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run_metadata

31 rows where experiment.library_selection = "Oligo-dT", experiment.library_source = "TRANSCRIPTOMIC" and tissue_curation = "Gut"

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experiment.platform 2

devstage_curation_coarse 2

devstage_curation 2

tissue_curation_coarse 1

tissue_curation 1

  • Gut · 31 ✖

technology 1

experiment.library_strategy 1

experiment.library_source 1

  • TRANSCRIPTOMIC · 31 ✖

experiment.library_selection 1

  • Oligo-dT · 31 ✖

experiment.library_layout 1

Link rowid ▼ run.accession experiment.accession sample.accession study.accession bioproject study.title study.alias study.type study.abstract study.attributes study.PMIDs sample.description sample.title sample.alias sample.centername sample.attributes GEOsample.title GEOsample.dataprocessing GEOsample.source GEOsample.treatmentprotocol GEOsample.extractprotocol GEOsample.growthprotocol GEOsample.characteristics GEOsample.accession experiment.title experiment.alias experiment.library_name experiment.design_description experiment.library_construction_protocol experiment.attributes experiment.library_strategy experiment.library_source experiment.library_selection experiment.library_layout experiment.platform experiment.instrument_model experiment.spot_descriptor experiment.study_ref run.title run.attributes run.filename run.semantic_name run.total_bases run.total_spots run.alias run.read_lengths run.base_counts run.r1_length run.r2_length run.r3_length run.r4_length run.Acount run.Ccount run.Gcount run.Tcount run.Ncount run.experiment run.pool_member submission.accession submission.srasource submission.bioprojectsource seqdetective.n_mates seqdetective.mapping_rate.mate1 seqdetective.mapping_rate.mate2 seqdetective.nofeature_rate.mate1 seqdetective.nofeature_rate.mate2 seqdetective.sparsity.mate1 seqdetective.sparsity.mate2 seqdetective.pos_strand_rate.mate1 seqdetective.pos_strand_rate.mate2 seqdetective.readlen.mate1 seqdetective.readlen.mate2 seqdetective.judgement.mate1 seqdetective.judgement.mate2 seqdetective.judgement.reason platform_family instrument_generation read_bias selection_class prep_kit sc_or_bulk tech_class technology tech_variant submission.bioprojectsource.country earliest_date devstage_curation devstage_curation_coarse tissue_curation tissue_curation_coarse
24918 24918 SRR25594442 SRX21322829 SRS18569855 SRP454395 PRJNA1002816 Danio rerio Raw sequence reads PRJNA1002816 Whole Genome Sequencing Zebrafish Transcriptome         Zebrafish intestine   strain:Not Applicable|isolate:Not Applicable|breed:Not Applicable|cultivar:Not Applicable|ecotype:Not Applicable|age:Not Applicable|dev stage:Not Applicable|collection date:Not Applicable|geo loc name:Not Applicable|sex:Not Applicable|tissue:intestine|BioSampleModel:Model organism or animal                 Zebrafish Intestinal Transcriptome Z 2 1.fq Z 2 1.fq Intestinal Transcriptome     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP454395     Z-2_2.fq.gz Z-2_1.fq.gz fastq fastq 5621492400.0 18738308.0 Z 2 1.fq.gz 0:150 1:150 A:1483421677;C:1306378425;G:1338052121;T:1493618330;N:21847 150 150     1483421677 1306378425 1338052121 1493618330 21847 SRX21322829 SRS18569855 SRA1689922 Yangtze River Fisheries Research Institute,Chinese Academy of Fishery Sciences|fish Yangtze River Fisheries Research Institute,Chinese Academy of Fishery Sciences 2 0.94389 0.93819 0.03702 0.03621 0.71758 0.72423 0.43774 0.4558 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2023-08-10 Undetermined Undetermined Gut Digestive System
24919 24919 SRR25594443 SRX21322828 SRS18569855 SRP454395 PRJNA1002816 Danio rerio Raw sequence reads PRJNA1002816 Whole Genome Sequencing Zebrafish Transcriptome         Zebrafish intestine   strain:Not Applicable|isolate:Not Applicable|breed:Not Applicable|cultivar:Not Applicable|ecotype:Not Applicable|age:Not Applicable|dev stage:Not Applicable|collection date:Not Applicable|geo loc name:Not Applicable|sex:Not Applicable|tissue:intestine|BioSampleModel:Model organism or animal                 Zebrafish Intestinal Transcriptome Z 1 1.fq Z 1 1.fq Intestinal Transcriptome     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP454395     Z-1_2.fq.gz Z-1_1.fq.gz fastq fastq 6301274700.0 21004249.0 Z 1 1.fq.gz 0:150 1:150 A:1671253253;C:1458678359;G:1491311308;T:1680006330;N:25450 150 150     1671253253 1458678359 1491311308 1680006330 25450 SRX21322828 SRS18569855 SRA1689922 Yangtze River Fisheries Research Institute,Chinese Academy of Fishery Sciences|fish Yangtze River Fisheries Research Institute,Chinese Academy of Fishery Sciences 2 0.94339 0.93817 0.03831 0.03813 0.71752 0.72293 0.42611 0.43548 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2023-08-10 Undetermined Undetermined Gut Digestive System
24920 24920 SRR25594444 SRX21322827 SRS18569855 SRP454395 PRJNA1002816 Danio rerio Raw sequence reads PRJNA1002816 Whole Genome Sequencing Zebrafish Transcriptome         Zebrafish intestine   strain:Not Applicable|isolate:Not Applicable|breed:Not Applicable|cultivar:Not Applicable|ecotype:Not Applicable|age:Not Applicable|dev stage:Not Applicable|collection date:Not Applicable|geo loc name:Not Applicable|sex:Not Applicable|tissue:intestine|BioSampleModel:Model organism or animal                 Zebrafish Intestinal Transcriptome K 3 1.fq K 3 1.fq Intestinal Transcriptome     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP454395     K-3_2.fq.gz K-3_1.fq.gz fastq fastq 5519682000.0 18398940.0 K 3 1.fq.gz 0:150 1:150 A:1469946965;C:1270791684;G:1304075220;T:1474846842;N:21289 150 150     1469946965 1270791684 1304075220 1474846842 21289 SRX21322827 SRS18569855 SRA1689922 Yangtze River Fisheries Research Institute,Chinese Academy of Fishery Sciences|fish Yangtze River Fisheries Research Institute,Chinese Academy of Fishery Sciences 2 0.94356 0.93561 0.03986 0.03923 0.71877 0.72697 0.44771 0.44936 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2023-08-10 Undetermined Undetermined Gut Digestive System
