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263 rows where experiment.library_layout = "SINGLE", experiment.library_strategy = "RNA-Seq" and experiment.platform = "ION_TORRENT"

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tissue_curation 8

devstage_curation_coarse 5

experiment.library_selection 4

technology 2

experiment.platform 1

  • ION_TORRENT · 263 ✖

experiment.library_strategy 1

  • RNA-Seq · 263 ✖

experiment.library_source 1

experiment.library_layout 1

  • SINGLE · 263 ✖
Link rowid ▼ run.accession experiment.accession sample.accession study.accession bioproject study.title study.alias study.type study.abstract study.attributes study.PMIDs sample.description sample.title sample.alias sample.centername sample.attributes GEOsample.title GEOsample.dataprocessing GEOsample.source GEOsample.treatmentprotocol GEOsample.extractprotocol GEOsample.growthprotocol GEOsample.characteristics GEOsample.accession experiment.title experiment.alias experiment.library_name experiment.design_description experiment.library_construction_protocol experiment.attributes experiment.library_strategy experiment.library_source experiment.library_selection experiment.library_layout experiment.platform experiment.instrument_model experiment.spot_descriptor experiment.study_ref run.title run.attributes run.filename run.semantic_name run.total_bases run.total_spots run.alias run.read_lengths run.base_counts run.r1_length run.r2_length run.r3_length run.r4_length run.Acount run.Ccount run.Gcount run.Tcount run.Ncount run.experiment run.pool_member submission.accession submission.srasource submission.bioprojectsource seqdetective.n_mates seqdetective.mapping_rate.mate1 seqdetective.mapping_rate.mate2 seqdetective.nofeature_rate.mate1 seqdetective.nofeature_rate.mate2 seqdetective.sparsity.mate1 seqdetective.sparsity.mate2 seqdetective.pos_strand_rate.mate1 seqdetective.pos_strand_rate.mate2 seqdetective.readlen.mate1 seqdetective.readlen.mate2 seqdetective.judgement.mate1 seqdetective.judgement.mate2 seqdetective.judgement.reason platform_family instrument_generation read_bias selection_class prep_kit sc_or_bulk tech_class technology tech_variant submission.bioprojectsource.country earliest_date devstage_curation devstage_curation_coarse tissue_curation tissue_curation_coarse
95 95 DRR050167 DRX045209 DRS025834 DRP003043 PRJDB4416 Transcriptome analysis in ES1 expressing rods of zebrafish DRP003043 Transcriptome Analysis Transcriptome analysis using next generation sequencing system for isolated rods from zebrafish of wild type T?bingen long fin TL line. Transgenic zebrafish expressing ES1 and/or EGFP in rods were used.     Zebrafish rods expressing ES1 and EGFP ES1 3 SAMD00044057   sample name:ES1 EGFP rod 003|strain:Tubingen long fin|cell type:rod                 Ion Torrent PGM sequencing of SAMD00044057 DRX045209 1 1 1   RNA-Seq TRANSCRIPTOMIC cDNA SINGLE ION_TORRENT Ion Torrent PGM <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>105</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003043 Ion Torrent PGM sequencing of SAMD00044057       371748120.0 3469843.0 DRR050167 0:107.14 A:107190409;C:79475572;G:83520360;T:101561779;N:0 107       107190409 79475572 83520360 101561779 0 DRX045209 DRS025834 DRA004229 OSAKA_FB|Kawamura lab., Frontier Biology, Osaka univ. Osaka university 1 0.81026   0.26715   0.86953   0.52321   51   B   usable mapping rate ion_torrent ion_torrent unknown cdna_unspecified unknown bulk unknown unknown   Japan 2016-03-09 Undetermined Undetermined Fin Surface Structure
96 96 DRR050166 DRX045208 DRS025833 DRP003043 PRJDB4416 Transcriptome analysis in ES1 expressing rods of zebrafish DRP003043 Transcriptome Analysis Transcriptome analysis using next generation sequencing system for isolated rods from zebrafish of wild type T?bingen long fin TL line. Transgenic zebrafish expressing ES1 and/or EGFP in rods were used.     Zebrafish rods expressing ES1 and EGFP ES1 2 SAMD00044056   sample name:ES1 EGFP rod 002|strain:Tubingen long fin|cell type:rod                 Ion Torrent PGM sequencing of SAMD00044056 DRX045208 1 1 1   RNA-Seq TRANSCRIPTOMIC cDNA SINGLE ION_TORRENT Ion Torrent PGM <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>128</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003043 Ion Torrent PGM sequencing of SAMD00044056       425549011.0 3275261.0 DRR050166 0:129.93 A:126640704;C:86415371;G:90822163;T:121670773;N:0 129       126640704 86415371 90822163 121670773 0 DRX045208 DRS025833 DRA004229 OSAKA_FB|Kawamura lab., Frontier Biology, Osaka univ. Osaka university 1 0.80223   0.31429   0.85861   0.5272   57   B   usable mapping rate ion_torrent ion_torrent unknown cdna_unspecified unknown bulk unknown unknown   Japan 2016-03-09 Undetermined Undetermined Fin Surface Structure
97 97 DRR050165 DRX045207 DRS025832 DRP003043 PRJDB4416 Transcriptome analysis in ES1 expressing rods of zebrafish DRP003043 Transcriptome Analysis Transcriptome analysis using next generation sequencing system for isolated rods from zebrafish of wild type T?bingen long fin TL line. Transgenic zebrafish expressing ES1 and/or EGFP in rods were used.     Zebrafish rods expressing ES1 and EGFP ES1 1 SAMD00044055   sample name:ES1 EGFP rod 001|strain:Tubingen long fin|cell type:rod                 Ion Torrent PGM sequencing of SAMD00044055 DRX045207 1 1 1   RNA-Seq TRANSCRIPTOMIC cDNA SINGLE ION_TORRENT Ion Torrent PGM <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>147</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003043 Ion Torrent PGM sequencing of SAMD00044055       584599765.0 3941083.0 DRR050165 0:148.33 A:164329030;C:129885620;G:136727379;T:153657736;N:0 148       164329030 129885620 136727379 153657736 0 DRX045207 DRS025832 DRA004229 OSAKA_FB|Kawamura lab., Frontier Biology, Osaka univ. Osaka university 1 0.83769   0.25395   0.83116   0.52784   185   B   usable mapping rate ion_torrent ion_torrent unknown cdna_unspecified unknown bulk unknown unknown   Japan 2016-03-09 Undetermined Undetermined Fin Surface Structure
98 98 DRR050164 DRX045206 DRS025831 DRP003043 PRJDB4416 Transcriptome analysis in ES1 expressing rods of zebrafish DRP003043 Transcriptome Analysis Transcriptome analysis using next generation sequencing system for isolated rods from zebrafish of wild type T?bingen long fin TL line. Transgenic zebrafish expressing ES1 and/or EGFP in rods were used.     Zebrafish rods expressing EGFP EGFP 3 SAMD00044054   sample name:EGFP rod 003|strain:Tubingen long fin|cell type:rod                 Ion Torrent PGM sequencing of SAMD00044054 DRX045206 1 1 1   RNA-Seq TRANSCRIPTOMIC cDNA SINGLE ION_TORRENT Ion Torrent PGM <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>88</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003043 Ion Torrent PGM sequencing of SAMD00044054       343014114.0 3827762.0 DRR050164 0:89.61 A:99421434;C:73070267;G:77738821;T:92783592;N:0 89       99421434 73070267 77738821 92783592 0 DRX045206 DRS025831 DRA004229 OSAKA_FB|Kawamura lab., Frontier Biology, Osaka univ. Osaka university 1 0.78953   0.25529   0.87367   0.52148   24   B   usable mapping rate ion_torrent ion_torrent unknown cdna_unspecified unknown bulk unknown unknown   Japan 2016-03-09 Undetermined Undetermined Fin Surface Structure
99 99 DRR050163 DRX045205 DRS025830 DRP003043 PRJDB4416 Transcriptome analysis in ES1 expressing rods of zebrafish DRP003043 Transcriptome Analysis Transcriptome analysis using next generation sequencing system for isolated rods from zebrafish of wild type T?bingen long fin TL line. Transgenic zebrafish expressing ES1 and/or EGFP in rods were used.     Zebrafish rods expressing EGFP EGFP 2 SAMD00044053   sample name:EGFP rod 002|strain:Tubingen long fin|cell type:rod                 Ion Torrent PGM sequencing of SAMD00044053 DRX045205 1 1 1   RNA-Seq TRANSCRIPTOMIC cDNA SINGLE ION_TORRENT Ion Torrent PGM <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>137</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003043 Ion Torrent PGM sequencing of SAMD00044053       533069427.0 3824140.0 DRR050163 0:139.40 A:152608173;C:113928273;G:120051739;T:146481242;N:0 139       152608173 113928273 120051739 146481242 0 DRX045205 DRS025830 DRA004229 OSAKA_FB|Kawamura lab., Frontier Biology, Osaka univ. Osaka university 1 0.80412   0.26768   0.85338   0.52255   245   B   usable mapping rate ion_torrent ion_torrent unknown cdna_unspecified unknown bulk unknown unknown   Japan 2016-03-09 Undetermined Undetermined Fin Surface Structure
100 100 DRR050162 DRX045204 DRS025829 DRP003043 PRJDB4416 Transcriptome analysis in ES1 expressing rods of zebrafish DRP003043 Transcriptome Analysis Transcriptome analysis using next generation sequencing system for isolated rods from zebrafish of wild type T?bingen long fin TL line. Transgenic zebrafish expressing ES1 and/or EGFP in rods were used.     Zebrafish rods expressing EGFP EGFP 1 SAMD00044052   sample name:EGFP rod 001|strain:Tubingen long fin|cell type:rod                 Ion Torrent PGM sequencing of SAMD00044052 DRX045204 1 1 1   RNA-Seq TRANSCRIPTOMIC cDNA SINGLE ION_TORRENT Ion Torrent PGM <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>113</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003043 Ion Torrent PGM sequencing of SAMD00044052       478262965.0 4224064.0 DRR050162 0:113.22 A:136348264;C:104872341;G:113114502;T:123927858;N:0 113       136348264 104872341 113114502 123927858 0 DRX045204 DRS025829 DRA004229 OSAKA_FB|Kawamura lab., Frontier Biology, Osaka univ. Osaka university 1 0.86947   0.29839   0.83317   0.51453   80   B   usable mapping rate ion_torrent ion_torrent unknown cdna_unspecified unknown bulk unknown unknown   Japan 2016-03-09 Undetermined Undetermined Fin Surface Structure
282 282 DRR179616 DRX170142 DRS185505 DRP007318 PRJDB8340 Gene expression analysis of zebrafish fin melanophores and xanthophores. DRP007318 Other Pigment cells melanophores and xanthophores were collected from zebrafish fin. Total RNAs were extracted from each melanophore and xanthophore and cDNA libraries were prepared using SMARTer Ultra Low Input RNA Kit for Sequencing v3 and Ion Xpress Plus gDNA Fragment Library Preparation. The libraries were sequenced using the Ion PGM with Ion PGM OT2 400 kit and Ion PGM Sequencing 400 kit.     Biological replicate 2 Fin xanthophore 03 SAMD00172019   sample name:Zebrafish pigment cell 06|cell type:Xanthophore|collection date:2015 11 12|dev stage:Adult|genotype:Wild type|tissue:Caudal fin and anal fin                 Ion Torrent PGM sequencing of SAMD00172019 DRX170142 Zebrafish fin xanthophore 01 1 1   RNA-Seq TRANSCRIPTOMIC RT-PCR SINGLE ION_TORRENT Ion Torrent PGM <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>232</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP007318 Ion Torrent PGM sequencing of SAMD00172019       376558775.0 1624500.0 DRR179616 0:231.80 A:107837072;C:79508449;G:79372899;T:109840355;N:0 231       107837072 79508449 79372899 109840355 0 DRX170142 DRS185505 DRA008445 OSAKA_FB|Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University 1 0.86944   0.10951   0.90425   0.59385   311   B   usable mapping rate ion_torrent ion_torrent full_length other smarter bulk unknown unknown   Japan 2021-05-21 Adult Adult Fin Surface Structure
283 283 DRR179615 DRX170141 DRS185504 DRP007318 PRJDB8340 Gene expression analysis of zebrafish fin melanophores and xanthophores. DRP007318 Other Pigment cells melanophores and xanthophores were collected from zebrafish fin. Total RNAs were extracted from each melanophore and xanthophore and cDNA libraries were prepared using SMARTer Ultra Low Input RNA Kit for Sequencing v3 and Ion Xpress Plus gDNA Fragment Library Preparation. The libraries were sequenced using the Ion PGM with Ion PGM OT2 400 kit and Ion PGM Sequencing 400 kit.     Biological replicate 1 Fin xanthophore 02 SAMD00172018   sample name:Zebrafish pigment cell 05|cell type:Xanthophore|collection date:2015 09 10|dev stage:Adult|genotype:Wild type|tissue:Caudal fin and anal fin                 Ion Torrent PGM sequencing of SAMD00172018 DRX170141 Zebrafish fin xanthophore 01 1 1   RNA-Seq TRANSCRIPTOMIC RT-PCR SINGLE ION_TORRENT Ion Torrent PGM <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>243</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP007318 Ion Torrent PGM sequencing of SAMD00172018       515115515.0 2124170.0 DRR179615 0:242.50 A:138421982;C:119032803;G:119412227;T:138248503;N:0 242       138421982 119032803 119412227 138248503 0 DRX170141 DRS185504 DRA008445 OSAKA_FB|Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University 1 0.88998   0.05858   0.88051   0.50917   284   B   usable mapping rate ion_torrent ion_torrent full_length other smarter bulk unknown unknown   Japan 2021-05-21 Adult Adult Fin Surface Structure
