metadata: run_metadata: 25 rows where experiment.library_layout = "SINGLE", experiment.library_strategy = "ncRNA-Seq" and tissue

25 rows where experiment.library_layout = "SINGLE", experiment.library_strategy = "ncRNA-Seq" and tissue_curation = "Brain"

descending

Link	rowid ▼	run.accession	experiment.accession	sample.accession	study.accession	bioproject	study.title	study.alias	study.type	study.abstract	sample.title	sample.alias	sample.attributes	GEOsample.title	GEOsample.dataprocessing	GEOsample.source	GEOsample.extractprotocol	GEOsample.characteristics	GEOsample.accession	experiment.title	experiment.alias	experiment.design_description	experiment.library_construction_protocol	experiment.attributes	experiment.library_strategy	experiment.library_source	experiment.library_selection	experiment.library_layout	experiment.platform	experiment.instrument_model	experiment.study_ref	run.total_bases	run.total_spots	run.alias	run.read_lengths	run.base_counts	run.r1_length	run.Acount	run.Ccount	run.Gcount	run.Tcount	run.Ncount	run.experiment	run.pool_member	submission.accession	submission.srasource	submission.bioprojectsource	seqdetective.n_mates	seqdetective.mapping_rate.mate1	seqdetective.nofeature_rate.mate1	seqdetective.sparsity.mate1	seqdetective.pos_strand_rate.mate1	seqdetective.readlen.mate1	seqdetective.judgement.mate1	seqdetective.judgement.reason	platform_family	instrument_generation	read_bias	selection_class	prep_kit	sc_or_bulk	tech_class	technology	submission.bioprojectsource.country	earliest_date	devstage_curation	devstage_curation_coarse	tissue_curation	tissue_curation_coarse
48990	48990	SRR7612999	SRX4477699	SRS3602899	SRP155545	PRJNA483217	Sequencing of Danio rerio brain for 5 age groups	GSE117807	Transcriptome Analysis	Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.	NH FLI 156 ZF brain smallRNAseq	GSM3309607	source name:brain\|strain:AB JxT\xFC Tgpu.1:GFP\|tissue:brain\|age:3 years\|Sex:male	NH FLI 156 ZF brain smallRNAseq	Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.	brain	Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.	strain:AB JxT\xFC Tgpu.1:GFP\|tissue:brain\|age:3 years\|Sex:male	GSM3309607	GSM3309607: NH FLI 156 ZF brain smallRNAseq; Danio rerio; ncRNA Seq	GSM3309607	1	Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.	GEO Accession:GSM3309607	ncRNA-Seq	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	Illumina HiSeq 2500	SRP155545	681376400.0	13627528.0	GSM3309607 r1	0:50	A:149742268;C:163827889;G:200725169;T:167045618;N:35456	50	149742268	163827889	200725169	167045618	35456	SRX4477699	SRS3602899	SRA745937	GEO	Leibniz Institute for Age Research - Fritz Lipmann Institute	1	0.00576	0.00087	0.9959	0.70299	50	T	under 1.2% mapping rate	illumina	hiseq_era	unknown	size_fractionation	trueseq	bulk	unknown	unknown	Germany	2018-07-27	Adult	Adult	Brain	Nervous System
48991	48991	SRR7612998	SRX4477698	SRS3602898	SRP155545	PRJNA483217	Sequencing of Danio rerio brain for 5 age groups	GSE117807	Transcriptome Analysis	Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.	NH FLI 154 ZF brain smallRNAseq	GSM3309606	source name:brain\|strain:AB JxT\xFC Tgpu.1:GFP\|tissue:brain\|age:3 years\|Sex:male	NH FLI 154 ZF brain smallRNAseq	Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.	brain	Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.	strain:AB JxT\xFC Tgpu.1:GFP\|tissue:brain\|age:3 years\|Sex:male	GSM3309606	GSM3309606: NH FLI 154 ZF brain smallRNAseq; Danio rerio; ncRNA Seq	GSM3309606	1	Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.	GEO Accession:GSM3309606	ncRNA-Seq	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	Illumina HiSeq 2500	SRP155545	1196666100.0	23933322.0	GSM3309606 r1	0:50	A:243243770;C:320296221;G:371488432;T:261584801;N:52876	50	243243770	320296221	371488432	261584801	52876	SRX4477698	SRS3602898	SRA745937	GEO	Leibniz Institute for Age Research - Fritz Lipmann Institute	1	0.01627	0.00325	0.99293	0.7183	50	B	usable mapping rate	illumina	hiseq_era	unknown	size_fractionation	trueseq	bulk	unknown	unknown	Germany	2018-07-27	Adult	Adult	Brain	Nervous System