24921 24921 SRR25594445 SRX21322826 SRS18569855 SRP454395 PRJNA1002816 Danio rerio Raw sequence reads PRJNA1002816 Whole Genome Sequencing Zebrafish Transcriptome         Zebrafish intestine   strain:Not Applicable|isolate:Not Applicable|breed:Not Applicable|cultivar:Not Applicable|ecotype:Not Applicable|age:Not Applicable|dev stage:Not Applicable|collection date:Not Applicable|geo loc name:Not Applicable|sex:Not Applicable|tissue:intestine|BioSampleModel:Model organism or animal                 Zebrafish Intestinal Transcriptome K 2 1.fq K 2 1.fq Intestinal Transcriptome     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP454395     K-2_1.fq.gz K-2_2.fq.gz fastq fastq 5808261300.0 19360871.0 K 2 1.fq.gz 0:150 1:150 A:1538012312;C:1343217111;G:1375887577;T:1551118640;N:25660 150 150     1538012312 1343217111 1375887577 1551118640 25660 SRX21322826 SRS18569855 SRA1689922 Yangtze River Fisheries Research Institute,Chinese Academy of Fishery Sciences|fish Yangtze River Fisheries Research Institute,Chinese Academy of Fishery Sciences 2 0.94469 0.94137 0.03929 0.03857 0.7175 0.71946 0.44395 0.44354 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2023-08-10 Undetermined Undetermined Gut Digestive System
24922 24922 SRR25594446 SRX21322825 SRS18569855 SRP454395 PRJNA1002816 Danio rerio Raw sequence reads PRJNA1002816 Whole Genome Sequencing Zebrafish Transcriptome         Zebrafish intestine   strain:Not Applicable|isolate:Not Applicable|breed:Not Applicable|cultivar:Not Applicable|ecotype:Not Applicable|age:Not Applicable|dev stage:Not Applicable|collection date:Not Applicable|geo loc name:Not Applicable|sex:Not Applicable|tissue:intestine|BioSampleModel:Model organism or animal                 Zebrafish Intestinal Transcriptome ZP 3 1.fq ZP 3 1.fq Intestinal Transcriptome     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP454395     ZP-3_1.fq.gz ZP-3_2.fq.gz fastq fastq 5397938100.0 17993127.0 ZP 3 1.fq.gz 0:150 1:150 A:1438191584;C:1244532731;G:1271700792;T:1443491138;N:21855 150 150     1438191584 1244532731 1271700792 1443491138 21855 SRX21322825 SRS18569855 SRA1689922 Yangtze River Fisheries Research Institute,Chinese Academy of Fishery Sciences|fish Yangtze River Fisheries Research Institute,Chinese Academy of Fishery Sciences 2 0.94839 0.94406 0.04345 0.04279 0.71719 0.72362 0.42772 0.4311 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2023-08-10 Undetermined Undetermined Gut Digestive System
24923 24923 SRR25594447 SRX21322824 SRS18569855 SRP454395 PRJNA1002816 Danio rerio Raw sequence reads PRJNA1002816 Whole Genome Sequencing Zebrafish Transcriptome         Zebrafish intestine   strain:Not Applicable|isolate:Not Applicable|breed:Not Applicable|cultivar:Not Applicable|ecotype:Not Applicable|age:Not Applicable|dev stage:Not Applicable|collection date:Not Applicable|geo loc name:Not Applicable|sex:Not Applicable|tissue:intestine|BioSampleModel:Model organism or animal                 Zebrafish Intestinal Transcriptome ZP 2 1.fq ZP 2 1.fq Intestinal Transcriptome     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP454395     ZP-2_1.fq.gz ZP-2_2.fq.gz fastq fastq 6062424900.0 20208083.0 ZP 2 1.fq.gz 0:150 1:150 A:1612595576;C:1398589726;G:1427536119;T:1623678727;N:24752 150 150     1612595576 1398589726 1427536119 1623678727 24752 SRX21322824 SRS18569855 SRA1689922 Yangtze River Fisheries Research Institute,Chinese Academy of Fishery Sciences|fish Yangtze River Fisheries Research Institute,Chinese Academy of Fishery Sciences 2 0.95013 0.94657 0.04364 0.04342 0.71565 0.71908 0.44652 0.44832 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2023-08-10 Undetermined Undetermined Gut Digestive System
24924 24924 SRR25594448 SRX21322823 SRS18569855 SRP454395 PRJNA1002816 Danio rerio Raw sequence reads PRJNA1002816 Whole Genome Sequencing Zebrafish Transcriptome         Zebrafish intestine   strain:Not Applicable|isolate:Not Applicable|breed:Not Applicable|cultivar:Not Applicable|ecotype:Not Applicable|age:Not Applicable|dev stage:Not Applicable|collection date:Not Applicable|geo loc name:Not Applicable|sex:Not Applicable|tissue:intestine|BioSampleModel:Model organism or animal                 Zebrafish Intestinal Transcriptome ZP 1 1.fq ZP 1 1.fq Intestinal Transcriptome     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP454395     ZP-1_2.fq.gz ZP-1_1.fq.gz fastq fastq 6487607100.0 21625357.0 ZP 1 1.fq.gz 0:150 1:150 A:1728514584;C:1494175744;G:1521726756;T:1743164500;N:25516 150 150     1728514584 1494175744 1521726756 1743164500 25516 SRX21322823 SRS18569855 SRA1689922 Yangtze River Fisheries Research Institute,Chinese Academy of Fishery Sciences|fish Yangtze River Fisheries Research Institute,Chinese Academy of Fishery Sciences 2 0.94867 0.94432 0.04535 0.0449 0.71926 0.72348 0.43747 0.44661 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2023-08-10 Undetermined Undetermined Gut Digestive System
24925 24925 SRR25594449 SRX21322822 SRS18569855 SRP454395 PRJNA1002816 Danio rerio Raw sequence reads PRJNA1002816 Whole Genome Sequencing Zebrafish Transcriptome         Zebrafish intestine   strain:Not Applicable|isolate:Not Applicable|breed:Not Applicable|cultivar:Not Applicable|ecotype:Not Applicable|age:Not Applicable|dev stage:Not Applicable|collection date:Not Applicable|geo loc name:Not Applicable|sex:Not Applicable|tissue:intestine|BioSampleModel:Model organism or animal                 Zebrafish Intestinal Transcriptome Z 3 1.fq Z 3 1.fq Intestinal Transcriptome     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP454395     Z-3_1.fq.gz Z-3_2.fq.gz fastq fastq 8111204700.0 27037349.0 Z 3 1.fq.gz 0:150 1:150 A:2143712842;C:1879826122;G:1918517283;T:2169119328;N:29125 150 150     2143712842 1879826122 1918517283 2169119328 29125 SRX21322822 SRS18569855 SRA1689922 Yangtze River Fisheries Research Institute,Chinese Academy of Fishery Sciences|fish Yangtze River Fisheries Research Institute,Chinese Academy of Fishery Sciences 2 0.94485 0.94083 0.03886 0.03798 0.71362 0.71768 0.44066 0.44713 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2023-08-10 Undetermined Undetermined Gut Digestive System