284 284 DRR179614 DRX170140 DRS185503 DRP007318 PRJDB8340 Gene expression analysis of zebrafish fin melanophores and xanthophores. DRP007318 Other Pigment cells melanophores and xanthophores were collected from zebrafish fin. Total RNAs were extracted from each melanophore and xanthophore and cDNA libraries were prepared using SMARTer Ultra Low Input RNA Kit for Sequencing v3 and Ion Xpress Plus gDNA Fragment Library Preparation. The libraries were sequenced using the Ion PGM with Ion PGM OT2 400 kit and Ion PGM Sequencing 400 kit.     Biological replicate 1 Fin xanthophore 01 SAMD00172017   sample name:Zebrafish pigment cell 04|cell type:Xanthophore|collection date:2015 09 10|dev stage:Adult|genotype:Wild type|tissue:Caudal fin and anal fin                 Ion Torrent PGM sequencing of SAMD00172017 DRX170140 Zebrafish fin xanthophore 01 1 1   RNA-Seq TRANSCRIPTOMIC RT-PCR SINGLE ION_TORRENT Ion Torrent PGM <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>247</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP007318 Ion Torrent PGM sequencing of SAMD00172017       371242152.0 1504407.0 DRR179614 0:246.77 A:99341086;C:86126839;G:86264882;T:99509345;N:0 246       99341086 86126839 86264882 99509345 0 DRX170140 DRS185503 DRA008445 OSAKA_FB|Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University 1 0.88672   0.06422   0.85679   0.5066   56   B   usable mapping rate ion_torrent ion_torrent full_length other smarter bulk unknown unknown   Japan 2021-05-21 Adult Adult Fin Surface Structure
285 285 DRR179613 DRX170139 DRS185502 DRP007318 PRJDB8340 Gene expression analysis of zebrafish fin melanophores and xanthophores. DRP007318 Other Pigment cells melanophores and xanthophores were collected from zebrafish fin. Total RNAs were extracted from each melanophore and xanthophore and cDNA libraries were prepared using SMARTer Ultra Low Input RNA Kit for Sequencing v3 and Ion Xpress Plus gDNA Fragment Library Preparation. The libraries were sequenced using the Ion PGM with Ion PGM OT2 400 kit and Ion PGM Sequencing 400 kit.     Biological replicate 2 Fin melanophore 03 SAMD00172016   sample name:Zebrafish pigment cell 03|cell type:Melanophore|collection date:2015 11 12|dev stage:Adult|genotype:Wild type|tissue:Caudal fin and anal fin                 Ion Torrent PGM sequencing of SAMD00172016 DRX170139 Zebrafish fin melanophore 03 1 1   RNA-Seq TRANSCRIPTOMIC RT-PCR SINGLE ION_TORRENT Ion Torrent PGM <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>248</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP007318 Ion Torrent PGM sequencing of SAMD00172016       342802993.0 1585538.0 DRR179613 0:216.21 A:90833658;C:80789744;G:80463233;T:90716358;N:0 216       90833658 80789744 80463233 90716358 0 DRX170139 DRS185502 DRA008445 OSAKA_FB|Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University 1 0.8312   0.03528   0.88605   0.47299   285   B   usable mapping rate ion_torrent ion_torrent full_length other smarter bulk unknown unknown   Japan 2021-05-21 Adult Adult Fin Surface Structure
286 286 DRR179612 DRX170138 DRS185501 DRP007318 PRJDB8340 Gene expression analysis of zebrafish fin melanophores and xanthophores. DRP007318 Other Pigment cells melanophores and xanthophores were collected from zebrafish fin. Total RNAs were extracted from each melanophore and xanthophore and cDNA libraries were prepared using SMARTer Ultra Low Input RNA Kit for Sequencing v3 and Ion Xpress Plus gDNA Fragment Library Preparation. The libraries were sequenced using the Ion PGM with Ion PGM OT2 400 kit and Ion PGM Sequencing 400 kit.     Biological replicate 1 Fin melanophore 02 SAMD00172015   sample name:Zebrafish pigment cell 02|cell type:Melanophore|collection date:2015 05 12|dev stage:Adult|genotype:Wild type|tissue:Caudal fin and anal fin                 Ion Torrent PGM sequencing of SAMD00172015 DRX170138 Zebrafish fin melanophore 02 1 1   RNA-Seq TRANSCRIPTOMIC RT-PCR SINGLE ION_TORRENT Ion Torrent PGM <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>216</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP007318 Ion Torrent PGM sequencing of SAMD00172015       538412675.0 2168231.0 DRR179612 0:248.32 A:147128403;C:121854818;G:121564109;T:147865345;N:0 248       147128403 121854818 121564109 147865345 0 DRX170138 DRS185501 DRA008445 OSAKA_FB|Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University 1 0.89106   0.07081   0.89286   0.5935   283   B   usable mapping rate ion_torrent ion_torrent full_length other smarter bulk unknown unknown   Japan 2021-05-21 Adult Adult Fin Surface Structure
287 287 DRR179611 DRX170137 DRS185500 DRP007318 PRJDB8340 Gene expression analysis of zebrafish fin melanophores and xanthophores. DRP007318 Other Pigment cells melanophores and xanthophores were collected from zebrafish fin. Total RNAs were extracted from each melanophore and xanthophore and cDNA libraries were prepared using SMARTer Ultra Low Input RNA Kit for Sequencing v3 and Ion Xpress Plus gDNA Fragment Library Preparation. The libraries were sequenced using the Ion PGM with Ion PGM OT2 400 kit and Ion PGM Sequencing 400 kit.     Biological replicate 1 Fin melanophore 01 SAMD00172014   sample name:Zebrafish pigment cell 01|cell type:Melanophore|collection date:2015 05 12|dev stage:Adult|genotype:Wild type|tissue:Caudal fin and anal fin                 Ion Torrent PGM sequencing of SAMD00172014 DRX170137 Zebrafish fin melanophore 01 1 1   RNA-Seq TRANSCRIPTOMIC RT-PCR SINGLE ION_TORRENT Ion Torrent PGM <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>215</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP007318 Ion Torrent PGM sequencing of SAMD00172014       282446840.0 1311431.0 DRR179611 0:215.37 A:74927237;C:66575483;G:66161471;T:74782649;N:0 215       74927237 66575483 66161471 74782649 0 DRX170137 DRS185500 DRA008445 OSAKA_FB|Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University 1 0.85938   0.0335   0.89248   0.58813   274   B   usable mapping rate ion_torrent ion_torrent full_length other smarter bulk unknown unknown   Japan 2021-05-21 Adult Adult Fin Surface Structure
5795 5795 ERR1698352 ERX1767860 ERS1417534 ERP018188 PRJEB16335 RNA seq of the zebrafish danio rerio brain post developmental exposure to 17a ethinylestradiol E-MTAB-5173 Transcriptome Analysis 17a ethinylestradiol EE2 is a synthetic estrogen commonly used as an active substance in oral contraceptives. It is frequently found in waste water effluent and raise concern due to its persistent nature. EE2 binds to estrogen receptors with similar affinity to oestradiol and acts as one of the most potent hormone mimics found in the environment. Estrogen is involved in many aspects of the development of the neuroendocrine system influencing both brain structure and behavior. We and others have reported a significant effect on non reproductive behaviors in adult fish and in recent studies we found that developmental exposure to EE2 resulted in an anxiogenic phenotype as adults even post a long remediation period. In this study we aim to study possible mechanisms behind the behavior alterations of zebrafish developmentally exposed to EE2 by sequencing the whole brain transcriptome. Zebrafish embryos were exposed to 0 2.14 and 7.34 ng/L EE2 from 1 day to 80 dpf post the exposure period a remediation period of 120 days followed before the fish were sampled. 3 male brains from the control group 0 ng/L and the 2.14 ng/L group were sampled and 3 female brains from the control group 0 ng/L and 7.34 ng/L were sampled. ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2016 10 19|ArrayExpress:E MTAB 5173   Protocols: RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich Germany EE2 exposure. Fish exposed to 0 2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA IonXpressRNA 012 up 058 12 SAMEA4518355 School of Natural Science, Technology and Environmental Studies Sodertorn University ENA first public:2017 10 02|ENA last update:2016 10 19|External Id:SAMEA4518355|INSDC center alias:School of Natural Science Technology and Environmental Studies Sodertorn University|INSDC center name:School of Natural Science Technology and Environmental Studies Sodertorn University|INSDC first public:2017 10 02T17:05:16Z|INSDC last update:2016 10 19T13:53:59Z|INSDC status:public|Submitter Id:E MTAB 5173:IonXpressRNA 012 up 058 12|age:200|broker name:ArrayExpress|common name:zebrafish|organism part:brain|sample name:E MTAB 5173:IonXpressRNA 012 up 058 12|sex:male                 Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol E MTAB 5173:IonXpressRNA 012 up 058 12 s IonXpressRNA 012 up 058 12 s RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich Germany EE2 exposure. Fish exposed to 0 2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA Experimental Factor: male:sex|Experimental Factor: 17 ethinylestradiol:compound|Experimental Factor: 2.14:dose RNA-Seq TRANSCRIPTOMIC RANDOM SINGLE ION_TORRENT Ion Torrent Proton   ERP018188 Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2018 11 16 IonXpressRNA_012_up_058_12.fastq.gz fastq 2535299006.0 33956077.0 E MTAB 5173:IonXpressRNA 012 up 058 12 0:74.66 A:719061985;C:581906269;G:579932234;T:654398518;N:0 74       719061985 581906269 579932234 654398518 0 ERX1767860 ERS1417534 ERA739176 School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive 1 0.7343   0.34119   0.7359   0.48406   66   B   usable mapping rate ion_torrent ion_torrent full_length random_priming ribozero bulk unknown unknown   Sweden 2016-10-19 Pharyngula Embryo Brain Nervous System
5796 5796 ERR1698351 ERX1767859 ERS1417533 ERP018188 PRJEB16335 RNA seq of the zebrafish danio rerio brain post developmental exposure to 17a ethinylestradiol E-MTAB-5173 Transcriptome Analysis 17a ethinylestradiol EE2 is a synthetic estrogen commonly used as an active substance in oral contraceptives. It is frequently found in waste water effluent and raise concern due to its persistent nature. EE2 binds to estrogen receptors with similar affinity to oestradiol and acts as one of the most potent hormone mimics found in the environment. Estrogen is involved in many aspects of the development of the neuroendocrine system influencing both brain structure and behavior. We and others have reported a significant effect on non reproductive behaviors in adult fish and in recent studies we found that developmental exposure to EE2 resulted in an anxiogenic phenotype as adults even post a long remediation period. In this study we aim to study possible mechanisms behind the behavior alterations of zebrafish developmentally exposed to EE2 by sequencing the whole brain transcriptome. Zebrafish embryos were exposed to 0 2.14 and 7.34 ng/L EE2 from 1 day to 80 dpf post the exposure period a remediation period of 120 days followed before the fish were sampled. 3 male brains from the control group 0 ng/L and the 2.14 ng/L group were sampled and 3 female brains from the control group 0 ng/L and 7.34 ng/L were sampled. ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2016 10 19|ArrayExpress:E MTAB 5173   Protocols: RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich Germany EE2 exposure. Fish exposed to 0 2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA IonXpressRNA 011 up 058 11 SAMEA4518354 School of Natural Science, Technology and Environmental Studies Sodertorn University ENA first public:2017 10 02|ENA last update:2016 10 19|External Id:SAMEA4518354|INSDC center alias:School of Natural Science Technology and Environmental Studies Sodertorn University|INSDC center name:School of Natural Science Technology and Environmental Studies Sodertorn University|INSDC first public:2017 10 02T17:05:16Z|INSDC last update:2016 10 19T13:53:59Z|INSDC status:public|Submitter Id:E MTAB 5173:IonXpressRNA 011 up 058 11|age:200|broker name:ArrayExpress|common name:zebrafish|organism part:brain|sample name:E MTAB 5173:IonXpressRNA 011 up 058 11|sex:male                 Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol E MTAB 5173:IonXpressRNA 011 up 058 11 s IonXpressRNA 011 up 058 11 s RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich Germany EE2 exposure. Fish exposed to 0 2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA Experimental Factor: male:sex|Experimental Factor: 17 ethinylestradiol:compound|Experimental Factor: 2.14:dose RNA-Seq TRANSCRIPTOMIC RANDOM SINGLE ION_TORRENT Ion Torrent Proton   ERP018188 Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2018 11 16 IonXpressRNA_011_up_058_11.fastq.gz fastq 3400774471.0 38709756.0 E MTAB 5173:IonXpressRNA 011 up 058 11 0:87.85 A:948991439;C:793389977;G:792539547;T:865853508;N:0 87       948991439 793389977 792539547 865853508 0 ERX1767859 ERS1417533 ERA739176 School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive 1 0.63968   0.27033   0.75213   0.47966   139   B   usable mapping rate ion_torrent ion_torrent full_length random_priming ribozero bulk unknown unknown   Sweden 2016-10-19 Pharyngula Embryo Brain Nervous System