48992	48992	SRR7612997	SRX4477697	SRS3602897	SRP155545	PRJNA483217	Sequencing of Danio rerio brain for 5 age groups	GSE117807	Transcriptome Analysis	Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.	NH FLI 153 ZF brain smallRNAseq	GSM3309605	source name:brain\|strain:AB JxT\xFC Tgpu.1:GFP\|tissue:brain\|age:3 years\|Sex:male	NH FLI 153 ZF brain smallRNAseq	Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.	brain	Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.	strain:AB JxT\xFC Tgpu.1:GFP\|tissue:brain\|age:3 years\|Sex:male	GSM3309605	GSM3309605: NH FLI 153 ZF brain smallRNAseq; Danio rerio; ncRNA Seq	GSM3309605	1	Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.	GEO Accession:GSM3309605	ncRNA-Seq	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	Illumina HiSeq 2500	SRP155545	2123002650.0	42460053.0	GSM3309605 r1	0:50	A:461619025;C:513713514;G:623358074;T:524212056;N:99981	50	461619025	513713514	623358074	524212056	99981	SRX4477697	SRS3602897	SRA745937	GEO	Leibniz Institute for Age Research - Fritz Lipmann Institute	1	0.02759	0.00329	0.99287	0.62418	50	B	usable mapping rate	illumina	hiseq_era	unknown	size_fractionation	trueseq	bulk	unknown	unknown	Germany	2018-07-27	Adult	Adult	Brain	Nervous System
48993	48993	SRR7612996	SRX4477696	SRS3602896	SRP155545	PRJNA483217	Sequencing of Danio rerio brain for 5 age groups	GSE117807	Transcriptome Analysis	Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.	NH FLI 152 ZF brain smallRNAseq	GSM3309604	source name:brain\|strain:AB JxT\xFC Tgpu.1:GFP\|tissue:brain\|age:3 years\|Sex:male	NH FLI 152 ZF brain smallRNAseq	Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.	brain	Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.	strain:AB JxT\xFC Tgpu.1:GFP\|tissue:brain\|age:3 years\|Sex:male	GSM3309604	GSM3309604: NH FLI 152 ZF brain smallRNAseq; Danio rerio; ncRNA Seq	GSM3309604	1	Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.	GEO Accession:GSM3309604	ncRNA-Seq	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	Illumina HiSeq 2500	SRP155545	1434455750.0	28689115.0	GSM3309604 r1	0:50	A:283488481;C:381046485;G:446805516;T:323062667;N:52601	50	283488481	381046485	446805516	323062667	52601	SRX4477696	SRS3602896	SRA745937	GEO	Leibniz Institute for Age Research - Fritz Lipmann Institute	1	0.04109	0.00889	0.98786	0.73333	50	B	usable mapping rate	illumina	hiseq_era	unknown	size_fractionation	trueseq	bulk	unknown	unknown	Germany	2018-07-27	Adult	Adult	Brain	Nervous System
48994	48994	SRR7612995	SRX4477695	SRS3602895	SRP155545	PRJNA483217	Sequencing of Danio rerio brain for 5 age groups	GSE117807	Transcriptome Analysis	Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.	NH FLI 150 ZF brain smallRNAseq	GSM3309603	source name:brain\|strain:AB JxT\xFC Tgpu.1:GFP\|tissue:brain\|age:3 years\|Sex:male	NH FLI 150 ZF brain smallRNAseq	Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.	brain	Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.	strain:AB JxT\xFC Tgpu.1:GFP\|tissue:brain\|age:3 years\|Sex:male	GSM3309603	GSM3309603: NH FLI 150 ZF brain smallRNAseq; Danio rerio; ncRNA Seq	GSM3309603	1	Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.	GEO Accession:GSM3309603	ncRNA-Seq	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	Illumina HiSeq 2500	SRP155545	1338770950.0	26775419.0	GSM3309603 r1	0:50	A:269497925;C:353627074;G:405585207;T:310020028;N:40716	50	269497925	353627074	405585207	310020028	40716	SRX4477695	SRS3602895	SRA745937	GEO	Leibniz Institute for Age Research - Fritz Lipmann Institute	1	0.02887	0.00518	0.99052	0.68568	50	B	usable mapping rate	illumina	hiseq_era	unknown	size_fractionation	trueseq	bulk	unknown	unknown	Germany	2018-07-27	Adult	Adult	Brain	Nervous System
