metadata: run_metadata: 57 rows where experiment.library_layout = "SINGLE", experiment.library_selection = "size fractionation" and experiment.library

57 rows where experiment.library_layout = "SINGLE", experiment.library_selection = "size fractionation" and experiment.library_strategy = "OTHER"

descending

Link	rowid ▼	run.accession	experiment.accession	sample.accession	study.accession	bioproject	study.title	study.alias	study.type	sample.alias	sample.attributes	experiment.title	experiment.alias	experiment.library_name	experiment.design_description	experiment.library_strategy	experiment.library_source	experiment.library_selection	experiment.library_layout	experiment.platform	experiment.instrument_model	experiment.study_ref	run.filename	run.semantic_name	run.total_bases	run.total_spots	run.alias	run.read_lengths	run.base_counts	run.r1_length	run.Acount	run.Ccount	run.Gcount	run.Tcount	run.Ncount	run.experiment	run.pool_member	submission.accession	submission.srasource	submission.bioprojectsource	seqdetective.n_mates	seqdetective.mapping_rate.mate1	seqdetective.nofeature_rate.mate1	seqdetective.sparsity.mate1	seqdetective.pos_strand_rate.mate1	seqdetective.readlen.mate1	seqdetective.judgement.mate1	seqdetective.judgement.reason	platform_family	instrument_generation	read_bias	selection_class	prep_kit	sc_or_bulk	tech_class	technology	submission.bioprojectsource.country	earliest_date	devstage_curation	devstage_curation_coarse	tissue_curation	tissue_curation_coarse
29739	29739	SRR27467672	SRX23139234	SRS20090275	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other	Dome mock R2	strain:TLAB fish\|isolate:NA\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|cultivar:NA\|ecotype:NA\|dev stage:5 hpf\|collection date:2022\|geo loc name:Austria\|sex:mixed\|tissue:whole embryo\|treatment:mock\|BioSampleModel:Model organism or animal	tRAM seq of zebrafish: embryo 5 hpf mock rep2	EV04009	EV04009	RNA was extracted with Trizol tRNA isolated by size selection on denaturing polyacrylamide gel range 50 150 nt. The RNA was end repaired by alkaline deacylation and T4 PNK treatment three prime adapter ligated with T4 RNA ligase 2 reverse transcribed with TGIRT. The cDNA was circularized with CircLigase and amplified with KAPA HiFi polymerase using NEB Next indexed primers.	OTHER	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	NextSeq 500	SRP482074	EV04009.R1.fastq.gz	fastq	609590940.0	4354221.0	EV04009.R1.fastq.gz	0:140	A:155062144;C:147628702;G:168099121;T:138772205;N:28768	140	155062144	147628702	168099121	138772205	28768	SRX23139234	SRS20090275	SRA1781872	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	0.0	0.0	1.0		140	T	under 1.2% mapping rate	illumina	nextseq	unknown	size_fractionation	nebnext	bulk	unknown	unknown	Austria	2024-01-09	Blastula	Embryo	Whole Organism	All anatomical structures
29740	29740	SRR27467673	SRX23139233	SRS20090278	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other	1K cell BS R2	strain:TLAB fish\|isolate:NA\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|cultivar:NA\|ecotype:NA\|dev stage:3 hpf\|collection date:2022\|geo loc name:Austria\|sex:mixed\|tissue:whole embryo\|treatment:BS\|BioSampleModel:Model organism or animal	tRAM seq of zebrafish: embryo 3 hpf BS rep2	EV04008	EV04008	RNA was extracted with Trizol tRNA isolated by size selection on denaturing polyacrylamide gel range 50 150 nt. The RNA was end repaired by alkaline deacylation and T4 PNK treatment three prime adapter ligated with T4 RNA ligase 2 reverse transcribed with TGIRT. The cDNA was circularized with CircLigase and amplified with KAPA HiFi polymerase using NEB Next indexed primers.	OTHER	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	NextSeq 500	SRP482074	EV04008.R1.fastq.gz	fastq	675505180.0	4825037.0	EV04008.R1.fastq.gz	0:140	A:178823976;C:121648962;G:198428643;T:176572292;N:31307	140	178823976	121648962	198428643	176572292	31307	SRX23139233	SRS20090278	SRA1781872	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	0.0	0.0	1.0		140	T	under 1.2% mapping rate	illumina	nextseq	unknown	size_fractionation	nebnext	bulk	unknown	unknown	Austria	2024-01-09	Blastula	Embryo	Whole Organism	All anatomical structures
29741	29741	SRR27467674	SRX23139232	SRS20090272	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other	1K cell DM R2	strain:TLAB fish\|isolate:NA\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|cultivar:NA\|ecotype:NA\|dev stage:3 hpf\|collection date:2022\|geo loc name:Austria\|sex:mixed\|tissue:whole embryo\|treatment:DM\|BioSampleModel:Model organism or animal	tRAM seq of zebrafish: embryo 3 hpf DM rep2	EV04007	EV04007	RNA was extracted with Trizol tRNA isolated by size selection on denaturing polyacrylamide gel range 50 150 nt. The RNA was end repaired by alkaline deacylation and T4 PNK treatment three prime adapter ligated with T4 RNA ligase 2 reverse transcribed with TGIRT. The cDNA was circularized with CircLigase and amplified with KAPA HiFi polymerase using NEB Next indexed primers.	OTHER	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	NextSeq 500	SRP482074	EV04007.R1.fastq.gz	fastq	702064440.0	5014746.0	EV04007.R1.fastq.gz	0:140	A:176719694;C:166467163;G:207893965;T:150951950;N:31668	140	176719694	166467163	207893965	150951950	31668	SRX23139232	SRS20090272	SRA1781872	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	2e-05	0.0	0.99997	1.0	140	T	under 1.2% mapping rate	illumina	nextseq	unknown	size_fractionation	nebnext	bulk	unknown	unknown	Austria	2024-01-09	Blastula	Embryo	Whole Organism	All anatomical structures
29742	29742	SRR27467675	SRX23139231	SRS20090271	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other	1K cell mock R2	strain:TLAB fish\|isolate:NA\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|cultivar:NA\|ecotype:NA\|dev stage:3 hpf\|collection date:2022\|geo loc name:Austria\|sex:mixed\|tissue:whole embryo\|treatment:mock\|BioSampleModel:Model organism or animal	tRAM seq of zebrafish: embryo 3 hpf mock rep2	EV04006	EV04006	RNA was extracted with Trizol tRNA isolated by size selection on denaturing polyacrylamide gel range 50 150 nt. The RNA was end repaired by alkaline deacylation and T4 PNK treatment three prime adapter ligated with T4 RNA ligase 2 reverse transcribed with TGIRT. The cDNA was circularized with CircLigase and amplified with KAPA HiFi polymerase using NEB Next indexed primers.	OTHER	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	NextSeq 500	SRP482074	EV04006.R1.fastq.gz	fastq	664790700.0	4748505.0	EV04006.R1.fastq.gz	0:140	A:172014219;C:146545691;G:200358431;T:145840649;N:31710	140	172014219	146545691	200358431	145840649	31710	SRX23139231	SRS20090271	SRA1781872	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	3e-05	0.0	0.99993	1.0	140	T	under 1.2% mapping rate	illumina	nextseq	unknown	size_fractionation	nebnext	bulk	unknown	unknown	Austria	2024-01-09	Blastula	Embryo	Whole Organism	All anatomical structures
29743	29743	SRR27467676	SRX23139230	SRS20090273	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other	4 cell DM R2	strain:TLAB fish\|isolate:NA\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|cultivar:NA\|ecotype:NA\|dev stage:1 hpf\|collection date:2022\|geo loc name:Austria\|sex:mixed\|tissue:whole embryo\|treatment:DM\|BioSampleModel:Model organism or animal	tRAM seq of zebrafish: embryo 1 hpf DM rep2	EV04004	EV04004	RNA was extracted with Trizol tRNA isolated by size selection on denaturing polyacrylamide gel range 50 150 nt. The RNA was end repaired by alkaline deacylation and T4 PNK treatment three prime adapter ligated with T4 RNA ligase 2 reverse transcribed with TGIRT. The cDNA was circularized with CircLigase and amplified with KAPA HiFi polymerase using NEB Next indexed primers.	OTHER	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	NextSeq 500	SRP482074	EV04004.R1.fastq.gz	fastq	895671560.0	6397654.0	EV04004.R1.fastq.gz	0:140	A:206443066;C:147067097;G:365386937;T:176734600;N:39860	140	206443066	147067097	365386937	176734600	39860	SRX23139230	SRS20090273	SRA1781872	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	0.0	0.0	1.0		140	T	under 1.2% mapping rate	illumina	nextseq	unknown	size_fractionation	nebnext	bulk	unknown	unknown	Austria	2024-01-09	Cleavage	Embryo	Whole Organism	All anatomical structures
29744	29744	SRR27467677	SRX23139229	SRS20090274	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other	4 cell mock R2	strain:TLAB fish\|isolate:NA\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|cultivar:NA\|ecotype:NA\|dev stage:1 hpf\|collection date:2022\|geo loc name:Austria\|sex:mixed\|tissue:whole embryo\|treatment:mock\|BioSampleModel:Model organism or animal	tRAM seq of zebrafish: embryo 1 hpf mock rep2	EV04003	EV04003	RNA was extracted with Trizol tRNA isolated by size selection on denaturing polyacrylamide gel range 50 150 nt. The RNA was end repaired by alkaline deacylation and T4 PNK treatment three prime adapter ligated with T4 RNA ligase 2 reverse transcribed with TGIRT. The cDNA was circularized with CircLigase and amplified with KAPA HiFi polymerase using NEB Next indexed primers.	OTHER	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	NextSeq 500	SRP482074	EV04003.R1.fastq.gz	fastq	664112120.0	4743658.0	EV04003.R1.fastq.gz	0:140	A:163711695;C:142612940;G:211194350;T:146562626;N:30509	140	163711695	142612940	211194350	146562626	30509	SRX23139229	SRS20090274	SRA1781872	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	2e-05	0.0	0.99997	1.0	140	T	under 1.2% mapping rate	illumina	nextseq	unknown	size_fractionation	nebnext	bulk	unknown	unknown	Austria	2024-01-09	Cleavage	Embryo	Whole Organism	All anatomical structures
