 1683234514 1873563589 485343 SRX12150933 SRS10130024 SRA1291484 South China Normal University|School of Environment South China Normal University 2 0.93193 0.93408 0.08101 0.08156 0.6744 0.67785 0.49761 0.49038 150 149 B B biological fallback assumption bgi bgi unknown poly_a unknown bulk unknown unknown   China 2021-09-12 Larval Larval Whole Organism All anatomical structures
65989 65989 SRR15859826 SRX12150932 SRS10130023 SRP336743 PRJNA760976 Danio rerio strain:AB Transcriptome or Gene expression PRJNA760976 Transcriptome Analysis we investigated the effects of progestins on gonadal differentiation and sex determination in zebrafish     levonorgestrel treatment at low concentration treatment LNG L 2 AK   strain:not collected2|isolate:whole fish10|breed:not collected|cultivar:not applicable3|ecotype:not applicable4|age:4 weeks|dev stage:not applicable5|sex:missing|tissue:whole fish|replicate:'replicate = biological replicate 2'|BioSampleModel:Model organism or animal                 LNG L 2 BJ BJ zebraifsh exposure     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP336743     5_2_R1.clean.fq.gz 5_2_R2.clean.fq.gz fastq fastq 6978116268.0 23316955.0 5 2 R1.clean.fq.gz 0:149.72 1:149.55 A:1877413088;C:1609547451;G:1632121199;T:1858563731;N:470799 149 149     1877413088 1609547451 1632121199 1858563731 470799 SRX12150932 SRS10130023 SRA1291484 South China Normal University|School of Environment South China Normal University 2 0.93086 0.93049 0.08702 0.08712 0.68357 0.68844 0.49793 0.48668 150 150 B B biological fallback assumption bgi bgi unknown poly_a unknown bulk unknown unknown   China 2021-09-12 Larval Larval Whole Organism All anatomical structures
65990 65990 SRR15859827 SRX12150931 SRS10130022 SRP336743 PRJNA760976 Danio rerio strain:AB Transcriptome or Gene expression PRJNA760976 Transcriptome Analysis we investigated the effects of progestins on gonadal differentiation and sex determination in zebrafish     levonorgestrel treatment at low concentration treatment LNG L 1 AJ   strain:not collected2|isolate:whole fish9|breed:not collected|cultivar:not applicable3|ecotype:not applicable4|age:4 weeks|dev stage:not applicable5|sex:missing|tissue:whole fish|replicate:'replicate = biological replicate 1'|BioSampleModel:Model organism or animal                 LNG L 1 BI BI zebraifsh exposure     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP336743     5_1_R1.clean.fq.gz 5_1_R2.clean.fq.gz fastq fastq 6306082896.0 21075245.0 5 1 R1.clean.fq.gz 0:149.70 1:149.52 A:1679788198;C:1469939151;G:1489873755;T:1666053801;N:427991 149 149     1679788198 1469939151 1489873755 1666053801 427991 SRX12150931 SRS10130022 SRA1291484 South China Normal University|School of Environment South China Normal University 2 0.93145 0.93206 0.08123 0.08188 0.67951 0.68432 0.48499 0.48763 150 150 B B biological fallback assumption bgi bgi unknown poly_a unknown bulk unknown unknown   China 2021-09-12 Larval Larval Whole Organism All anatomical structures
65991 65991 SRR15859828 SRX12150930 SRS10130021 SRP336743 PRJNA760976 Danio rerio strain:AB Transcriptome or Gene expression PRJNA760976 Transcriptome Analysis we investigated the effects of progestins on gonadal differentiation and sex determination in zebrafish     dydrogesterone treatment DDG 4 AI   strain:not collected2|isolate:whole fish8|breed:not collected|cultivar:not applicable3|ecotype:not applicable4|age:4 weeks|dev stage:not applicable5|sex:missing|tissue:whole fish|replicate:'replicate = biological replicate 4'|BioSampleModel:Model organism or animal                 DDG 4 BH BH zebraifsh exposure     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP336743     100_4_R1.clean.fq.gz 100_4_R2.clean.fq.gz fastq fastq 7014679884.0 23437449.0 100 4 R1.clean.fq.gz 0:149.72 1:149.57 A:1882114669;C:1625037935;G:1641102139;T:1865959279;N:465862 149 149     1882114669 1625037935 1641102139 1865959279 465862 SRX12150930 SRS10130021 SRA1291484 South China Normal University|School of Environment South China Normal University 2 0.93236 0.93264 0.08797 0.08919 0.67574 0.67965 0.50279 0.495 150 150 B B biological fallback assumption bgi bgi unknown poly_a unknown bulk unknown unknown   China 2021-09-12 Larval Larval Whole Organism All anatomical structures
65992 65992 SRR15859829 SRX12150929 SRS10130019 SRP336743 PRJNA760976 Danio rerio strain:AB Transcriptome or Gene expression PRJNA760976 Transcriptome Analysis we investigated the effects of progestins on gonadal differentiation and sex determination in zebrafish     dydrogesterone treatment DDG 3 AH   strain:not collected2|isolate:whole fish7|breed:not collected|cultivar:not applicable3|ecotype:not applicable4|age:4 weeks|dev stage:not applicable5|sex:missing|tissue:whole fish|replicate:'replicate = biological replicate 3 prime|BioSampleModel:Model organism or animal                 DDG 3 BG BG zebraifsh exposure     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP336743     100_3_R1.clean.fq.gz 100_3_R2.clean.fq.gz fastq fastq 7000790030.0 23371313.0 100 3 R1.clean.fq.gz 0:149.83 1:149.72 A:1906942833;C:1592634521;G:1609492258;T:1891245267;N:475151 149 149     1906942833 1592634521 1609492258 1891245267 475151 SRX12150929 SRS10130019 SRA1291484 South China Normal University|School of Environment South China Normal University 2 0.92801 0.92781 0.09747 0.09744 0.66517 0.66776 0.50246 0.49531 150 150 B B biological fallback assumption bgi bgi unknown poly_a unknown bulk unknown unknown   China 2021-09-12 Larval Larval Whole Organism All anatomical structures