48995	48995	SRR7612994	SRX4477694	SRS3602894	SRP155545	PRJNA483217	Sequencing of Danio rerio brain for 5 age groups	GSE117807	Transcriptome Analysis	Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.	NH FLI 143 ZF brain smallRNAseq	GSM3309602	source name:brain\|strain:AB JxT\xFC\|tissue:brain\|age:2 years\|Sex:male	NH FLI 143 ZF brain smallRNAseq	Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.	brain	Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.	strain:AB JxT\xFC\|tissue:brain\|age:2 years\|Sex:male	GSM3309602	GSM3309602: NH FLI 143 ZF brain smallRNAseq; Danio rerio; ncRNA Seq	GSM3309602	1	Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.	GEO Accession:GSM3309602	ncRNA-Seq	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	Illumina HiSeq 2500	SRP155545	626017200.0	12520344.0	GSM3309602 r1	0:50	A:134906441;C:152023722;G:185947594;T:153106683;N:32760	50	134906441	152023722	185947594	153106683	32760	SRX4477694	SRS3602894	SRA745937	GEO	Leibniz Institute for Age Research - Fritz Lipmann Institute	1	0.00695	0.00127	0.99529	0.71945	50	T	under 1.2% mapping rate	illumina	hiseq_era	unknown	size_fractionation	trueseq	bulk	unknown	unknown	Germany	2018-07-27	Adult	Adult	Brain	Nervous System
48996	48996	SRR7612993	SRX4477693	SRS3602893	SRP155545	PRJNA483217	Sequencing of Danio rerio brain for 5 age groups	GSE117807	Transcriptome Analysis	Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.	NH FLI 142 ZF brain smallRNAseq	GSM3309601	source name:brain\|strain:AB JxT\xFC\|tissue:brain\|age:2 years\|Sex:male	NH FLI 142 ZF brain smallRNAseq	Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.	brain	Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.	strain:AB JxT\xFC\|tissue:brain\|age:2 years\|Sex:male	GSM3309601	GSM3309601: NH FLI 142 ZF brain smallRNAseq; Danio rerio; ncRNA Seq	GSM3309601	1	Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.	GEO Accession:GSM3309601	ncRNA-Seq	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	Illumina HiSeq 2500	SRP155545	602153350.0	12043067.0	GSM3309601 r1	0:50	A:130038217;C:144346274;G:180485776;T:147255994;N:27089	50	130038217	144346274	180485776	147255994	27089	SRX4477693	SRS3602893	SRA745937	GEO	Leibniz Institute for Age Research - Fritz Lipmann Institute	1	0.01383	0.002	0.99545	0.61426	50	B	usable mapping rate	illumina	hiseq_era	unknown	size_fractionation	trueseq	bulk	unknown	unknown	Germany	2018-07-27	Adult	Adult	Brain	Nervous System
48997	48997	SRR7612992	SRX4477692	SRS3602892	SRP155545	PRJNA483217	Sequencing of Danio rerio brain for 5 age groups	GSE117807	Transcriptome Analysis	Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.	NH FLI 140 ZF brain smallRNAseq	GSM3309600	source name:brain\|strain:AB JxT\xFC\|tissue:brain\|age:2 years\|Sex:male	NH FLI 140 ZF brain smallRNAseq	Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.	brain	Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.	strain:AB JxT\xFC\|tissue:brain\|age:2 years\|Sex:male	GSM3309600	GSM3309600: NH FLI 140 ZF brain smallRNAseq; Danio rerio; ncRNA Seq	GSM3309600	1	Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.	GEO Accession:GSM3309600	ncRNA-Seq	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	Illumina HiSeq 2500	SRP155545	1040923600.0	20818472.0	GSM3309600 r1	0:50	A:226013762;C:247845507;G:308453469;T:258569100;N:41762	50	226013762	247845507	308453469	258569100	41762	SRX4477692	SRS3602892	SRA745937	GEO	Leibniz Institute for Age Research - Fritz Lipmann Institute	1	0.01433	0.00292	0.99484	0.60865	50	B	usable mapping rate	illumina	hiseq_era	unknown	size_fractionation	trueseq	bulk	unknown	unknown	Germany	2018-07-27	Adult	Adult	Brain	Nervous System
48998	48998	SRR7612991	SRX4477691	SRS3602891	SRP155545	PRJNA483217	Sequencing of Danio rerio brain for 5 age groups	GSE117807	Transcriptome Analysis	Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.	NH FLI 139 ZF brain smallRNAseq	GSM3309599	source name:brain\|strain:AB JxT\xFC\|tissue:brain\|age:2 years\|Sex:male	NH FLI 139 ZF brain smallRNAseq	Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.	brain	Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.	strain:AB JxT\xFC\|tissue:brain\|age:2 years\|Sex:male	GSM3309599	GSM3309599: NH FLI 139 ZF brain smallRNAseq; Danio rerio; ncRNA Seq	GSM3309599	1	Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.	GEO Accession:GSM3309599	ncRNA-Seq	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	Illumina HiSeq 2500	SRP155545	612192100.0	12243842.0	GSM3309599 r1	0:50	A:133152501;C:147001376;G:181291514;T:150727221;N:19488	50	133152501	147001376	181291514	150727221	19488	SRX4477691	SRS3602891	SRA745937	GEO	Leibniz Institute for Age Research - Fritz Lipmann Institute	1	0.01776	0.00244	0.9945	0.59354	50	B	usable mapping rate	illumina	hiseq_era	unknown	size_fractionation	trueseq	bulk	unknown	unknown	Germany	2018-07-27	Adult	Adult	Brain	Nervous System