29745	29745	SRR27467678	SRX23139228	SRS20090268	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other	eggs mock R2	strain:TLAB fish\|isolate:NA\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|cultivar:NA\|ecotype:NA\|dev stage:activated eggs\|collection date:2022\|geo loc name:Austria\|sex:mixed\|tissue:activated eggs\|treatment:mock\|BioSampleModel:Model organism or animal	tRAM seq of zebrafish: eggs mock rep2	EV04001	EV04001	RNA was extracted with Trizol tRNA isolated by size selection on denaturing polyacrylamide gel range 50 150 nt. The RNA was end repaired by alkaline deacylation and T4 PNK treatment three prime adapter ligated with T4 RNA ligase 2 reverse transcribed with TGIRT. The cDNA was circularized with CircLigase and amplified with KAPA HiFi polymerase using NEB Next indexed primers.	OTHER	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	NextSeq 500	SRP482074	EV04001.R1.fastq.gz	fastq	970037880.0	6928842.0	EV04001.R1.fastq.gz	0:140	A:258735538;C:237798398;G:268588390;T:204871983;N:43571	140	258735538	237798398	268588390	204871983	43571	SRX23139228	SRS20090268	SRA1781872	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	0.0	0.0	1.0		140	T	under 1.2% mapping rate	illumina	nextseq	unknown	size_fractionation	nebnext	bulk	unknown	unknown	Austria	2024-01-09	Undetermined	Embryo	Undetermined	Embryo Imprecise
29747	29747	SRR27467680	SRX23139226	SRS20090267	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other	24h BS R2	strain:TLAB fish\|isolate:NA\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|cultivar:NA\|ecotype:NA\|dev stage:24 hpf\|collection date:2022\|geo loc name:Austria\|sex:mixed\|tissue:whole embryo\|treatment:BS\|BioSampleModel:Model organism or animal	tRAM seq of zebrafish: embryo 24 hpf BS rep2	EV03009	EV03009	RNA was extracted with Trizol tRNA isolated by size selection on denaturing polyacrylamide gel range 50 150 nt. The RNA was end repaired by alkaline deacylation and T4 PNK treatment three prime adapter ligated with T4 RNA ligase 2 reverse transcribed with TGIRT. The cDNA was circularized with CircLigase and amplified with KAPA HiFi polymerase using NEB Next indexed primers.	OTHER	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	NextSeq 500	SRP482074	EV03009.R1.fastq.gz	fastq	168931280.0	2222780.0	EV03009.R1.fastq.gz	0:76	A:49803604;C:36479774;G:37758990;T:44874154;N:14758	76	49803604	36479774	37758990	44874154	14758	SRX23139226	SRS20090267	SRA1781872	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	0.00034	0.0002	0.99965	0.5	76	T	under 1.2% mapping rate	illumina	nextseq	unknown	size_fractionation	nebnext	bulk	unknown	unknown	Austria	2024-01-09	Pharyngula	Embryo	Whole Organism	All anatomical structures
29748	29748	SRR27467681	SRX23139225	SRS20090266	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other	24h DM R2	strain:TLAB fish\|isolate:NA\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|cultivar:NA\|ecotype:NA\|dev stage:24 hpf\|collection date:2022\|geo loc name:Austria\|sex:mixed\|tissue:whole embryo\|treatment:DM\|BioSampleModel:Model organism or animal	tRAM seq of zebrafish: embryo 24 hpf DM rep2	EV03008	EV03008	RNA was extracted with Trizol tRNA isolated by size selection on denaturing polyacrylamide gel range 50 150 nt. The RNA was end repaired by alkaline deacylation and T4 PNK treatment three prime adapter ligated with T4 RNA ligase 2 reverse transcribed with TGIRT. The cDNA was circularized with CircLigase and amplified with KAPA HiFi polymerase using NEB Next indexed primers.	OTHER	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	NextSeq 500	SRP482074	EV03008.R1.fastq.gz	fastq	200878792.0	2643142.0	EV03008.R1.fastq.gz	0:76	A:46955288;C:54746275;G:55887832;T:43270561;N:18836	76	46955288	54746275	55887832	43270561	18836	SRX23139225	SRS20090266	SRA1781872	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	0.29408	0.00737	0.91823	0.54549	76	B	usable mapping rate	illumina	nextseq	unknown	size_fractionation	nebnext	bulk	unknown	unknown	Austria	2024-01-09	Pharyngula	Embryo	Whole Organism	All anatomical structures
29749	29749	SRR27467682	SRX23139224	SRS20090269	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other	24h mock R2	strain:TLAB fish\|isolate:NA\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|cultivar:NA\|ecotype:NA\|dev stage:24 hpf\|collection date:2022\|geo loc name:Austria\|sex:mixed\|tissue:whole embryo\|treatment:mock\|BioSampleModel:Model organism or animal	tRAM seq of zebrafish: embryo 24 hpf mock rep2	EV03007	EV03007	RNA was extracted with Trizol tRNA isolated by size selection on denaturing polyacrylamide gel range 50 150 nt. The RNA was end repaired by alkaline deacylation and T4 PNK treatment three prime adapter ligated with T4 RNA ligase 2 reverse transcribed with TGIRT. The cDNA was circularized with CircLigase and amplified with KAPA HiFi polymerase using NEB Next indexed primers.	OTHER	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	NextSeq 500	SRP482074	EV03007.R1.fastq.gz	fastq	175642840.0	2311090.0	EV03007.R1.fastq.gz	0:76	A:44745275;C:48908904;G:44862157;T:37111895;N:14609	76	44745275	48908904	44862157	37111895	14609	SRX23139224	SRS20090269	SRA1781872	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	0.06887	0.00273	0.96623	0.48721	76	B	usable mapping rate	illumina	nextseq	unknown	size_fractionation	nebnext	bulk	unknown	unknown	Austria	2024-01-09	Pharyngula	Embryo	Whole Organism	All anatomical structures
29750	29750	SRR27467683	SRX23139223	SRS20090265	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other	Bud BS R2	strain:TLAB fish\|isolate:NA\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|cultivar:NA\|ecotype:NA\|dev stage:10 hpf\|collection date:2022\|geo loc name:Austria\|sex:mixed\|tissue:whole embryo\|treatment:BS\|BioSampleModel:Model organism or animal	tRAM seq of zebrafish: embryo 10 hpf BS rep2	EV04014	EV04014	RNA was extracted with Trizol tRNA isolated by size selection on denaturing polyacrylamide gel range 50 150 nt. The RNA was end repaired by alkaline deacylation and T4 PNK treatment three prime adapter ligated with T4 RNA ligase 2 reverse transcribed with TGIRT. The cDNA was circularized with CircLigase and amplified with KAPA HiFi polymerase using NEB Next indexed primers.	OTHER	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	NextSeq 500	SRP482074	EV04014.R1.fastq.gz	fastq	774901260.0	5535009.0	EV04014.R1.fastq.gz	0:140	A:193865579;C:138861953;G:251102013;T:191036071;N:35644	140	193865579	138861953	251102013	191036071	35644	SRX23139223	SRS20090265	SRA1781872	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	0.0	0.0	1.0		140	T	under 1.2% mapping rate	illumina	nextseq	unknown	size_fractionation	nebnext	bulk	unknown	unknown	Austria	2024-01-09	Gastrula	Embryo	Whole Organism	All anatomical structures
29751	29751	SRR27467684	SRX23139222	SRS20090264	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other	Bud DM R2	strain:TLAB fish\|isolate:NA\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|cultivar:NA\|ecotype:NA\|dev stage:10 hpf\|collection date:2022\|geo loc name:Austria\|sex:mixed\|tissue:whole embryo\|treatment:DM\|BioSampleModel:Model organism or animal	tRAM seq of zebrafish: embryo 10 hpf DM rep2	EV04013	EV04013	RNA was extracted with Trizol tRNA isolated by size selection on denaturing polyacrylamide gel range 50 150 nt. The RNA was end repaired by alkaline deacylation and T4 PNK treatment three prime adapter ligated with T4 RNA ligase 2 reverse transcribed with TGIRT. The cDNA was circularized with CircLigase and amplified with KAPA HiFi polymerase using NEB Next indexed primers.	OTHER	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	NextSeq 500	SRP482074	EV04013.R1.fastq.gz	fastq	666372840.0	4759806.0	EV04013.R1.fastq.gz	0:140	A:172923134;C:142243998;G:211584978;T:139591020;N:29710	140	172923134	142243998	211584978	139591020	29710	SRX23139222	SRS20090264	SRA1781872	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	3e-05	0.0	0.99991	1.0	140	T	under 1.2% mapping rate	illumina	nextseq	unknown	size_fractionation	nebnext	bulk	unknown	unknown	Austria	2024-01-09	Gastrula	Embryo	Whole Organism	All anatomical structures
29752	29752	SRR27467685	SRX23139221	SRS20090262	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other	Bud mock R2	strain:TLAB fish\|isolate:NA\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|cultivar:NA\|ecotype:NA\|dev stage:10 hpf\|collection date:2022\|geo loc name:Austria\|sex:mixed\|tissue:whole embryo\|treatment:mock\|BioSampleModel:Model organism or animal	tRAM seq of zebrafish: embryo 10 hpf mock rep2	EV04012	EV04012	RNA was extracted with Trizol tRNA isolated by size selection on denaturing polyacrylamide gel range 50 150 nt. The RNA was end repaired by alkaline deacylation and T4 PNK treatment three prime adapter ligated with T4 RNA ligase 2 reverse transcribed with TGIRT. The cDNA was circularized with CircLigase and amplified with KAPA HiFi polymerase using NEB Next indexed primers.	OTHER	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	NextSeq 500	SRP482074	EV04012.R1.fastq.gz	fastq	628769540.0	4491211.0	EV04012.R1.fastq.gz	0:140	A:160925901;C:143204697;G:183224867;T:141385307;N:28768	140	160925901	143204697	183224867	141385307	28768	SRX23139221	SRS20090262	SRA1781872	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	1e-05	0.0	0.99997	1.0	140	T	under 1.2% mapping rate	illumina	nextseq	unknown	size_fractionation	nebnext	bulk	unknown	unknown	Austria	2024-01-09	Gastrula	Embryo	Whole Organism	All anatomical structures