24926 24926 SRR25594450 SRX21322821 SRS18569855 SRP454395 PRJNA1002816 Danio rerio Raw sequence reads PRJNA1002816 Whole Genome Sequencing Zebrafish Transcriptome         Zebrafish intestine   strain:Not Applicable|isolate:Not Applicable|breed:Not Applicable|cultivar:Not Applicable|ecotype:Not Applicable|age:Not Applicable|dev stage:Not Applicable|collection date:Not Applicable|geo loc name:Not Applicable|sex:Not Applicable|tissue:intestine|BioSampleModel:Model organism or animal                 Zebrafish Intestinal Transcriptome K 1 1.fq K 1 1.fq Intestinal Transcriptome     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP454395     K-1_1.fq.gz K-1_2.fq.gz fastq fastq 7164142200.0 23880474.0 K 1 1.fq.gz 0:150 1:150 A:1896647470;C:1661542391;G:1700422400;T:1905500150;N:29789 150 150     1896647470 1661542391 1700422400 1905500150 29789 SRX21322821 SRS18569855 SRA1689922 Yangtze River Fisheries Research Institute,Chinese Academy of Fishery Sciences|fish Yangtze River Fisheries Research Institute,Chinese Academy of Fishery Sciences 2 0.94635 0.94209 0.03738 0.03664 0.71961 0.72571 0.45014 0.44857 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2023-08-10 Undetermined Undetermined Gut Digestive System
67005 67005 SRR16972425 SRX13163301 SRS11094637 SRP346689 PRJNA781427 RNA Seq analysis of wild type and chs1 / zebrafish gut PRJNA781427 Other To investigate the mRNA expression profiles in the intestine of wild type and chitin synthase 1 knock out chs1 / zebrafish extracted total RNA of intestine from samples of different ages to generate cDNA libraries and sequenced using Illumina NovaSeq 6000 system platform.         MU 6M   breed:TU|age:6 mpf|dev stage:Adult|sex:not collected|tissue:Intestine|birth date:2021 01 21|collection date:2021 07 09|death date:2021 07 09|genotype:chs1 / |health state:health|sample type:tissue sample|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult gut MU 6M rep2 MU 6M rep2 Adults Danio rerio were euthanized by MS 222 whole intestines were collected from the abdomen region. Total RNA was extracted using TRIzol Plus RNA Purification Kit. cDNA libraries were generated by Oligo dT for sequencing.     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP346689     Daniorerio_6months_MU2-01T0003_good_1.fq.gz Daniorerio_6months_MU2-01T0003_good_2.fq.gz Daniorerio_6months_MU2_add-01T0003_good_1.fq.gz Daniorerio_6months_MU2_add-01T0003_good_2.fq.gz fastq fastq fastq fastq 26247918860.0 88200239.0 Daniorerio 6months MU2 01T0003 good 1.fq.gz 0:148.80 1:148.80 A:6706581059;C:6362908903;G:6430710510;T:6747581679;N:136709 148 148     6706581059 6362908903 6430710510 6747581679 136709 SRX13163301 SRS11094637 SRA1330971 Sun Yat-sen University|School of Life Sciences Sun Yat-sen University 2 0.94119 0.94122 0.05124 0.05059 0.75043 0.75065 0.52934 0.53052 140 140 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2021-11-18 Adult Adult Gut Digestive System
67006 67006 SRR16972426 SRX13163300 SRS11094638 SRP346689 PRJNA781427 RNA Seq analysis of wild type and chs1 / zebrafish gut PRJNA781427 Other To investigate the mRNA expression profiles in the intestine of wild type and chitin synthase 1 knock out chs1 / zebrafish extracted total RNA of intestine from samples of different ages to generate cDNA libraries and sequenced using Illumina NovaSeq 6000 system platform.         WT 3M   breed:TU|age:3 mpf|dev stage:Adult|sex:not collected|tissue:Intestine|birth date:2020 07 08|collection date:2020 10 15|death date:2020 10 15|genotype:wild type|health state:health|sample type:tissue sample|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult gut WT 3M rep2 WT 3M rep2 Adults Danio rerio were euthanized by MS 222 whole intestines were collected from the abdomen region. Total RNA was extracted using TRIzol Plus RNA Purification Kit. cDNA libraries were generated by Oligo dT for sequencing.     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP346689   loader:fastq load.py|options: doNotUseSharq allowEarlyFileEnd maxErrorCount=0 Daniorerio_3months_WT2-T04_good_1.fq.gz Daniorerio_3months_WT2-T04_good_2.fq.gz fastq fastq 8467967054.0 28305387.0 Daniorerio 3months WT2 T04 good 1.fq.gz 0:149.58 1:149.58 A:2259351363;C:1963646091;G:1984749237;T:2259951700;N:268663 149 149     2259351363 1963646091 1984749237 2259951700 268663 SRX13163300 SRS11094638 SRA1330971 Sun Yat-sen University|School of Life Sciences Sun Yat-sen University 2 0.92857 0.9274 0.07369 0.07329 0.7344 0.73598 0.52047 0.53156 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2021-11-19 Adult Adult Gut Digestive System
67007 67007 SRR16972427 SRX13163299 SRS11094638 SRP346689 PRJNA781427 RNA Seq analysis of wild type and chs1 / zebrafish gut PRJNA781427 Other To investigate the mRNA expression profiles in the intestine of wild type and chitin synthase 1 knock out chs1 / zebrafish extracted total RNA of intestine from samples of different ages to generate cDNA libraries and sequenced using Illumina NovaSeq 6000 system platform.         WT 3M   breed:TU|age:3 mpf|dev stage:Adult|sex:not collected|tissue:Intestine|birth date:2020 07 08|collection date:2020 10 15|death date:2020 10 15|genotype:wild type|health state:health|sample type:tissue sample|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult gut WT 3M rep1 WT 3M rep1 Adults Danio rerio were euthanized by MS 222 whole intestines were collected from the abdomen region. Total RNA was extracted using TRIzol Plus RNA Purification Kit. cDNA libraries were generated by Oligo dT for sequencing.     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP346689   loader:fastq load.py|options: doNotUseSharq allowEarlyFileEnd maxErrorCount=0 Daniorerio_3months_WT1-T03_good_1.fq.gz Daniorerio_3months_WT1-T03_good_2.fq.gz fastq fastq 7212592596.0 24118086.0 Daniorerio 3months WT1 T03 good 1.fq.gz 0:149.53 1:149.53 A:1928347826;C:1670886595;G:1685298858;T:1927833118;N:226199 149 149     1928347826 1670886595 1685298858 1927833118 226199 SRX13163299 SRS11094638 SRA1330971 Sun Yat-sen University|School of Life Sciences Sun Yat-sen University 2 0.92847 0.92926 0.07508 0.07526 0.7402 0.74115 0.53069 0.52994 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2021-11-19 Adult Adult Gut Digestive System