48999	48999	SRR7612990	SRX4477690	SRS3602890	SRP155545	PRJNA483217	Sequencing of Danio rerio brain for 5 age groups	GSE117807	Transcriptome Analysis	Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.	NH FLI 138 ZF brain smallRNAseq	GSM3309598	source name:brain\|strain:AB JxT\xFC\|tissue:brain\|age:2 years\|Sex:male	NH FLI 138 ZF brain smallRNAseq	Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.	brain	Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.	strain:AB JxT\xFC\|tissue:brain\|age:2 years\|Sex:male	GSM3309598	GSM3309598: NH FLI 138 ZF brain smallRNAseq; Danio rerio; ncRNA Seq	GSM3309598	1	Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.	GEO Accession:GSM3309598	ncRNA-Seq	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	Illumina HiSeq 2500	SRP155545	1205010900.0	24100218.0	GSM3309598 r1	0:50	A:254443623;C:292846390;G:362958072;T:294704148;N:58667	50	254443623	292846390	362958072	294704148	58667	SRX4477690	SRS3602890	SRA745937	GEO	Leibniz Institute for Age Research - Fritz Lipmann Institute	1	0.02329	0.00277	0.99442	0.57362	50	B	usable mapping rate	illumina	hiseq_era	unknown	size_fractionation	trueseq	bulk	unknown	unknown	Germany	2018-07-27	Adult	Adult	Brain	Nervous System
49000	49000	SRR7612989	SRX4477689	SRS3602889	SRP155545	PRJNA483217	Sequencing of Danio rerio brain for 5 age groups	GSE117807	Transcriptome Analysis	Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.	NH FLI 129 ZF brain smallRNAseq	GSM3309597	source name:brain\|strain:AB JxT\xFC Tgflk:mCherry\|tissue:brain\|age:1 year\|Sex:male	NH FLI 129 ZF brain smallRNAseq	Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.	brain	Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.	strain:AB JxT\xFC Tgflk:mCherry\|tissue:brain\|age:1 year\|Sex:male	GSM3309597	GSM3309597: NH FLI 129 ZF brain smallRNAseq; Danio rerio; ncRNA Seq	GSM3309597	1	Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.	GEO Accession:GSM3309597	ncRNA-Seq	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	Illumina HiSeq 2500	SRP155545	905166650.0	18103333.0	GSM3309597 r1	0:50	A:183798257;C:231083843;G:277164667;T:213076607;N:43276	50	183798257	231083843	277164667	213076607	43276	SRX4477689	SRS3602889	SRA745937	GEO	Leibniz Institute for Age Research - Fritz Lipmann Institute	1	0.03359	0.00484	0.99105	0.62836	50	B	usable mapping rate	illumina	hiseq_era	unknown	size_fractionation	trueseq	bulk	unknown	unknown	Germany	2018-07-27	Adult	Adult	Brain	Nervous System
49001	49001	SRR7612988	SRX4477688	SRS3602888	SRP155545	PRJNA483217	Sequencing of Danio rerio brain for 5 age groups	GSE117807	Transcriptome Analysis	Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.	NH FLI 128 ZF brain smallRNAseq	GSM3309596	source name:brain\|strain:AB JxT\xFC Tgflk:mCherry\|tissue:brain\|age:1 year\|Sex:male	NH FLI 128 ZF brain smallRNAseq	Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.	brain	Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.	strain:AB JxT\xFC Tgflk:mCherry\|tissue:brain\|age:1 year\|Sex:male	GSM3309596	GSM3309596: NH FLI 128 ZF brain smallRNAseq; Danio rerio; ncRNA Seq	GSM3309596	1	Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.	GEO Accession:GSM3309596	ncRNA-Seq	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	Illumina HiSeq 2500	SRP155545	1304729150.0	26094583.0	GSM3309596 r1	0:50	A:261793442;C:350134689;G:395019822;T:297741148;N:40049	50	261793442	350134689	395019822	297741148	40049	SRX4477688	SRS3602888	SRA745937	GEO	Leibniz Institute for Age Research - Fritz Lipmann Institute	1	0.02649	0.00457	0.99038	0.65849	50	B	usable mapping rate	illumina	hiseq_era	unknown	size_fractionation	trueseq	bulk	unknown	unknown	Germany	2018-07-27	Adult	Adult	Brain	Nervous System
