RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

run_metadata

18 rows where experiment.library_selection = "Oligo-dT", experiment.platform = "BGISEQ" and tissue_curation = "Brain"

✎ View and edit SQL

This data as json, CSV (advanced)

tissue_curation_coarse 1

tissue_curation 1

  • Brain · 18 ✖

technology 1

experiment.platform 1

  • BGISEQ · 18 ✖

experiment.library_strategy 1

experiment.library_source 1

experiment.library_selection 1

  • Oligo-dT · 18 ✖

experiment.library_layout 1

devstage_curation_coarse 1

devstage_curation 1

Link rowid ▼ run.accession experiment.accession sample.accession study.accession bioproject study.title study.alias study.type study.abstract study.attributes study.PMIDs sample.description sample.title sample.alias sample.centername sample.attributes GEOsample.title GEOsample.dataprocessing GEOsample.source GEOsample.treatmentprotocol GEOsample.extractprotocol GEOsample.growthprotocol GEOsample.characteristics GEOsample.accession experiment.title experiment.alias experiment.library_name experiment.design_description experiment.library_construction_protocol experiment.attributes experiment.library_strategy experiment.library_source experiment.library_selection experiment.library_layout experiment.platform experiment.instrument_model experiment.spot_descriptor experiment.study_ref run.title run.attributes run.filename run.semantic_name run.total_bases run.total_spots run.alias run.read_lengths run.base_counts run.r1_length run.r2_length run.r3_length run.r4_length run.Acount run.Ccount run.Gcount run.Tcount run.Ncount run.experiment run.pool_member submission.accession submission.srasource submission.bioprojectsource seqdetective.n_mates seqdetective.mapping_rate.mate1 seqdetective.mapping_rate.mate2 seqdetective.nofeature_rate.mate1 seqdetective.nofeature_rate.mate2 seqdetective.sparsity.mate1 seqdetective.sparsity.mate2 seqdetective.pos_strand_rate.mate1 seqdetective.pos_strand_rate.mate2 seqdetective.readlen.mate1 seqdetective.readlen.mate2 seqdetective.judgement.mate1 seqdetective.judgement.mate2 seqdetective.judgement.reason platform_family instrument_generation read_bias selection_class prep_kit sc_or_bulk tech_class technology tech_variant submission.bioprojectsource.country earliest_date devstage_curation devstage_curation_coarse tissue_curation tissue_curation_coarse
65944 65944 SRR15700565 SRX11996477 SRS10003992 SRP335395 PRJNA759881 Persistent Impact of Short term Amitriptyline Exposure on brain Transcriptional Profile of Zebrafish Danio rerio PRJNA759881 Other Following exposure to Amitriptyline AMI for 7 days E7 zebrafish were transferred into AMI free water to recover for 21 days R21. Brain transcriptional profiles were investigated on E7 and R21.     END OF 21 DAY RECOVERY   R01   strain:AB|age:4 MONTHS|dev stage:Adult|sex:female|tissue:brain|replicate:replicate = biological replicate 1|treatment:control|SAMPLING TIME:END OF 21 DAY RECOVERY|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult female brain R01 R01 a standardized procedure at the Beijing Genome Institute     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP335395     R01_1.fq.gz R01_2.fq.gz fastq fastq 6781182900.0 45207886.0 R01 1.fq.gz 0:150 1:150 A:1988991157;C:1393829563;G:1402027963;T:1996312981;N:21236 150 150     1988991157 1393829563 1402027963 1996312981 21236 SRX11996477 SRS10003992 SRA1288076 Jiangsu University|Institute of Environmental Health and Ecological S Jiangsu University 1 0.91278   0.20165   0.71054   0.54354   150   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   China 2021-09-02 Adult Adult Brain Nervous System