29753	29753	SRR27467686	SRX23139220	SRS20090263	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other	Dome BS R2	strain:TLAB fish\|isolate:NA\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|cultivar:NA\|ecotype:NA\|dev stage:5 hpf\|collection date:2022\|geo loc name:Austria\|sex:mixed\|tissue:whole embryo\|treatment:BS\|BioSampleModel:Model organism or animal	tRAM seq of zebrafish: embryo 5 hpf BS rep2	EV04011	EV04011	RNA was extracted with Trizol tRNA isolated by size selection on denaturing polyacrylamide gel range 50 150 nt. The RNA was end repaired by alkaline deacylation and T4 PNK treatment three prime adapter ligated with T4 RNA ligase 2 reverse transcribed with TGIRT. The cDNA was circularized with CircLigase and amplified with KAPA HiFi polymerase using NEB Next indexed primers.	OTHER	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	NextSeq 500	SRP482074	EV04011.R1.fastq.gz	fastq	720913200.0	5149380.0	EV04011.R1.fastq.gz	0:140	A:185414155;C:126110104;G:238649631;T:170706590;N:32720	140	185414155	126110104	238649631	170706590	32720	SRX23139220	SRS20090263	SRA1781872	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	0.0	0.0	1.0		140	T	under 1.2% mapping rate	illumina	nextseq	unknown	size_fractionation	nebnext	bulk	unknown	unknown	Austria	2024-01-09	Blastula	Embryo	Whole Organism	All anatomical structures
29754	29754	SRR27467687	SRX23139219	SRS20090259	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other	Dome DM R2	strain:TLAB fish\|isolate:NA\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|cultivar:NA\|ecotype:NA\|dev stage:5 hpf\|collection date:2022\|geo loc name:Austria\|sex:mixed\|tissue:whole embryo\|treatment:DM\|BioSampleModel:Model organism or animal	tRAM seq of zebrafish: embryo 5 hpf DM rep2	EV04010	EV04010	RNA was extracted with Trizol tRNA isolated by size selection on denaturing polyacrylamide gel range 50 150 nt. The RNA was end repaired by alkaline deacylation and T4 PNK treatment three prime adapter ligated with T4 RNA ligase 2 reverse transcribed with TGIRT. The cDNA was circularized with CircLigase and amplified with KAPA HiFi polymerase using NEB Next indexed primers.	OTHER	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	NextSeq 500	SRP482074	EV04010.R1.fastq.gz	fastq	443650200.0	3168930.0	EV04010.R1.fastq.gz	0:140	A:114663509;C:102512276;G:135709753;T:90744641;N:20021	140	114663509	102512276	135709753	90744641	20021	SRX23139219	SRS20090259	SRA1781872	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	1e-05	0.0	0.99997	1.0	140	T	under 1.2% mapping rate	illumina	nextseq	unknown	size_fractionation	nebnext	bulk	unknown	unknown	Austria	2024-01-09	Blastula	Embryo	Whole Organism	All anatomical structures
29757	29757	SRR27437477	SRX23109820	SRS20064574	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other	1K cell mock R3	strain:TLAB fish\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|dev stage:3 hpf\|collection date:2022\|geo loc name:Austria\|sex:mixed\|tissue:whole embryo\|treatment:mock\|BioSampleModel:Model organism or animal	tRAM seq of zebrafish: embryo 3 hpf mock rep3	EV07007	EV07007	RNA was extracted with Trizol tRNA isolated by size selection on denaturing polyacrylamide gel range 50 150 nt. The RNA was end repaired by alkaline deacylation and T4 PNK treatment three prime adapter ligated with T4 RNA ligase 2 reverse transcribed with TGIRT. The cDNA was circularized with CircLigase and amplified with KAPA HiFi polymerase using NEB Next indexed primers.	OTHER	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	NextSeq 500	SRP482074	EV07007.R1.fastq.gz	fastq	479994620.0	3428533.0	EV07007.R1.fastq.gz	0:140	A:124628886;C:116843590;G:123136721;T:115372734;N:12689	140	124628886	116843590	123136721	115372734	12689	SRX23109820	SRS20064574	SRA1780298	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	6e-05	1e-05	0.99989	1.0	140	T	under 1.2% mapping rate	illumina	nextseq	unknown	size_fractionation	nebnext	bulk	unknown	unknown	Austria	2024-01-06	Blastula	Embryo	Whole Organism	All anatomical structures
29758	29758	SRR27437478	SRX23109819	SRS20064573	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other	4 cell BS R3	strain:TLAB fish\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|dev stage:1 hpf\|collection date:2022\|geo loc name:Austria\|sex:mixed\|tissue:whole embryo\|treatment:BS\|BioSampleModel:Model organism or animal	tRAM seq of zebrafish: embryo 1 hpf BS rep3	EV07006	EV07006	RNA was extracted with Trizol tRNA isolated by size selection on denaturing polyacrylamide gel range 50 150 nt. The RNA was end repaired by alkaline deacylation and T4 PNK treatment three prime adapter ligated with T4 RNA ligase 2 reverse transcribed with TGIRT. The cDNA was circularized with CircLigase and amplified with KAPA HiFi polymerase using NEB Next indexed primers.	OTHER	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	NextSeq 500	SRP482074	EV07006.R1.fastq.gz	fastq	2584527680.0	18460912.0	EV07006.R1.fastq.gz	0:140	A:685107500;C:367766834;G:717359848;T:814224206;N:69292	140	685107500	367766834	717359848	814224206	69292	SRX23109819	SRS20064573	SRA1780298	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	2e-05	1e-05	1.0		140	T	under 1.2% mapping rate	illumina	nextseq	unknown	size_fractionation	nebnext	bulk	unknown	unknown	Austria	2024-01-06	Cleavage	Embryo	Whole Organism	All anatomical structures
29759	29759	SRR27437479	SRX23109818	SRS20064571	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other	4 cell DM R3	strain:TLAB fish\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|dev stage:1 hpf\|collection date:2022\|geo loc name:Austria\|sex:mixed\|tissue:whole embryo\|treatment:DM\|BioSampleModel:Model organism or animal	tRAM seq of zebrafish: embryo 1 hpf DM rep3	EV07005	EV07005	RNA was extracted with Trizol tRNA isolated by size selection on denaturing polyacrylamide gel range 50 150 nt. The RNA was end repaired by alkaline deacylation and T4 PNK treatment three prime adapter ligated with T4 RNA ligase 2 reverse transcribed with TGIRT. The cDNA was circularized with CircLigase and amplified with KAPA HiFi polymerase using NEB Next indexed primers.	OTHER	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	NextSeq 500	SRP482074	EV07005.R1.fastq.gz	fastq	713829480.0	5098782.0	EV07005.R1.fastq.gz	0:140	A:183575304;C:168886779;G:213156258;T:148191838;N:19301	140	183575304	168886779	213156258	148191838	19301	SRX23109818	SRS20064571	SRA1780298	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	5e-05	0.0	0.99989	1.0	140	T	under 1.2% mapping rate	illumina	nextseq	unknown	size_fractionation	nebnext	bulk	unknown	unknown	Austria	2024-01-06	Cleavage	Embryo	Whole Organism	All anatomical structures
29760	29760	SRR27437480	SRX23109817	SRS20064572	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other	4 cell mock R3	strain:TLAB fish\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|dev stage:1 hpf\|collection date:2022\|geo loc name:Austria\|sex:mixed\|tissue:whole embryo\|treatment:mock\|BioSampleModel:Model organism or animal	tRAM seq of zebrafish: embryo 1 hpf mock rep3	EV07004	EV07004	RNA was extracted with Trizol tRNA isolated by size selection on denaturing polyacrylamide gel range 50 150 nt. The RNA was end repaired by alkaline deacylation and T4 PNK treatment three prime adapter ligated with T4 RNA ligase 2 reverse transcribed with TGIRT. The cDNA was circularized with CircLigase and amplified with KAPA HiFi polymerase using NEB Next indexed primers.	OTHER	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	NextSeq 500	SRP482074	EV07004.R1.fastq.gz	fastq	517336680.0	3695262.0	EV07004.R1.fastq.gz	0:140	A:136783049;C:131207858;G:139873280;T:109458276;N:14217	140	136783049	131207858	139873280	109458276	14217	SRX23109817	SRS20064572	SRA1780298	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	7e-05	0.0	0.99981	0.7	140	T	under 1.2% mapping rate	illumina	nextseq	unknown	size_fractionation	nebnext	bulk	unknown	unknown	Austria	2024-01-06	Cleavage	Embryo	Whole Organism	All anatomical structures
29761	29761	SRR27437481	SRX23109816	SRS20064569	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other	eggs BS R3	strain:TLAB fish\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|dev stage:activated eggs\|collection date:2022\|geo loc name:Austria\|sex:mixed\|tissue:activated eggs\|treatment:BS\|BioSampleModel:Model organism or animal	tRAM seq of zebrafish: eggs BS rep3	EV07003	EV07003	RNA was extracted with Trizol tRNA isolated by size selection on denaturing polyacrylamide gel range 50 150 nt. The RNA was end repaired by alkaline deacylation and T4 PNK treatment three prime adapter ligated with T4 RNA ligase 2 reverse transcribed with TGIRT. The cDNA was circularized with CircLigase and amplified with KAPA HiFi polymerase using NEB Next indexed primers.	OTHER	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	NextSeq 500	SRP482074	EV07003.R1.fastq.gz	fastq	688960160.0	4921144.0	EV07003.R1.fastq.gz	0:140	A:187831021;C:119362814;G:195214528;T:186533242;N:18555	140	187831021	119362814	195214528	186533242	18555	SRX23109816	SRS20064569	SRA1780298	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	0.0	0.0	1.0		140	T	under 1.2% mapping rate	illumina	nextseq	unknown	size_fractionation	nebnext	bulk	unknown	unknown	Austria	2024-01-06	Undetermined	Embryo	Undetermined	Embryo Imprecise
29762	29762	SRR27437482	SRX23109815	SRS20064568	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other	eggs DM R3	strain:TLAB fish\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|dev stage:activated eggs\|collection date:2022\|geo loc name:Austria\|sex:mixed\|tissue:activated eggs\|treatment:DM\|BioSampleModel:Model organism or animal	tRAM seq of zebrafish: eggs DM rep3	EV07002	EV07002	RNA was extracted with Trizol tRNA isolated by size selection on denaturing polyacrylamide gel range 50 150 nt. The RNA was end repaired by alkaline deacylation and T4 PNK treatment three prime adapter ligated with T4 RNA ligase 2 reverse transcribed with TGIRT. The cDNA was circularized with CircLigase and amplified with KAPA HiFi polymerase using NEB Next indexed primers.	OTHER	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	NextSeq 500	SRP482074	EV07002.R1.fastq.gz	fastq	520725380.0	3719467.0	EV07002.R1.fastq.gz	0:140	A:138972126;C:125739732;G:142785467;T:113214166;N:13889	140	138972126	125739732	142785467	113214166	13889	SRX23109815	SRS20064568	SRA1780298	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	0.00014	1e-05	0.99969	0.5	140	T	under 1.2% mapping rate	illumina	nextseq	unknown	size_fractionation	nebnext	bulk	unknown	unknown	Austria	2024-01-06	Undetermined	Embryo	Undetermined	Embryo Imprecise