65993 65993 SRR15859830 SRX12150928 SRS10130020 SRP336743 PRJNA760976 Danio rerio strain:AB Transcriptome or Gene expression PRJNA760976 Transcriptome Analysis we investigated the effects of progestins on gonadal differentiation and sex determination in zebrafish     dydrogesterone treatment DDG 2 AG   strain:not collected2|isolate:whole fish6|breed:not collected|cultivar:not applicable3|ecotype:not applicable4|age:4 weeks|dev stage:not applicable5|sex:missing|tissue:whole fish|replicate:'replicate = biological replicate 2'|BioSampleModel:Model organism or animal                 DDG 2 BF BF zebraifsh exposure     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP336743     100_2_R1.clean.fq.gz 100_2_R2.clean.fq.gz fastq fastq 7075813310.0 23625836.0 100 2 R1.clean.fq.gz 0:149.82 1:149.68 A:1918796036;C:1619755625;G:1637664383;T:1899135516;N:461750 149 149     1918796036 1619755625 1637664383 1899135516 461750 SRX12150928 SRS10130020 SRA1291484 South China Normal University|School of Environment South China Normal University 2 0.92935 0.92868 0.08886 0.08912 0.65717 0.6621 0.4843 0.49415 150 150 B B biological fallback assumption bgi bgi unknown poly_a unknown bulk unknown unknown   China 2021-09-12 Larval Larval Whole Organism All anatomical structures
65994 65994 SRR15859831 SRX12150927 SRS10130018 SRP336743 PRJNA760976 Danio rerio strain:AB Transcriptome or Gene expression PRJNA760976 Transcriptome Analysis we investigated the effects of progestins on gonadal differentiation and sex determination in zebrafish     dydrogesterone treatment DDG 1 AF   strain:not collected2|isolate:whole fish5|breed:not collected|cultivar:not applicable3|ecotype:not applicable4|age:4 weeks|dev stage:not applicable5|sex:missing|tissue:whole fish|replicate:'replicate = biological replicate 1'|BioSampleModel:Model organism or animal                 DDG 1 BE BE zebraifsh exposure     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP336743     100_1_R1.clean.fq.gz 100_1_R2.clean.fq.gz fastq fastq 6740898004.0 22511996.0 100 1 R1.clean.fq.gz 0:149.79 1:149.65 A:1828418830;C:1542362815;G:1564205385;T:1805464983;N:445991 149 149     1828418830 1542362815 1564205385 1805464983 445991 SRX12150927 SRS10130018 SRA1291484 South China Normal University|School of Environment South China Normal University 2 0.92893 0.92836 0.08577 0.08614 0.67639 0.68077 0.48573 0.49544 150 150 B B biological fallback assumption bgi bgi unknown poly_a unknown bulk unknown unknown   China 2021-09-12 Larval Larval Whole Organism All anatomical structures
65995 65995 SRR15859832 SRX12150926 SRS10130016 SRP336743 PRJNA760976 Danio rerio strain:AB Transcriptome or Gene expression PRJNA760976 Transcriptome Analysis we investigated the effects of progestins on gonadal differentiation and sex determination in zebrafish     Solvent control SC4 AE   strain:not collected2|isolate:whole fish4|breed:not collected|cultivar:not applicable3|ecotype:not applicable4|age:4 weeks|dev stage:not applicable5|sex:missing|tissue:whole fish|replicate:'replicate = biological replicate 4'|BioSampleModel:Model organism or animal                 SC4 BD BD zebraifsh exposure     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP336743     SC_4_R1.clean.fq.gz SC_4_R2.clean.fq.gz fastq fastq 6051468288.0 20209797.0 SC 4 R1.clean.fq.gz 0:149.80 1:149.63 A:1652651735;C:1373191643;G:1392749062;T:1632474997;N:400851 149 149     1652651735 1373191643 1392749062 1632474997 400851 SRX12150926 SRS10130016 SRA1291484 South China Normal University|School of Environment South China Normal University 2 0.92672 0.92501 0.09038 0.09121 0.66259 0.66565 0.49636 0.49698 150 150 B B biological fallback assumption bgi bgi unknown poly_a unknown bulk unknown unknown   China 2021-09-12 Larval Larval Whole Organism All anatomical structures
65996 65996 SRR15859833 SRX12150925 SRS10130017 SRP336743 PRJNA760976 Danio rerio strain:AB Transcriptome or Gene expression PRJNA760976 Transcriptome Analysis we investigated the effects of progestins on gonadal differentiation and sex determination in zebrafish     Levonorgestrel at high concentration and dydrogesterone mixturestreatment DDG+LNG H 1 AY   strain:not collected2|isolate:whole fish24|breed:not collected|cultivar:not applicable3|ecotype:not applicable4|age:4 weeks|dev stage:not applicable5|sex:missing|tissue:whole fish|replicate:'replicate = biological replicate 4'|BioSampleModel:Model organism or animal                 DDG+LNG H 1 BX BX zebraifsh exposure     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP336743     100_50_4_R1.clean.fq.gz 100_50_4_R2.clean.fq.gz fastq fastq 6861007764.0 22938186.0 100 50 4 R1.clean.fq.gz 0:149.76 1:149.35 A:1881600852;C:1578987219;G:1582313999;T:1818088269;N:17425 149 149     1881600852 1578987219 1582313999 1818088269 17425 SRX12150925 SRS10130017 SRA1291484 South China Normal University|School of Environment South China Normal University 2 0.93777 0.92424 0.09796 0.0931 0.66182 0.66746 0.49608 0.49787 150 150 B B biological fallback assumption bgi bgi unknown poly_a unknown bulk unknown unknown   China 2021-09-12 Larval Larval Whole Organism All anatomical structures