65945 65945 SRR15700566 SRX11996476 SRS10003991 SRP335395 PRJNA759881 Persistent Impact of Short term Amitriptyline Exposure on brain Transcriptional Profile of Zebrafish Danio rerio PRJNA759881 Other Following exposure to Amitriptyline AMI for 7 days E7 zebrafish were transferred into AMI free water to recover for 21 days R21. Brain transcriptional profiles were investigated on E7 and R21.     END OF 7 DAY EXPOSURE   EH3   strain:AB|age:4 MONTHS|dev stage:Adult|sex:female|tissue:brain|replicate:replicate = biological replicate 3|treatment:AMI 40.0|SAMPLING TIME:END OF 7 DAY EXPOSURE|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult female brain EH3 EH3 a standardized procedure at the Beijing Genome Institute     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP335395     EH3_1.fq.gz EH3_2.fq.gz fastq fastq 6798939900.0 45326266.0 EH3 1.fq.gz 0:150 1:150 A:1958992563;C:1429773625;G:1441958341;T:1968192397;N:22974 150 150     1958992563 1429773625 1441958341 1968192397 22974 SRX11996476 SRS10003991 SRA1288076 Jiangsu University|Institute of Environmental Health and Ecological S Jiangsu University 1 0.91681   0.18245   0.7083   0.5369   150   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   China 2021-09-02 Adult Adult Brain Nervous System
65946 65946 SRR15700567 SRX11996475 SRS10003990 SRP335395 PRJNA759881 Persistent Impact of Short term Amitriptyline Exposure on brain Transcriptional Profile of Zebrafish Danio rerio PRJNA759881 Other Following exposure to Amitriptyline AMI for 7 days E7 zebrafish were transferred into AMI free water to recover for 21 days R21. Brain transcriptional profiles were investigated on E7 and R21.     END OF 7 DAY EXPOSURE   EH2   strain:AB|age:4 MONTHS|dev stage:Adult|sex:female|tissue:brain|replicate:replicate = biological replicate 2|treatment:AMI 40.0|SAMPLING TIME:END OF 7 DAY EXPOSURE|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult female brain EH2 EH2 a standardized procedure at the Beijing Genome Institute     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP335395     EH2_1.fq.gz EH2_2.fq.gz fastq fastq 6792825900.0 45285506.0 EH2 1.fq.gz 0:150 1:150 A:1958355652;C:1427389031;G:1440081079;T:1966978334;N:21804 150 150     1958355652 1427389031 1440081079 1966978334 21804 SRX11996475 SRS10003990 SRA1288076 Jiangsu University|Institute of Environmental Health and Ecological S Jiangsu University 1 0.91907   0.17888   0.70575   0.54118   150   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   China 2021-09-02 Adult Adult Brain Nervous System
65947 65947 SRR15700568 SRX11996474 SRS10003989 SRP335395 PRJNA759881 Persistent Impact of Short term Amitriptyline Exposure on brain Transcriptional Profile of Zebrafish Danio rerio PRJNA759881 Other Following exposure to Amitriptyline AMI for 7 days E7 zebrafish were transferred into AMI free water to recover for 21 days R21. Brain transcriptional profiles were investigated on E7 and R21.     END OF 7 DAY EXPOSURE   EH1   strain:AB|age:4 MONTHS|dev stage:Adult|sex:female|tissue:brain|replicate:replicate = biological replicate 1|treatment:AMI 40.0|SAMPLING TIME:END OF 7 DAY EXPOSURE|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult female brain EH1 EH1 a standardized procedure at the Beijing Genome Institute     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP335395     EH1_1.fq.gz EH1_2.fq.gz fastq fastq 6723154200.0 44821028.0 EH1 1.fq.gz 0:150 1:150 A:1939940725;C:1412087358;G:1424339686;T:1946764075;N:22356 150 150     1939940725 1412087358 1424339686 1946764075 22356 SRX11996474 SRS10003989 SRA1288076 Jiangsu University|Institute of Environmental Health and Ecological S Jiangsu University 1 0.91848   0.1756   0.71293   0.54795   150   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   China 2021-09-02 Adult Adult Brain Nervous System
65948 65948 SRR15700569 SRX11996473 SRS10003988 SRP335395 PRJNA759881 Persistent Impact of Short term Amitriptyline Exposure on brain Transcriptional Profile of Zebrafish Danio rerio PRJNA759881 Other Following exposure to Amitriptyline AMI for 7 days E7 zebrafish were transferred into AMI free water to recover for 21 days R21. Brain transcriptional profiles were investigated on E7 and R21.     END OF 7 DAY EXPOSURE   EL3   strain:AB|age:4 MONTHS|dev stage:Adult|sex:female|tissue:brain|replicate:replicate = biological replicate 3|treatment:AMI 2.5|SAMPLING TIME:END OF 7 DAY EXPOSURE|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult female brain EL3 EL3 a standardized procedure at the Beijing Genome Institute     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP335395     EL3_1.fq.gz EL3_2.fq.gz fastq fastq 6756746700.0 45044978.0 EL3 1.fq.gz 0:150 1:150 A:1958754520;C:1411572406;G:1418753117;T:1967647023;N:19634 150 150     1958754520 1411572406 1418753117 1967647023 19634 SRX11996473 SRS10003988 SRA1288076 Jiangsu University|Institute of Environmental Health and Ecological S Jiangsu University 1 0.91873   0.18319   0.71027   0.55277   150   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   China 2021-09-02 Adult Adult Brain Nervous System