5797 5797 ERR1698350 ERX1767858 ERS1417532 ERP018188 PRJEB16335 RNA seq of the zebrafish danio rerio brain post developmental exposure to 17a ethinylestradiol E-MTAB-5173 Transcriptome Analysis 17a ethinylestradiol EE2 is a synthetic estrogen commonly used as an active substance in oral contraceptives. It is frequently found in waste water effluent and raise concern due to its persistent nature. EE2 binds to estrogen receptors with similar affinity to oestradiol and acts as one of the most potent hormone mimics found in the environment. Estrogen is involved in many aspects of the development of the neuroendocrine system influencing both brain structure and behavior. We and others have reported a significant effect on non reproductive behaviors in adult fish and in recent studies we found that developmental exposure to EE2 resulted in an anxiogenic phenotype as adults even post a long remediation period. In this study we aim to study possible mechanisms behind the behavior alterations of zebrafish developmentally exposed to EE2 by sequencing the whole brain transcriptome. Zebrafish embryos were exposed to 0 2.14 and 7.34 ng/L EE2 from 1 day to 80 dpf post the exposure period a remediation period of 120 days followed before the fish were sampled. 3 male brains from the control group 0 ng/L and the 2.14 ng/L group were sampled and 3 female brains from the control group 0 ng/L and 7.34 ng/L were sampled. ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2016 10 19|ArrayExpress:E MTAB 5173   Protocols: RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich Germany EE2 exposure. Fish exposed to 0 2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA IonXpressRNA 010 up 058 10 SAMEA4518353 School of Natural Science, Technology and Environmental Studies Sodertorn University ENA first public:2017 10 02|ENA last update:2016 10 19|External Id:SAMEA4518353|INSDC center alias:School of Natural Science Technology and Environmental Studies Sodertorn University|INSDC center name:School of Natural Science Technology and Environmental Studies Sodertorn University|INSDC first public:2017 10 02T17:05:16Z|INSDC last update:2016 10 19T13:53:59Z|INSDC status:public|Submitter Id:E MTAB 5173:IonXpressRNA 010 up 058 10|age:200|broker name:ArrayExpress|common name:zebrafish|organism part:brain|sample name:E MTAB 5173:IonXpressRNA 010 up 058 10|sex:male                 Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol E MTAB 5173:IonXpressRNA 010 up 058 10 s IonXpressRNA 010 up 058 10 s RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich Germany EE2 exposure. Fish exposed to 0 2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA Experimental Factor: male:sex|Experimental Factor: 17 ethinylestradiol:compound|Experimental Factor: 2.14:dose RNA-Seq TRANSCRIPTOMIC RANDOM SINGLE ION_TORRENT Ion Torrent Proton   ERP018188 Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2018 11 16 IonXpressRNA_010_up_058_10.fastq.gz fastq 3502667998.0 39204781.0 E MTAB 5173:IonXpressRNA 010 up 058 10 0:89.34 A:976977303;C:803330255;G:808731995;T:913628445;N:0 89       976977303 803330255 808731995 913628445 0 ERX1767858 ERS1417532 ERA739176 School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive 1 0.65846   0.2815   0.74028   0.47784   86   B   usable mapping rate ion_torrent ion_torrent full_length random_priming ribozero bulk unknown unknown   Sweden 2016-10-19 Pharyngula Embryo Brain Nervous System
5798 5798 ERR1698349 ERX1767857 ERS1417531 ERP018188 PRJEB16335 RNA seq of the zebrafish danio rerio brain post developmental exposure to 17a ethinylestradiol E-MTAB-5173 Transcriptome Analysis 17a ethinylestradiol EE2 is a synthetic estrogen commonly used as an active substance in oral contraceptives. It is frequently found in waste water effluent and raise concern due to its persistent nature. EE2 binds to estrogen receptors with similar affinity to oestradiol and acts as one of the most potent hormone mimics found in the environment. Estrogen is involved in many aspects of the development of the neuroendocrine system influencing both brain structure and behavior. We and others have reported a significant effect on non reproductive behaviors in adult fish and in recent studies we found that developmental exposure to EE2 resulted in an anxiogenic phenotype as adults even post a long remediation period. In this study we aim to study possible mechanisms behind the behavior alterations of zebrafish developmentally exposed to EE2 by sequencing the whole brain transcriptome. Zebrafish embryos were exposed to 0 2.14 and 7.34 ng/L EE2 from 1 day to 80 dpf post the exposure period a remediation period of 120 days followed before the fish were sampled. 3 male brains from the control group 0 ng/L and the 2.14 ng/L group were sampled and 3 female brains from the control group 0 ng/L and 7.34 ng/L were sampled. ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2016 10 19|ArrayExpress:E MTAB 5173   Protocols: RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich Germany EE2 exposure. Fish exposed to 0 2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA IonXpressRNA 009 up 058 9 SAMEA4518352 School of Natural Science, Technology and Environmental Studies Sodertorn University ENA first public:2017 10 02|ENA last update:2016 10 19|External Id:SAMEA4518352|INSDC center alias:School of Natural Science Technology and Environmental Studies Sodertorn University|INSDC center name:School of Natural Science Technology and Environmental Studies Sodertorn University|INSDC first public:2017 10 02T17:05:16Z|INSDC last update:2016 10 19T13:53:59Z|INSDC status:public|Submitter Id:E MTAB 5173:IonXpressRNA 009 up 058 9|age:200|broker name:ArrayExpress|common name:zebrafish|organism part:brain|sample name:E MTAB 5173:IonXpressRNA 009 up 058 9|sex:male                 Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol E MTAB 5173:IonXpressRNA 009 up 058 9 s IonXpressRNA 009 up 058 9 s RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich Germany EE2 exposure. Fish exposed to 0 2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA Experimental Factor: male:sex|Experimental Factor: n1:compound RNA-Seq TRANSCRIPTOMIC RANDOM SINGLE ION_TORRENT Ion Torrent Proton   ERP018188 Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2018 11 16 IonXpressRNA_009_up_058_9.fastq.gz fastq 3575088264.0 39745481.0 E MTAB 5173:IonXpressRNA 009 up 058 9 0:89.95 A:1011474126;C:809896078;G:807471974;T:946246086;N:0 89       1011474126 809896078 807471974 946246086 0 ERX1767857 ERS1417531 ERA739176 School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive 1 0.65266   0.30274   0.75286   0.48527   94   B   usable mapping rate ion_torrent ion_torrent full_length random_priming ribozero bulk unknown unknown   Sweden 2016-10-19 Pharyngula Embryo Brain Nervous System
5799 5799 ERR1698348 ERX1767856 ERS1417530 ERP018188 PRJEB16335 RNA seq of the zebrafish danio rerio brain post developmental exposure to 17a ethinylestradiol E-MTAB-5173 Transcriptome Analysis 17a ethinylestradiol EE2 is a synthetic estrogen commonly used as an active substance in oral contraceptives. It is frequently found in waste water effluent and raise concern due to its persistent nature. EE2 binds to estrogen receptors with similar affinity to oestradiol and acts as one of the most potent hormone mimics found in the environment. Estrogen is involved in many aspects of the development of the neuroendocrine system influencing both brain structure and behavior. We and others have reported a significant effect on non reproductive behaviors in adult fish and in recent studies we found that developmental exposure to EE2 resulted in an anxiogenic phenotype as adults even post a long remediation period. In this study we aim to study possible mechanisms behind the behavior alterations of zebrafish developmentally exposed to EE2 by sequencing the whole brain transcriptome. Zebrafish embryos were exposed to 0 2.14 and 7.34 ng/L EE2 from 1 day to 80 dpf post the exposure period a remediation period of 120 days followed before the fish were sampled. 3 male brains from the control group 0 ng/L and the 2.14 ng/L group were sampled and 3 female brains from the control group 0 ng/L and 7.34 ng/L were sampled. ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2016 10 19|ArrayExpress:E MTAB 5173   Protocols: RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich Germany EE2 exposure. Fish exposed to 0 2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA IonXpressRNA 008 up 058 8 SAMEA4518351 School of Natural Science, Technology and Environmental Studies Sodertorn University ENA first public:2017 10 02|ENA last update:2016 10 19|External Id:SAMEA4518351|INSDC center alias:School of Natural Science Technology and Environmental Studies Sodertorn University|INSDC center name:School of Natural Science Technology and Environmental Studies Sodertorn University|INSDC first public:2017 10 02T17:05:16Z|INSDC last update:2016 10 19T13:53:59Z|INSDC status:public|Submitter Id:E MTAB 5173:IonXpressRNA 008 up 058 8|age:200|broker name:ArrayExpress|common name:zebrafish|organism part:brain|sample name:E MTAB 5173:IonXpressRNA 008 up 058 8|sex:male                 Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol E MTAB 5173:IonXpressRNA 008 up 058 8 s IonXpressRNA 008 up 058 8 s RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich Germany EE2 exposure. Fish exposed to 0 2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA Experimental Factor: male:sex|Experimental Factor: n1:compound RNA-Seq TRANSCRIPTOMIC RANDOM SINGLE ION_TORRENT Ion Torrent Proton   ERP018188 Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2018 11 16 IonXpressRNA_008_up_058_8.fastq.gz fastq 3259710114.0 38530802.0 E MTAB 5173:IonXpressRNA 008 up 058 8 0:84.60 A:916053004;C:755694888;G:751125332;T:836836890;N:0 84       916053004 755694888 751125332 836836890 0 ERX1767856 ERS1417530 ERA739176 School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive 1 0.70995   0.31365   0.74781   0.48846   61   B   usable mapping rate ion_torrent ion_torrent full_length random_priming ribozero bulk unknown unknown   Sweden 2016-10-19 Pharyngula Embryo Brain Nervous System