65997 65997 SRR15859834 SRX12150924 SRS10130015 SRP336743 PRJNA760976 Danio rerio strain:AB Transcriptome or Gene expression PRJNA760976 Transcriptome Analysis we investigated the effects of progestins on gonadal differentiation and sex determination in zebrafish     Levonorgestrel at high concentration and dydrogesterone mixtures treatment DDG+LNG H 1 AX   strain:not collected2|isolate:whole fish23|breed:not collected|cultivar:not applicable3|ecotype:not applicable4|age:4 weeks|dev stage:not applicable5|sex:missing|tissue:whole fish|replicate:'replicate = biological replicate 3 prime|BioSampleModel:Model organism or animal                 DDG+LNG H 1 BW BW zebraifsh exposure     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP336743     100_50_3_R1.clean.fq.gz 100_50_3_R2.clean.fq.gz fastq fastq 6448167527.0 21546554.0 100 50 3 R1.clean.fq.gz 0:149.84 1:149.43 A:1776900923;C:1483436670;G:1478517308;T:1709296399;N:16227 149 149     1776900923 1483436670 1478517308 1709296399 16227 SRX12150924 SRS10130015 SRA1291484 South China Normal University|School of Environment South China Normal University 2 0.94114 0.92751 0.08812 0.0842 0.66557 0.67052 0.49525 0.49796 150 150 B B biological fallback assumption bgi bgi unknown poly_a unknown bulk unknown unknown   China 2021-09-12 Larval Larval Whole Organism All anatomical structures
65998 65998 SRR15859835 SRX12150923 SRS10130014 SRP336743 PRJNA760976 Danio rerio strain:AB Transcriptome or Gene expression PRJNA760976 Transcriptome Analysis we investigated the effects of progestins on gonadal differentiation and sex determination in zebrafish     Levonorgestrel at high concentration and dydrogesterone mixtures treatment DDG+LNG H 1 AW   strain:not collected2|isolate:whole fish22|breed:not collected|cultivar:not applicable3|ecotype:not applicable4|age:4 weeks|dev stage:not applicable5|sex:missing|tissue:whole fish|replicate:'replicate = biological replicate 2'|BioSampleModel:Model organism or animal                 DDG+LNG H 1 BV BV zebraifsh exposure     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP336743     100_50_2_R1.clean.fq.gz 100_50_2_R2.clean.fq.gz fastq fastq 6097050612.0 20374795.0 100 50 2 R1.clean.fq.gz 0:149.83 1:149.42 A:1697937652;C:1387399999;G:1387536896;T:1624160680;N:15385 149 149     1697937652 1387399999 1387536896 1624160680 15385 SRX12150923 SRS10130014 SRA1291484 South China Normal University|School of Environment South China Normal University 2 0.93921 0.92457 0.09156 0.08703 0.677 0.68268 0.51381 0.51338 150 150 B B biological fallback assumption bgi bgi unknown poly_a unknown bulk unknown unknown   China 2021-09-12 Larval Larval Whole Organism All anatomical structures
65999 65999 SRR15859836 SRX12150922 SRS10130013 SRP336743 PRJNA760976 Danio rerio strain:AB Transcriptome or Gene expression PRJNA760976 Transcriptome Analysis we investigated the effects of progestins on gonadal differentiation and sex determination in zebrafish     Levonorgestrel at high concentration and dydrogesterone mixtures treatment DDG+LNG H 1 AV   strain:not collected2|isolate:whole fish21|breed:not collected|cultivar:not applicable3|ecotype:not applicable4|age:4 weeks|dev stage:not applicable5|sex:missing|tissue:whole fish|replicate:'replicate = biological replicate 1'|BioSampleModel:Model organism or animal                 DDG+LNG H 1 BU BU zebraifsh exposure     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP336743     100_50_1_R1.clean.fq.gz 100_50_1_R2.clean.fq.gz fastq fastq 6200464490.0 20718210.0 100 50 1 R1.clean.fq.gz 0:149.84 1:149.44 A:1722773998;C:1411958803;G:1410364088;T:1655351787;N:15814 149 149     1722773998 1411958803 1410364088 1655351787 15814 SRX12150922 SRS10130013 SRA1291484 South China Normal University|School of Environment South China Normal University 2 0.94019 0.92317 0.09428 0.08799 0.66192 0.66813 0.50339 0.50384 150 150 B B biological fallback assumption bgi bgi unknown poly_a unknown bulk unknown unknown   China 2021-09-12 Larval Larval Whole Organism All anatomical structures