65949 65949 SRR15700570 SRX11996472 SRS10003987 SRP335395 PRJNA759881 Persistent Impact of Short term Amitriptyline Exposure on brain Transcriptional Profile of Zebrafish Danio rerio PRJNA759881 Other Following exposure to Amitriptyline AMI for 7 days E7 zebrafish were transferred into AMI free water to recover for 21 days R21. Brain transcriptional profiles were investigated on E7 and R21.     END OF 7 DAY EXPOSURE   EL2   strain:AB|age:4 MONTHS|dev stage:Adult|sex:female|tissue:brain|replicate:replicate = biological replicate 2|treatment:AMI 2.5|SAMPLING TIME:END OF 7 DAY EXPOSURE|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult female brain EL2 EL2 a standardized procedure at the Beijing Genome Institute     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP335395     EL2_1.fq.gz EL2_2.fq.gz fastq fastq 6811200600.0 45408004.0 EL2 1.fq.gz 0:150 1:150 A:1961542081;C:1433135536;G:1446857456;T:1969644200;N:21327 150 150     1961542081 1433135536 1446857456 1969644200 21327 SRX11996472 SRS10003987 SRA1288076 Jiangsu University|Institute of Environmental Health and Ecological S Jiangsu University 1 0.91853   0.17639   0.71076   0.54175   150   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   China 2021-09-02 Adult Adult Brain Nervous System
65950 65950 SRR15700571 SRX11996471 SRS10003986 SRP335395 PRJNA759881 Persistent Impact of Short term Amitriptyline Exposure on brain Transcriptional Profile of Zebrafish Danio rerio PRJNA759881 Other Following exposure to Amitriptyline AMI for 7 days E7 zebrafish were transferred into AMI free water to recover for 21 days R21. Brain transcriptional profiles were investigated on E7 and R21.     END OF 7 DAY EXPOSURE   EL1   strain:AB|age:4 MONTHS|dev stage:Adult|sex:female|tissue:brain|replicate:replicate = biological replicate 1|treatment:AMI 2.5|SAMPLING TIME:END OF 7 DAY EXPOSURE|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult female brain EL1 EL1 a standardized procedure at the Beijing Genome Institute     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP335395     EL1_1.fq.gz EL1_2.fq.gz fastq fastq 6764302200.0 45095348.0 EL1 1.fq.gz 0:150 1:150 A:1943560425;C:1428175041;G:1441358638;T:1951185256;N:22840 150 150     1943560425 1428175041 1441358638 1951185256 22840 SRX11996471 SRS10003986 SRA1288076 Jiangsu University|Institute of Environmental Health and Ecological S Jiangsu University 1 0.91885   0.17456   0.71423   0.53356   150   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   China 2021-09-02 Adult Adult Brain Nervous System
65951 65951 SRR15700572 SRX11996470 SRS10003985 SRP335395 PRJNA759881 Persistent Impact of Short term Amitriptyline Exposure on brain Transcriptional Profile of Zebrafish Danio rerio PRJNA759881 Other Following exposure to Amitriptyline AMI for 7 days E7 zebrafish were transferred into AMI free water to recover for 21 days R21. Brain transcriptional profiles were investigated on E7 and R21.     END OF 7 DAY EXPOSURE   E03   strain:AB|age:4 MONTHS|dev stage:Adult|sex:female|tissue:brain|replicate:replicate = biological replicate 3|treatment:control|SAMPLING TIME:END OF 7 DAY EXPOSURE|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult female brain E03 E03 a standardized procedure at the Beijing Genome Institute     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP335395     E03_1.fq.gz E03_2.fq.gz fastq fastq 6762334500.0 45082230.0 E03 1.fq.gz 0:150 1:150 A:1941432663;C:1429093210;G:1444693949;T:1947091388;N:23290 150 150     1941432663 1429093210 1444693949 1947091388 23290 SRX11996470 SRS10003985 SRA1288076 Jiangsu University|Institute of Environmental Health and Ecological S Jiangsu University 1 0.91902   0.17577   0.71413   0.54672   150   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   China 2021-09-02 Adult Adult Brain Nervous System