5800 5800 ERR1698347 ERX1767855 ERS1417529 ERP018188 PRJEB16335 RNA seq of the zebrafish danio rerio brain post developmental exposure to 17a ethinylestradiol E-MTAB-5173 Transcriptome Analysis 17a ethinylestradiol EE2 is a synthetic estrogen commonly used as an active substance in oral contraceptives. It is frequently found in waste water effluent and raise concern due to its persistent nature. EE2 binds to estrogen receptors with similar affinity to oestradiol and acts as one of the most potent hormone mimics found in the environment. Estrogen is involved in many aspects of the development of the neuroendocrine system influencing both brain structure and behavior. We and others have reported a significant effect on non reproductive behaviors in adult fish and in recent studies we found that developmental exposure to EE2 resulted in an anxiogenic phenotype as adults even post a long remediation period. In this study we aim to study possible mechanisms behind the behavior alterations of zebrafish developmentally exposed to EE2 by sequencing the whole brain transcriptome. Zebrafish embryos were exposed to 0 2.14 and 7.34 ng/L EE2 from 1 day to 80 dpf post the exposure period a remediation period of 120 days followed before the fish were sampled. 3 male brains from the control group 0 ng/L and the 2.14 ng/L group were sampled and 3 female brains from the control group 0 ng/L and 7.34 ng/L were sampled. ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2016 10 19|ArrayExpress:E MTAB 5173   Protocols: RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich Germany EE2 exposure. Fish exposed to 0 2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA IonXpressRNA 007 up 058 7 SAMEA4518350 School of Natural Science, Technology and Environmental Studies Sodertorn University ENA first public:2017 10 02|ENA last update:2016 10 19|External Id:SAMEA4518350|INSDC center alias:School of Natural Science Technology and Environmental Studies Sodertorn University|INSDC center name:School of Natural Science Technology and Environmental Studies Sodertorn University|INSDC first public:2017 10 02T17:05:16Z|INSDC last update:2016 10 19T13:53:59Z|INSDC status:public|Submitter Id:E MTAB 5173:IonXpressRNA 007 up 058 7|age:200|broker name:ArrayExpress|common name:zebrafish|organism part:brain|sample name:E MTAB 5173:IonXpressRNA 007 up 058 7|sex:male                 Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol E MTAB 5173:IonXpressRNA 007 up 058 7 s IonXpressRNA 007 up 058 7 s RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich Germany EE2 exposure. Fish exposed to 0 2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA Experimental Factor: male:sex|Experimental Factor: n1:compound RNA-Seq TRANSCRIPTOMIC RANDOM SINGLE ION_TORRENT Ion Torrent Proton   ERP018188 Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2018 11 16 IonXpressRNA_007_up_058_7.fastq.gz fastq 2307842164.0 28984666.0 E MTAB 5173:IonXpressRNA 007 up 058 7 0:79.62 A:634041732;C:548565089;G:545418985;T:579816358;N:0 79       634041732 548565089 545418985 579816358 0 ERX1767855 ERS1417529 ERA739176 School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive 1 0.67542   0.2817   0.74168   0.47224   37   B   usable mapping rate ion_torrent ion_torrent full_length random_priming ribozero bulk unknown unknown   Sweden 2016-10-19 Pharyngula Embryo Brain Nervous System
5801 5801 ERR1698346 ERX1767854 ERS1417528 ERP018188 PRJEB16335 RNA seq of the zebrafish danio rerio brain post developmental exposure to 17a ethinylestradiol E-MTAB-5173 Transcriptome Analysis 17a ethinylestradiol EE2 is a synthetic estrogen commonly used as an active substance in oral contraceptives. It is frequently found in waste water effluent and raise concern due to its persistent nature. EE2 binds to estrogen receptors with similar affinity to oestradiol and acts as one of the most potent hormone mimics found in the environment. Estrogen is involved in many aspects of the development of the neuroendocrine system influencing both brain structure and behavior. We and others have reported a significant effect on non reproductive behaviors in adult fish and in recent studies we found that developmental exposure to EE2 resulted in an anxiogenic phenotype as adults even post a long remediation period. In this study we aim to study possible mechanisms behind the behavior alterations of zebrafish developmentally exposed to EE2 by sequencing the whole brain transcriptome. Zebrafish embryos were exposed to 0 2.14 and 7.34 ng/L EE2 from 1 day to 80 dpf post the exposure period a remediation period of 120 days followed before the fish were sampled. 3 male brains from the control group 0 ng/L and the 2.14 ng/L group were sampled and 3 female brains from the control group 0 ng/L and 7.34 ng/L were sampled. ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2016 10 19|ArrayExpress:E MTAB 5173   Protocols: RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich Germany EE2 exposure. Fish exposed to 0 2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA IonXpressRNA 006 up 058 6 SAMEA4518349 School of Natural Science, Technology and Environmental Studies Sodertorn University ENA first public:2017 10 02|ENA last update:2016 10 19|External Id:SAMEA4518349|INSDC center alias:School of Natural Science Technology and Environmental Studies Sodertorn University|INSDC center name:School of Natural Science Technology and Environmental Studies Sodertorn University|INSDC first public:2017 10 02T17:05:16Z|INSDC last update:2016 10 19T13:53:59Z|INSDC status:public|Submitter Id:E MTAB 5173:IonXpressRNA 006 up 058 6|age:200|broker name:ArrayExpress|common name:zebrafish|organism part:brain|sample name:E MTAB 5173:IonXpressRNA 006 up 058 6|sex:female                 Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol E MTAB 5173:IonXpressRNA 006 up 058 6 s IonXpressRNA 006 up 058 6 s RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich Germany EE2 exposure. Fish exposed to 0 2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA Experimental Factor: female:sex|Experimental Factor: 17 ethinylestradiol:compound|Experimental Factor: 7.34:dose RNA-Seq TRANSCRIPTOMIC RANDOM SINGLE ION_TORRENT Ion Torrent Proton   ERP018188 Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2018 11 16 IonXpressRNA_006_up_058_6.fastq.gz fastq 2239484857.0 27021234.0 E MTAB 5173:IonXpressRNA 006 up 058 6 0:82.88 A:637326624;C:506830056;G:503508207;T:591819970;N:0 82       637326624 506830056 503508207 591819970 0 ERX1767854 ERS1417528 ERA739176 School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive 1 0.66441   0.31904   0.74905   0.47154   122   B   usable mapping rate ion_torrent ion_torrent full_length random_priming ribozero bulk unknown unknown   Sweden 2016-10-19 Pharyngula Embryo Brain Nervous System
5802 5802 ERR1698345 ERX1767853 ERS1417527 ERP018188 PRJEB16335 RNA seq of the zebrafish danio rerio brain post developmental exposure to 17a ethinylestradiol E-MTAB-5173 Transcriptome Analysis 17a ethinylestradiol EE2 is a synthetic estrogen commonly used as an active substance in oral contraceptives. It is frequently found in waste water effluent and raise concern due to its persistent nature. EE2 binds to estrogen receptors with similar affinity to oestradiol and acts as one of the most potent hormone mimics found in the environment. Estrogen is involved in many aspects of the development of the neuroendocrine system influencing both brain structure and behavior. We and others have reported a significant effect on non reproductive behaviors in adult fish and in recent studies we found that developmental exposure to EE2 resulted in an anxiogenic phenotype as adults even post a long remediation period. In this study we aim to study possible mechanisms behind the behavior alterations of zebrafish developmentally exposed to EE2 by sequencing the whole brain transcriptome. Zebrafish embryos were exposed to 0 2.14 and 7.34 ng/L EE2 from 1 day to 80 dpf post the exposure period a remediation period of 120 days followed before the fish were sampled. 3 male brains from the control group 0 ng/L and the 2.14 ng/L group were sampled and 3 female brains from the control group 0 ng/L and 7.34 ng/L were sampled. ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2016 10 19|ArrayExpress:E MTAB 5173   Protocols: RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich Germany EE2 exposure. Fish exposed to 0 2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA IonXpressRNA 005 up 058 5 SAMEA4518348 School of Natural Science, Technology and Environmental Studies Sodertorn University ENA first public:2017 10 02|ENA last update:2016 10 19|External Id:SAMEA4518348|INSDC center alias:School of Natural Science Technology and Environmental Studies Sodertorn University|INSDC center name:School of Natural Science Technology and Environmental Studies Sodertorn University|INSDC first public:2017 10 02T17:05:16Z|INSDC last update:2016 10 19T13:53:59Z|INSDC status:public|Submitter Id:E MTAB 5173:IonXpressRNA 005 up 058 5|age:200|broker name:ArrayExpress|common name:zebrafish|organism part:brain|sample name:E MTAB 5173:IonXpressRNA 005 up 058 5|sex:female                 Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol E MTAB 5173:IonXpressRNA 005 up 058 5 s IonXpressRNA 005 up 058 5 s RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich Germany EE2 exposure. Fish exposed to 0 2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA Experimental Factor: female:sex|Experimental Factor: 17 ethinylestradiol:compound|Experimental Factor: 7.34:dose RNA-Seq TRANSCRIPTOMIC RANDOM SINGLE ION_TORRENT Ion Torrent Proton   ERP018188 Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2018 11 16 IonXpressRNA_005_up_058_5.fastq.gz fastq 2920608487.0 39573075.0 E MTAB 5173:IonXpressRNA 005 up 058 5 0:73.80 A:814851327;C:678116994;G:691911192;T:735728974;N:0 73       814851327 678116994 691911192 735728974 0 ERX1767853 ERS1417527 ERA739176 School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive 1 0.60005   0.25542   0.76481   0.4886   12   B   usable mapping rate ion_torrent ion_torrent full_length random_priming ribozero bulk unknown unknown   Sweden 2016-10-19 Pharyngula Embryo Brain Nervous System
5803 5803 ERR1698344 ERX1767852 ERS1417526 ERP018188 PRJEB16335 RNA seq of the zebrafish danio rerio brain post developmental exposure to 17a ethinylestradiol E-MTAB-5173 Transcriptome Analysis 17a ethinylestradiol EE2 is a synthetic estrogen commonly used as an active substance in oral contraceptives. It is frequently found in waste water effluent and raise concern due to its persistent nature. EE2 binds to estrogen receptors with similar affinity to oestradiol and acts as one of the most potent hormone mimics found in the environment. Estrogen is involved in many aspects of the development of the neuroendocrine system influencing both brain structure and behavior. We and others have reported a significant effect on non reproductive behaviors in adult fish and in recent studies we found that developmental exposure to EE2 resulted in an anxiogenic phenotype as adults even post a long remediation period. In this study we aim to study possible mechanisms behind the behavior alterations of zebrafish developmentally exposed to EE2 by sequencing the whole brain transcriptome. Zebrafish embryos were exposed to 0 2.14 and 7.34 ng/L EE2 from 1 day to 80 dpf post the exposure period a remediation period of 120 days followed before the fish were sampled. 3 male brains from the control group 0 ng/L and the 2.14 ng/L group were sampled and 3 female brains from the control group 0 ng/L and 7.34 ng/L were sampled. ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2016 10 19|ArrayExpress:E MTAB 5173   Protocols: RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich Germany EE2 exposure. Fish exposed to 0 2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA IonXpressRNA 004 up 058 4 SAMEA4518347 School of Natural Science, Technology and Environmental Studies Sodertorn University ENA first public:2017 10 02|ENA last update:2016 10 19|External Id:SAMEA4518347|INSDC center alias:School of Natural Science Technology and Environmental Studies Sodertorn University|INSDC center name:School of Natural Science Technology and Environmental Studies Sodertorn University|INSDC first public:2017 10 02T17:05:16Z|INSDC last update:2016 10 19T13:53:59Z|INSDC status:public|Submitter Id:E MTAB 5173:IonXpressRNA 004 up 058 4|age:200|broker name:ArrayExpress|common name:zebrafish|organism part:brain|sample name:E MTAB 5173:IonXpressRNA 004 up 058 4|sex:female                 Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol E MTAB 5173:IonXpressRNA 004 up 058 4 s IonXpressRNA 004 up 058 4 s RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich Germany EE2 exposure. Fish exposed to 0 2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA Experimental Factor: female:sex|Experimental Factor: 17 ethinylestradiol:compound|Experimental Factor: 7.34:dose RNA-Seq TRANSCRIPTOMIC RANDOM SINGLE ION_TORRENT Ion Torrent Proton   ERP018188 Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2018 11 16 IonXpressRNA_004_up_058_4.fastq.gz fastq 2989727396.0 37953454.0 E MTAB 5173:IonXpressRNA 004 up 058 4 0:78.77 A:802963810;C:722434772;G:742850530;T:721478284;N:0 78       802963810 722434772 742850530 721478284 0 ERX1767852 ERS1417526 ERA739176 School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive 1 0.76402   0.32503   0.74241   0.4815   128   B   usable mapping rate ion_torrent ion_torrent full_length random_priming ribozero bulk unknown unknown   Sweden 2016-10-19 Pharyngula Embryo Brain Nervous System
