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run_metadata

44 rows where experiment.library_layout = "SINGLE", experiment.library_selection = "PolyA" and tissue_curation = "Head"

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tissue_curation_coarse 1

tissue_curation 1

  • Head · 44 ✖

technology 1

experiment.platform 1

experiment.library_strategy 1

experiment.library_source 1

experiment.library_selection 1

  • PolyA · 44 ✖

experiment.library_layout 1

  • SINGLE · 44 ✖

devstage_curation_coarse 1

devstage_curation 1

Link rowid ▼ run.accession experiment.accession sample.accession study.accession bioproject study.title study.alias study.type study.abstract study.attributes study.PMIDs sample.description sample.title sample.alias sample.centername sample.attributes GEOsample.title GEOsample.dataprocessing GEOsample.source GEOsample.treatmentprotocol GEOsample.extractprotocol GEOsample.growthprotocol GEOsample.characteristics GEOsample.accession experiment.title experiment.alias experiment.library_name experiment.design_description experiment.library_construction_protocol experiment.attributes experiment.library_strategy experiment.library_source experiment.library_selection experiment.library_layout experiment.platform experiment.instrument_model experiment.spot_descriptor experiment.study_ref run.title run.attributes run.filename run.semantic_name run.total_bases run.total_spots run.alias run.read_lengths run.base_counts run.r1_length run.r2_length run.r3_length run.r4_length run.Acount run.Ccount run.Gcount run.Tcount run.Ncount run.experiment run.pool_member submission.accession submission.srasource submission.bioprojectsource seqdetective.n_mates seqdetective.mapping_rate.mate1 seqdetective.mapping_rate.mate2 seqdetective.nofeature_rate.mate1 seqdetective.nofeature_rate.mate2 seqdetective.sparsity.mate1 seqdetective.sparsity.mate2 seqdetective.pos_strand_rate.mate1 seqdetective.pos_strand_rate.mate2 seqdetective.readlen.mate1 seqdetective.readlen.mate2 seqdetective.judgement.mate1 seqdetective.judgement.mate2 seqdetective.judgement.reason platform_family instrument_generation read_bias selection_class prep_kit sc_or_bulk tech_class technology tech_variant submission.bioprojectsource.country earliest_date devstage_curation devstage_curation_coarse tissue_curation tissue_curation_coarse
10407 10407 ERR9077202 ERX8620336 ERS10857224 ERP135966 PRJEB51339 RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E-MTAB-11505 Transcriptome Analysis Transcriptome analysis of the heads of 6 dpf sv2a / sv2a+/ and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a / zebrafish larvae. ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21   Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Sv2aWT5S8 SAMEA13254181 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254181|INSDC center alias:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aWT5S8|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/+|individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aWT5S8|sex:not available|strain:AB                 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E MTAB 11505:Sv2aWT5S8 s Sv2aWT5S8 s RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Experimental Factor: genotype:sv2a+/+ RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA NextSeq 500   ERP135966 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21 sv2aWT5S8L001-1.fastq.gz fastq 652046291.0 8633105.0 E MTAB 11505:sv2aWT5S8L001 0:75.53 1:0 A:159570243;C:156420495;G:154853315;T:181073030;N:129208 75 0     159570243 156420495 154853315 181073030 129208 ERX8620336 ERS10857224 ERA9644804 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive 1 0.95245   0.1148   0.65756   0.47011   75   B   usable mapping rate illumina nextseq unknown poly_a trueseq bulk unknown unknown   Belgium 2022-04-21 Larval Larval Head Nervous System
10408 10408 ERR9077203 ERX8620336 ERS10857224 ERP135966 PRJEB51339 RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E-MTAB-11505 Transcriptome Analysis Transcriptome analysis of the heads of 6 dpf sv2a / sv2a+/ and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a / zebrafish larvae. ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21   Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Sv2aWT5S8 SAMEA13254181 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254181|INSDC center alias:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aWT5S8|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/+|individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aWT5S8|sex:not available|strain:AB                 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E MTAB 11505:Sv2aWT5S8 s Sv2aWT5S8 s RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Experimental Factor: genotype:sv2a+/+ RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA NextSeq 500   ERP135966 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21 sv2aWT5S8L002-1.fastq.gz fastq 653840525.0 8656886.0 E MTAB 11505:sv2aWT5S8L002 0:75.53 1:0 A:159902458;C:156826842;G:155509070;T:181475104;N:127051 75 0     159902458 156826842 155509070 181475104 127051 ERX8620336 ERS10857224 ERA9644804 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive 1 0.95226   0.1156   0.65792   0.4667   76   B   usable mapping rate illumina nextseq unknown poly_a trueseq bulk unknown unknown   Belgium 2022-04-21 Larval Larval Head Nervous System
10409 10409 ERR9077204 ERX8620336 ERS10857224 ERP135966 PRJEB51339 RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E-MTAB-11505 Transcriptome Analysis Transcriptome analysis of the heads of 6 dpf sv2a / sv2a+/ and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a / zebrafish larvae. ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21   Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Sv2aWT5S8 SAMEA13254181 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254181|INSDC center alias:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aWT5S8|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/+|individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aWT5S8|sex:not available|strain:AB                 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E MTAB 11505:Sv2aWT5S8 s Sv2aWT5S8 s RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Experimental Factor: genotype:sv2a+/+ RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA NextSeq 500   ERP135966 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21 sv2aWT5S8L003-1.fastq.gz fastq 659584196.0 8732885.0 E MTAB 11505:sv2aWT5S8L003 0:75.53 1:0 A:161257146;C:158299734;G:156793443;T:183128972;N:104901 75 0     161257146 158299734 156793443 183128972 104901 ERX8620336 ERS10857224 ERA9644804 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive 1 0.95298   0.11485   0.65798   0.46853   76   B   usable mapping rate illumina nextseq unknown poly_a trueseq bulk unknown unknown   Belgium 2022-04-21 Larval Larval Head Nervous System