65952 65952 SRR15700573 SRX11996469 SRS10003984 SRP335395 PRJNA759881 Persistent Impact of Short term Amitriptyline Exposure on brain Transcriptional Profile of Zebrafish Danio rerio PRJNA759881 Other Following exposure to Amitriptyline AMI for 7 days E7 zebrafish were transferred into AMI free water to recover for 21 days R21. Brain transcriptional profiles were investigated on E7 and R21.     END OF 21 DAY RECOVERY   RH3   strain:AB|age:4 MONTHS|dev stage:Adult|sex:female|tissue:brain|replicate:replicate = biological replicate 3|treatment:AMI 40.0|SAMPLING TIME:END OF 21 DAY RECOVERY|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult female brain RH3 RH3 a standardized procedure at the Beijing Genome Institute     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP335395     RH3_1.fq.gz RH3_2.fq.gz fastq fastq 6620159400.0 44134396.0 RH3 1.fq.gz 0:150 1:150 A:1906961918;C:1396128146;G:1402603611;T:1914452217;N:13508 150 150     1906961918 1396128146 1402603611 1914452217 13508 SRX11996469 SRS10003984 SRA1288076 Jiangsu University|Institute of Environmental Health and Ecological S Jiangsu University 1 0.91596   0.18007   0.70307   0.53072   150   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   China 2021-09-02 Adult Adult Brain Nervous System
65953 65953 SRR15700574 SRX11996468 SRS10003983 SRP335395 PRJNA759881 Persistent Impact of Short term Amitriptyline Exposure on brain Transcriptional Profile of Zebrafish Danio rerio PRJNA759881 Other Following exposure to Amitriptyline AMI for 7 days E7 zebrafish were transferred into AMI free water to recover for 21 days R21. Brain transcriptional profiles were investigated on E7 and R21.     END OF 21 DAY RECOVERY   RH2   strain:AB|age:4 MONTHS|dev stage:Adult|sex:female|tissue:brain|replicate:replicate = biological replicate 2|treatment:AMI 40.0|SAMPLING TIME:END OF 21 DAY RECOVERY|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult female brain RH2 RH2 a standardized procedure at the Beijing Genome Institute     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP335395     RH2_1.fq.gz RH2_2.fq.gz fastq fastq 6779957400.0 45199716.0 RH2 1.fq.gz 0:150 1:150 A:1943750299;C:1436936087;G:1447253724;T:1952003667;N:13623 150 150     1943750299 1436936087 1447253724 1952003667 13623 SRX11996468 SRS10003983 SRA1288076 Jiangsu University|Institute of Environmental Health and Ecological S Jiangsu University 1 0.91806   0.17416   0.70364   0.53449   150   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   China 2021-09-02 Adult Adult Brain Nervous System
65954 65954 SRR15700575 SRX11996467 SRS10003982 SRP335395 PRJNA759881 Persistent Impact of Short term Amitriptyline Exposure on brain Transcriptional Profile of Zebrafish Danio rerio PRJNA759881 Other Following exposure to Amitriptyline AMI for 7 days E7 zebrafish were transferred into AMI free water to recover for 21 days R21. Brain transcriptional profiles were investigated on E7 and R21.     END OF 21 DAY RECOVERY   RH1   strain:AB|age:4 MONTHS|dev stage:Adult|sex:female|tissue:brain|replicate:replicate = biological replicate 1|treatment:AMI 40.0|SAMPLING TIME:END OF 21 DAY RECOVERY|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult female brain RH1 RH1 a standardized procedure at the Beijing Genome Institute     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP335395     RH1_1.fq.gz RH1_2.fq.gz fastq fastq 6803711400.0 45358076.0 RH1 1.fq.gz 0:150 1:150 A:1919109429;C:1472916047;G:1485344758;T:1926327627;N:13539 150 150     1919109429 1472916047 1485344758 1926327627 13539 SRX11996467 SRS10003982 SRA1288076 Jiangsu University|Institute of Environmental Health and Ecological S Jiangsu University 1 0.92595   0.14064   0.71392   0.5508   150   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   China 2021-09-02 Adult Adult Brain Nervous System