5804 5804 ERR1698343 ERX1767851 ERS1417525 ERP018188 PRJEB16335 RNA seq of the zebrafish danio rerio brain post developmental exposure to 17a ethinylestradiol E-MTAB-5173 Transcriptome Analysis 17a ethinylestradiol EE2 is a synthetic estrogen commonly used as an active substance in oral contraceptives. It is frequently found in waste water effluent and raise concern due to its persistent nature. EE2 binds to estrogen receptors with similar affinity to oestradiol and acts as one of the most potent hormone mimics found in the environment. Estrogen is involved in many aspects of the development of the neuroendocrine system influencing both brain structure and behavior. We and others have reported a significant effect on non reproductive behaviors in adult fish and in recent studies we found that developmental exposure to EE2 resulted in an anxiogenic phenotype as adults even post a long remediation period. In this study we aim to study possible mechanisms behind the behavior alterations of zebrafish developmentally exposed to EE2 by sequencing the whole brain transcriptome. Zebrafish embryos were exposed to 0 2.14 and 7.34 ng/L EE2 from 1 day to 80 dpf post the exposure period a remediation period of 120 days followed before the fish were sampled. 3 male brains from the control group 0 ng/L and the 2.14 ng/L group were sampled and 3 female brains from the control group 0 ng/L and 7.34 ng/L were sampled. ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2016 10 19|ArrayExpress:E MTAB 5173   Protocols: RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich Germany EE2 exposure. Fish exposed to 0 2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA IonXpressRNA 003 up 058 3 SAMEA4518346 School of Natural Science, Technology and Environmental Studies Sodertorn University ENA first public:2017 10 02|ENA last update:2016 10 19|External Id:SAMEA4518346|INSDC center alias:School of Natural Science Technology and Environmental Studies Sodertorn University|INSDC center name:School of Natural Science Technology and Environmental Studies Sodertorn University|INSDC first public:2017 10 02T17:05:16Z|INSDC last update:2016 10 19T13:53:59Z|INSDC status:public|Submitter Id:E MTAB 5173:IonXpressRNA 003 up 058 3|age:200|broker name:ArrayExpress|common name:zebrafish|organism part:brain|sample name:E MTAB 5173:IonXpressRNA 003 up 058 3|sex:female                 Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol E MTAB 5173:IonXpressRNA 003 up 058 3 s IonXpressRNA 003 up 058 3 s RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich Germany EE2 exposure. Fish exposed to 0 2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA Experimental Factor: female:sex|Experimental Factor: n1:compound RNA-Seq TRANSCRIPTOMIC RANDOM SINGLE ION_TORRENT Ion Torrent Proton   ERP018188 Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2018 11 16 IonXpressRNA_003_up_058_3.fastq.gz fastq 4068383115.0 41996847.0 E MTAB 5173:IonXpressRNA 003 up 058 3 0:96.87 A:1133167706;C:944306379;G:948626944;T:1042282086;N:0 96       1133167706 944306379 948626944 1042282086 0 ERX1767851 ERS1417525 ERA739176 School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive 1 0.54804   0.22334   0.76353   0.49163   93   B   usable mapping rate ion_torrent ion_torrent full_length random_priming ribozero bulk unknown unknown   Sweden 2016-10-19 Pharyngula Embryo Brain Nervous System
5805 5805 ERR1698342 ERX1767850 ERS1417524 ERP018188 PRJEB16335 RNA seq of the zebrafish danio rerio brain post developmental exposure to 17a ethinylestradiol E-MTAB-5173 Transcriptome Analysis 17a ethinylestradiol EE2 is a synthetic estrogen commonly used as an active substance in oral contraceptives. It is frequently found in waste water effluent and raise concern due to its persistent nature. EE2 binds to estrogen receptors with similar affinity to oestradiol and acts as one of the most potent hormone mimics found in the environment. Estrogen is involved in many aspects of the development of the neuroendocrine system influencing both brain structure and behavior. We and others have reported a significant effect on non reproductive behaviors in adult fish and in recent studies we found that developmental exposure to EE2 resulted in an anxiogenic phenotype as adults even post a long remediation period. In this study we aim to study possible mechanisms behind the behavior alterations of zebrafish developmentally exposed to EE2 by sequencing the whole brain transcriptome. Zebrafish embryos were exposed to 0 2.14 and 7.34 ng/L EE2 from 1 day to 80 dpf post the exposure period a remediation period of 120 days followed before the fish were sampled. 3 male brains from the control group 0 ng/L and the 2.14 ng/L group were sampled and 3 female brains from the control group 0 ng/L and 7.34 ng/L were sampled. ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2016 10 19|ArrayExpress:E MTAB 5173   Protocols: RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich Germany EE2 exposure. Fish exposed to 0 2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA IonXpressRNA 002 up 058 2 SAMEA4518345 School of Natural Science, Technology and Environmental Studies Sodertorn University ENA first public:2017 10 02|ENA last update:2016 10 19|External Id:SAMEA4518345|INSDC center alias:School of Natural Science Technology and Environmental Studies Sodertorn University|INSDC center name:School of Natural Science Technology and Environmental Studies Sodertorn University|INSDC first public:2017 10 02T17:05:16Z|INSDC last update:2016 10 19T13:53:59Z|INSDC status:public|Submitter Id:E MTAB 5173:IonXpressRNA 002 up 058 2|age:200|broker name:ArrayExpress|common name:zebrafish|organism part:brain|sample name:E MTAB 5173:IonXpressRNA 002 up 058 2|sex:female                 Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol E MTAB 5173:IonXpressRNA 002 up 058 2 s IonXpressRNA 002 up 058 2 s RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich Germany EE2 exposure. Fish exposed to 0 2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA Experimental Factor: female:sex|Experimental Factor: n1:compound RNA-Seq TRANSCRIPTOMIC RANDOM SINGLE ION_TORRENT Ion Torrent Proton   ERP018188 Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2018 11 16 IonXpressRNA_002_up_058_2.fastq.gz fastq 2679963893.0 33552723.0 E MTAB 5173:IonXpressRNA 002 up 058 2 0:79.87 A:709092431;C:635329399;G:670478210;T:665063853;N:0 79       709092431 635329399 670478210 665063853 0 ERX1767850 ERS1417524 ERA739176 School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive 1 0.43283   0.18649   0.81178   0.52885   116   B   usable mapping rate ion_torrent ion_torrent full_length random_priming ribozero bulk unknown unknown   Sweden 2016-10-19 Pharyngula Embryo Brain Nervous System
5806 5806 ERR1698341 ERX1767849 ERS1417523 ERP018188 PRJEB16335 RNA seq of the zebrafish danio rerio brain post developmental exposure to 17a ethinylestradiol E-MTAB-5173 Transcriptome Analysis 17a ethinylestradiol EE2 is a synthetic estrogen commonly used as an active substance in oral contraceptives. It is frequently found in waste water effluent and raise concern due to its persistent nature. EE2 binds to estrogen receptors with similar affinity to oestradiol and acts as one of the most potent hormone mimics found in the environment. Estrogen is involved in many aspects of the development of the neuroendocrine system influencing both brain structure and behavior. We and others have reported a significant effect on non reproductive behaviors in adult fish and in recent studies we found that developmental exposure to EE2 resulted in an anxiogenic phenotype as adults even post a long remediation period. In this study we aim to study possible mechanisms behind the behavior alterations of zebrafish developmentally exposed to EE2 by sequencing the whole brain transcriptome. Zebrafish embryos were exposed to 0 2.14 and 7.34 ng/L EE2 from 1 day to 80 dpf post the exposure period a remediation period of 120 days followed before the fish were sampled. 3 male brains from the control group 0 ng/L and the 2.14 ng/L group were sampled and 3 female brains from the control group 0 ng/L and 7.34 ng/L were sampled. ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2016 10 19|ArrayExpress:E MTAB 5173   Protocols: RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich Germany EE2 exposure. Fish exposed to 0 2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA IonXpressRNA 001 up 058 1 SAMEA4518344 School of Natural Science, Technology and Environmental Studies Sodertorn University ENA first public:2017 10 02|ENA last update:2016 10 19|External Id:SAMEA4518344|INSDC center alias:School of Natural Science Technology and Environmental Studies Sodertorn University|INSDC center name:School of Natural Science Technology and Environmental Studies Sodertorn University|INSDC first public:2017 10 02T17:05:16Z|INSDC last update:2016 10 19T13:53:59Z|INSDC status:public|Submitter Id:E MTAB 5173:IonXpressRNA 001 up 058 1|age:200|broker name:ArrayExpress|common name:zebrafish|organism part:brain|sample name:E MTAB 5173:IonXpressRNA 001 up 058 1|sex:female                 Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol E MTAB 5173:IonXpressRNA 001 up 058 1 s IonXpressRNA 001 up 058 1 s RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich Germany EE2 exposure. Fish exposed to 0 2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA Experimental Factor: female:sex|Experimental Factor: n1:compound RNA-Seq TRANSCRIPTOMIC RANDOM SINGLE ION_TORRENT Ion Torrent Proton   ERP018188 Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2018 11 16 IonXpressRNA_001_up_058_1.fastq.gz fastq 3358902499.0 39857024.0 E MTAB 5173:IonXpressRNA 001 up 058 1 0:84.27 A:933405205;C:784111716;G:780404241;T:860981337;N:0 84       933405205 784111716 780404241 860981337 0 ERX1767849 ERS1417523 ERA739176 School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive 1 0.71789   0.33159   0.76619   0.514   56   B   usable mapping rate ion_torrent ion_torrent full_length random_priming ribozero bulk unknown unknown   Sweden 2016-10-19 Pharyngula Embryo Brain Nervous System