67008 67008 SRR16972428 SRX13163298 SRS11094637 SRP346689 PRJNA781427 RNA Seq analysis of wild type and chs1 / zebrafish gut PRJNA781427 Other To investigate the mRNA expression profiles in the intestine of wild type and chitin synthase 1 knock out chs1 / zebrafish extracted total RNA of intestine from samples of different ages to generate cDNA libraries and sequenced using Illumina NovaSeq 6000 system platform.         MU 6M   breed:TU|age:6 mpf|dev stage:Adult|sex:not collected|tissue:Intestine|birth date:2021 01 21|collection date:2021 07 09|death date:2021 07 09|genotype:chs1 / |health state:health|sample type:tissue sample|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult gut MU 6M rep1 MU 6M rep1 Adults Danio rerio were euthanized by MS 222 whole intestines were collected from the abdomen region. Total RNA was extracted using TRIzol Plus RNA Purification Kit. cDNA libraries were generated by Oligo dT for sequencing.     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP346689     Daniorerio_6months_MU1-01T0002_good_1.fq.gz Daniorerio_6months_MU1-01T0002_good_2.fq.gz Daniorerio_6months_MU1_add-01T0002_good_1.fq.gz Daniorerio_6months_MU1_add-01T0002_good_2.fq.gz fastq fastq fastq fastq 25069949786.0 84048581.0 Daniorerio 6months MU1 01T0002 good 1.fq.gz 0:149.14 1:149.14 A:6557923073;C:5921477753;G:5998862929;T:6591554621;N:131410 149 149     6557923073 5921477753 5998862929 6591554621 131410 SRX13163298 SRS11094637 SRA1330971 Sun Yat-sen University|School of Life Sciences Sun Yat-sen University 2 0.92686 0.92635 0.04539 0.04507 0.74024 0.74111 0.5104 0.51793 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2021-11-18 Adult Adult Gut Digestive System
67009 67009 SRR16972429 SRX13163297 SRS11094636 SRP346689 PRJNA781427 RNA Seq analysis of wild type and chs1 / zebrafish gut PRJNA781427 Other To investigate the mRNA expression profiles in the intestine of wild type and chitin synthase 1 knock out chs1 / zebrafish extracted total RNA of intestine from samples of different ages to generate cDNA libraries and sequenced using Illumina NovaSeq 6000 system platform.         WT 6M   breed:TU|age:6 mpf|dev stage:Adult|sex:not collected|tissue:Intestine|birth date:2021 01 21|collection date:2021 07 09|death date:2021 07 09|genotype:wild type|health state:health|sample type:tissue sample|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult gut WT 6M rep5 WT 6M rep5 Adults Danio rerio were euthanized by MS 222 whole intestines were collected from the abdomen region. Total RNA was extracted using TRIzol Plus RNA Purification Kit. cDNA libraries were generated by Oligo dT for sequencing.     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP346689   loader:fastq load.py|options: doNotUseSharq allowEarlyFileEnd maxErrorCount=0 Daniorerio_6months_WT5-T11_good_1.fq.gz Daniorerio_6months_WT5-T11_good_2.fq.gz fastq fastq 7033656400.0 23536846.0 Daniorerio 6months WT5 T11 good 1.fq.gz 0:149.42 1:149.42 A:1811251955;C:1673819413;G:1713312637;T:1835256740;N:15655 149 149     1811251955 1673819413 1713312637 1835256740 15655 SRX13163297 SRS11094636 SRA1330971 Sun Yat-sen University|School of Life Sciences Sun Yat-sen University 2 0.93702 0.93617 0.05475 0.0541 0.74789 0.74752 0.54482 0.54579 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2021-11-19 Adult Adult Gut Digestive System
67010 67010 SRR16972430 SRX13163296 SRS11094636 SRP346689 PRJNA781427 RNA Seq analysis of wild type and chs1 / zebrafish gut PRJNA781427 Other To investigate the mRNA expression profiles in the intestine of wild type and chitin synthase 1 knock out chs1 / zebrafish extracted total RNA of intestine from samples of different ages to generate cDNA libraries and sequenced using Illumina NovaSeq 6000 system platform.         WT 6M   breed:TU|age:6 mpf|dev stage:Adult|sex:not collected|tissue:Intestine|birth date:2021 01 21|collection date:2021 07 09|death date:2021 07 09|genotype:wild type|health state:health|sample type:tissue sample|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult gut WT 6M rep4 WT 6M rep4 Adults Danio rerio were euthanized by MS 222 whole intestines were collected from the abdomen region. Total RNA was extracted using TRIzol Plus RNA Purification Kit. cDNA libraries were generated by Oligo dT for sequencing.     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP346689   loader:fastq load.py|options: doNotUseSharq allowEarlyFileEnd maxErrorCount=0 Daniorerio_6months_WT4-T10_good_1.fq.gz Daniorerio_6months_WT4-T10_good_2.fq.gz fastq fastq 7012965398.0 23448817.0 Daniorerio 6months WT4 T10 good 1.fq.gz 0:149.54 1:149.54 A:1853320249;C:1629815005;G:1669888653;T:1859925598;N:15893 149 149     1853320249 1629815005 1669888653 1859925598 15893 SRX13163296 SRS11094636 SRA1330971 Sun Yat-sen University|School of Life Sciences Sun Yat-sen University 2 0.9271 0.92565 0.07612 0.07593 0.73466 0.73649 0.51338 0.51974 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2021-11-19 Adult Adult Gut Digestive System
67011 67011 SRR16972431 SRX13163295 SRS11094636 SRP346689 PRJNA781427 RNA Seq analysis of wild type and chs1 / zebrafish gut PRJNA781427 Other To investigate the mRNA expression profiles in the intestine of wild type and chitin synthase 1 knock out chs1 / zebrafish extracted total RNA of intestine from samples of different ages to generate cDNA libraries and sequenced using Illumina NovaSeq 6000 system platform.         WT 6M   breed:TU|age:6 mpf|dev stage:Adult|sex:not collected|tissue:Intestine|birth date:2021 01 21|collection date:2021 07 09|death date:2021 07 09|genotype:wild type|health state:health|sample type:tissue sample|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult gut WT 6M rep3 WT 6M rep3 Adults Danio rerio were euthanized by MS 222 whole intestines were collected from the abdomen region. Total RNA was extracted using TRIzol Plus RNA Purification Kit. cDNA libraries were generated by Oligo dT for sequencing.     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP346689     Daniorerio_6months_WT3-02T0002_good_1.fq.gz Daniorerio_6months_WT3-02T0002_good_2.fq.gz Daniorerio_6months_WT3_add-02T0002_good_1.fq.gz Daniorerio_6months_WT3_add-02T0002_good_2.fq.gz fastq fastq fastq fastq 17759887004.0 59457706.0 Daniorerio 6months WT3 02T0002 good 1.fq.gz 0:149.35 1:149.35 A:4712859735;C:4120528947;G:4179191528;T:4747044398;N:262396 149 149     4712859735 4120528947 4179191528 4747044398 262396 SRX13163295 SRS11094636 SRA1330971 Sun Yat-sen University|School of Life Sciences Sun Yat-sen University 2 0.94132 0.94052 0.05379 0.05353 0.76274 0.76301 0.53446 0.54191 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2021-11-18 Adult Adult Gut Digestive System