65955 65955 SRR15700576 SRX11996466 SRS10003981 SRP335395 PRJNA759881 Persistent Impact of Short term Amitriptyline Exposure on brain Transcriptional Profile of Zebrafish Danio rerio PRJNA759881 Other Following exposure to Amitriptyline AMI for 7 days E7 zebrafish were transferred into AMI free water to recover for 21 days R21. Brain transcriptional profiles were investigated on E7 and R21.     END OF 21 DAY RECOVERY   RL3   strain:AB|age:4 MONTHS|dev stage:Adult|sex:female|tissue:brain|replicate:replicate = biological replicate 3|treatment:AMI 2.5|SAMPLING TIME:END OF 21 DAY RECOVERY|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult female brain RL3 RL3 a standardized procedure at the Beijing Genome Institute     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP335395     RL3_1.fq.gz RL3_2.fq.gz fastq fastq 6775779300.0 45171862.0 RL3 1.fq.gz 0:150 1:150 A:1977555439;C:1404514814;G:1412262159;T:1981432811;N:14077 150 150     1977555439 1404514814 1412262159 1981432811 14077 SRX11996466 SRS10003981 SRA1288076 Jiangsu University|Institute of Environmental Health and Ecological S Jiangsu University 1 0.91883   0.1833   0.71638   0.55343   150   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   China 2021-09-02 Adult Adult Brain Nervous System
65956 65956 SRR15700577 SRX11996465 SRS10003979 SRP335395 PRJNA759881 Persistent Impact of Short term Amitriptyline Exposure on brain Transcriptional Profile of Zebrafish Danio rerio PRJNA759881 Other Following exposure to Amitriptyline AMI for 7 days E7 zebrafish were transferred into AMI free water to recover for 21 days R21. Brain transcriptional profiles were investigated on E7 and R21.     END OF 21 DAY RECOVERY   RL2   strain:AB|age:4 MONTHS|dev stage:Adult|sex:female|tissue:brain|replicate:replicate = biological replicate 2|treatment:AMI 2.5|SAMPLING TIME:END OF 21 DAY RECOVERY|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult female brain RL2 RL2 a standardized procedure at the Beijing Genome Institute     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP335395     RL2_1.fq.gz RL2_2.fq.gz fastq fastq 6716301900.0 44775346.0 RL2 1.fq.gz 0:150 1:150 A:1959165761;C:1392977724;G:1400724963;T:1963418595;N:14857 150 150     1959165761 1392977724 1400724963 1963418595 14857 SRX11996465 SRS10003979 SRA1288076 Jiangsu University|Institute of Environmental Health and Ecological S Jiangsu University 1 0.92114   0.18164   0.7217   0.55665   150   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   China 2021-09-02 Adult Adult Brain Nervous System
65957 65957 SRR15700578 SRX11996464 SRS10003980 SRP335395 PRJNA759881 Persistent Impact of Short term Amitriptyline Exposure on brain Transcriptional Profile of Zebrafish Danio rerio PRJNA759881 Other Following exposure to Amitriptyline AMI for 7 days E7 zebrafish were transferred into AMI free water to recover for 21 days R21. Brain transcriptional profiles were investigated on E7 and R21.     END OF 21 DAY RECOVERY   RL1   strain:AB|age:4 MONTHS|dev stage:Adult|sex:female|tissue:brain|replicate:replicate = biological replicate 1|treatment:AMI 2.5|SAMPLING TIME:END OF 21 DAY RECOVERY|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult female brain RL1 RL1 a standardized procedure at the Beijing Genome Institute     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP335395     RL1_1.fq.gz RL1_2.fq.gz fastq fastq 6632905200.0 44219368.0 RL1 1.fq.gz 0:150 1:150 A:1930258593;C:1379056686;G:1391344096;T:1932223405;N:22420 150 150     1930258593 1379056686 1391344096 1932223405 22420 SRX11996464 SRS10003980 SRA1288076 Jiangsu University|Institute of Environmental Health and Ecological S Jiangsu University 1 0.91966   0.18087   0.72121   0.5664   150   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   China 2021-09-02 Adult Adult Brain Nervous System
65958 65958 SRR15700579 SRX11996463 SRS10003978 SRP335395 PRJNA759881 Persistent Impact of Short term Amitriptyline Exposure on brain Transcriptional Profile of Zebrafish Danio rerio PRJNA759881 Other Following exposure to Amitriptyline AMI for 7 days E7 zebrafish were transferred into AMI free water to recover for 21 days R21. Brain transcriptional profiles were investigated on E7 and R21.     END OF 21 DAY RECOVERY   R03   strain:AB|age:4 MONTHS|dev stage:Adult|sex:female|tissue:brain|replicate:replicate = biological replicate 3|treatment:control|SAMPLING TIME:END OF 21 DAY RECOVERY|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult female brain R03 R03 a standardized procedure at the Beijing Genome Institute     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP335395     R03_1.fq.gz R03_2.fq.gz fastq fastq 6574600200.0 43830668.0 R03 1.fq.gz 0:150 1:150 A:1940343461;C:1342685356;G:1350150434;T:1941399481;N:21468 150 150     1940343461 1342685356 1350150434 1941399481 21468 SRX11996463 SRS10003978 SRA1288076 Jiangsu University|Institute of Environmental Health and Ecological S Jiangsu University 1 0.91867   0.19479   0.72707   0.57885   150   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   China 2021-09-02 Adult Adult Brain Nervous System