66000 66000 SRR15859837 SRX12150921 SRS10130012 SRP336743 PRJNA760976 Danio rerio strain:AB Transcriptome or Gene expression PRJNA760976 Transcriptome Analysis we investigated the effects of progestins on gonadal differentiation and sex determination in zebrafish     Solvent control SC3 AD   strain:not collected2|isolate:whole fish3|breed:not collected|cultivar:not applicable3|ecotype:not applicable4|age:4 weeks|dev stage:not applicable5|sex:missing|tissue:whole fish|replicate:'replicate = biological replicate 3 prime|BioSampleModel:Model organism or animal                 SC3 BC BC zebraifsh exposure     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP336743     SC_3_R1.clean.fq.gz SC_3_R2.clean.fq.gz fastq fastq 6744019219.0 22522868.0 SC 3 R1.clean.fq.gz 0:149.81 1:149.62 A:1832736009;C:1540439892;G:1560536404;T:1809859936;N:446978 149 149     1832736009 1540439892 1560536404 1809859936 446978 SRX12150921 SRS10130012 SRA1291484 South China Normal University|School of Environment South China Normal University 2 0.92908 0.92831 0.08407 0.08413 0.66748 0.67332 0.49151 0.50363 150 150 B B biological fallback assumption bgi bgi unknown poly_a unknown bulk unknown unknown   China 2021-09-12 Larval Larval Whole Organism All anatomical structures
66001 66001 SRR15859838 SRX12150920 SRS10130011 SRP336743 PRJNA760976 Danio rerio strain:AB Transcriptome or Gene expression PRJNA760976 Transcriptome Analysis we investigated the effects of progestins on gonadal differentiation and sex determination in zebrafish     Levonorgestrel at low concentration and dydrogesterone mixtures treatment DDG+LNG L 4 AU   strain:not collected2|isolate:whole fish20|breed:not collected|cultivar:not applicable3|ecotype:not applicable4|age:4 weeks|dev stage:not applicable5|sex:missing|tissue:whole fish|replicate:'replicate = biological replicate 4'|BioSampleModel:Model organism or animal                 DDG+LNG L 4 BT BT zebraifsh exposure     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP336743     100_5_4_R1.clean.fq.gz 100_5_4_R2.clean.fq.gz fastq fastq 6698715338.0 22386760.0 100 5 4 R1.clean.fq.gz 0:149.82 1:149.41 A:1854944489;C:1532319316;G:1533554376;T:1777880466;N:16691 149 149     1854944489 1532319316 1533554376 1777880466 16691 SRX12150920 SRS10130011 SRA1291484 South China Normal University|School of Environment South China Normal University 2 0.93948 0.92423 0.09198 0.08752 0.66967 0.67513 0.49914 0.49616 150 150 B B biological fallback assumption bgi bgi unknown poly_a unknown bulk unknown unknown   China 2021-09-12 Larval Larval Whole Organism All anatomical structures
66002 66002 SRR15859839 SRX12150919 SRS10130010 SRP336743 PRJNA760976 Danio rerio strain:AB Transcriptome or Gene expression PRJNA760976 Transcriptome Analysis we investigated the effects of progestins on gonadal differentiation and sex determination in zebrafish     Levonorgestrel at low concentration and dydrogesterone mixtures treatment DDG+LNG L 3 AT   strain:not collected2|isolate:whole fish19|breed:not collected|cultivar:not applicable3|ecotype:not applicable4|age:4 weeks|dev stage:not applicable5|sex:missing|tissue:whole fish|replicate:'replicate = biological replicate 3 prime|BioSampleModel:Model organism or animal                 DDG+LNG L 3 BS BS zebraifsh exposure     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP336743     100_5_3_R1.clean.fq.gz 100_5_3_R2.clean.fq.gz fastq fastq 6731263096.0 22494392.0 100 5 3 R1.clean.fq.gz 0:149.82 1:149.42 A:1853865687;C:1546635036;G:1549005691;T:1781740007;N:16675 149 149     1853865687 1546635036 1549005691 1781740007 16675 SRX12150919 SRS10130010 SRA1291484 South China Normal University|School of Environment South China Normal University 2 0.94161 0.92699 0.09368 0.08881 0.67146 0.67671 0.49075 0.4916 150 150 B B biological fallback assumption bgi bgi unknown poly_a unknown bulk unknown unknown   China 2021-09-12 Larval Larval Whole Organism All anatomical structures
66003 66003 SRR15859840 SRX12150918 SRS10130009 SRP336743 PRJNA760976 Danio rerio strain:AB Transcriptome or Gene expression PRJNA760976 Transcriptome Analysis we investigated the effects of progestins on gonadal differentiation and sex determination in zebrafish     Levonorgestrel at low concentration and dydrogesterone mixtures treatment DDG+LNG L 2 AS   strain:not collected2|isolate:whole fish18|breed:not collected|cultivar:not applicable3|ecotype:not applicable4|age:4 weeks|dev stage:not applicable5|sex:missing|tissue:whole fish|replicate:'replicate = biological replicate 2'|BioSampleModel:Model organism or animal                 DDG+LNG L 2 BR BR zebraifsh exposure     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP336743     100_5_2_R1.clean.fq.gz 100_5_2_R2.clean.fq.gz fastq fastq 6856677730.0 22942302.0 100 5 2 R1.clean.fq.gz 0:149.63 1:149.23 A:1861833177;C:1593702006;G:1601437245;T:1799688067;N:17235 149 149     1861833177 1593702006 1601437245 1799688067 17235 SRX12150918 SRS10130009 SRA1291484 South China Normal University|School of Environment South China Normal University 2 0.94226 0.93085 0.08471 0.08039 0.67677 0.68191 0.48927 0.47969 150 148 B B biological fallback assumption bgi bgi unknown poly_a unknown bulk unknown unknown   China 2021-09-12 Larval Larval Whole Organism All anatomical structures