29763	29763	SRR27437483	SRX23109814	SRS20064570	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other	eggs mock R3	strain:TLAB fish\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|dev stage:activated eggs\|collection date:2022\|geo loc name:Austria\|sex:mixed\|tissue:activated eggs\|treatment:mock\|BioSampleModel:Model organism or animal	tRAM seq of zebrafish: eggs mock rep3	EV07001	EV07001	RNA was extracted with Trizol tRNA isolated by size selection on denaturing polyacrylamide gel range 50 150 nt. The RNA was end repaired by alkaline deacylation and T4 PNK treatment three prime adapter ligated with T4 RNA ligase 2 reverse transcribed with TGIRT. The cDNA was circularized with CircLigase and amplified with KAPA HiFi polymerase using NEB Next indexed primers.	OTHER	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	NextSeq 500	SRP482074	EV07001.R1.fastq.gz	fastq	684538960.0	4889564.0	EV07001.R1.fastq.gz	0:140	A:178906891;C:169237174;G:192342342;T:144034095;N:18458	140	178906891	169237174	192342342	144034095	18458	SRX23109814	SRS20064570	SRA1780298	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	0.0001	1e-05	0.99977	0.76923	140	T	under 1.2% mapping rate	illumina	nextseq	unknown	size_fractionation	nebnext	bulk	unknown	unknown	Austria	2024-01-06	Undetermined	Embryo	Undetermined	Embryo Imprecise
29764	29764	SRR27437484	SRX23109813	SRS20064567	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other	24h BS R3	strain:TLAB fish\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|dev stage:24 hpf\|collection date:2022\|geo loc name:Austria\|sex:mixed\|tissue:whole embryo\|treatment:BS\|BioSampleModel:Model organism or animal	tRAM seq of zebrafish: embryo 24 hpf BS rep3	EV07018	EV07018	RNA was extracted with Trizol tRNA isolated by size selection on denaturing polyacrylamide gel range 50 150 nt. The RNA was end repaired by alkaline deacylation and T4 PNK treatment three prime adapter ligated with T4 RNA ligase 2 reverse transcribed with TGIRT. The cDNA was circularized with CircLigase and amplified with KAPA HiFi polymerase using NEB Next indexed primers.	OTHER	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	NextSeq 500	SRP482074	EV07018.R1.fastq.gz	fastq	887731180.0	6340937.0	EV07018.R1.fastq.gz	0:140	A:204102176;C:148262233;G:350287017;T:185056779;N:22975	140	204102176	148262233	350287017	185056779	22975	SRX23109813	SRS20064567	SRA1780298	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	0.0	0.0	1.0		140	T	under 1.2% mapping rate	illumina	nextseq	unknown	size_fractionation	nebnext	bulk	unknown	unknown	Austria	2024-01-06	Pharyngula	Embryo	Whole Organism	All anatomical structures
29765	29765	SRR27437485	SRX23109812	SRS20064566	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other	ovary BS R3	strain:TLAB fish\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|dev stage:adult\|collection date:2022\|geo loc name:Austria\|sex:female\|tissue:ovary\|treatment:BS\|BioSampleModel:Model organism or animal	tRAM seq of zebrafish: ovary BS rep3	EV04017	EV04017	RNA was extracted with Trizol tRNA isolated by size selection on denaturing polyacrylamide gel range 50 150 nt. The RNA was end repaired by alkaline deacylation and T4 PNK treatment three prime adapter ligated with T4 RNA ligase 2 reverse transcribed with TGIRT. The cDNA was circularized with CircLigase and amplified with KAPA HiFi polymerase using NEB Next indexed primers.	OTHER	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	NextSeq 500	SRP482074	EV04017.R1.fastq.gz	fastq	576584540.0	4118461.0	EV04017.R1.fastq.gz	0:140	A:149516980;C:91163801;G:169046762;T:166831111;N:25886	140	149516980	91163801	169046762	166831111	25886	SRX23109812	SRS20064566	SRA1780298	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	0.0	0.0	1.0		140	T	under 1.2% mapping rate	illumina	nextseq	unknown	size_fractionation	nebnext	bulk	unknown	unknown	Austria	2024-01-06	Adult	Adult	Gonad	Reproductive System
29766	29766	SRR27437486	SRX23109811	SRS20064565	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other	24h DM R3	strain:TLAB fish\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|dev stage:24 hpf\|collection date:2022\|geo loc name:Austria\|sex:mixed\|tissue:whole embryo\|treatment:DM\|BioSampleModel:Model organism or animal	tRAM seq of zebrafish: embryo 24 hpf DM rep3	EV07017	EV07017	RNA was extracted with Trizol tRNA isolated by size selection on denaturing polyacrylamide gel range 50 150 nt. The RNA was end repaired by alkaline deacylation and T4 PNK treatment three prime adapter ligated with T4 RNA ligase 2 reverse transcribed with TGIRT. The cDNA was circularized with CircLigase and amplified with KAPA HiFi polymerase using NEB Next indexed primers.	OTHER	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	NextSeq 500	SRP482074	EV07017.R1.fastq.gz	fastq	466089960.0	3329214.0	EV07017.R1.fastq.gz	0:140	A:117818387;C:108651920;G:144753443;T:94853810;N:12400	140	117818387	108651920	144753443	94853810	12400	SRX23109811	SRS20064565	SRA1780298	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	0.0	0.0	1.0		140	T	under 1.2% mapping rate	illumina	nextseq	unknown	size_fractionation	nebnext	bulk	unknown	unknown	Austria	2024-01-06	Pharyngula	Embryo	Whole Organism	All anatomical structures
29767	29767	SRR27437487	SRX23109810	SRS20064563	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other	24h mock R3	strain:TLAB fish\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|dev stage:24 hpf\|collection date:2022\|geo loc name:Austria\|sex:mixed\|tissue:whole embryo\|treatment:mock\|BioSampleModel:Model organism or animal	tRAM seq of zebrafish: embryo 24 hpf mock rep3	EV07016	EV07016	RNA was extracted with Trizol tRNA isolated by size selection on denaturing polyacrylamide gel range 50 150 nt. The RNA was end repaired by alkaline deacylation and T4 PNK treatment three prime adapter ligated with T4 RNA ligase 2 reverse transcribed with TGIRT. The cDNA was circularized with CircLigase and amplified with KAPA HiFi polymerase using NEB Next indexed primers.	OTHER	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	NextSeq 500	SRP482074	EV07016.R1.fastq.gz	fastq	638674120.0	4561958.0	EV07016.R1.fastq.gz	0:140	A:159572532;C:147135537;G:186885553;T:145063254;N:17244	140	159572532	147135537	186885553	145063254	17244	SRX23109810	SRS20064563	SRA1780298	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	4e-05	0.0	0.99993	0.0	140	T	under 1.2% mapping rate	illumina	nextseq	unknown	size_fractionation	nebnext	bulk	unknown	unknown	Austria	2024-01-06	Pharyngula	Embryo	Whole Organism	All anatomical structures
29768	29768	SRR27437488	SRX23109809	SRS20064564	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other	Bud BS R3	strain:TLAB fish\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|dev stage:10 hpf\|collection date:2022\|geo loc name:Austria\|sex:mixed\|tissue:whole embryo\|treatment:BS\|BioSampleModel:Model organism or animal	tRAM seq of zebrafish: embryo 10 hpf BS rep3	EV07015	EV07015	RNA was extracted with Trizol tRNA isolated by size selection on denaturing polyacrylamide gel range 50 150 nt. The RNA was end repaired by alkaline deacylation and T4 PNK treatment three prime adapter ligated with T4 RNA ligase 2 reverse transcribed with TGIRT. The cDNA was circularized with CircLigase and amplified with KAPA HiFi polymerase using NEB Next indexed primers.	OTHER	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	NextSeq 500	SRP482074	EV07015.R1.fastq.gz	fastq	598389400.0	4274210.0	EV07015.R1.fastq.gz	0:140	A:150315140;C:106310211;G:186765596;T:154982225;N:16228	140	150315140	106310211	186765596	154982225	16228	SRX23109809	SRS20064564	SRA1780298	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	0.0	0.0	1.0		140	T	under 1.2% mapping rate	illumina	nextseq	unknown	size_fractionation	nebnext	bulk	unknown	unknown	Austria	2024-01-06	Gastrula	Embryo	Whole Organism	All anatomical structures
29769	29769	SRR27437489	SRX23109808	SRS20064562	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other	Bud DM R3	strain:TLAB fish\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|dev stage:10 hpf\|collection date:2022\|geo loc name:Austria\|sex:mixed\|tissue:whole embryo\|treatment:DM\|BioSampleModel:Model organism or animal	tRAM seq of zebrafish: embryo 10 hpf DM rep3	EV07014	EV07014	RNA was extracted with Trizol tRNA isolated by size selection on denaturing polyacrylamide gel range 50 150 nt. The RNA was end repaired by alkaline deacylation and T4 PNK treatment three prime adapter ligated with T4 RNA ligase 2 reverse transcribed with TGIRT. The cDNA was circularized with CircLigase and amplified with KAPA HiFi polymerase using NEB Next indexed primers.	OTHER	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	NextSeq 500	SRP482074	EV07014.R1.fastq.gz	fastq	739056780.0	5278977.0	EV07014.R1.fastq.gz	0:140	A:197948890;C:178761090;G:200265458;T:162060992;N:20350	140	197948890	178761090	200265458	162060992	20350	SRX23109808	SRS20064562	SRA1780298	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	3e-05	0.0	0.99995	0.5	140	T	under 1.2% mapping rate	illumina	nextseq	unknown	size_fractionation	nebnext	bulk	unknown	unknown	Austria	2024-01-06	Gastrula	Embryo	Whole Organism	All anatomical structures