65959 65959 SRR15700580 SRX11996462 SRS10003977 SRP335395 PRJNA759881 Persistent Impact of Short term Amitriptyline Exposure on brain Transcriptional Profile of Zebrafish Danio rerio PRJNA759881 Other Following exposure to Amitriptyline AMI for 7 days E7 zebrafish were transferred into AMI free water to recover for 21 days R21. Brain transcriptional profiles were investigated on E7 and R21.     END OF 21 DAY RECOVERY   R02   strain:AB|age:4 MONTHS|dev stage:Adult|sex:female|tissue:brain|replicate:replicate = biological replicate 2|treatment:control|SAMPLING TIME:END OF 21 DAY RECOVERY|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult female brain R02 R02 a standardized procedure at the Beijing Genome Institute     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP335395     R02_1.fq.gz R02_2.fq.gz fastq fastq 6399007800.0 42660052.0 R02 1.fq.gz 0:150 1:150 A:1884110766;C:1308008993;G:1315054545;T:1891764364;N:69132 150 150     1884110766 1308008993 1315054545 1891764364 69132 SRX11996462 SRS10003977 SRA1288076 Jiangsu University|Institute of Environmental Health and Ecological S Jiangsu University 1 0.91477   0.19859   0.72417   0.55394   150   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   China 2021-09-02 Adult Adult Brain Nervous System
65960 65960 SRR15700581 SRX11996461 SRS10003976 SRP335395 PRJNA759881 Persistent Impact of Short term Amitriptyline Exposure on brain Transcriptional Profile of Zebrafish Danio rerio PRJNA759881 Other Following exposure to Amitriptyline AMI for 7 days E7 zebrafish were transferred into AMI free water to recover for 21 days R21. Brain transcriptional profiles were investigated on E7 and R21.     END OF 7 DAY EXPOSURE   E02   strain:AB|age:4 MONTHS|dev stage:Adult|sex:female|tissue:brain|replicate:replicate = biological replicate 2|treatment:control|SAMPLING TIME:END OF 7 DAY EXPOSURE|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult female brain E02 E02 a standardized procedure at the Beijing Genome Institute     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP335395     E02_1.fq.gz E02_2.fq.gz fastq fastq 6588207000.0 43921380.0 E02 1.fq.gz 0:150 1:150 A:1905685715;C:1379753621;G:1389708827;T:1913038146;N:20691 150 150     1905685715 1379753621 1389708827 1913038146 20691 SRX11996461 SRS10003976 SRA1288076 Jiangsu University|Institute of Environmental Health and Ecological S Jiangsu University 1 0.91596   0.18027   0.70903   0.54349   150   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   China 2021-09-02 Adult Adult Brain Nervous System
65961 65961 SRR15700582 SRX11996460 SRS10003975 SRP335395 PRJNA759881 Persistent Impact of Short term Amitriptyline Exposure on brain Transcriptional Profile of Zebrafish Danio rerio PRJNA759881 Other Following exposure to Amitriptyline AMI for 7 days E7 zebrafish were transferred into AMI free water to recover for 21 days R21. Brain transcriptional profiles were investigated on E7 and R21.     END OF 7 DAY EXPOSURE   E01   strain:AB|age:4 MONTHS|dev stage:Adult|sex:female|tissue:brain|replicate:replicate = biological replicate 1|treatment:control|SAMPLING TIME:END OF 7 DAY EXPOSURE|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult female brain E01 E01 a standardized procedure at the Beijing Genome Institute     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP335395     E01_1.fq.gz E01_2.fq.gz fastq fastq 6766213800.0 45108092.0 E01 1.fq.gz 0:150 1:150 A:1963125745;C:1410900205;G:1420069949;T:1972096961;N:20940 150 150     1963125745 1410900205 1420069949 1972096961 20940 SRX11996460 SRS10003975 SRA1288076 Jiangsu University|Institute of Environmental Health and Ecological S Jiangsu University 1 0.91884   0.18555   0.71585   0.5455   150   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   China 2021-09-02 Adult Adult Brain Nervous System

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;