33439 33439 SRR30280831 SRX25741613 SRS22381131 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPAGE 10 BP10# DMSO 3   strain:TU|isolate:90|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPAGE 10 BP10# DMSO 3 BP10# DMSO 3 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP10#-DMSO-3.fastq.gz fastq 92459659.0 929177.0 BP10# DMSO 3.fastq.gz 0:99.51 A:21511804;C:24897124;G:24440562;T:21610169;N:0 99       21511804 24897124 24440562 21610169 0 SRX25741613 SRS22381131 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33440 33440 SRR30280704 SRX25741612 SRS22381130 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPAGE 9 BP10# DMSO 2   strain:TU|isolate:89|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPAGE 9 BP10# DMSO 2 BP10# DMSO 2 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP10#-DMSO-2.fastq.gz fastq 184067375.0 1813659.0 BP10# DMSO 2.fastq.gz 0:101.49 A:43014934;C:49110340;G:48560159;T:43381942;N:0 101       43014934 49110340 48560159 43381942 0 SRX25741612 SRS22381130 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33441 33441 SRR30280705 SRX25741611 SRS22381129 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPAGE 8 BP10# DMSO 1   strain:TU|isolate:88|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPAGE 8 BP10# DMSO 1 BP10# DMSO 1 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP10#-DMSO-1.fastq.gz fastq 148237805.0 1464542.0 BP10# DMSO 1.fastq.gz 0:101.22 A:34729919;C:39397602;G:39251519;T:34858765;N:0 101       34729919 39397602 39251519 34858765 0 SRX25741611 SRS22381129 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33442 33442 SRR30280706 SRX25741610 SRS22381128 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPAGE 7 BP10# 7   strain:TU|isolate:87|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPAGE 7 BP10# 7 BP10# 7 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP10#-7.fastq.gz fastq 164490060.0 1636480.0 BP10# 7.fastq.gz 0:100.51 A:38838318;C:43438465;G:43456970;T:38756307;N:0 100       38838318 43438465 43456970 38756307 0 SRX25741610 SRS22381128 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33443 33443 SRR30280707 SRX25741609 SRS22381127 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPAGE 6 BP10# 6   strain:TU|isolate:86|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPAGE 6 BP10# 6 BP10# 6 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP10#-6.fastq.gz fastq 155194512.0 1505703.0 BP10# 6.fastq.gz 0:103.07 A:36677853;C:40887150;G:40906247;T:36723262;N:0 103       36677853 40887150 40906247 36723262 0 SRX25741609 SRS22381127 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33444 33444 SRR30280708 SRX25741608 SRS22381126 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPAGE 5 BP10# 5   strain:TU|isolate:85|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPAGE 5 BP10# 5 BP10# 5 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP10#-5.fastq.gz fastq 163104451.0 1593080.0 BP10# 5.fastq.gz 0:102.38 A:38629973;C:43080977;G:42996215;T:38397286;N:0 102       38629973 43080977 42996215 38397286 0 SRX25741608 SRS22381126 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33445 33445 SRR30280709 SRX25741607 SRS22381125 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPAGE 4 BP10# 4   strain:TU|isolate:84|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPAGE 4 BP10# 4 BP10# 4 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP10#-4.fastq.gz fastq 141101402.0 1409537.0 BP10# 4.fastq.gz 0:100.10 A:33334876;C:37175155;G:37298446;T:33292925;N:0 100       33334876 37175155 37298446 33292925 0 SRX25741607 SRS22381125 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33446 33446 SRR30280710 SRX25741606 SRS22381124 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPAGE 3 BP10# 3   strain:TU|isolate:83|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPAGE 3 BP10# 3 BP10# 3 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP10#-3.fastq.gz fastq 156294355.0 1507427.0 BP10# 3.fastq.gz 0:103.68 A:36910418;C:41342273;G:41169658;T:36872006;N:0 103       36910418 41342273 41169658 36872006 0 SRX25741606 SRS22381124 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33447 33447 SRR30280711 SRX25741605 SRS22381123 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPAGE 2 BP10# 2   strain:TU|isolate:82|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPAGE 2 BP10# 2 BP10# 2 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP10#-2.fastq.gz fastq 111628166.0 1080707.0 BP10# 2.fastq.gz 0:103.29 A:26410755;C:29627534;G:29253738;T:26336139;N:0 103       26410755 29627534 29253738 26336139 0 SRX25741605 SRS22381123 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33448 33448 SRR30280712 SRX25741604 SRS22381122 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPAGE 1 BP10# 1   strain:TU|isolate:81|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPAGE 1 BP10# 1 BP10# 1 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP10#-1.fastq.gz fastq 143973283.0 1411136.0 BP10# 1.fastq.gz 0:102.03 A:34301322;C:37717275;G:37805886;T:34148800;N:0 102       34301322 37717275 37805886 34148800 0 SRX25741604 SRS22381122 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33449 33449 SRR30280713 SRX25741603 SRS22381120 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPS 9 BP2# DMSO 2   strain:TU|isolate:9|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPS 9 BP2# DMSO 2 BP2# DMSO 2 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP2#-DMSO-2.fastq.gz fastq 121679118.0 1146532.0 BP2# DMSO 2.fastq.gz 0:106.13 A:28957172;C:31903260;G:31955173;T:28863513;N:0 106       28957172 31903260 31955173 28863513 0 SRX25741603 SRS22381120 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33450 33450 SRR30280714 SRX25741602 SRS22381121 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPTMC 10 BP8# DMSO 3   strain:TU|isolate:80|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPTMC 10 BP8# DMSO 3 BP8# DMSO 3 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP8#-DMSO-3.fastq.gz fastq 116509377.0 1201618.0 BP8# DMSO 3.fastq.gz 0:96.96 A:27076619;C:31149115;G:31146213;T:27137430;N:0 96       27076619 31149115 31146213 27137430 0 SRX25741602 SRS22381121 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33451 33451 SRR30280715 SRX25741601 SRS22381119 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPTMC 9 BP8# DMSO 2   strain:TU|isolate:79|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPTMC 9 BP8# DMSO 2 BP8# DMSO 2 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP8#-DMSO-2.fastq.gz fastq 126980560.0 1245267.0 BP8# DMSO 2.fastq.gz 0:101.97 A:30148136;C:33803559;G:33492078;T:29536787;N:0 101       30148136 33803559 33492078 29536787 0 SRX25741601 SRS22381119 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33452 33452 SRR30280716 SRX25741600 SRS22381118 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPTMC 8 BP8# DMSO 1   strain:TU|isolate:78|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPTMC 8 BP8# DMSO 1 BP8# DMSO 1 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP8#-DMSO-1.fastq.gz fastq 123397953.0 1167071.0 BP8# DMSO 1.fastq.gz 0:105.73 A:28979230;C:32683758;G:32531951;T:29203014;N:0 105       28979230 32683758 32531951 29203014 0 SRX25741600 SRS22381118 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33453 33453 SRR30280717 SRX25741599 SRS22381117 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPTMC 7 BP8# 7   strain:TU|isolate:77|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPTMC 7 BP8# 7 BP8# 7 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP8#-7.fastq.gz fastq 117872895.0 1119299.0 BP8# 7.fastq.gz 0:105.31 A:27851183;C:31344900;G:30718485;T:27958327;N:0 105       27851183 31344900 30718485 27958327 0 SRX25741599 SRS22381117 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33454 33454 SRR30280718 SRX25741598 SRS22381116 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPTMC 6 BP8# 6   strain:TU|isolate:76|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPTMC 6 BP8# 6 BP8# 6 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP8#-6.fastq.gz fastq 111957625.0 1071866.0 BP8# 6.fastq.gz 0:104.45 A:26648862;C:29449571;G:29516510;T:26342682;N:0 104       26648862 29449571 29516510 26342682 0 SRX25741598 SRS22381116 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33455 33455 SRR30280719 SRX25741597 SRS22381115 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPTMC 5 BP8# 5   strain:TU|isolate:75|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPTMC 5 BP8# 5 BP8# 5 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP8#-5.fastq.gz fastq 126372290.0 1210093.0 BP8# 5.fastq.gz 0:104.43 A:30062430;C:33314558;G:33069100;T:29926202;N:0 104       30062430 33314558 33069100 29926202 0 SRX25741597 SRS22381115 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33456 33456 SRR30280720 SRX25741596 SRS22381114 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPTMC 4 BP8# 4   strain:TU|isolate:74|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPTMC 4 BP8# 4 BP8# 4 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP8#-4.fastq.gz fastq 128721856.0 1239512.0 BP8# 4.fastq.gz 0:103.85 A:30267273;C:34185892;G:33688377;T:30580314;N:0 103       30267273 34185892 33688377 30580314 0 SRX25741596 SRS22381114 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33457 33457 SRR30280721 SRX25741595 SRS22381113 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPTMC 3 BP8# 3   strain:TU|isolate:73|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPTMC 3 BP8# 3 BP8# 3 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP8#-3.fastq.gz fastq 128200329.0 1234995.0 BP8# 3.fastq.gz 0:103.81 A:30417908;C:33785230;G:33670842;T:30326349;N:0 103       30417908 33785230 33670842 30326349 0 SRX25741595 SRS22381113 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33458 33458 SRR30280722 SRX25741594 SRS22381112 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPTMC 2 BP8# 2   strain:TU|isolate:72|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPTMC 2 BP8# 2 BP8# 2 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP8#-2.fastq.gz fastq 99353699.0 947145.0 BP8# 2.fastq.gz 0:104.90 A:23560131;C:26008128;G:26310676;T:23474764;N:0 104       23560131 26008128 26310676 23474764 0 SRX25741594 SRS22381112 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33459 33459 SRR30280723 SRX25741593 SRS22381111 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPTMC 1 BP8# 1   strain:TU|isolate:71|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPTMC 1 BP8# 1 BP8# 1 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP8#-1.fastq.gz fastq 101253709.0 974909.0 BP8# 1.fastq.gz 0:103.86 A:24014647;C:26648401;G:26749516;T:23841145;N:0 103       24014647 26648401 26749516 23841145 0 SRX25741593 SRS22381111 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33460 33460 SRR30280724 SRX25741592 SRS22381110 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPS 8 BP2# DMSO 1   strain:TU|isolate:8|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPS 8 BP2# DMSO 1 BP2# DMSO 1 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP2#-DMSO-1.fastq.gz fastq 54970926.0 518074.0 BP2# DMSO 1.fastq.gz 0:106.11 A:13057581;C:14507897;G:14456016;T:12949432;N:0 106       13057581 14507897 14456016 12949432 0 SRX25741592 SRS22381110 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33461 33461 SRR30280725 SRX25741591 SRS22381109 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPP 10 BP7# DMSO 3   strain:TU|isolate:70|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPP 10 BP7# DMSO 3 BP7# DMSO 3 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP7#-DMSO-3.fastq.gz fastq 123214657.0 1237962.0 BP7# DMSO 3.fastq.gz 0:99.53 A:28785213;C:32846077;G:32681550;T:28901817;N:0 99       28785213 32846077 32681550 28901817 0 SRX25741591 SRS22381109 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33462 33462 SRR30280726 SRX25741590 SRS22381108 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPP 9 BP7# DMSO 2   strain:TU|isolate:69|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPP 9 BP7# DMSO 2 BP7# DMSO 2 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP7#-DMSO-2.fastq.gz fastq 41215713.0 423271.0 BP7# DMSO 2.fastq.gz 0:97.37 A:9589570;C:11133557;G:10895490;T:9597096;N:0 97       9589570 11133557 10895490 9597096 0 SRX25741590 SRS22381108 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33463 33463 SRR30280727 SRX25741589 SRS22381107 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPP 8 BP7# DMSO 1   strain:TU|isolate:68|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPP 8 BP7# DMSO 1 BP7# DMSO 1 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP7#-DMSO-1.fastq.gz fastq 250009982.0 2396988.0 BP7# DMSO 1.fastq.gz 0:104.30 A:59211578;C:66112203;G:65641188;T:59045013;N:0 104       59211578 66112203 65641188 59045013 0 SRX25741589 SRS22381107 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33464 33464 SRR30280728 SRX25741588 SRS22381106 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPP 7 BP7# 7   strain:TU|isolate:67|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPP 7 BP7# 7 BP7# 7 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP7#-7.fastq.gz fastq 44725970.0 423428.0 BP7# 7.fastq.gz 0:105.63 A:10573402;C:11833576;G:11724776;T:10594216;N:0 105       10573402 11833576 11724776 10594216 0 SRX25741588 SRS22381106 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33465 33465 SRR30280729 SRX25741587 SRS22381105 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPP 6 BP7# 6   strain:TU|isolate:66|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPP 6 BP7# 6 BP7# 6 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP7#-6.fastq.gz fastq 145545693.0 1385533.0 BP7# 6.fastq.gz 0:105.05 A:34431733;C:38602041;G:38257359;T:34254560;N:0 105       34431733 38602041 38257359 34254560 0 SRX25741587 SRS22381105 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33466 33466 SRR30280730 SRX25741586 SRS22381104 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPP 5 BP7# 5   