49002	49002	SRR7612987	SRX4477687	SRS3602887	SRP155545	PRJNA483217	Sequencing of Danio rerio brain for 5 age groups	GSE117807	Transcriptome Analysis	Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.	NH FLI 127 ZF brain smallRNAseq	GSM3309595	source name:brain\|strain:AB JxT\xFC Tgflk:mCherry\|tissue:brain\|age:1 year\|Sex:male	NH FLI 127 ZF brain smallRNAseq	Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.	brain	Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.	strain:AB JxT\xFC Tgflk:mCherry\|tissue:brain\|age:1 year\|Sex:male	GSM3309595	GSM3309595: NH FLI 127 ZF brain smallRNAseq; Danio rerio; ncRNA Seq	GSM3309595	1	Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.	GEO Accession:GSM3309595	ncRNA-Seq	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	Illumina HiSeq 2500	SRP155545	1087717850.0	21754357.0	GSM3309595 r1	0:50	A:233191242;C:266842531;G:322704369;T:264927170;N:52538	50	233191242	266842531	322704369	264927170	52538	SRX4477687	SRS3602887	SRA745937	GEO	Leibniz Institute for Age Research - Fritz Lipmann Institute	1	0.02888	0.00371	0.99322	0.60352	50	B	usable mapping rate	illumina	hiseq_era	unknown	size_fractionation	trueseq	bulk	unknown	unknown	Germany	2018-07-27	Adult	Adult	Brain	Nervous System
49003	49003	SRR7612986	SRX4477686	SRS3602886	SRP155545	PRJNA483217	Sequencing of Danio rerio brain for 5 age groups	GSE117807	Transcriptome Analysis	Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.	NH FLI 125 ZF brain smallRNAseq	GSM3309594	source name:brain\|strain:AB JxT\xFC Tgflk:mCherry\|tissue:brain\|age:1 year\|Sex:male	NH FLI 125 ZF brain smallRNAseq	Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.	brain	Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.	strain:AB JxT\xFC Tgflk:mCherry\|tissue:brain\|age:1 year\|Sex:male	GSM3309594	GSM3309594: NH FLI 125 ZF brain smallRNAseq; Danio rerio; ncRNA Seq	GSM3309594	1	Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.	GEO Accession:GSM3309594	ncRNA-Seq	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	Illumina HiSeq 2500	SRP155545	745015250.0	14900305.0	GSM3309594 r1	0:50	A:160725228;C:177900490;G:219158125;T:187195853;N:35554	50	160725228	177900490	219158125	187195853	35554	SRX4477686	SRS3602886	SRA745937	GEO	Leibniz Institute for Age Research - Fritz Lipmann Institute	1	0.02669	0.00263	0.99348	0.564	50	B	usable mapping rate	illumina	hiseq_era	unknown	size_fractionation	trueseq	bulk	unknown	unknown	Germany	2018-07-27	Adult	Adult	Brain	Nervous System
49004	49004	SRR7612985	SRX4477685	SRS3602885	SRP155545	PRJNA483217	Sequencing of Danio rerio brain for 5 age groups	GSE117807	Transcriptome Analysis	Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.	NH FLI 124 ZF brain smallRNAseq	GSM3309593	source name:brain\|strain:AB JxT\xFC Tgflk:mCherry\|tissue:brain\|age:1 year\|Sex:male	NH FLI 124 ZF brain smallRNAseq	Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.	brain	Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.	strain:AB JxT\xFC Tgflk:mCherry\|tissue:brain\|age:1 year\|Sex:male	GSM3309593	GSM3309593: NH FLI 124 ZF brain smallRNAseq; Danio rerio; ncRNA Seq	GSM3309593	1	Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.	GEO Accession:GSM3309593	ncRNA-Seq	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	Illumina HiSeq 2500	SRP155545	1305373550.0	26107471.0	GSM3309593 r1	0:50	A:303613747;C:302726844;G:364736102;T:334233710;N:63147	50	303613747	302726844	364736102	334233710	63147	SRX4477685	SRS3602885	SRA745937	GEO	Leibniz Institute for Age Research - Fritz Lipmann Institute	1	0.03499	0.00371	0.99362	0.5891	50	B	usable mapping rate	illumina	hiseq_era	unknown	size_fractionation	trueseq	bulk	unknown	unknown	Germany	2018-07-27	Adult	Adult	Brain	Nervous System
49005	49005	SRR7612984	SRX4477684	SRS3602884	SRP155545	PRJNA483217	Sequencing of Danio rerio brain for 5 age groups	GSE117807	Transcriptome Analysis	Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.	NH FLI 114 ZF brain smallRNAseq	GSM3309592	source name:brain\|strain:AB JxT\xFC Tgwt1a:GFP\|tissue:brain\|age:3.5 years\|Sex:male	NH FLI 114 ZF brain smallRNAseq	Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.	brain	Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.	strain:AB JxT\xFC Tgwt1a:GFP\|tissue:brain\|age:3.5 years\|Sex:male	GSM3309592	GSM3309592: NH FLI 114 ZF brain smallRNAseq; Danio rerio; ncRNA Seq	GSM3309592	1	Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.	GEO Accession:GSM3309592	ncRNA-Seq	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	Illumina HiSeq 2500	SRP155545	722165700.0	14443314.0	GSM3309592 r1	0:50	A:158514262;C:171787722;G:214687494;T:177143548;N:32674	50	158514262	171787722	214687494	177143548	32674	SRX4477684	SRS3602884	SRA745937	GEO	Leibniz Institute for Age Research - Fritz Lipmann Institute	1	0.01251	0.00195	0.99584	0.60892	50	B	usable mapping rate	illumina	hiseq_era	unknown	size_fractionation	trueseq	bulk	unknown	unknown	Germany	2018-07-27	Adult	Adult	Brain	Nervous System