67012 67012 SRR16972432 SRX13163294 SRS11094636 SRP346689 PRJNA781427 RNA Seq analysis of wild type and chs1 / zebrafish gut PRJNA781427 Other To investigate the mRNA expression profiles in the intestine of wild type and chitin synthase 1 knock out chs1 / zebrafish extracted total RNA of intestine from samples of different ages to generate cDNA libraries and sequenced using Illumina NovaSeq 6000 system platform.         WT 6M   breed:TU|age:6 mpf|dev stage:Adult|sex:not collected|tissue:Intestine|birth date:2021 01 21|collection date:2021 07 09|death date:2021 07 09|genotype:wild type|health state:health|sample type:tissue sample|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult gut WT 6M rep2 WT 6M rep2 Adults Danio rerio were euthanized by MS 222 whole intestines were collected from the abdomen region. Total RNA was extracted using TRIzol Plus RNA Purification Kit. cDNA libraries were generated by Oligo dT for sequencing.     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP346689     Daniorerio_6months_WT2-02T0001_good_1.fq.gz Daniorerio_6months_WT2-02T0001_good_2.fq.gz Daniorerio_6months_WT2_add-02T0001_good_1.fq.gz Daniorerio_6months_WT2_add-02T0001_good_2.fq.gz fastq fastq fastq fastq 17304877338.0 58005868.0 Daniorerio 6months WT2 02T0001 good 1.fq.gz 0:149.16 1:149.16 A:4567317204;C:4029770990;G:4089916090;T:4617621274;N:251780 149 149     4567317204 4029770990 4089916090 4617621274 251780 SRX13163294 SRS11094636 SRA1330971 Sun Yat-sen University|School of Life Sciences Sun Yat-sen University 2 0.9417 0.94125 0.04903 0.04882 0.74594 0.74675 0.52815 0.52403 140 140 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2021-11-18 Adult Adult Gut Digestive System
67013 67013 SRR16972433 SRX13163293 SRS11094636 SRP346689 PRJNA781427 RNA Seq analysis of wild type and chs1 / zebrafish gut PRJNA781427 Other To investigate the mRNA expression profiles in the intestine of wild type and chitin synthase 1 knock out chs1 / zebrafish extracted total RNA of intestine from samples of different ages to generate cDNA libraries and sequenced using Illumina NovaSeq 6000 system platform.         WT 6M   breed:TU|age:6 mpf|dev stage:Adult|sex:not collected|tissue:Intestine|birth date:2021 01 21|collection date:2021 07 09|death date:2021 07 09|genotype:wild type|health state:health|sample type:tissue sample|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult gut WT 6M rep1 WT 6M rep1 Adults Danio rerio were euthanized by MS 222 whole intestines were collected from the abdomen region. Total RNA was extracted using TRIzol Plus RNA Purification Kit. cDNA libraries were generated by Oligo dT for sequencing.     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP346689     Daniorerio_6months_WT1-01T0001_good_1.fq.gz Daniorerio_6months_WT1-01T0001_good_2.fq.gz Daniorerio_6months_WT1_add-01T0001_good_1.fq.gz Daniorerio_6months_WT1_add-01T0001_good_2.fq.gz fastq fastq fastq fastq 16602152324.0 55578781.0 Daniorerio 6months WT1 01T0001 good 1.fq.gz 0:149.36 1:149.36 A:4245434211;C:3997153641;G:4055895554;T:4303584997;N:83921 149 149     4245434211 3997153641 4055895554 4303584997 83921 SRX13163293 SRS11094636 SRA1330971 Sun Yat-sen University|School of Life Sciences Sun Yat-sen University 2 0.94805 0.94713 0.03859 0.03827 0.7609 0.76021 0.52389 0.53306 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2021-11-18 Adult Adult Gut Digestive System
67014 67014 SRR16972434 SRX13163292 SRS11094635 SRP346689 PRJNA781427 RNA Seq analysis of wild type and chs1 / zebrafish gut PRJNA781427 Other To investigate the mRNA expression profiles in the intestine of wild type and chitin synthase 1 knock out chs1 / zebrafish extracted total RNA of intestine from samples of different ages to generate cDNA libraries and sequenced using Illumina NovaSeq 6000 system platform.         MU 3M   breed:TU|age:3 mpf|dev stage:Adult|sex:not collected|tissue:Intestine|birth date:2020 07 08|collection date:2020 10 15|death date:2020 10 15|genotype:chs1 / |health state:health|sample type:tissue sample|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult gut MU 3M rep2 MU 3M rep2 Adults Danio rerio were euthanized by MS 222 whole intestines were collected from the abdomen region. Total RNA was extracted using TRIzol Plus RNA Purification Kit. cDNA libraries were generated by Oligo dT for sequencing.     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP346689   loader:fastq load.py|options: doNotUseSharq allowEarlyFileEnd maxErrorCount=0 Daniorerio_3months_MU2-T02_good_1.fq.gz Daniorerio_3months_MU2-T02_good_2.fq.gz fastq fastq 7319481642.0 24455109.0 Daniorerio 3months MU2 T02 good 1.fq.gz 0:149.65 1:149.65 A:1950119505;C:1698268609;G:1716794920;T:1954208020;N:90588 149 149     1950119505 1698268609 1716794920 1954208020 90588 SRX13163292 SRS11094635 SRA1330971 Sun Yat-sen University|School of Life Sciences Sun Yat-sen University 2 0.91605 0.91629 0.07171 0.0721 0.73099 0.73277 0.51829 0.51094 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2021-11-19 Adult Adult Gut Digestive System
67015 67015 SRR16972435 SRX13163291 SRS11094635 SRP346689 PRJNA781427 RNA Seq analysis of wild type and chs1 / zebrafish gut PRJNA781427 Other To investigate the mRNA expression profiles in the intestine of wild type and chitin synthase 1 knock out chs1 / zebrafish extracted total RNA of intestine from samples of different ages to generate cDNA libraries and sequenced using Illumina NovaSeq 6000 system platform.         MU 3M   breed:TU|age:3 mpf|dev stage:Adult|sex:not collected|tissue:Intestine|birth date:2020 07 08|collection date:2020 10 15|death date:2020 10 15|genotype:chs1 / |health state:health|sample type:tissue sample|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult gut MU 3M rep1 MU 3M rep1 Adults Danio rerio were euthanized by MS 222 whole intestines were collected from the abdomen region. Total RNA was extracted using TRIzol Plus RNA Purification Kit. cDNA libraries were generated by Oligo dT for sequencing.     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP346689   loader:fastq load.py|options: doNotUseSharq allowEarlyFileEnd maxErrorCount=0 Daniorerio_3months_MU1-T01_good_1.fq.gz Daniorerio_3months_MU1-T01_good_2.fq.gz fastq fastq 6689783730.0 22374730.0 Daniorerio 3months MU1 T01 good 1.fq.gz 0:149.49 1:149.49 A:1791825331;C:1543674432;G:1559586766;T:1794614998;N:82203 149 149     1791825331 1543674432 1559586766 1794614998 82203 SRX13163291 SRS11094635 SRA1330971 Sun Yat-sen University|School of Life Sciences Sun Yat-sen University 2 0.89988 0.90023 0.07447 0.07414 0.73318 0.7347 0.52608 0.52855 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2021-11-19 Adult Adult Gut Digestive System