10410 10410 ERR9077205 ERX8620336 ERS10857224 ERP135966 PRJEB51339 RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E-MTAB-11505 Transcriptome Analysis Transcriptome analysis of the heads of 6 dpf sv2a / sv2a+/ and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a / zebrafish larvae. ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21   Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Sv2aWT5S8 SAMEA13254181 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254181|INSDC center alias:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aWT5S8|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/+|individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aWT5S8|sex:not available|strain:AB                 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E MTAB 11505:Sv2aWT5S8 s Sv2aWT5S8 s RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Experimental Factor: genotype:sv2a+/+ RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA NextSeq 500   ERP135966 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21 sv2aWT5S8L004-1.fastq.gz fastq 666627746.0 8826123.0 E MTAB 11505:sv2aWT5S8L004 0:75.53 1:0 A:162975131;C:159937258;G:158506242;T:185106149;N:102966 75 0     162975131 159937258 158506242 185106149 102966 ERX8620336 ERS10857224 ERA9644804 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive 1 0.9531   0.11425   0.65736   0.47309   76   B   usable mapping rate illumina nextseq unknown poly_a trueseq bulk unknown unknown   Belgium 2022-04-21 Larval Larval Head Nervous System
10411 10411 ERR9077198 ERX8620335 ERS10857223 ERP135966 PRJEB51339 RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E-MTAB-11505 Transcriptome Analysis Transcriptome analysis of the heads of 6 dpf sv2a / sv2a+/ and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a / zebrafish larvae. ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21   Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Sv2aWT4S7 SAMEA13254180 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254180|INSDC center alias:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aWT4S7|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/+|individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aWT4S7|sex:not available|strain:AB                 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E MTAB 11505:Sv2aWT4S7 s Sv2aWT4S7 s RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Experimental Factor: genotype:sv2a+/+ RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA NextSeq 500   ERP135966 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21 sv2aWT4S7L001-1.fastq.gz fastq 683751258.0 9051795.0 E MTAB 11505:sv2aWT4S7L001 0:75.54 1:0 A:162889923;C:167127644;G:164779384;T:188822907;N:131400 75 0     162889923 167127644 164779384 188822907 131400 ERX8620335 ERS10857223 ERA9644804 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive 1 0.95739   0.0959   0.6606   0.46826   75   B   usable mapping rate illumina nextseq unknown poly_a trueseq bulk unknown unknown   Belgium 2022-04-21 Larval Larval Head Nervous System
10412 10412 ERR9077199 ERX8620335 ERS10857223 ERP135966 PRJEB51339 RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E-MTAB-11505 Transcriptome Analysis Transcriptome analysis of the heads of 6 dpf sv2a / sv2a+/ and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a / zebrafish larvae. ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21   Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Sv2aWT4S7 SAMEA13254180 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254180|INSDC center alias:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aWT4S7|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/+|individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aWT4S7|sex:not available|strain:AB                 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E MTAB 11505:Sv2aWT4S7 s Sv2aWT4S7 s RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Experimental Factor: genotype:sv2a+/+ RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA NextSeq 500   ERP135966 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21 sv2aWT4S7L002-1.fastq.gz fastq 684187711.0 9057591.0 E MTAB 11505:sv2aWT4S7L002 0:75.54 1:0 A:162923879;C:167246213;G:165071145;T:188818774;N:127700 75 0     162923879 167246213 165071145 188818774 127700 ERX8620335 ERS10857223 ERA9644804 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive 1 0.95724   0.0959   0.66036   0.47026   76   B   usable mapping rate illumina nextseq unknown poly_a trueseq bulk unknown unknown   Belgium 2022-04-21 Larval Larval Head Nervous System
10413 10413 ERR9077200 ERX8620335 ERS10857223 ERP135966 PRJEB51339 RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E-MTAB-11505 Transcriptome Analysis Transcriptome analysis of the heads of 6 dpf sv2a / sv2a+/ and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a / zebrafish larvae. ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21   Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Sv2aWT4S7 SAMEA13254180 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254180|INSDC center alias:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aWT4S7|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/+|individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aWT4S7|sex:not available|strain:AB                 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E MTAB 11505:Sv2aWT4S7 s Sv2aWT4S7 s RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Experimental Factor: genotype:sv2a+/+ RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA NextSeq 500   ERP135966 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21 sv2aWT4S7L003-1.fastq.gz fastq 692320213.0 9165132.0 E MTAB 11505:sv2aWT4S7L003 0:75.54 1:0 A:164772792;C:169329920;G:166952052;T:191164422;N:101027 75 0     164772792 169329920 166952052 191164422 101027 ERX8620335 ERS10857223 ERA9644804 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive 1 0.95786   0.09701   0.66131   0.47564   76   B   usable mapping rate illumina nextseq unknown poly_a trueseq bulk unknown unknown   Belgium 2022-04-21 Larval Larval Head Nervous System