49006	49006	SRR7612983	SRX4477683	SRS3602883	SRP155545	PRJNA483217	Sequencing of Danio rerio brain for 5 age groups	GSE117807	Transcriptome Analysis	Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.	NH FLI 109 ZF brain smallRNAseq	GSM3309591	source name:brain\|strain:AB JxT\xFC Tgwt1a:GFP\|tissue:brain\|age:3.5 years\|Sex:male	NH FLI 109 ZF brain smallRNAseq	Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.	brain	Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.	strain:AB JxT\xFC Tgwt1a:GFP\|tissue:brain\|age:3.5 years\|Sex:male	GSM3309591	GSM3309591: NH FLI 109 ZF brain smallRNAseq; Danio rerio; ncRNA Seq	GSM3309591	1	Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.	GEO Accession:GSM3309591	ncRNA-Seq	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	Illumina HiSeq 2500	SRP155545	1295539450.0	25910789.0	GSM3309591 r1	0:50	A:292712777;C:309650541;G:373811139;T:319271810;N:93183	50	292712777	309650541	373811139	319271810	93183	SRX4477683	SRS3602883	SRA745937	GEO	Leibniz Institute for Age Research - Fritz Lipmann Institute	1	0.07779	0.00531	0.99431	0.5455	50	B	usable mapping rate	illumina	hiseq_era	unknown	size_fractionation	trueseq	bulk	unknown	unknown	Germany	2018-07-27	Adult	Adult	Brain	Nervous System
49007	49007	SRR7612982	SRX4477682	SRS3602882	SRP155545	PRJNA483217	Sequencing of Danio rerio brain for 5 age groups	GSE117807	Transcriptome Analysis	Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.	NH FLI 99 100 ZF brain smallRNAseq	GSM3309590	source name:brain\|strain:AB JxT\xFC\|tissue:brain\|age:6 month\|Sex:male	NH FLI 99 100 ZF brain smallRNAseq	Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.	brain	Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.	strain:AB JxT\xFC\|tissue:brain\|age:6 month\|Sex:male	GSM3309590	GSM3309590: NH FLI 99 100 ZF brain smallRNAseq; Danio rerio; ncRNA Seq	GSM3309590	1	Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.	GEO Accession:GSM3309590	ncRNA-Seq	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	Illumina HiSeq 2500	SRP155545	433373950.0	8667479.0	GSM3309590 r1	0:50	A:93001141;C:105441767;G:129717150;T:105194380;N:19512	50	93001141	105441767	129717150	105194380	19512	SRX4477682	SRS3602882	SRA745937	GEO	Leibniz Institute for Age Research - Fritz Lipmann Institute	1	0.01476	0.0021	0.99555	0.64442	50	B	usable mapping rate	illumina	hiseq_era	unknown	size_fractionation	trueseq	bulk	unknown	unknown	Germany	2018-07-27	Adult	Adult	Brain	Nervous System
49008	49008	SRR7612981	SRX4477681	SRS3602881	SRP155545	PRJNA483217	Sequencing of Danio rerio brain for 5 age groups	GSE117807	Transcriptome Analysis	Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.	NH FLI 97 98 ZF brain smallRNAseq	GSM3309589	source name:brain\|strain:AB JxT\xFC\|tissue:brain\|age:6 month\|Sex:male	NH FLI 97 98 ZF brain smallRNAseq	Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.	brain	Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.	strain:AB JxT\xFC\|tissue:brain\|age:6 month\|Sex:male	GSM3309589	GSM3309589: NH FLI 97 98 ZF brain smallRNAseq; Danio rerio; ncRNA Seq	GSM3309589	1	Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.	GEO Accession:GSM3309589	ncRNA-Seq	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	Illumina HiSeq 2500	SRP155545	510617150.0	10212343.0	GSM3309589 r1	0:50	A:110447838;C:121736402;G:152183388;T:126228958;N:20564	50	110447838	121736402	152183388	126228958	20564	SRX4477681	SRS3602881	SRA745937	GEO	Leibniz Institute for Age Research - Fritz Lipmann Institute	1	0.01519	0.00277	0.99409	0.63157	50	B	usable mapping rate	illumina	hiseq_era	unknown	size_fractionation	trueseq	bulk	unknown	unknown	Germany	2018-07-27	Adult	Adult	Brain	Nervous System