67016 67016 SRR16972436 SRX13163290 SRS11094634 SRP346689 PRJNA781427 RNA Seq analysis of wild type and chs1 / zebrafish gut PRJNA781427 Other To investigate the mRNA expression profiles in the intestine of wild type and chitin synthase 1 knock out chs1 / zebrafish extracted total RNA of intestine from samples of different ages to generate cDNA libraries and sequenced using Illumina NovaSeq 6000 system platform.         SMU 6M   breed:TU|age:6 mpf|dev stage:Adult|sex:not collected|tissue:Intestine|birth date:2020 07 08|collection date:2020 12 29|death date:2020 12 29|genotype:chs1 / |health state:sick|sample type:tissue sample|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult gut SMU 6M rep2 SMU 6M rep2 Adults Danio rerio were euthanized by MS 222 whole intestines were collected from the abdomen region. Total RNA was extracted using TRIzol Plus RNA Purification Kit. cDNA libraries were generated by Oligo dT for sequencing.     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP346689   loader:fastq load.py|options: doNotUseSharq allowEarlyFileEnd maxErrorCount=0 Daniorerio_6months_SMU2-T09_good_1.fq.gz Daniorerio_6months_SMU2-T09_good_2.fq.gz fastq fastq 6153057638.0 20567236.0 Daniorerio 6months SMU2 T09 good 1.fq.gz 0:149.58 1:149.58 A:1623915064;C:1438971834;G:1466951426;T:1623205362;N:13952 149 149     1623915064 1438971834 1466951426 1623205362 13952 SRX13163290 SRS11094634 SRA1330971 Sun Yat-sen University|School of Life Sciences Sun Yat-sen University 2 0.89898 0.89771 0.08023 0.07995 0.715 0.71648 0.49782 0.48134 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2021-11-19 Adult Adult Gut Digestive System
67017 67017 SRR16972437 SRX13163289 SRS11094634 SRP346689 PRJNA781427 RNA Seq analysis of wild type and chs1 / zebrafish gut PRJNA781427 Other To investigate the mRNA expression profiles in the intestine of wild type and chitin synthase 1 knock out chs1 / zebrafish extracted total RNA of intestine from samples of different ages to generate cDNA libraries and sequenced using Illumina NovaSeq 6000 system platform.         SMU 6M   breed:TU|age:6 mpf|dev stage:Adult|sex:not collected|tissue:Intestine|birth date:2020 07 08|collection date:2020 12 29|death date:2020 12 29|genotype:chs1 / |health state:sick|sample type:tissue sample|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult gut SMU 6M rep1 SMU 6M rep1 Adults Danio rerio were euthanized by MS 222 whole intestines were collected from the abdomen region. Total RNA was extracted using TRIzol Plus RNA Purification Kit. cDNA libraries were generated by Oligo dT for sequencing.     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP346689   loader:fastq load.py|options: doNotUseSharq allowEarlyFileEnd maxErrorCount=0 Daniorerio_6months_SMU1-T08_good_1.fq.gz Daniorerio_6months_SMU1-T08_good_2.fq.gz fastq fastq 6402267634.0 21457841.0 Daniorerio 6months SMU1 T08 good 1.fq.gz 0:149.18 1:149.18 A:1705727400;C:1483728129;G:1516588316;T:1696209255;N:14534 149 149     1705727400 1483728129 1516588316 1696209255 14534 SRX13163289 SRS11094634 SRA1330971 Sun Yat-sen University|School of Life Sciences Sun Yat-sen University 2 0.92502 0.92362 0.09504 0.09399 0.69323 0.69568 0.4847 0.48708 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2021-11-19 Adult Adult Gut Digestive System
74161 74161 SRR23576625 SRX19463432 SRS16856055 SRP423783 PRJNA937311 Telomere elongation in the gut extends systemic healthspan of zebrafish PRJNA937311 Other Telomere shortening is a hallmark of aging and is counteracted by telomerase. zebrafish gut is one of the organs with the fastest rate of telomere decline. However whether telomere dependent aging of an individual organ the gut causes systemic aging remains unknown. Here we show that preventing telomere shortening in the gut through tissue specific telomerase expression rescues premature aging of tert / . Conclusively we show that gut specific telomerase expression extends lifespan of tert / by 40 % while ameliorating natural aging. Our work demonstrates that delaying telomere shortening in the gut is sufficient to systemically counteract aging in zebrafish.         M9   strain:AB|age:9 month|dev stage:adulte|sex:male|tissue:gut|biomaterial provider:EL MAI Mounir|birth date:2019/11/20|birth location:Nice France|treatment:gut WT R3|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult male gut M9 M9 RNA Seq of Danio rerio : adult male gut     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP423783     M9_1.fq.gz M9_2.fq.gz fastq fastq 10791781600.0 107917816.0 M9 1.fq.gz 0:100 1:100 A:2848108353;C:2487301410;G:2561260439;T:2895111398;N:0 100 100     2848108353 2487301410 2561260439 2895111398 0 SRX19463432 SRS16856055 SRA1593824 Sun Yat-sen University Cancer Center|State Key Laboratory of Oncology in South China Sun Yat-sen University Cancer Center Miguel Godinho Ferreira 1 0.95252   0.05974   0.79184   0.6274   100   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   China 2023-02-21 Adult Adult Gut Digestive System
74162 74162 SRR23576626 SRX19463431 SRS16856054 SRP423783 PRJNA937311 Telomere elongation in the gut extends systemic healthspan of zebrafish PRJNA937311 Other Telomere shortening is a hallmark of aging and is counteracted by telomerase. zebrafish gut is one of the organs with the fastest rate of telomere decline. However whether telomere dependent aging of an individual organ the gut causes systemic aging remains unknown. Here we show that preventing telomere shortening in the gut through tissue specific telomerase expression rescues premature aging of tert / . Conclusively we show that gut specific telomerase expression extends lifespan of tert / by 40 % while ameliorating natural aging. Our work demonstrates that delaying telomere shortening in the gut is sufficient to systemically counteract aging in zebrafish.         M8   strain:AB|age:9 month|dev stage:adulte|sex:male|tissue:gut|biomaterial provider:EL MAI Mounir|birth date:2019/11/20|birth location:Nice France|treatment:gut WT R2|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult male gut M8 M8 RNA Seq of Danio rerio : adult male gut     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP423783     M8_1.fq.gz M8_2.fq.gz fastq fastq 10803624400.0 108036244.0 M8 1.fq.gz 0:100 1:100 A:2826927335;C:2516499907;G:2585204327;T:2874992831;N:0 100 100     2826927335 2516499907 2585204327 2874992831 0 SRX19463431 SRS16856054 SRA1593824 Sun Yat-sen University Cancer Center|State Key Laboratory of Oncology in South China Sun Yat-sen University Cancer Center Miguel Godinho Ferreira 1 0.95494   0.06268   0.79139   0.60873   100   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   China 2023-02-21 Adult Adult Gut Digestive System