66004 66004 SRR15859841 SRX12150917 SRS10130007 SRP336743 PRJNA760976 Danio rerio strain:AB Transcriptome or Gene expression PRJNA760976 Transcriptome Analysis we investigated the effects of progestins on gonadal differentiation and sex determination in zebrafish     Levonorgestrel at low concentration and dydrogesterone mixtures treatment DDG+LNG L 1 AR   strain:not collected2|isolate:whole fish17|breed:not collected|cultivar:not applicable3|ecotype:not applicable4|age:4 weeks|dev stage:not applicable5|sex:missing|tissue:whole fish|replicate:'replicate = biological replicate 1'|BioSampleModel:Model organism or animal                 DDG+LNG L 1 BQ BQ zebraifsh exposure     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP336743     100_5_1_R1.clean.fq.gz 100_5_1_R2.clean.fq.gz fastq fastq 6734596961.0 22519168.0 100 5 1 R1.clean.fq.gz 0:149.72 1:149.34 A:1835515639;C:1562058332;G:1561380426;T:1775625709;N:16855 149 149     1835515639 1562058332 1561380426 1775625709 16855 SRX12150917 SRS10130007 SRA1291484 South China Normal University|School of Environment South China Normal University 2 0.94108 0.92768 0.09123 0.08716 0.66967 0.6747 0.50584 0.50347 150 150 B B biological fallback assumption bgi bgi unknown poly_a unknown bulk unknown unknown   China 2021-09-12 Larval Larval Whole Organism All anatomical structures
66005 66005 SRR15859842 SRX12150916 SRS10130006 SRP336743 PRJNA760976 Danio rerio strain:AB Transcriptome or Gene expression PRJNA760976 Transcriptome Analysis we investigated the effects of progestins on gonadal differentiation and sex determination in zebrafish     levonorgestrel treatment at high concentration treatment LNG H 4 AQ   strain:not collected2|isolate:whole fish16|breed:not collected|cultivar:not applicable3|ecotype:not applicable4|age:4 weeks|dev stage:not applicable5|sex:missing|tissue:whole fish|replicate:'replicate = biological replicate 4'|BioSampleModel:Model organism or animal                 LNG H 4 BP BP zebraifsh exposure     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP336743     50_4_R1.clean.fq.gz 50_4_R2.clean.fq.gz fastq fastq 7033955938.0 23502039.0 50 4 R1.clean.fq.gz 0:149.84 1:149.46 A:1939982949;C:1612770444;G:1610988374;T:1870196531;N:17640 149 149     1939982949 1612770444 1610988374 1870196531 17640 SRX12150916 SRS10130006 SRA1291484 South China Normal University|School of Environment South China Normal University 2 0.94099 0.92749 0.09644 0.09215 0.67261 0.67838 0.49766 0.49584 150 149 B B biological fallback assumption bgi bgi unknown poly_a unknown bulk unknown unknown   China 2021-09-12 Larval Larval Whole Organism All anatomical structures
66006 66006 SRR15859843 SRX12150915 SRS10130008 SRP336743 PRJNA760976 Danio rerio strain:AB Transcriptome or Gene expression PRJNA760976 Transcriptome Analysis we investigated the effects of progestins on gonadal differentiation and sex determination in zebrafish     levonorgestrel treatment at high concentration treatment LNG H 3 AP   strain:not collected2|isolate:whole fish15|breed:not collected|cultivar:not applicable3|ecotype:not applicable4|age:4 weeks|dev stage:not applicable5|sex:missing|tissue:whole fish|replicate:'replicate = biological replicate 3 prime|BioSampleModel:Model organism or animal                 LNG H 3 BO BO zebraifsh exposure     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP336743     50_3_R1.clean.fq.gz 50_3_R2.clean.fq.gz fastq fastq 5819952570.0 19444342.0 50 3 R1.clean.fq.gz 0:149.86 1:149.46 A:1615559082;C:1328350353;G:1325535770;T:1550492661;N:14704 149 149     1615559082 1328350353 1325535770 1550492661 14704 SRX12150915 SRS10130008 SRA1291484 South China Normal University|School of Environment South China Normal University 2 0.9397 0.92495 0.09375 0.08838 0.669 0.67338 0.50535 0.5146 150 150 B B biological fallback assumption bgi bgi unknown poly_a unknown bulk unknown unknown   China 2021-09-12 Larval Larval Whole Organism All anatomical structures
66007 66007 SRR15859844 SRX12150914 SRS10130005 SRP336743 PRJNA760976 Danio rerio strain:AB Transcriptome or Gene expression PRJNA760976 Transcriptome Analysis we investigated the effects of progestins on gonadal differentiation and sex determination in zebrafish     levonorgestrel treatment at high concentration treatment LNG H 2 AO   strain:not collected2|isolate:whole fish14|breed:not collected|cultivar:not applicable3|ecotype:not applicable4|age:4 weeks|dev stage:not applicable5|sex:missing|tissue:whole fish|replicate:'replicate = biological replicate 2'|BioSampleModel:Model organism or animal                 LNG H 2 BN BN zebraifsh exposure     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP336743     50_2_R1.clean.fq.gz 50_2_R2.clean.fq.gz fastq fastq 5888497480.0 19673249.0 50 2 R1.clean.fq.gz 0:149.84 1:149.47 A:1638307115;C:1337036459;G:1335389572;T:1577749137;N:15197 149 149     1638307115 1337036459 1335389572 1577749137 15197 SRX12150914 SRS10130005 SRA1291484 South China Normal University|School of Environment South China Normal University 2 0.9395 0.92471 0.09382 0.08964 0.66785 0.67144 0.50388 0.5077 150 150 B B biological fallback assumption bgi bgi unknown poly_a unknown bulk unknown unknown   China 2021-09-12 Larval Larval Whole Organism All anatomical structures