49009	49009	SRR7612980	SRX4477680	SRS3602880	SRP155545	PRJNA483217	Sequencing of Danio rerio brain for 5 age groups	GSE117807	Transcriptome Analysis	Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.	NH FLI 95 96 ZF brain smallRNAseq	GSM3309588	source name:brain\|strain:AB JxT\xFC\|tissue:brain\|age:6 month\|Sex:male	NH FLI 95 96 ZF brain smallRNAseq	Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.	brain	Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.	strain:AB JxT\xFC\|tissue:brain\|age:6 month\|Sex:male	GSM3309588	GSM3309588: NH FLI 95 96 ZF brain smallRNAseq; Danio rerio; ncRNA Seq	GSM3309588	1	Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.	GEO Accession:GSM3309588	ncRNA-Seq	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	Illumina HiSeq 2500	SRP155545	472516100.0	9450322.0	GSM3309588 r1	0:50	A:103765011;C:113400404;G:139267589;T:116067916;N:15180	50	103765011	113400404	139267589	116067916	15180	SRX4477680	SRS3602880	SRA745937	GEO	Leibniz Institute for Age Research - Fritz Lipmann Institute	1	0.01894	0.00292	0.99411	0.58808	50	B	usable mapping rate	illumina	hiseq_era	unknown	size_fractionation	trueseq	bulk	unknown	unknown	Germany	2018-07-27	Adult	Adult	Brain	Nervous System
49010	49010	SRR7612979	SRX4477679	SRS3602879	SRP155545	PRJNA483217	Sequencing of Danio rerio brain for 5 age groups	GSE117807	Transcriptome Analysis	Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.	NH FLI 116 ZF brain smallRNAseq	GSM3309587	source name:brain\|strain:AB JxT\xFC Tgwt1a:GFP\|tissue:brain\|age:3.5 years\|Sex:male	NH FLI 116 ZF brain smallRNAseq	Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.	brain	Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.	strain:AB JxT\xFC Tgwt1a:GFP\|tissue:brain\|age:3.5 years\|Sex:male	GSM3309587	GSM3309587: NH FLI 116 ZF brain smallRNAseq; Danio rerio; ncRNA Seq	GSM3309587	1	Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.	GEO Accession:GSM3309587	ncRNA-Seq	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	Illumina HiSeq 2500	SRP155545	715226800.0	14304536.0	GSM3309587 r1	0:50	A:159838696;C:168777427;G:208871390;T:177701320;N:37967	50	159838696	168777427	208871390	177701320	37967	SRX4477679	SRS3602879	SRA745937	GEO	Leibniz Institute for Age Research - Fritz Lipmann Institute	1	0.00535	0.00095	0.99677	0.70896	50	T	under 1.2% mapping rate	illumina	hiseq_era	unknown	size_fractionation	trueseq	bulk	unknown	unknown	Germany	2018-07-27	Adult	Adult	Brain	Nervous System
49011	49011	SRR7612978	SRX4477678	SRS3602878	SRP155545	PRJNA483217	Sequencing of Danio rerio brain for 5 age groups	GSE117807	Transcriptome Analysis	Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.	NH FLI 112 ZF brain smallRNAseq	GSM3309586	source name:brain\|strain:AB JxT\xFC Tgwt1a:GFP\|tissue:brain\|age:3.5 years\|Sex:male	NH FLI 112 ZF brain smallRNAseq	Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.	brain	Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.	strain:AB JxT\xFC Tgwt1a:GFP\|tissue:brain\|age:3.5 years\|Sex:male	GSM3309586	GSM3309586: NH FLI 112 ZF brain smallRNAseq; Danio rerio; ncRNA Seq	GSM3309586	1	Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.	GEO Accession:GSM3309586	ncRNA-Seq	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	Illumina HiSeq 2500	SRP155545	1026870700.0	20537414.0	GSM3309586 r1	0:50	A:221725135;C:249408204;G:304663061;T:251034143;N:40157	50	221725135	249408204	304663061	251034143	40157	SRX4477678	SRS3602878	SRA745937	GEO	Leibniz Institute for Age Research - Fritz Lipmann Institute	1	0.01708	0.00331	0.99354	0.66357	50	B	usable mapping rate	illumina	hiseq_era	unknown	size_fractionation	trueseq	bulk	unknown	unknown	Germany	2018-07-27	Adult	Adult	Brain	Nervous System