29770	29770	SRR27437490	SRX23109807	SRS20064561	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other	Bud mock R3	strain:TLAB fish\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|dev stage:10 hpf\|collection date:2022\|geo loc name:Austria\|sex:mixed\|tissue:whole embryo\|treatment:mock\|BioSampleModel:Model organism or animal	tRAM seq of zebrafish: embryo 10 hpf mock rep3	EV07013	EV07013	RNA was extracted with Trizol tRNA isolated by size selection on denaturing polyacrylamide gel range 50 150 nt. The RNA was end repaired by alkaline deacylation and T4 PNK treatment three prime adapter ligated with T4 RNA ligase 2 reverse transcribed with TGIRT. The cDNA was circularized with CircLigase and amplified with KAPA HiFi polymerase using NEB Next indexed primers.	OTHER	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	NextSeq 500	SRP482074	EV07013.R1.fastq.gz	fastq	844338040.0	6030986.0	EV07013.R1.fastq.gz	0:140	A:217780710;C:182517044;G:251974206;T:192043675;N:22405	140	217780710	182517044	251974206	192043675	22405	SRX23109807	SRS20064561	SRA1780298	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	4e-05	0.0	0.99993	1.0	140	T	under 1.2% mapping rate	illumina	nextseq	unknown	size_fractionation	nebnext	bulk	unknown	unknown	Austria	2024-01-06	Gastrula	Embryo	Whole Organism	All anatomical structures
29771	29771	SRR27437491	SRX23109806	SRS20064560	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other	Dome BS R3	strain:TLAB fish\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|dev stage:5 hpf\|collection date:2022\|geo loc name:Austria\|sex:mixed\|tissue:whole embryo\|treatment:BS\|BioSampleModel:Model organism or animal	tRAM seq of zebrafish: embryo 5 hpf BS rep3	EV07011	EV07011	RNA was extracted with Trizol tRNA isolated by size selection on denaturing polyacrylamide gel range 50 150 nt. The RNA was end repaired by alkaline deacylation and T4 PNK treatment three prime adapter ligated with T4 RNA ligase 2 reverse transcribed with TGIRT. The cDNA was circularized with CircLigase and amplified with KAPA HiFi polymerase using NEB Next indexed primers.	OTHER	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	NextSeq 500	SRP482074	EV07011.R1.fastq.gz	fastq	893528580.0	6382347.0	EV07011.R1.fastq.gz	0:140	A:240101890;C:155985797;G:262065322;T:235351334;N:24237	140	240101890	155985797	262065322	235351334	24237	SRX23109806	SRS20064560	SRA1780298	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	0.0	0.0	1.0		140	T	under 1.2% mapping rate	illumina	nextseq	unknown	size_fractionation	nebnext	bulk	unknown	unknown	Austria	2024-01-06	Blastula	Embryo	Whole Organism	All anatomical structures
29772	29772	SRR27437492	SRX23109805	SRS20064559	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other	Dome DM R3	strain:TLAB fish\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|dev stage:5 hpf\|collection date:2022\|geo loc name:Austria\|sex:mixed\|tissue:whole embryo\|treatment:DM\|BioSampleModel:Model organism or animal	tRAM seq of zebrafish: embryo 5 hpf DM rep3	EV07012	EV07012	RNA was extracted with Trizol tRNA isolated by size selection on denaturing polyacrylamide gel range 50 150 nt. The RNA was end repaired by alkaline deacylation and T4 PNK treatment three prime adapter ligated with T4 RNA ligase 2 reverse transcribed with TGIRT. The cDNA was circularized with CircLigase and amplified with KAPA HiFi polymerase using NEB Next indexed primers.	OTHER	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	NextSeq 500	SRP482074	EV07012.R1.fastq.gz	fastq	797662600.0	5697590.0	EV07012.R1.fastq.gz	0:140	A:201908589;C:182656132;G:249672167;T:163404182;N:21530	140	201908589	182656132	249672167	163404182	21530	SRX23109805	SRS20064559	SRA1780298	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	3e-05	0.0	0.99991	0.75	140	T	under 1.2% mapping rate	illumina	nextseq	unknown	size_fractionation	nebnext	bulk	unknown	unknown	Austria	2024-01-06	Blastula	Embryo	Whole Organism	All anatomical structures
29773	29773	SRR27437493	SRX23109804	SRS20064558	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other	Dome mock R3	strain:TLAB fish\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|dev stage:5 hpf\|collection date:2022\|geo loc name:Austria\|sex:mixed\|tissue:whole embryo\|treatment:mock\|BioSampleModel:Model organism or animal	tRAM seq of zebrafish: embryo 5 hpf mock rep3	EV07010	EV07010	RNA was extracted with Trizol tRNA isolated by size selection on denaturing polyacrylamide gel range 50 150 nt. The RNA was end repaired by alkaline deacylation and T4 PNK treatment three prime adapter ligated with T4 RNA ligase 2 reverse transcribed with TGIRT. The cDNA was circularized with CircLigase and amplified with KAPA HiFi polymerase using NEB Next indexed primers.	OTHER	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	NextSeq 500	SRP482074	EV07010.R1.fastq.gz	fastq	467593280.0	3339952.0	EV07010.R1.fastq.gz	0:140	A:122604957;C:118747514;G:124074466;T:102153374;N:12969	140	122604957	118747514	124074466	102153374	12969	SRX23109804	SRS20064558	SRA1780298	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	4e-05	0.0	0.99993	1.0	140	T	under 1.2% mapping rate	illumina	nextseq	unknown	size_fractionation	nebnext	bulk	unknown	unknown	Austria	2024-01-06	Blastula	Embryo	Whole Organism	All anatomical structures
29774	29774	SRR27437494	SRX23109803	SRS20064557	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other	1K cell BS R3	strain:TLAB fish\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|dev stage:3 hpf\|collection date:2022\|geo loc name:Austria\|sex:mixed\|tissue:whole embryo\|treatment:BS\|BioSampleModel:Model organism or animal	tRAM seq of zebrafish: embryo 3 hpf BS rep3	EV07008	EV07008	RNA was extracted with Trizol tRNA isolated by size selection on denaturing polyacrylamide gel range 50 150 nt. The RNA was end repaired by alkaline deacylation and T4 PNK treatment three prime adapter ligated with T4 RNA ligase 2 reverse transcribed with TGIRT. The cDNA was circularized with CircLigase and amplified with KAPA HiFi polymerase using NEB Next indexed primers.	OTHER	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	NextSeq 500	SRP482074	EV07008.R1.fastq.gz	fastq	705682040.0	5040586.0	EV07008.R1.fastq.gz	0:140	A:194506527;C:127442743;G:192893716;T:190818958;N:20096	140	194506527	127442743	192893716	190818958	20096	SRX23109803	SRS20064557	SRA1780298	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	0.0	0.0	1.0		140	T	under 1.2% mapping rate	illumina	nextseq	unknown	size_fractionation	nebnext	bulk	unknown	unknown	Austria	2024-01-06	Blastula	Embryo	Whole Organism	All anatomical structures
29775	29775	SRR27437495	SRX23109802	SRS20064556	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other	1K cell DM R3	strain:TLAB fish\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|dev stage:3 hpf\|collection date:2022\|geo loc name:Austria\|sex:mixed\|tissue:whole embryo\|treatment:DM\|BioSampleModel:Model organism or animal	tRAM seq of zebrafish: embryo 3 hpf DM rep3	EV07009	EV07009	RNA was extracted with Trizol tRNA isolated by size selection on denaturing polyacrylamide gel range 50 150 nt. The RNA was end repaired by alkaline deacylation and T4 PNK treatment three prime adapter ligated with T4 RNA ligase 2 reverse transcribed with TGIRT. The cDNA was circularized with CircLigase and amplified with KAPA HiFi polymerase using NEB Next indexed primers.	OTHER	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	NextSeq 500	SRP482074	EV07009.R1.fastq.gz	fastq	380716280.0	2719402.0	EV07009.R1.fastq.gz	0:140	A:95351632;C:89558330;G:115625953;T:80169603;N:10762	140	95351632	89558330	115625953	80169603	10762	SRX23109802	SRS20064556	SRA1780298	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	6e-05	1e-05	0.99991	0.75	140	T	under 1.2% mapping rate	illumina	nextseq	unknown	size_fractionation	nebnext	bulk	unknown	unknown	Austria	2024-01-06	Blastula	Embryo	Whole Organism	All anatomical structures
29776	29776	SRR27437496	SRX23109801	SRS20064555	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other	ovary DM R3	strain:TLAB fish\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|dev stage:adult\|collection date:2022\|geo loc name:Austria\|sex:female\|tissue:ovary\|treatment:DM\|BioSampleModel:Model organism or animal	tRAM seq of zebrafish: ovary DM rep3	EV04016	EV04016	RNA was extracted with Trizol tRNA isolated by size selection on denaturing polyacrylamide gel range 50 150 nt. The RNA was end repaired by alkaline deacylation and T4 PNK treatment three prime adapter ligated with T4 RNA ligase 2 reverse transcribed with TGIRT. The cDNA was circularized with CircLigase and amplified with KAPA HiFi polymerase using NEB Next indexed primers.	OTHER	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	NextSeq 500	SRP482074	EV04016.R1.fastq.gz	fastq	635752880.0	4541092.0	EV04016.R1.fastq.gz	0:140	A:160072248;C:143996869;G:189137330;T:142516059;N:30374	140	160072248	143996869	189137330	142516059	30374	SRX23109801	SRS20064555	SRA1780298	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	1e-05	0.0	0.99997	1.0	140	T	under 1.2% mapping rate	illumina	nextseq	unknown	size_fractionation	nebnext	bulk	unknown	unknown	Austria	2024-01-06	Adult	Adult	Gonad	Reproductive System