74163 74163 SRR23576627 SRX19463430 SRS16856053 SRP423783 PRJNA937311 Telomere elongation in the gut extends systemic healthspan of zebrafish PRJNA937311 Other Telomere shortening is a hallmark of aging and is counteracted by telomerase. zebrafish gut is one of the organs with the fastest rate of telomere decline. However whether telomere dependent aging of an individual organ the gut causes systemic aging remains unknown. Here we show that preventing telomere shortening in the gut through tissue specific telomerase expression rescues premature aging of tert / . Conclusively we show that gut specific telomerase expression extends lifespan of tert / by 40 % while ameliorating natural aging. Our work demonstrates that delaying telomere shortening in the gut is sufficient to systemically counteract aging in zebrafish.         M7   strain:AB|age:9 month|dev stage:adulte|sex:male|tissue:gut|biomaterial provider:EL MAI Mounir|birth date:2019/11/20|birth location:Nice France|treatment:gut WT R1|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult male gut M7 M7 RNA Seq of Danio rerio : adult male gut     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP423783     M7_1.fq.gz M7_2.fq.gz fastq fastq 10794944600.0 107949446.0 M7 1.fq.gz 0:100 1:100 A:2822800001;C:2515936087;G:2583221720;T:2872986792;N:0 100 100     2822800001 2515936087 2583221720 2872986792 0 SRX19463430 SRS16856053 SRA1593824 Sun Yat-sen University Cancer Center|State Key Laboratory of Oncology in South China Sun Yat-sen University Cancer Center Miguel Godinho Ferreira 1 0.95392   0.0552   0.78967   0.61766   100   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   China 2023-02-21 Adult Adult Gut Digestive System
74164 74164 SRR23576628 SRX19463429 SRS16856052 SRP423783 PRJNA937311 Telomere elongation in the gut extends systemic healthspan of zebrafish PRJNA937311 Other Telomere shortening is a hallmark of aging and is counteracted by telomerase. zebrafish gut is one of the organs with the fastest rate of telomere decline. However whether telomere dependent aging of an individual organ the gut causes systemic aging remains unknown. Here we show that preventing telomere shortening in the gut through tissue specific telomerase expression rescues premature aging of tert / . Conclusively we show that gut specific telomerase expression extends lifespan of tert / by 40 % while ameliorating natural aging. Our work demonstrates that delaying telomere shortening in the gut is sufficient to systemically counteract aging in zebrafish.         M6   strain:AB|age:9 month|dev stage:adulte|sex:male|tissue:gut|biomaterial provider:EL MAI Mounir|birth date:2019/11/20|birth location:Nice France|treatment:gut tert with Cre R3|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult male gut M6 M6 RNA Seq of Danio rerio : adult male gut     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP423783     M6_1.fq.gz M6_2.fq.gz fastq fastq 10806717200.0 108067172.0 M6 1.fq.gz 0:100 1:100 A:2872422644;C:2476696362;G:2537205428;T:2920392766;N:0 100 100     2872422644 2476696362 2537205428 2920392766 0 SRX19463429 SRS16856052 SRA1593824 Sun Yat-sen University Cancer Center|State Key Laboratory of Oncology in South China Sun Yat-sen University Cancer Center Miguel Godinho Ferreira 1 0.95383   0.06563   0.79293   0.63948   100   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   China 2023-02-21 Adult Adult Gut Digestive System
74165 74165 SRR23576629 SRX19463428 SRS16856051 SRP423783 PRJNA937311 Telomere elongation in the gut extends systemic healthspan of zebrafish PRJNA937311 Other Telomere shortening is a hallmark of aging and is counteracted by telomerase. zebrafish gut is one of the organs with the fastest rate of telomere decline. However whether telomere dependent aging of an individual organ the gut causes systemic aging remains unknown. Here we show that preventing telomere shortening in the gut through tissue specific telomerase expression rescues premature aging of tert / . Conclusively we show that gut specific telomerase expression extends lifespan of tert / by 40 % while ameliorating natural aging. Our work demonstrates that delaying telomere shortening in the gut is sufficient to systemically counteract aging in zebrafish.         M5   strain:AB|age:9 month|dev stage:adulte|sex:male|tissue:gut|biomaterial provider:EL MAI Mounir|birth date:2019/11/20|birth location:Nice France|treatment:gut tert with Cre R2|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult male gut M5 M5 RNA Seq of Danio rerio : adult male gut     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP423783     M5_1.fq.gz M5_2.fq.gz fastq fastq 10553024000.0 105530240.0 M5 1.fq.gz 0:100 1:100 A:2756587901;C:2467885042;G:2531072385;T:2797478672;N:0 100 100     2756587901 2467885042 2531072385 2797478672 0 SRX19463428 SRS16856051 SRA1593824 Sun Yat-sen University Cancer Center|State Key Laboratory of Oncology in South China Sun Yat-sen University Cancer Center Miguel Godinho Ferreira 1 0.95761   0.05754   0.79435   0.61791   100   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   China 2023-02-21 Adult Adult Gut Digestive System