49012	49012	SRR7612977	SRX4477677	SRS3602877	SRP155545	PRJNA483217	Sequencing of Danio rerio brain for 5 age groups	GSE117807	Transcriptome Analysis	Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.	NH FLI 111 ZF brain smallRNAseq	GSM3309585	source name:brain\|strain:AB JxT\xFC Tgwt1a:GFP\|tissue:brain\|age:3.5 years\|Sex:male	NH FLI 111 ZF brain smallRNAseq	Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.	brain	Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.	strain:AB JxT\xFC Tgwt1a:GFP\|tissue:brain\|age:3.5 years\|Sex:male	GSM3309585	GSM3309585: NH FLI 111 ZF brain smallRNAseq; Danio rerio; ncRNA Seq	GSM3309585	1	Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.	GEO Accession:GSM3309585	ncRNA-Seq	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	Illumina HiSeq 2500	SRP155545	743568750.0	14871375.0	GSM3309585 r1	0:50	A:166161134;C:175989827;G:216120925;T:185273082;N:23782	50	166161134	175989827	216120925	185273082	23782	SRX4477677	SRS3602877	SRA745937	GEO	Leibniz Institute for Age Research - Fritz Lipmann Institute	1	0.01548	0.00239	0.99515	0.60786	50	B	usable mapping rate	illumina	hiseq_era	unknown	size_fractionation	trueseq	bulk	unknown	unknown	Germany	2018-07-27	Adult	Adult	Brain	Nervous System
49013	49013	SRR7612976	SRX4477676	SRS3602906	SRP155545	PRJNA483217	Sequencing of Danio rerio brain for 5 age groups	GSE117807	Transcriptome Analysis	Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.	NH FLI 103 104 ZF brain smallRNAseq	GSM3309584	source name:brain\|strain:AB JxT\xFC\|tissue:brain\|age:6 month\|Sex:male	NH FLI 103 104 ZF brain smallRNAseq	Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.	brain	Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.	strain:AB JxT\xFC\|tissue:brain\|age:6 month\|Sex:male	GSM3309584	GSM3309584: NH FLI 103 104 ZF brain smallRNAseq; Danio rerio; ncRNA Seq	GSM3309584	1	Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.	GEO Accession:GSM3309584	ncRNA-Seq	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	Illumina HiSeq 2500	SRP155545	1106423150.0	22128463.0	GSM3309584 r1	0:50	A:234017026;C:276221869;G:334967256;T:261138362;N:78637	50	234017026	276221869	334967256	261138362	78637	SRX4477676	SRS3602906	SRA745937	GEO	Leibniz Institute for Age Research - Fritz Lipmann Institute	1	0.07804	0.00455	0.99263	0.55094	50	B	usable mapping rate	illumina	hiseq_era	unknown	size_fractionation	trueseq	bulk	unknown	unknown	Germany	2018-07-27	Adult	Adult	Brain	Nervous System
49014	49014	SRR7612975	SRX4477675	SRS3602876	SRP155545	PRJNA483217	Sequencing of Danio rerio brain for 5 age groups	GSE117807	Transcriptome Analysis	Comparison of temporal small RNA gene expression profiles from Danio rerio brain. The smallRNA seq data comprise 5 age groups at 6 12 24 36 month and 42 month. Jena Centre for Systems Biology of Ageing JenAge www.jenage.de Overall design: 25 samples in 5 groups: 6 month 5 samples 12 month 5 samples 24 month 5 samples 36 month 5 samples 42 month 5 samples.	NH FLI 101 102 ZF brain smallRNAseq	GSM3309583	source name:brain\|strain:AB JxT\xFC\|tissue:brain\|age:6 month\|Sex:male	NH FLI 101 102 ZF brain smallRNAseq	Sequence information was extracted in FastQ format using CASAVA software 1.8.4 data processing step. Reads were trimmed und filtered using trimmomatic 0.36 [parameter: ILLUMINACLIP:smallRNAAdapter:2:6:6 LEADING:15 SLIDINGWINDOW:4:15 MINLEN:20]. Reads were mapped using BWA 0.7.12 r1039 [parameter: n 0 o 0 e 0 l 8 k 0]. Reads per gene were counted using samtools 1.3.1 9 ge5dfb0a. Genome build: mirBase Release 21 D. rerio sequences only Supplementary files format and content: The Excel file includes raw counts sample counts.xls of all mirBase D. rerio sequences for each sample.	brain	Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.	strain:AB JxT\xFC\|tissue:brain\|age:6 month\|Sex:male	GSM3309583	GSM3309583: NH FLI 101 102 ZF brain smallRNAseq; Danio rerio; ncRNA Seq	GSM3309583	1	Extraction was done as described in Baumgart et al. 2012. PMID:22487494 Library preparation was done using Illumina's TruSeq smallRNA Library Preparation Kit following the manufacturer's instruction.	GEO Accession:GSM3309583	ncRNA-Seq	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	Illumina HiSeq 2500	SRP155545	929857100.0	18597142.0	GSM3309583 r1	0:50	A:195349293;C:237069996;G:279453097;T:217936195;N:48519	50	195349293	237069996	279453097	217936195	48519	SRX4477675	SRS3602876	SRA745937	GEO	Leibniz Institute for Age Research - Fritz Lipmann Institute	1	0.01233	0.00233	0.99417	0.76993	50	B	usable mapping rate	illumina	hiseq_era	unknown	size_fractionation	trueseq	bulk	unknown	unknown	Germany	2018-07-27	Adult	Adult	Brain	Nervous System

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;