67884 67884 SRR17868935 SRX14028691 SRS11864778 SRP358022 PRJNA793391 Effects of acute exposure to nano silver on zebrafish larvae PRJNA793391 Other Sliver nanoparticles AgNPs are widely used for industry agriculture and medicals which potentially result in adverse effects for human health and aquatic environment. In this present study we investigated the illumine high throughput RNA sequencing revealed the transcriptome profiling of zebrafish larvae post AgNPs treatment for 72 h.         C4 1   strain:danio rerio AgNPs4|breed:zebrafish10|age:3 day|sex:pooled male and female|tissue:fish|BioSampleModel:Model organism or animal                 DANIO RERIO 4 1 AG 4 1 AG 4 1 treatment7     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP358022     C4-1_1.fq.gz C4-1_2.fq.gz fastq fastq 6830916900.0 45539446.0 C4 1 1.fq.gz 0:150 1:150 A:2011586443;C:1405775454;G:1388504965;T:2024992696;N:57342 150 150     2011586443 1405775454 1388504965 2024992696 57342 SRX14028691 SRS11864778 SRA1350965 Center for Neuroscience|Shantou university Center for Neuroscience 1 0.92344   0.21929   0.71043   0.46315   150   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   United States 2022-02-03 Larval Larval Whole Organism All anatomical structures
67885 67885 SRR17868936 SRX14028690 SRS11864777 SRP358022 PRJNA793391 Effects of acute exposure to nano silver on zebrafish larvae PRJNA793391 Other Sliver nanoparticles AgNPs are widely used for industry agriculture and medicals which potentially result in adverse effects for human health and aquatic environment. In this present study we investigated the illumine high throughput RNA sequencing revealed the transcriptome profiling of zebrafish larvae post AgNPs treatment for 72 h.         C2 3   strain:danio rerio AgNPs2|breed:zebrafish9|age:3 day|sex:pooled male and female|tissue:fish|BioSampleModel:Model organism or animal                 DANIO RERIO 2 3 AG 2 3 AG 2 3 treatment6     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP358022     C2-3_1.fq.gz C2-3_2.fq.gz fastq fastq 6782959200.0 45219728.0 C2 3 1.fq.gz 0:150 1:150 A:1949560199;C:1443524899;G:1428814233;T:1960921903;N:137966 150 150     1949560199 1443524899 1428814233 1960921903 137966 SRX14028690 SRS11864777 SRA1350965 Center for Neuroscience|Shantou university Center for Neuroscience 1 0.93181   0.17739   0.6927   0.50528   150   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   United States 2022-02-03 Larval Larval Whole Organism All anatomical structures
67886 67886 SRR17868937 SRX14028689 SRS11864776 SRP358022 PRJNA793391 Effects of acute exposure to nano silver on zebrafish larvae PRJNA793391 Other Sliver nanoparticles AgNPs are widely used for industry agriculture and medicals which potentially result in adverse effects for human health and aquatic environment. In this present study we investigated the illumine high throughput RNA sequencing revealed the transcriptome profiling of zebrafish larvae post AgNPs treatment for 72 h.         C2 2   strain:danio rerio AgNPs2|breed:zebrafish8|age:3 day|sex:pooled male and female|tissue:fish|BioSampleModel:Model organism or animal                 DANIO RERIO 2 2 AG 2 2 AG 2 2 treatment5     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP358022     C2-2_1.fq.gz C2-2_2.fq.gz fastq fastq 6817863300.0 45452422.0 C2 2 1.fq.gz 0:150 1:150 A:1964890519;C:1446826412;G:1428708103;T:1977297439;N:140827 150 150     1964890519 1446826412 1428708103 1977297439 140827 SRX14028689 SRS11864776 SRA1350965 Center for Neuroscience|Shantou university Center for Neuroscience 1 0.93045   0.17846   0.69116   0.48565   150   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   United States 2022-02-03 Larval Larval Whole Organism All anatomical structures
67887 67887 SRR17868938 SRX14028688 SRS11864774 SRP358022 PRJNA793391 Effects of acute exposure to nano silver on zebrafish larvae PRJNA793391 Other Sliver nanoparticles AgNPs are widely used for industry agriculture and medicals which potentially result in adverse effects for human health and aquatic environment. In this present study we investigated the illumine high throughput RNA sequencing revealed the transcriptome profiling of zebrafish larvae post AgNPs treatment for 72 h.         C2 1   strain:danio rerio AgNPs2|breed:zebrafish7|age:3 day|sex:pooled male and female|tissue:fish|BioSampleModel:Model organism or animal                 DANIO RERIO 2 1 AG 2 1 AG 2 1 treatment4     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP358022     C2-1_1.fq.gz C2-1_2.fq.gz fastq fastq 6795911700.0 45306078.0 C2 1 1.fq.gz 0:150 1:150 A:1910936263;C:1486390531;G:1471463982;T:1927036309;N:84615 150 150     1910936263 1486390531 1471463982 1927036309 84615 SRX14028688 SRS11864774 SRA1350965 Center for Neuroscience|Shantou university Center for Neuroscience 1 0.93638   0.14847   0.6814   0.46864   150   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   United States 2022-02-03 Larval Larval Whole Organism All anatomical structures