29777	29777	SRR27437497	SRX23109800	SRS20064554	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other	ovary mock R3	strain:TLAB fish\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|dev stage:adult\|collection date:2022\|geo loc name:Austria\|sex:female\|tissue:ovary\|treatment:mock\|BioSampleModel:Model organism or animal	tRAM seq of zebrafish: ovary mock rep3	EV04015	EV04015	RNA was extracted with Trizol tRNA isolated by size selection on denaturing polyacrylamide gel range 50 150 nt. The RNA was end repaired by alkaline deacylation and T4 PNK treatment three prime adapter ligated with T4 RNA ligase 2 reverse transcribed with TGIRT. The cDNA was circularized with CircLigase and amplified with KAPA HiFi polymerase using NEB Next indexed primers.	OTHER	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	NextSeq 500	SRP482074	EV04015.R1.fastq.gz	fastq	489700680.0	3497862.0	EV04015.R1.fastq.gz	0:140	A:126641754;C:126582886;G:130564204;T:105889815;N:22021	140	126641754	126582886	130564204	105889815	22021	SRX23109800	SRS20064554	SRA1780298	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	6e-05	0.0	0.99983	0.55555	140	T	under 1.2% mapping rate	illumina	nextseq	unknown	size_fractionation	nebnext	bulk	unknown	unknown	Austria	2024-01-06	Adult	Adult	Gonad	Reproductive System
29778	29778	SRR27435863	SRX23108233	SRS20063070	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other	1K cell mock R4	strain:TLAB fish\|isolate:NA\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|cultivar:NA\|ecotype:NA\|dev stage:3 hpf\|collection date:2022\|geo loc name:Austria\|sex:mixed\|tissue:whole embryo\|treatment:mock\|BioSampleModel:Model organism or animal	tRAM seq of zebrafish: embryo 3 hpf mock rep4	EV08010	EV08010	RNA was extracted with Trizol tRNA isolated by size selection on denaturing polyacrylamide gel range 50 150 nt. The RNA was end repaired by alkaline deacylation and T4 PNK treatment three prime adapter ligated with T4 RNA ligase 2 reverse transcribed with TGIRT. The cDNA was circularized with CircLigase and amplified with KAPA HiFi polymerase using NEB Next indexed primers.	OTHER	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	NextSeq 500	SRP482074	EV08010.R1.fastq.gz	fastq	678729520.0	4848068.0	EV08010.R1.fastq.gz	0:140	A:170672553;C:182320916;G:171865707;T:153824163;N:46181	140	170672553	182320916	171865707	153824163	46181	SRX23108233	SRS20063070	SRA1780265	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	0.0006	4e-05	0.99878	0.79069	140	T	under 1.2% mapping rate	illumina	nextseq	unknown	size_fractionation	nebnext	bulk	unknown	unknown	Austria	2024-01-05	Blastula	Embryo	Whole Organism	All anatomical structures
29779	29779	SRR27435864	SRX23108232	SRS20063068	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other	4 cell BS R4	strain:TLAB fish\|isolate:NA\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|cultivar:NA\|ecotype:NA\|dev stage:1 hpf\|collection date:2022\|geo loc name:Austria\|sex:mixed\|tissue:whole embryo\|treatment:BS\|BioSampleModel:Model organism or animal	tRAM seq of zebrafish: embryo 1 hpf BS rep4	EV08009	EV08009	RNA was extracted with Trizol tRNA isolated by size selection on denaturing polyacrylamide gel range 50 150 nt. The RNA was end repaired by alkaline deacylation and T4 PNK treatment three prime adapter ligated with T4 RNA ligase 2 reverse transcribed with TGIRT. The cDNA was circularized with CircLigase and amplified with KAPA HiFi polymerase using NEB Next indexed primers.	OTHER	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	NextSeq 500	SRP482074	EV08009.R1.fastq.gz	fastq	756964460.0	5406889.0	EV08009.R1.fastq.gz	0:140	A:191381054;C:111783194;G:185694475;T:268052883;N:52854	140	191381054	111783194	185694475	268052883	52854	SRX23108232	SRS20063068	SRA1780265	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	1e-05	0.0	0.99997	1.0	140	T	under 1.2% mapping rate	illumina	nextseq	unknown	size_fractionation	nebnext	bulk	unknown	unknown	Austria	2024-01-05	Cleavage	Embryo	Whole Organism	All anatomical structures
29780	29780	SRR27435865	SRX23108231	SRS20063069	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other	4 cell DM R4	strain:TLAB fish\|isolate:NA\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|cultivar:NA\|ecotype:NA\|dev stage:1 hpf\|collection date:2022\|geo loc name:Austria\|sex:mixed\|tissue:whole embryo\|treatment:DM\|BioSampleModel:Model organism or animal	tRAM seq of zebrafish: embryo 1 hpf DM rep4	EV08008	EV08008	RNA was extracted with Trizol tRNA isolated by size selection on denaturing polyacrylamide gel range 50 150 nt. The RNA was end repaired by alkaline deacylation and T4 PNK treatment three prime adapter ligated with T4 RNA ligase 2 reverse transcribed with TGIRT. The cDNA was circularized with CircLigase and amplified with KAPA HiFi polymerase using NEB Next indexed primers.	OTHER	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	NextSeq 500	SRP482074	EV08008.R1.fastq.gz	fastq	751794680.0	5369962.0	EV08008.R1.fastq.gz	0:140	A:194845808;C:197389162;G:194749636;T:164756481;N:53593	140	194845808	197389162	194749636	164756481	53593	SRX23108231	SRS20063069	SRA1780265	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	0.00124	0.00029	0.99853	0.77083	140	T	under 1.2% mapping rate	illumina	nextseq	unknown	size_fractionation	nebnext	bulk	unknown	unknown	Austria	2024-01-05	Cleavage	Embryo	Whole Organism	All anatomical structures
29781	29781	SRR27435866	SRX23108230	SRS20063066	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other	4 cell mock R4	strain:TLAB fish\|isolate:NA\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|cultivar:NA\|ecotype:NA\|dev stage:1 hpf\|collection date:2022\|geo loc name:Austria\|sex:mixed\|tissue:whole embryo\|treatment:mock\|BioSampleModel:Model organism or animal	tRAM seq of zebrafish: embryo 1 hpf mock rep4	EV08007	EV08007	RNA was extracted with Trizol tRNA isolated by size selection on denaturing polyacrylamide gel range 50 150 nt. The RNA was end repaired by alkaline deacylation and T4 PNK treatment three prime adapter ligated with T4 RNA ligase 2 reverse transcribed with TGIRT. The cDNA was circularized with CircLigase and amplified with KAPA HiFi polymerase using NEB Next indexed primers.	OTHER	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	NextSeq 500	SRP482074	EV08007.R1.fastq.gz	fastq	761961760.0	5442584.0	EV08007.R1.fastq.gz	0:140	A:194053323;C:191169414;G:194452160;T:182234253;N:52610	140	194053323	191169414	194452160	182234253	52610	SRX23108230	SRS20063066	SRA1780265	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	0.00242	0.00062	0.99803	0.81818	140	T	under 1.2% mapping rate	illumina	nextseq	unknown	size_fractionation	nebnext	bulk	unknown	unknown	Austria	2024-01-05	Cleavage	Embryo	Whole Organism	All anatomical structures
29782	29782	SRR27435867	SRX23108229	SRS20063067	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other	eggs BS R4	strain:TLAB fish\|isolate:NA\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|cultivar:NA\|ecotype:NA\|dev stage:activated eggs\|collection date:2022\|geo loc name:Austria\|sex:mixed\|tissue:activated eggs\|treatment:BS\|BioSampleModel:Model organism or animal	tRAM seq of zebrafish: eggs BS rep4	EV08006	EV08006	RNA was extracted with Trizol tRNA isolated by size selection on denaturing polyacrylamide gel range 50 150 nt. The RNA was end repaired by alkaline deacylation and T4 PNK treatment three prime adapter ligated with T4 RNA ligase 2 reverse transcribed with TGIRT. The cDNA was circularized with CircLigase and amplified with KAPA HiFi polymerase using NEB Next indexed primers.	OTHER	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	NextSeq 500	SRP482074	EV08006.R1.fastq.gz	fastq	501745580.0	3583897.0	EV08006.R1.fastq.gz	0:140	A:124242793;C:76040623;G:131428076;T:170000220;N:33868	140	124242793	76040623	131428076	170000220	33868	SRX23108229	SRS20063067	SRA1780265	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	4e-05	0.0	0.99993	0.66666	140	T	under 1.2% mapping rate	illumina	nextseq	unknown	size_fractionation	nebnext	bulk	unknown	unknown	Austria	2024-01-05	Undetermined	Embryo	Undetermined	Embryo Imprecise
29783	29783	SRR27435868	SRX23108228	SRS20063063	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other	eggs DM R4	strain:TLAB fish\|isolate:NA\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|cultivar:NA\|ecotype:NA\|dev stage:activated eggs\|collection date:2022\|geo loc name:Austria\|sex:mixed\|tissue:activated eggs\|treatment:DM\|BioSampleModel:Model organism or animal	tRAM seq of zebrafish: eggs DM rep4	EV08005	EV08005	RNA was extracted with Trizol tRNA isolated by size selection on denaturing polyacrylamide gel range 50 150 nt. The RNA was end repaired by alkaline deacylation and T4 PNK treatment three prime adapter ligated with T4 RNA ligase 2 reverse transcribed with TGIRT. The cDNA was circularized with CircLigase and amplified with KAPA HiFi polymerase using NEB Next indexed primers.	OTHER	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	NextSeq 500	SRP482074	EV08005.R1.fastq.gz	fastq	740147520.0	5286768.0	EV08005.R1.fastq.gz	0:140	A:192131338;C:198130943;G:182616631;T:167216834;N:51774	140	192131338	198130943	182616631	167216834	51774	SRX23108228	SRS20063063	SRA1780265	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	0.00052	8e-05	0.99922	0.92537	140	T	under 1.2% mapping rate	illumina	nextseq	unknown	size_fractionation	nebnext	bulk	unknown	unknown	Austria	2024-01-05	Undetermined	Embryo	Undetermined	Embryo Imprecise
29784	29784	SRR27435869	SRX23108227	SRS20063065	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other	eggs mock R4	strain:TLAB fish\|isolate:NA\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|cultivar:NA\|ecotype:NA\|dev stage:activated eggs\|collection date:2022\|geo loc name:Austria\|sex:mixed\|tissue:activated eggs\|treatment:mock\|BioSampleModel:Model organism or animal	tRAM seq of zebrafish: eggs mock rep4	EV08004	EV08004	RNA was extracted with Trizol tRNA isolated by size selection on denaturing polyacrylamide gel range 50 150 nt. The RNA was end repaired by alkaline deacylation and T4 PNK treatment three prime adapter ligated with T4 RNA ligase 2 reverse transcribed with TGIRT. The cDNA was circularized with CircLigase and amplified with KAPA HiFi polymerase using NEB Next indexed primers.	OTHER	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	NextSeq 500	SRP482074	EV08004.R1.fastq.gz	fastq	761663140.0	5440451.0	EV08004.R1.fastq.gz	0:140	A:194684966;C:192212418;G:196372829;T:178340184;N:52743	140	194684966	192212418	196372829	178340184	52743	SRX23108227	SRS20063065	SRA1780265	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	0.00151	0.00037	0.99884	0.82352	140	T	under 1.2% mapping rate	illumina	nextseq	unknown	size_fractionation	nebnext	bulk	unknown	unknown	Austria	2024-01-05	Undetermined	Embryo	Undetermined	Embryo Imprecise