74166 74166 SRR23576630 SRX19463427 SRS16856048 SRP423783 PRJNA937311 Telomere elongation in the gut extends systemic healthspan of zebrafish PRJNA937311 Other Telomere shortening is a hallmark of aging and is counteracted by telomerase. zebrafish gut is one of the organs with the fastest rate of telomere decline. However whether telomere dependent aging of an individual organ the gut causes systemic aging remains unknown. Here we show that preventing telomere shortening in the gut through tissue specific telomerase expression rescues premature aging of tert / . Conclusively we show that gut specific telomerase expression extends lifespan of tert / by 40 % while ameliorating natural aging. Our work demonstrates that delaying telomere shortening in the gut is sufficient to systemically counteract aging in zebrafish.         M4   strain:AB|age:9 month|dev stage:adulte|sex:male|tissue:gut|biomaterial provider:EL MAI Mounir|birth date:2019/11/20|birth location:Nice France|treatment:gut tert with Cre R1|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult male gut M4 M4 RNA Seq of Danio rerio : adult male gut     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP423783     M4_1.fq.gz M4_2.fq.gz fastq fastq 10821109400.0 108211094.0 M4 1.fq.gz 0:100 1:100 A:2853720356;C:2500021520;G:2567460910;T:2899906614;N:0 100 100     2853720356 2500021520 2567460910 2899906614 0 SRX19463427 SRS16856048 SRA1593824 Sun Yat-sen University Cancer Center|State Key Laboratory of Oncology in South China Sun Yat-sen University Cancer Center Miguel Godinho Ferreira 1 0.95171   0.0636   0.78644   0.61061   100   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   China 2023-02-21 Adult Adult Gut Digestive System
74174 74174 SRR23576638 SRX19463419 SRS16856040 SRP423783 PRJNA937311 Telomere elongation in the gut extends systemic healthspan of zebrafish PRJNA937311 Other Telomere shortening is a hallmark of aging and is counteracted by telomerase. zebrafish gut is one of the organs with the fastest rate of telomere decline. However whether telomere dependent aging of an individual organ the gut causes systemic aging remains unknown. Here we show that preventing telomere shortening in the gut through tissue specific telomerase expression rescues premature aging of tert / . Conclusively we show that gut specific telomerase expression extends lifespan of tert / by 40 % while ameliorating natural aging. Our work demonstrates that delaying telomere shortening in the gut is sufficient to systemically counteract aging in zebrafish.         M3   strain:AB|age:9 month|dev stage:adulte|sex:male|tissue:gut|biomaterial provider:EL MAI Mounir|birth date:2019/11/20|birth location:Nice France|treatment:gut tert without xxx R3|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult male gut M3 M3 RNA Seq of Danio rerio : adult male gut     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP423783     M3_1.fq.gz M3_2.fq.gz fastq fastq 10811204400.0 108112044.0 M3 1.fq.gz 0:100 1:100 A:2826338851;C:2514522241;G:2594843889;T:2875499419;N:0 100 100     2826338851 2514522241 2594843889 2875499419 0 SRX19463419 SRS16856040 SRA1593824 Sun Yat-sen University Cancer Center|State Key Laboratory of Oncology in South China Sun Yat-sen University Cancer Center Miguel Godinho Ferreira 1 0.95049   0.05611   0.79127   0.60997   100   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   China 2023-02-21 Adult Adult Gut Digestive System
74185 74185 SRR23576649 SRX19463408 SRS16856031 SRP423783 PRJNA937311 Telomere elongation in the gut extends systemic healthspan of zebrafish PRJNA937311 Other Telomere shortening is a hallmark of aging and is counteracted by telomerase. zebrafish gut is one of the organs with the fastest rate of telomere decline. However whether telomere dependent aging of an individual organ the gut causes systemic aging remains unknown. Here we show that preventing telomere shortening in the gut through tissue specific telomerase expression rescues premature aging of tert / . Conclusively we show that gut specific telomerase expression extends lifespan of tert / by 40 % while ameliorating natural aging. Our work demonstrates that delaying telomere shortening in the gut is sufficient to systemically counteract aging in zebrafish.         M2   strain:AB|age:9 month|dev stage:adulte|sex:male|tissue:gut|biomaterial provider:EL MAI Mounir|birth date:2019/11/20|birth location:Nice France|treatment:gut tert without xxx R2|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult male gut M2 M2 RNA Seq of Danio rerio : adult male gut     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP423783     M2_1.fq.gz M2_2.fq.gz fastq fastq 10784874600.0 107848746.0 M2 1.fq.gz 0:100 1:100 A:2800268243;C:2532669517;G:2601088355;T:2850848485;N:0 100 100     2800268243 2532669517 2601088355 2850848485 0 SRX19463408 SRS16856031 SRA1593824 Sun Yat-sen University Cancer Center|State Key Laboratory of Oncology in South China Sun Yat-sen University Cancer Center Miguel Godinho Ferreira 1 0.95513   0.05808   0.78171   0.60306   100   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   China 2023-02-21 Adult Adult Gut Digestive System
74186 74186 SRR23576650 SRX19463407 SRS16856030 SRP423783 PRJNA937311 Telomere elongation in the gut extends systemic healthspan of zebrafish PRJNA937311 Other Telomere shortening is a hallmark of aging and is counteracted by telomerase. zebrafish gut is one of the organs with the fastest rate of telomere decline. However whether telomere dependent aging of an individual organ the gut causes systemic aging remains unknown. Here we show that preventing telomere shortening in the gut through tissue specific telomerase expression rescues premature aging of tert / . Conclusively we show that gut specific telomerase expression extends lifespan of tert / by 40 % while ameliorating natural aging. Our work demonstrates that delaying telomere shortening in the gut is sufficient to systemically counteract aging in zebrafish.         M1   strain:AB|age:9 month|dev stage:adulte|sex:male|tissue:gut|biomaterial provider:EL MAI Mounir|birth date:2019/11/20|birth location:Nice France|treatment:gut tert without xxx R1|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : adult male gut M1 M1 RNA Seq of Danio rerio : adult male gut     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED BGISEQ BGISEQ-500   SRP423783     M1_1.fq.gz M1_2.fq.gz fastq fastq 10797666400.0 107976664.0 M1 1.fq.gz 0:100 1:100 A:2818869037;C:2522566664;G:2592727107;T:2863503592;N:0 100 100     2818869037 2522566664 2592727107 2863503592 0 SRX19463407 SRS16856030 SRA1593824 Sun Yat-sen University Cancer Center|State Key Laboratory of Oncology in South China Sun Yat-sen University Cancer Center Miguel Godinho Ferreira 1 0.95195   0.06111   0.78184   0.6129   100   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   China 2023-02-21 Adult Adult Gut Digestive System

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;