67888 67888 SRR17868939 SRX14028687 SRS11864775 SRP358022 PRJNA793391 Effects of acute exposure to nano silver on zebrafish larvae PRJNA793391 Other Sliver nanoparticles AgNPs are widely used for industry agriculture and medicals which potentially result in adverse effects for human health and aquatic environment. In this present study we investigated the illumine high throughput RNA sequencing revealed the transcriptome profiling of zebrafish larvae post AgNPs treatment for 72 h.         C1 3   strain:danio rerio AgNPs1|breed:zebrafish6|age:3 day|sex:pooled male and female|tissue:fish|BioSampleModel:Model organism or animal                 DANIO RERIO 1 3 AG 1 3 AG 1 3 treatment3     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP358022     C1-3_1.fq.gz C1-3_2.fq.gz fastq fastq 6788960100.0 45259734.0 C1 3 1.fq.gz 0:150 1:150 A:1883226902;C:1511814926;G:1492397960;T:1901504019;N:16293 150 150     1883226902 1511814926 1492397960 1901504019 16293 SRX14028687 SRS11864775 SRA1350965 Center for Neuroscience|Shantou university Center for Neuroscience 1 0.94253   0.12673   0.67623   0.49289   150   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   United States 2022-02-03 Larval Larval Whole Organism All anatomical structures
67889 67889 SRR17868940 SRX14028686 SRS11864773 SRP358022 PRJNA793391 Effects of acute exposure to nano silver on zebrafish larvae PRJNA793391 Other Sliver nanoparticles AgNPs are widely used for industry agriculture and medicals which potentially result in adverse effects for human health and aquatic environment. In this present study we investigated the illumine high throughput RNA sequencing revealed the transcriptome profiling of zebrafish larvae post AgNPs treatment for 72 h.         C1 2   strain:danio rerio AgNPs1|breed:zebrafish5|age:3 day|sex:pooled male and female|tissue:fish|BioSampleModel:Model organism or animal                 DANIO RERIO 1 2 AG 1 2 AG 1 2 treatment2     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP358022     C1-2_1.fq.gz C1-2_2.fq.gz fastq fastq 6781043100.0 45206954.0 C1 2 1.fq.gz 0:150 1:150 A:1890710017;C:1500221789;G:1482973456;T:1907121929;N:15909 150 150     1890710017 1500221789 1482973456 1907121929 15909 SRX14028686 SRS11864773 SRA1350965 Center for Neuroscience|Shantou university Center for Neuroscience 1 0.93834   0.13288   0.67777   0.49269   150   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   United States 2022-02-03 Larval Larval Whole Organism All anatomical structures
67890 67890 SRR17868941 SRX14028685 SRS11864772 SRP358022 PRJNA793391 Effects of acute exposure to nano silver on zebrafish larvae PRJNA793391 Other Sliver nanoparticles AgNPs are widely used for industry agriculture and medicals which potentially result in adverse effects for human health and aquatic environment. In this present study we investigated the illumine high throughput RNA sequencing revealed the transcriptome profiling of zebrafish larvae post AgNPs treatment for 72 h.         C1 1   strain:danio rerio AgNPs1|breed:zebrafish4|age:3 day|sex:pooled male and female|tissue:fish|BioSampleModel:Model organism or animal                 DANIO RERIO 1 1 AG 1 1 AG 1 1 treatment1     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP358022     C1-1_1.fq.gz C1-1_2.fq.gz fastq fastq 6760511100.0 45070074.0 C1 1 1.fq.gz 0:150 1:150 A:1875451292;C:1504527737;G:1489983693;T:1890505493;N:42885 150 150     1875451292 1504527737 1489983693 1890505493 42885 SRX14028685 SRS11864772 SRA1350965 Center for Neuroscience|Shantou university Center for Neuroscience 1 0.94039   0.1298   0.68071   0.49309   150   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   United States 2022-02-03 Larval Larval Whole Organism All anatomical structures
67891 67891 SRR17868942 SRX14028684 SRS11864771 SRP358022 PRJNA793391 Effects of acute exposure to nano silver on zebrafish larvae PRJNA793391 Other Sliver nanoparticles AgNPs are widely used for industry agriculture and medicals which potentially result in adverse effects for human health and aquatic environment. In this present study we investigated the illumine high throughput RNA sequencing revealed the transcriptome profiling of zebrafish larvae post AgNPs treatment for 72 h.         WT3   strain:danio rerio con3|breed:zebrafish3|age:3 day|sex:pooled male and female|tissue:fish|BioSampleModel:Model organism or animal                 DANIO RERIO 0 3 WT 0 3 WT 0 3 control3     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP358022     WT3_1.fq.gz WT3_2.fq.gz fastq fastq 6735369300.0 44902462.0 WT3 1.fq.gz 0:150 1:150 A:1853105410;C:1513363689;G:1496503080;T:1872187115;N:210006 150 150     1853105410 1513363689 1496503080 1872187115 210006 SRX14028684 SRS11864771 SRA1350965 Center for Neuroscience|Shantou university Center for Neuroscience 1 0.94653   0.11174   0.69116   0.49069   150   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   United States 2022-02-03 Larval Larval Whole Organism All anatomical structures