29785	29785	SRR27435870	SRX23108226	SRS20063064	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other	24h BS R4	strain:TLAB fish\|isolate:NA\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|cultivar:NA\|ecotype:NA\|dev stage:24 hpf\|collection date:2022\|geo loc name:Austria\|sex:mixed\|tissue:whole embryo\|treatment:BS\|BioSampleModel:Model organism or animal	tRAM seq of zebrafish: embryo 24 hpf BS rep4	EV08021	EV08021	RNA was extracted with Trizol tRNA isolated by size selection on denaturing polyacrylamide gel range 50 150 nt. The RNA was end repaired by alkaline deacylation and T4 PNK treatment three prime adapter ligated with T4 RNA ligase 2 reverse transcribed with TGIRT. The cDNA was circularized with CircLigase and amplified with KAPA HiFi polymerase using NEB Next indexed primers.	OTHER	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	NextSeq 500	SRP482074	EV08021.R1.fastq.gz	fastq	747571860.0	5339799.0	EV08021.R1.fastq.gz	0:140	A:185666613;C:121868156;G:181153824;T:258830310;N:52957	140	185666613	121868156	181153824	258830310	52957	SRX23108226	SRS20063064	SRA1780265	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	0.0	0.0	1.0		140	T	under 1.2% mapping rate	illumina	nextseq	unknown	size_fractionation	nebnext	bulk	unknown	unknown	Austria	2024-01-05	Pharyngula	Embryo	Whole Organism	All anatomical structures
29786	29786	SRR27435871	SRX23108225	SRS20063062	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other	ovary BS R4	strain:TLAB fish\|isolate:NA\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|cultivar:NA\|ecotype:NA\|dev stage:adult\|collection date:2022\|geo loc name:Austria\|sex:female\|tissue:ovary\|treatment:BS\|BioSampleModel:Model organism or animal	tRAM seq of zebrafish: ovary BS rep4	EV08003	EV08003	RNA was extracted with Trizol tRNA isolated by size selection on denaturing polyacrylamide gel range 50 150 nt. The RNA was end repaired by alkaline deacylation and T4 PNK treatment three prime adapter ligated with T4 RNA ligase 2 reverse transcribed with TGIRT. The cDNA was circularized with CircLigase and amplified with KAPA HiFi polymerase using NEB Next indexed primers.	OTHER	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	NextSeq 500	SRP482074	EV08003.R1.fastq.gz	fastq	571689580.0	4083497.0	EV08003.R1.fastq.gz	0:140	A:141414131;C:88722455;G:138790445;T:202723075;N:39474	140	141414131	88722455	138790445	202723075	39474	SRX23108225	SRS20063062	SRA1780265	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	3e-05	0.0	0.99991	0.75	140	T	under 1.2% mapping rate	illumina	nextseq	unknown	size_fractionation	nebnext	bulk	unknown	unknown	Austria	2024-01-05	Adult	Adult	Gonad	Reproductive System
29787	29787	SRR27435872	SRX23108224	SRS20063061	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other	24h DM R4	strain:TLAB fish\|isolate:NA\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|cultivar:NA\|ecotype:NA\|dev stage:24 hpf\|collection date:2022\|geo loc name:Austria\|sex:mixed\|tissue:whole embryo\|treatment:DM\|BioSampleModel:Model organism or animal	tRAM seq of zebrafish: embryo 24 hpf DM rep4	EV08020	EV08020	RNA was extracted with Trizol tRNA isolated by size selection on denaturing polyacrylamide gel range 50 150 nt. The RNA was end repaired by alkaline deacylation and T4 PNK treatment three prime adapter ligated with T4 RNA ligase 2 reverse transcribed with TGIRT. The cDNA was circularized with CircLigase and amplified with KAPA HiFi polymerase using NEB Next indexed primers.	OTHER	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	NextSeq 500	SRP482074	EV08020.R1.fastq.gz	fastq	775090400.0	5536360.0	EV08020.R1.fastq.gz	0:140	A:198131068;C:205114604;G:198783890;T:173006366;N:54472	140	198131068	205114604	198783890	173006366	54472	SRX23108224	SRS20063061	SRA1780265	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	0.00056	4e-05	0.9989	0.71052	140	T	under 1.2% mapping rate	illumina	nextseq	unknown	size_fractionation	nebnext	bulk	unknown	unknown	Austria	2024-01-05	Pharyngula	Embryo	Whole Organism	All anatomical structures
29788	29788	SRR27435873	SRX23108223	SRS20063060	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other	24h mock R4	strain:TLAB fish\|isolate:NA\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|cultivar:NA\|ecotype:NA\|dev stage:24 hpf\|collection date:2022\|geo loc name:Austria\|sex:mixed\|tissue:whole embryo\|treatment:mock\|BioSampleModel:Model organism or animal	tRAM seq of zebrafish: embryo 24 hpf mock rep4	EV08019	EV08019	RNA was extracted with Trizol tRNA isolated by size selection on denaturing polyacrylamide gel range 50 150 nt. The RNA was end repaired by alkaline deacylation and T4 PNK treatment three prime adapter ligated with T4 RNA ligase 2 reverse transcribed with TGIRT. The cDNA was circularized with CircLigase and amplified with KAPA HiFi polymerase using NEB Next indexed primers.	OTHER	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	NextSeq 500	SRP482074	EV08019.R1.fastq.gz	fastq	763233240.0	5451666.0	EV08019.R1.fastq.gz	0:140	A:189362337;C:199268270;G:198509945;T:176040551;N:52137	140	189362337	199268270	198509945	176040551	52137	SRX23108223	SRS20063060	SRA1780265	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	0.00036	6e-05	0.99939	0.85365	140	T	under 1.2% mapping rate	illumina	nextseq	unknown	size_fractionation	nebnext	bulk	unknown	unknown	Austria	2024-01-05	Pharyngula	Embryo	Whole Organism	All anatomical structures
29789	29789	SRR27435874	SRX23108222	SRS20063057	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other	Bud BS R4	strain:TLAB fish\|isolate:NA\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|cultivar:NA\|ecotype:NA\|dev stage:10 hpf\|collection date:2022\|geo loc name:Austria\|sex:mixed\|tissue:whole embryo\|treatment:BS\|BioSampleModel:Model organism or animal	tRAM seq of zebrafish: embryo 10 hpf BS rep4	EV08018	EV08018	RNA was extracted with Trizol tRNA isolated by size selection on denaturing polyacrylamide gel range 50 150 nt. The RNA was end repaired by alkaline deacylation and T4 PNK treatment three prime adapter ligated with T4 RNA ligase 2 reverse transcribed with TGIRT. The cDNA was circularized with CircLigase and amplified with KAPA HiFi polymerase using NEB Next indexed primers.	OTHER	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	NextSeq 500	SRP482074	EV08018.R1.fastq.gz	fastq	809203080.0	5780022.0	EV08018.R1.fastq.gz	0:140	A:209714496;C:130623600;G:197912909;T:270895413;N:56662	140	209714496	130623600	197912909	270895413	56662	SRX23108222	SRS20063057	SRA1780265	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	0.0	0.0	1.0		140	T	under 1.2% mapping rate	illumina	nextseq	unknown	size_fractionation	nebnext	bulk	unknown	unknown	Austria	2024-01-05	Gastrula	Embryo	Whole Organism	All anatomical structures
29790	29790	SRR27435875	SRX23108221	SRS20063059	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other	Bud DM R4	strain:TLAB fish\|isolate:NA\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|cultivar:NA\|ecotype:NA\|dev stage:10 hpf\|collection date:2022\|geo loc name:Austria\|sex:mixed\|tissue:whole embryo\|treatment:DM\|BioSampleModel:Model organism or animal	tRAM seq of zebrafish: embryo 10 hpf DM rep4	EV08017	EV08017	RNA was extracted with Trizol tRNA isolated by size selection on denaturing polyacrylamide gel range 50 150 nt. The RNA was end repaired by alkaline deacylation and T4 PNK treatment three prime adapter ligated with T4 RNA ligase 2 reverse transcribed with TGIRT. The cDNA was circularized with CircLigase and amplified with KAPA HiFi polymerase using NEB Next indexed primers.	OTHER	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	NextSeq 500	SRP482074	EV08017.R1.fastq.gz	fastq	722137500.0	5158125.0	EV08017.R1.fastq.gz	0:140	A:176408094;C:195907583;G:188487109;T:161283055;N:51659	140	176408094	195907583	188487109	161283055	51659	SRX23108221	SRS20063059	SRA1780265	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	0.00053	3e-05	0.999	0.70422	140	T	under 1.2% mapping rate	illumina	nextseq	unknown	size_fractionation	nebnext	bulk	unknown	unknown	Austria	2024-01-05	Gastrula	Embryo	Whole Organism	All anatomical structures
29791	29791	SRR27435876	SRX23108220	SRS20063058	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other	Bud mock R4	strain:TLAB fish\|isolate:NA\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|cultivar:NA\|ecotype:NA\|dev stage:10 hpf\|collection date:2022\|geo loc name:Austria\|sex:mixed\|tissue:whole embryo\|treatment:mock\|BioSampleModel:Model organism or animal	tRAM seq of zebrafish: embryo 10 hpf mock rep4	EV08016	EV08016	RNA was extracted with Trizol tRNA isolated by size selection on denaturing polyacrylamide gel range 50 150 nt. The RNA was end repaired by alkaline deacylation and T4 PNK treatment three prime adapter ligated with T4 RNA ligase 2 reverse transcribed with TGIRT. The cDNA was circularized with CircLigase and amplified with KAPA HiFi polymerase using NEB Next indexed primers.	OTHER	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	NextSeq 500	SRP482074	EV08016.R1.fastq.gz	fastq	827605660.0	5911469.0	EV08016.R1.fastq.gz	0:140	A:204173663;C:224596562;G:206999037;T:191779555;N:56843	140	204173663	224596562	206999037	191779555	56843	SRX23108220	SRS20063058	SRA1780265	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	0.00037	2e-05	0.99908	0.7037	140	T	under 1.2% mapping rate	illumina	nextseq	unknown	size_fractionation	nebnext	bulk	unknown	unknown	Austria	2024-01-05	Gastrula	Embryo	Whole Organism	All anatomical structures