strain:TU|isolate:65|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPP 5 BP7# 5 BP7# 5 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP7#-5.fastq.gz fastq 178532872.0 1748047.0 BP7# 5.fastq.gz 0:102.13 A:42591575;C:46798657;G:46820438;T:42322202;N:0 102       42591575 46798657 46820438 42322202 0 SRX25741586 SRS22381104 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33467 33467 SRR30280731 SRX25741585 SRS22381103 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPP 4 BP7# 4   strain:TU|isolate:64|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPP 4 BP7# 4 BP7# 4 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP7#-4.fastq.gz fastq 59046400.0 556476.0 BP7# 4.fastq.gz 0:106.11 A:14036205;C:15600456;G:15470219;T:13939520;N:0 106       14036205 15600456 15470219 13939520 0 SRX25741585 SRS22381103 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33468 33468 SRR30280732 SRX25741584 SRS22381102 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPP 3 BP7# 3   strain:TU|isolate:63|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPP 3 BP7# 3 BP7# 3 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP7#-3.fastq.gz fastq 167725955.0 1635470.0 BP7# 3.fastq.gz 0:102.56 A:39786240;C:44180010;G:44154342;T:39605363;N:0 102       39786240 44180010 44154342 39605363 0 SRX25741584 SRS22381102 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33469 33469 SRR30280733 SRX25741583 SRS22381101 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPP 2 BP7# 2   strain:TU|isolate:62|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPP 2 BP7# 2 BP7# 2 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP7#-2.fastq.gz fastq 160305207.0 1553984.0 BP7# 2.fastq.gz 0:103.16 A:38057812;C:42240658;G:42101188;T:37905549;N:0 103       38057812 42240658 42101188 37905549 0 SRX25741583 SRS22381101 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33470 33470 SRR30280734 SRX25741582 SRS22381100 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPP 1 BP7# 1   strain:TU|isolate:61|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPP 1 BP7# 1 BP7# 1 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP7#-1.fastq.gz fastq 170723714.0 1640146.0 BP7# 1.fastq.gz 0:104.09 A:40492006;C:45082123;G:44790747;T:40358838;N:0 104       40492006 45082123 44790747 40358838 0 SRX25741582 SRS22381100 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33471 33471 SRR30280735 SRX25741581 SRS22381099 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPS 7 BP2# 7   strain:TU|isolate:7|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPS 7 BP2# 7 BP2# 7 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP2#-7.fastq.gz fastq 38882822.0 376278.0 BP2# 7.fastq.gz 0:103.34 A:9199994;C:10348494;G:10211553;T:9122781;N:0 103       9199994 10348494 10211553 9122781 0 SRX25741581 SRS22381099 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33472 33472 SRR30280736 SRX25741580 SRS22381098 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPPH 10 BP6# DMSO 3   strain:TU|isolate:60|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPPH 10 BP6# DMSO 3 BP6# DMSO 3 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP6#-DMSO-3.fastq.gz fastq 168637726.0 1697190.0 BP6# DMSO 3.fastq.gz 0:99.36 A:39372962;C:45045318;G:44821656;T:39397790;N:0 99       39372962 45045318 44821656 39397790 0 SRX25741580 SRS22381098 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33473 33473 SRR30280737 SRX25741579 SRS22381097 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPPH 9 BP6# DMSO 2   strain:TU|isolate:59|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPPH 9 BP6# DMSO 2 BP6# DMSO 2 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP6#-DMSO-2.fastq.gz fastq 84169374.0 885774.0 BP6# DMSO 2.fastq.gz 0:95.02 A:19595849;C:22311196;G:22786761;T:19475568;N:0 95       19595849 22311196 22786761 19475568 0 SRX25741579 SRS22381097 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33474 33474 SRR30280738 SRX25741578 SRS22381096 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPPH 8 BP6# DMSO 1   strain:TU|isolate:58|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPPH 8 BP6# DMSO 1 BP6# DMSO 1 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP6#-DMSO-1.fastq.gz fastq 62914420.0 598585.0 BP6# DMSO 1.fastq.gz 0:105.11 A:14828390;C:16725889;G:16466687;T:14893454;N:0 105       14828390 16725889 16466687 14893454 0 SRX25741578 SRS22381096 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33475 33475 SRR30280739 SRX25741577 SRS22381095 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPPH 7 BP6# 7   strain:TU|isolate:57|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPPH 7 BP6# 7 BP6# 7 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP6#-7.fastq.gz fastq 57364216.0 554366.0 BP6# 7.fastq.gz 0:103.48 A:13557873;C:15204286;G:15249012;T:13353045;N:0 103       13557873 15204286 15249012 13353045 0 SRX25741577 SRS22381095 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33476 33476 SRR30280740 SRX25741576 SRS22381094 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPPH 6 BP6# 6   strain:TU|isolate:56|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPPH 6 BP6# 6 BP6# 6 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP6#-6.fastq.gz fastq 71062843.0 690536.0 BP6# 6.fastq.gz 0:102.91 A:16797854;C:18816496;G:18773789;T:16674704;N:0 102       16797854 18816496 18773789 16674704 0 SRX25741576 SRS22381094 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33477 33477 SRR30280741 SRX25741575 SRS22381093 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPPH 5 BP6# 5   strain:TU|isolate:55|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPPH 5 BP6# 5 BP6# 5 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP6#-5.fastq.gz fastq 388324559.0 3662531.0 BP6# 5.fastq.gz 0:106.03 A:91880623;C:102595870;G:102276868;T:91571198;N:0 106       91880623 102595870 102276868 91571198 0 SRX25741575 SRS22381093 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33478 33478 SRR30280742 SRX25741574 SRS22381092 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPPH 4 BP6# 4   strain:TU|isolate:54|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPPH 4 BP6# 4 BP6# 4 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP6#-4.fastq.gz fastq 53969235.0 528607.0 BP6# 4.fastq.gz 0:102.10 A:12709612;C:14307567;G:14331038;T:12621018;N:0 102       12709612 14307567 14331038 12621018 0 SRX25741574 SRS22381092 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33479 33479 SRR30280743 SRX25741573 SRS22381091 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPPH 3 BP6# 3   strain:TU|isolate:53|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPPH 3 BP6# 3 BP6# 3 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP6#-3.fastq.gz fastq 459563075.0 4338540.0 BP6# 3.fastq.gz 0:105.93 A:109287374;C:121502158;G:121023009;T:107750534;N:0 105       109287374 121502158 121023009 107750534 0 SRX25741573 SRS22381091 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33480 33480 SRR30280744 SRX25741572 SRS22381090 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPPH 2 BP6# 2   strain:TU|isolate:52|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPPH 2 BP6# 2 BP6# 2 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP6#-2.fastq.gz fastq 71041410.0 672229.0 BP6# 2.fastq.gz 0:105.68 A:16754424;C:18821001;G:18671023;T:16794962;N:0 105       16754424 18821001 18671023 16794962 0 SRX25741572 SRS22381090 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33481 33481 SRR30280745 SRX25741571 SRS22381089 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPPH 1 BP6# 1   strain:TU|isolate:51|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPPH 1 BP6# 1 BP6# 1 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP6#-1.fastq.gz fastq 80894902.0 777427.0 BP6# 1.fastq.gz 0:104.05 A:19045795;C:21492943;G:21345360;T:19010804;N:0 104       19045795 21492943 21345360 19010804 0 SRX25741571 SRS22381089 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33482 33482 SRR30280746 SRX25741570 SRS22381088 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPS 6 BP2# 6   strain:TU|isolate:6|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPS 6 BP2# 6 BP2# 6 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP2#-6.fastq.gz fastq 41107063.0 387968.0 BP2# 6.fastq.gz 0:105.95 A:9745763;C:10874420;G:10753007;T:9733873;N:0 105       9745763 10874420 10753007 9733873 0 SRX25741570 SRS22381088 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33483 33483 SRR30280747 SRX25741569 SRS22381087 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPM 10 BP5# DMSO 3   strain:TU|isolate:50|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPM 10 BP5# DMSO 3 BP5# DMSO 3 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP5#-DMSO-3.fastq.gz fastq 69830864.0 722424.0 BP5# DMSO 3.fastq.gz 0:96.66 A:16195315;C:18820158;G:18512005;T:16303386;N:0 96       16195315 18820158 18512005 16303386 0 SRX25741569 SRS22381087 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33484 33484 SRR30280748 SRX25741568 SRS22381086 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPM 9 BP5# DMSO 2   strain:TU|isolate:49|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPM 9 BP5# DMSO 2 BP5# DMSO 2 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP5#-DMSO-2.fastq.gz fastq 164930364.0 1712837.0 BP5# DMSO 2.fastq.gz 0:96.29 A:38256270;C:44329270;G:44181612;T:38163212;N:0 96       38256270 44329270 44181612 38163212 0 SRX25741568 SRS22381086 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33485 33485 SRR30280749 SRX25741567 SRS22381085 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPM 8 BP5# DMSO 1   strain:TU|isolate:48|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPM 8 BP5# DMSO 1 BP5# DMSO 1 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP5#-DMSO-1.fastq.gz fastq 181332852.0 1769396.0 BP5# DMSO 1.fastq.gz 0:102.48 A:43111149;C:47723124;G:47703716;T:42794863;N:0 102       43111149 47723124 47703716 42794863 0 SRX25741567 SRS22381085 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33486 33486 SRR30280750 SRX25741566 SRS22381084 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPM 7 BP5# 7   strain:TU|isolate:47|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPM 7 BP5# 7 BP5# 7 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP5#-7.fastq.gz fastq 156354483.0 1499782.0 BP5# 7.fastq.gz 0:104.25 A:37138190;C:41308272;G:40976578;T:36931443;N:0 104       37138190 41308272 40976578 36931443 0 SRX25741566 SRS22381084 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33487 33487 SRR30280751 SRX25741565 SRS22381083 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPM 6 BP5# 6   strain:TU|isolate:46|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPM 6 BP5# 6 BP5# 6 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP5#-6.fastq.gz fastq 173968738.0 1651137.0 BP5# 6.fastq.gz 0:105.36 A:41303240;C:45813867;G:45637169;T:41214462;N:0 105       41303240 45813867 45637169 41214462 0 SRX25741565 SRS22381083 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33488 33488 SRR30280752 SRX25741564 SRS22381082 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPM 5 BP5# 5   strain:TU|isolate:45|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPM 5 BP5# 5 BP5# 5 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP5#-5.fastq.gz fastq 159018875.0 1527111.0 BP5# 5.fastq.gz 0:104.13 A:37684248;C:41887152;G:41787315;T:37660160;N:0 104       37684248 41887152 41787315 37660160 0 SRX25741564 SRS22381082 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33489 33489 SRR30280753 SRX25741563 SRS22381081 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPM 4 BP5# 4   strain:TU|isolate:44|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPM 4 BP5# 4 BP5# 4 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP5#-4.fastq.gz fastq 172581316.0 1672193.0 BP5# 4.fastq.gz 0:103.21 A:40735879;C:45609457;G:45531283;T:40704697;N:0 103       40735879 45609457 45531283 40704697 0 SRX25741563 SRS22381081 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33490 33490 SRR30280754 SRX25741562 SRS22381080 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPM 3 BP5# 3   strain:TU|isolate:43|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPM 3 BP5# 3 BP5# 3 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP5#-3.fastq.gz fastq 194293989.0 1881466.0 