67892 67892 SRR17868943 SRX14028683 SRS11864768 SRP358022 PRJNA793391 Effects of acute exposure to nano silver on zebrafish larvae PRJNA793391 Other Sliver nanoparticles AgNPs are widely used for industry agriculture and medicals which potentially result in adverse effects for human health and aquatic environment. In this present study we investigated the illumine high throughput RNA sequencing revealed the transcriptome profiling of zebrafish larvae post AgNPs treatment for 72 h.         C4 3   strain:danio rerio AgNPs4|breed:zebrafish12|age:3 day|sex:pooled male and female|tissue:fish|BioSampleModel:Model organism or animal                 DANIO RERIO 4 3 AG 4 3 AG 4 3 treatment9     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP358022     C4-3_1.fq.gz C4-3_2.fq.gz fastq fastq 7066801800.0 47112012.0 C4 3 1.fq.gz 0:150 1:150 A:2079705050;C:1456973666;G:1436564156;T:2093467396;N:91532 150 150     2079705050 1456973666 1436564156 2093467396 91532 SRX14028683 SRS11864768 SRA1350965 Center for Neuroscience|Shantou university Center for Neuroscience 1 0.92264   0.21457   0.70236   0.52765   150   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   United States 2022-02-03 Larval Larval Whole Organism All anatomical structures
67893 67893 SRR17868944 SRX14028682 SRS11864769 SRP358022 PRJNA793391 Effects of acute exposure to nano silver on zebrafish larvae PRJNA793391 Other Sliver nanoparticles AgNPs are widely used for industry agriculture and medicals which potentially result in adverse effects for human health and aquatic environment. In this present study we investigated the illumine high throughput RNA sequencing revealed the transcriptome profiling of zebrafish larvae post AgNPs treatment for 72 h.         C4 2   strain:danio rerio AgNPs4|breed:zebrafish11|age:3 day|sex:pooled male and female|tissue:fish|BioSampleModel:Model organism or animal                 DANIO RERIO 4 2 AG 4 2 AG 4 2 treatment8     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP358022     C4-2_1.fq.gz C4-2_2.fq.gz fastq fastq 6813742200.0 45424948.0 C4 2 1.fq.gz 0:150 1:150 A:1969847243;C:1438590202;G:1418612399;T:1986677730;N:14626 150 150     1969847243 1438590202 1418612399 1986677730 14626 SRX14028682 SRS11864769 SRA1350965 Center for Neuroscience|Shantou university Center for Neuroscience 1 0.92909   0.18109   0.69029   0.50538   150   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   United States 2022-02-03 Larval Larval Whole Organism All anatomical structures
67894 67894 SRR17868945 SRX14028681 SRS11864770 SRP358022 PRJNA793391 Effects of acute exposure to nano silver on zebrafish larvae PRJNA793391 Other Sliver nanoparticles AgNPs are widely used for industry agriculture and medicals which potentially result in adverse effects for human health and aquatic environment. In this present study we investigated the illumine high throughput RNA sequencing revealed the transcriptome profiling of zebrafish larvae post AgNPs treatment for 72 h.         WT2   strain:danio rerio con2|breed:zebrafish2|age:3 day|sex:pooled male and female|tissue:fish|BioSampleModel:Model organism or animal                 DANIO RERIO 0 2 WT 0 2 WT 0 2 control2     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP358022     WT2_1.fq.gz WT2_2.fq.gz fastq fastq 6760866900.0 45072446.0 WT2 1.fq.gz 0:150 1:150 A:1893259201;C:1485992528;G:1471666738;T:1909709705;N:238728 150 150     1893259201 1485992528 1471666738 1909709705 238728 SRX14028681 SRS11864770 SRA1350965 Center for Neuroscience|Shantou university Center for Neuroscience 1 0.94132   0.13956   0.68596   0.48309   150   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   United States 2022-02-03 Larval Larval Whole Organism All anatomical structures
67895 67895 SRR17868946 SRX14028680 SRS11864767 SRP358022 PRJNA793391 Effects of acute exposure to nano silver on zebrafish larvae PRJNA793391 Other Sliver nanoparticles AgNPs are widely used for industry agriculture and medicals which potentially result in adverse effects for human health and aquatic environment. In this present study we investigated the illumine high throughput RNA sequencing revealed the transcriptome profiling of zebrafish larvae post AgNPs treatment for 72 h.         WT1   strain:danio rerio con1|breed:zebrafish1|age:3 day|sex:pooled male and female|tissue:fish|BioSampleModel:Model organism or animal                 DANIO RERIO 0 1 WT 0 1 WT 0 1 control1     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP358022     WT1_1.fq.gz WT1_2.fq.gz fastq fastq 7003449300.0 46689662.0 WT1 1.fq.gz 0:150 1:150 A:1946491315;C:1554368011;G:1539879203;T:1962458586;N:252185 150 150     1946491315 1554368011 1539879203 1962458586 252185 SRX14028680 SRS11864767 SRA1350965 Center for Neuroscience|Shantou university Center for Neuroscience 1 0.94236   0.12627   0.68369   0.49408   150   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   United States 2022-02-03 Larval Larval Whole Organism All anatomical structures

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;