29792	29792	SRR27435877	SRX23108219	SRS20063056	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other	Dome BS R4	strain:TLAB fish\|isolate:NA\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|cultivar:NA\|ecotype:NA\|dev stage:5 hpf\|collection date:2022\|geo loc name:Austria\|sex:mixed\|tissue:whole embryo\|treatment:BS\|BioSampleModel:Model organism or animal	tRAM seq of zebrafish: embryo 5 hpf BS rep4	EV08015	EV08015	RNA was extracted with Trizol tRNA isolated by size selection on denaturing polyacrylamide gel range 50 150 nt. The RNA was end repaired by alkaline deacylation and T4 PNK treatment three prime adapter ligated with T4 RNA ligase 2 reverse transcribed with TGIRT. The cDNA was circularized with CircLigase and amplified with KAPA HiFi polymerase using NEB Next indexed primers.	OTHER	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	NextSeq 500	SRP482074	EV08015.R1.fastq.gz	fastq	804598200.0	5747130.0	EV08015.R1.fastq.gz	0:140	A:215467427;C:134937180;G:189531758;T:264604493;N:57342	140	215467427	134937180	189531758	264604493	57342	SRX23108219	SRS20063056	SRA1780265	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	2e-05	0.0	0.99995	1.0	140	T	under 1.2% mapping rate	illumina	nextseq	unknown	size_fractionation	nebnext	bulk	unknown	unknown	Austria	2024-01-05	Blastula	Embryo	Whole Organism	All anatomical structures
29793	29793	SRR27435878	SRX23108218	SRS20063055	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other	Dome DM R4	strain:TLAB fish\|isolate:NA\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|cultivar:NA\|ecotype:NA\|dev stage:5 hpf\|collection date:2022\|geo loc name:Austria\|sex:mixed\|tissue:whole embryo\|treatment:DM\|BioSampleModel:Model organism or animal	tRAM seq of zebrafish: embryo 5 hpf DM rep4	EV08014	EV08014	RNA was extracted with Trizol tRNA isolated by size selection on denaturing polyacrylamide gel range 50 150 nt. The RNA was end repaired by alkaline deacylation and T4 PNK treatment three prime adapter ligated with T4 RNA ligase 2 reverse transcribed with TGIRT. The cDNA was circularized with CircLigase and amplified with KAPA HiFi polymerase using NEB Next indexed primers.	OTHER	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	NextSeq 500	SRP482074	EV08014.R1.fastq.gz	fastq	662443740.0	4731741.0	EV08014.R1.fastq.gz	0:140	A:164941700;C:167025964;G:177255084;T:153175163;N:45829	140	164941700	167025964	177255084	153175163	45829	SRX23108218	SRS20063055	SRA1780265	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	0.00069	0.0001	0.9992	0.83076	140	T	under 1.2% mapping rate	illumina	nextseq	unknown	size_fractionation	nebnext	bulk	unknown	unknown	Austria	2024-01-05	Blastula	Embryo	Whole Organism	All anatomical structures
29794	29794	SRR27435879	SRX23108217	SRS20063052	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other	Dome mock R4	strain:TLAB fish\|isolate:NA\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|cultivar:NA\|ecotype:NA\|dev stage:5 hpf\|collection date:2022\|geo loc name:Austria\|sex:mixed\|tissue:whole embryo\|treatment:mock\|BioSampleModel:Model organism or animal	tRAM seq of zebrafish: embryo 5 hpf mock rep4	EV08013	EV08013	RNA was extracted with Trizol tRNA isolated by size selection on denaturing polyacrylamide gel range 50 150 nt. The RNA was end repaired by alkaline deacylation and T4 PNK treatment three prime adapter ligated with T4 RNA ligase 2 reverse transcribed with TGIRT. The cDNA was circularized with CircLigase and amplified with KAPA HiFi polymerase using NEB Next indexed primers.	OTHER	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	NextSeq 500	SRP482074	EV08013.R1.fastq.gz	fastq	794760540.0	5676861.0	EV08013.R1.fastq.gz	0:140	A:197361776;C:210230329;G:205734036;T:181380205;N:54194	140	197361776	210230329	205734036	181380205	54194	SRX23108217	SRS20063052	SRA1780265	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	0.00066	9e-05	0.99894	0.78378	140	T	under 1.2% mapping rate	illumina	nextseq	unknown	size_fractionation	nebnext	bulk	unknown	unknown	Austria	2024-01-05	Blastula	Embryo	Whole Organism	All anatomical structures
29795	29795	SRR27435880	SRX23108216	SRS20063054	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other	1K cell BS R4	strain:TLAB fish\|isolate:NA\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|cultivar:NA\|ecotype:NA\|dev stage:3 hpf\|collection date:2022\|geo loc name:Austria\|sex:mixed\|tissue:whole embryo\|treatment:BS\|BioSampleModel:Model organism or animal	tRAM seq of zebrafish: embryo 3 hpf BS rep4	EV08012	EV08012	RNA was extracted with Trizol tRNA isolated by size selection on denaturing polyacrylamide gel range 50 150 nt. The RNA was end repaired by alkaline deacylation and T4 PNK treatment three prime adapter ligated with T4 RNA ligase 2 reverse transcribed with TGIRT. The cDNA was circularized with CircLigase and amplified with KAPA HiFi polymerase using NEB Next indexed primers.	OTHER	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	NextSeq 500	SRP482074	EV08012.R1.fastq.gz	fastq	722593200.0	5161380.0	EV08012.R1.fastq.gz	0:140	A:188475497;C:119550806;G:173208825;T:241306038;N:52034	140	188475497	119550806	173208825	241306038	52034	SRX23108216	SRS20063054	SRA1780265	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	0.0	0.0	1.0		140	T	under 1.2% mapping rate	illumina	nextseq	unknown	size_fractionation	nebnext	bulk	unknown	unknown	Austria	2024-01-05	Blastula	Embryo	Whole Organism	All anatomical structures
29796	29796	SRR27435881	SRX23108215	SRS20063053	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other	1K cell DM R4	strain:TLAB fish\|isolate:NA\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|cultivar:NA\|ecotype:NA\|dev stage:3 hpf\|collection date:2022\|geo loc name:Austria\|sex:mixed\|tissue:whole embryo\|treatment:DM\|BioSampleModel:Model organism or animal	tRAM seq of zebrafish: embryo 3 hpf DM rep4	EV08011	EV08011	RNA was extracted with Trizol tRNA isolated by size selection on denaturing polyacrylamide gel range 50 150 nt. The RNA was end repaired by alkaline deacylation and T4 PNK treatment three prime adapter ligated with T4 RNA ligase 2 reverse transcribed with TGIRT. The cDNA was circularized with CircLigase and amplified with KAPA HiFi polymerase using NEB Next indexed primers.	OTHER	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	NextSeq 500	SRP482074	EV08011.R1.fastq.gz	fastq	753783380.0	5384167.0	EV08011.R1.fastq.gz	0:140	A:190029713;C:193734250;G:194752855;T:175212145;N:54417	140	190029713	193734250	194752855	175212145	54417	SRX23108215	SRS20063053	SRA1780265	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	0.00076	5e-05	0.99859	0.70873	140	T	under 1.2% mapping rate	illumina	nextseq	unknown	size_fractionation	nebnext	bulk	unknown	unknown	Austria	2024-01-05	Blastula	Embryo	Whole Organism	All anatomical structures
29797	29797	SRR27435882	SRX23108214	SRS20063050	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other	ovary DM R4	strain:TLAB fish\|isolate:NA\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|cultivar:NA\|ecotype:NA\|dev stage:adult\|collection date:2022\|geo loc name:Austria\|sex:female\|tissue:ovary\|treatment:DM\|BioSampleModel:Model organism or animal	tRAM seq of zebrafish: ovary DM rep4	EV08002	EV08002	RNA was extracted with Trizol tRNA isolated by size selection on denaturing polyacrylamide gel range 50 150 nt. The RNA was end repaired by alkaline deacylation and T4 PNK treatment three prime adapter ligated with T4 RNA ligase 2 reverse transcribed with TGIRT. The cDNA was circularized with CircLigase and amplified with KAPA HiFi polymerase using NEB Next indexed primers.	OTHER	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	NextSeq 500	SRP482074	EV08002.R1.fastq.gz	fastq	668593800.0	4775670.0	EV08002.R1.fastq.gz	0:140	A:164584224;C:175789134;G:175538168;T:152637106;N:45168	140	164584224	175789134	175538168	152637106	45168	SRX23108214	SRS20063050	SRA1780265	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	0.00525	2e-05	0.99192	0.63501	140	T	under 1.2% mapping rate	illumina	nextseq	unknown	size_fractionation	nebnext	bulk	unknown	unknown	Austria	2024-01-05	Adult	Adult	Gonad	Reproductive System
29798	29798	SRR27435883	SRX23108213	SRS20063051	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other	ovary mock R4	strain:TLAB fish\|isolate:NA\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|cultivar:NA\|ecotype:NA\|dev stage:adult\|collection date:2022\|geo loc name:Austria\|sex:female\|tissue:ovary\|treatment:mock\|BioSampleModel:Model organism or animal	tRAM seq of zebrafish: ovary mock rep4	EV08001	EV08001	RNA was extracted with Trizol tRNA isolated by size selection on denaturing polyacrylamide gel range 50 150 nt. The RNA was end repaired by alkaline deacylation and T4 PNK treatment three prime adapter ligated with T4 RNA ligase 2 reverse transcribed with TGIRT. The cDNA was circularized with CircLigase and amplified with KAPA HiFi polymerase using NEB Next indexed primers.	OTHER	TRANSCRIPTOMIC	size fractionation	SINGLE	ILLUMINA	NextSeq 500	SRP482074	EV08001.R1.fastq.gz	fastq	753247460.0	5380339.0	EV08001.R1.fastq.gz	0:140	A:183862675;C:196453674;G:197604061;T:175275086;N:51964	140	183862675	196453674	197604061	175275086	51964	SRX23108213	SRS20063051	SRA1780265	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	0.00754	4e-05	0.98957	0.51048	140	T	under 1.2% mapping rate	illumina	nextseq	unknown	size_fractionation	nebnext	bulk	unknown	unknown	Austria	2024-01-05	Adult	Adult	Gonad	Reproductive System

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;