BP5# 3.fastq.gz 0:103.27 A:45699763;C:51658251;G:51051270;T:45884705;N:0 103       45699763 51658251 51051270 45884705 0 SRX25741562 SRS22381080 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33491 33491 SRR30280755 SRX25741561 SRS22381079 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPM 2 BP5# 2   strain:TU|isolate:42|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPM 2 BP5# 2 BP5# 2 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP5#-2.fastq.gz fastq 169428376.0 1621727.0 BP5# 2.fastq.gz 0:104.47 A:40092975;C:44761119;G:44430155;T:40144127;N:0 104       40092975 44761119 44430155 40144127 0 SRX25741561 SRS22381079 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33492 33492 SRR30280756 SRX25741560 SRS22381078 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPM 1 BP5# 1   strain:TU|isolate:41|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPM 1 BP5# 1 BP5# 1 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP5#-1.fastq.gz fastq 144606960.0 1448818.0 BP5# 1.fastq.gz 0:99.81 A:34224454;C:38193289;G:38174848;T:34014369;N:0 99       34224454 38193289 38174848 34014369 0 SRX25741560 SRS22381078 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33493 33493 SRR30280757 SRX25741559 SRS22381077 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPS 5 BP2# 5   strain:TU|isolate:5|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPS 5 BP2# 5 BP2# 5 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP2#-5.fastq.gz fastq 54004345.0 528826.0 BP2# 5.fastq.gz 0:102.12 A:12647240;C:14354167;G:14231898;T:12771040;N:0 102       12647240 14354167 14231898 12771040 0 SRX25741559 SRS22381077 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33494 33494 SRR30280758 SRX25741558 SRS22381076 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPG 10 BP4# DMSO 3   strain:TU|isolate:40|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPG 10 BP4# DMSO 3 BP4# DMSO 3 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP4#-DMSO-3.fastq.gz fastq 36465434.0 372286.0 BP4# DMSO 3.fastq.gz 0:97.95 A:8490297;C:9790740;G:9683118;T:8501279;N:0 97       8490297 9790740 9683118 8501279 0 SRX25741558 SRS22381076 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33495 33495 SRR30280759 SRX25741557 SRS22381075 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPG 9 BP4# DMSO 2   strain:TU|isolate:39|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPG 9 BP4# DMSO 2 BP4# DMSO 2 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP4#-DMSO-2.fastq.gz fastq 93830164.0 961498.0 BP4# DMSO 2.fastq.gz 0:97.59 A:21868926;C:25159102;G:25064131;T:21738005;N:0 97       21868926 25159102 25064131 21738005 0 SRX25741557 SRS22381075 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33496 33496 SRR30280760 SRX25741556 SRS22381074 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPG 8 BP4# DMSO 1   strain:TU|isolate:38|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPG 8 BP4# DMSO 1 BP4# DMSO 1 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP4#-DMSO-1.fastq.gz fastq 207441996.0 2016339.0 BP4# DMSO 1.fastq.gz 0:102.88 A:48915341;C:54837085;G:54776415;T:48913155;N:0 102       48915341 54837085 54776415 48913155 0 SRX25741556 SRS22381074 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33497 33497 SRR30280761 SRX25741555 SRS22381073 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPG 7 BP4# 7   strain:TU|isolate:37|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPG 7 BP4# 7 BP4# 7 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP4#-7.fastq.gz fastq 255678685.0 2484772.0 BP4# 7.fastq.gz 0:102.90 A:60397868;C:67633446;G:67278186;T:60369185;N:0 102       60397868 67633446 67278186 60369185 0 SRX25741555 SRS22381073 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33498 33498 SRR30280762 SRX25741554 SRS22381072 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPG 6 BP4# 6   strain:TU|isolate:36|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPG 6 BP4# 6 BP4# 6 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP4#-6.fastq.gz fastq 188125535.0 1822074.0 BP4# 6.fastq.gz 0:103.25 A:44693539;C:49396733;G:49369506;T:44665757;N:0 103       44693539 49396733 49369506 44665757 0 SRX25741554 SRS22381072 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33499 33499 SRR30280763 SRX25741553 SRS22381071 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPG 5 BP4# 5   strain:TU|isolate:35|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPG 5 BP4# 5 BP4# 5 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP4#-5.fastq.gz fastq 196156699.0 1945323.0 BP4# 5.fastq.gz 0:100.84 A:46353674;C:51900251;G:51633045;T:46269729;N:0 100       46353674 51900251 51633045 46269729 0 SRX25741553 SRS22381071 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33500 33500 SRR30280764 SRX25741552 SRS22381070 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPG 4 BP4# 4   strain:TU|isolate:34|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPG 4 BP4# 4 BP4# 4 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP4#-4.fastq.gz fastq 208993750.0 2025321.0 BP4# 4.fastq.gz 0:103.19 A:49362077;C:55404157;G:54798534;T:49428982;N:0 103       49362077 55404157 54798534 49428982 0 SRX25741552 SRS22381070 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33501 33501 SRR30280765 SRX25741551 SRS22381069 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPG 3 BP4# 3   strain:TU|isolate:33|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPG 3 BP4# 3 BP4# 3 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP4#-3.fastq.gz fastq 202784927.0 1991949.0 BP4# 3.fastq.gz 0:101.80 A:47939013;C:53597649;G:53349661;T:47898604;N:0 101       47939013 53597649 53349661 47898604 0 SRX25741551 SRS22381069 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33502 33502 SRR30280766 SRX25741550 SRS22381068 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPG 2 BP4# 2   strain:TU|isolate:32|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPG 2 BP4# 2 BP4# 2 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP4#-2.fastq.gz fastq 219988278.0 2234932.0 BP4# 2.fastq.gz 0:98.43 A:51797569;C:58514113;G:57965852;T:51710744;N:0 98       51797569 58514113 57965852 51710744 0 SRX25741550 SRS22381068 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33503 33503 SRR30280767 SRX25741549 SRS22381067 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPG 1 BP4# 1   strain:TU|isolate:31|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPG 1 BP4# 1 BP4# 1 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP4#-1.fastq.gz fastq 189677795.0 1882057.0 BP4# 1.fastq.gz 0:100.78 A:44788971;C:50182800;G:49981443;T:44724581;N:0 100       44788971 50182800 49981443 44724581 0 SRX25741549 SRS22381067 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33504 33504 SRR30280768 SRX25741548 SRS22381066 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPS 4 BP2# 4   strain:TU|isolate:4|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPS 4 BP2# 4 BP2# 4 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP2#-4.fastq.gz fastq 53747760.0 507303.0 BP2# 4.fastq.gz 0:105.95 A:12684975;C:14194468;G:14128107;T:12740210;N:0 105       12684975 14194468 14128107 12740210 0 SRX25741548 SRS22381066 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33505 33505 SRR30280769 SRX25741547 SRS22381065 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPF 10 BP3# DMSO 3   strain:TU|isolate:30|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPF 10 BP3# DMSO 3 BP3# DMSO 3 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP3#-DMSO-3.fastq.gz fastq 116330587.0 1173601.0 BP3# DMSO 3.fastq.gz 0:99.12 A:27347180;C:30698198;G:31018076;T:27267133;N:0 99       27347180 30698198 31018076 27267133 0 SRX25741547 SRS22381065 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33506 33506 SRR30280770 SRX25741546 SRS22381064 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPF 9 BP3# DMSO 2   strain:TU|isolate:29|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPF 9 BP3# DMSO 2 BP3# DMSO 2 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP3#-DMSO-2.fastq.gz fastq 73519676.0 743634.0 BP3# DMSO 2.fastq.gz 0:98.87 A:17229747;C:19443112;G:19611469;T:17235348;N:0 98       17229747 19443112 19611469 17235348 0 SRX25741546 SRS22381064 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33507 33507 SRR30280771 SRX25741545 SRS22381063 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPF 8 BP3# DMSO 1   strain:TU|isolate:28|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPF 8 BP3# DMSO 1 BP3# DMSO 1 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP3#-DMSO-1.fastq.gz fastq 255347833.0 2401083.0 BP3# DMSO 1.fastq.gz 0:106.35 A:61082865;C:67174427;G:66429786;T:60660755;N:0 106       61082865 67174427 66429786 60660755 0 SRX25741545 SRS22381063 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33508 33508 SRR30280772 SRX25741544 SRS22381062 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPF 7 BP3# 7   strain:TU|isolate:27|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPF 7 BP3# 7 BP3# 7 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP3#-7.fastq.gz fastq 58605409.0 547138.0 BP3# 7.fastq.gz 0:107.11 A:13947433;C:15493000;G:15274166;T:13890810;N:0 107       13947433 15493000 15274166 13890810 0 SRX25741544 SRS22381062 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33509 33509 SRR30280773 SRX25741543 SRS22381061 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPF 6 BP3# 6   strain:TU|isolate:26|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPF 6 BP3# 6 BP3# 6 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP3#-6.fastq.gz fastq 72949772.0 686281.0 BP3# 6.fastq.gz 0:106.30 A:17339914;C:19406958;G:19027530;T:17175370;N:0 106       17339914 19406958 19027530 17175370 0 SRX25741543 SRS22381061 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33510 33510 SRR30280774 SRX25741542 SRS22381060 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPF 5 BP3# 5   strain:TU|isolate:25|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPF 5 BP3# 5 BP3# 5 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP3#-5.fastq.gz fastq 69794152.0 666660.0 BP3# 5.fastq.gz 0:104.69 A:16463075;C:18508422;G:18337018;T:16485637;N:0 104       16463075 18508422 18337018 16485637 0 SRX25741542 SRS22381060 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33511 33511 SRR30280775 SRX25741541 SRS22381059 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPF 4 BP3# 4   strain:TU|isolate:24|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPF 4 BP3# 4 BP3# 4 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP3#-4.fastq.gz fastq 53721557.0 502232.0 BP3# 4.fastq.gz 0:106.97 A:12820450;C:14258438;G:13986350;T:12656319;N:0 106       12820450 14258438 13986350 12656319 0 SRX25741541 SRS22381059 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33512 33512 SRR30280776 SRX25741540 SRS22381058 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPF 3 BP3# 3   strain:TU|isolate:23|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPF 3 BP3# 3 BP3# 3 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP3#-3.fastq.gz fastq 69156379.0 652416.0 BP3# 3.fastq.gz 0:106.00 A:16429215;C:18238339;G:18163413;T:16325412;N:0 106       16429215 18238339 18163413 16325412 0 SRX25741540 SRS22381058 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33513 33513 SRR30280777 SRX25741539 SRS22381056 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPF 2 BP3# 2   strain:TU|isolate:22|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPF 2 BP3# 2 BP3# 2 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP3#-2.fastq.gz fastq 76545028.0 713057.0 BP3# 2.fastq.gz 0:107.35 A:18167303;C:20199043;G:20017499;T:18161183;N:0 107       18167303 20199043 20017499 18161183 0 SRX25741539 SRS22381056 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33514 33514 SRR30280778 SRX25741538 SRS22381057 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPF 1 BP3# 1   strain:TU|isolate:21|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPF 1 BP3# 1 BP3# 1 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP3#-1.fastq.gz fastq 92675626.0 878172.0 BP3# 1.fastq.gz 0:105.53 A:21857434;C:24661760;G:24166771;T:21989661;N:0 105       21857434 24661760 24166771 21989661 0 SRX25741538 SRS22381057 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;