10414 10414 ERR9077201 ERX8620335 ERS10857223 ERP135966 PRJEB51339 RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E-MTAB-11505 Transcriptome Analysis Transcriptome analysis of the heads of 6 dpf sv2a / sv2a+/ and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a / zebrafish larvae. ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21   Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Sv2aWT4S7 SAMEA13254180 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254180|INSDC center alias:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aWT4S7|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/+|individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aWT4S7|sex:not available|strain:AB                 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E MTAB 11505:Sv2aWT4S7 s Sv2aWT4S7 s RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Experimental Factor: genotype:sv2a+/+ RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA NextSeq 500   ERP135966 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21 sv2aWT4S7L004-1.fastq.gz fastq 697047881.0 9227702.0 E MTAB 11505:sv2aWT4S7L004 0:75.54 1:0 A:165881728;C:170388393;G:168105900;T:192572068;N:99792 75 0     165881728 170388393 168105900 192572068 99792 ERX8620335 ERS10857223 ERA9644804 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive 1 0.9584   0.09565   0.66115   0.46967   76   B   usable mapping rate illumina nextseq unknown poly_a trueseq bulk unknown unknown   Belgium 2022-04-21 Larval Larval Head Nervous System
10415 10415 ERR9077194 ERX8620334 ERS10857222 ERP135966 PRJEB51339 RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E-MTAB-11505 Transcriptome Analysis Transcriptome analysis of the heads of 6 dpf sv2a / sv2a+/ and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a / zebrafish larvae. ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21   Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Sv2aWT3S2 SAMEA13254179 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254179|INSDC center alias:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aWT3S2|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/+|individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aWT3S2|sex:not available|strain:AB                 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E MTAB 11505:Sv2aWT3S2 s Sv2aWT3S2 s RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Experimental Factor: genotype:sv2a+/+ RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA NextSeq 500   ERP135966 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21 sv2aWT3S2L001-1.fastq.gz fastq 723508205.0 9579193.0 E MTAB 11505:sv2aWT3S2L001 0:75.53 1:0 A:177832489;C:174193135;G:169978598;T:201360184;N:143799 75 0     177832489 174193135 169978598 201360184 143799 ERX8620334 ERS10857222 ERA9644804 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive 1 0.95218   0.11732   0.65916   0.47955   71   B   usable mapping rate illumina nextseq unknown poly_a trueseq bulk unknown unknown   Belgium 2022-04-21 Larval Larval Head Nervous System
10416 10416 ERR9077195 ERX8620334 ERS10857222 ERP135966 PRJEB51339 RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E-MTAB-11505 Transcriptome Analysis Transcriptome analysis of the heads of 6 dpf sv2a / sv2a+/ and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a / zebrafish larvae. ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21   Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Sv2aWT3S2 SAMEA13254179 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254179|INSDC center alias:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aWT3S2|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/+|individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aWT3S2|sex:not available|strain:AB                 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E MTAB 11505:Sv2aWT3S2 s Sv2aWT3S2 s RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Experimental Factor: genotype:sv2a+/+ RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA NextSeq 500   ERP135966 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21 sv2aWT3S2L002-1.fastq.gz fastq 726190024.0 9614674.0 E MTAB 11505:sv2aWT3S2L002 0:75.53 1:0 A:178408224;C:174776263;G:170820745;T:202047224;N:137568 75 0     178408224 174776263 170820745 202047224 137568 ERX8620334 ERS10857222 ERA9644804 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive 1 0.95093   0.11567   0.65865   0.46877   75   B   usable mapping rate illumina nextseq unknown poly_a trueseq bulk unknown unknown   Belgium 2022-04-21 Larval Larval Head Nervous System
10417 10417 ERR9077196 ERX8620334 ERS10857222 ERP135966 PRJEB51339 RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E-MTAB-11505 Transcriptome Analysis Transcriptome analysis of the heads of 6 dpf sv2a / sv2a+/ and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a / zebrafish larvae. ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21   Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Sv2aWT3S2 SAMEA13254179 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254179|INSDC center alias:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aWT3S2|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/+|individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aWT3S2|sex:not available|strain:AB                 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E MTAB 11505:Sv2aWT3S2 s Sv2aWT3S2 s RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Experimental Factor: genotype:sv2a+/+ RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA NextSeq 500   ERP135966 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21 sv2aWT3S2L003-1.fastq.gz fastq 735499955.0 9737845.0 E MTAB 11505:sv2aWT3S2L003 0:75.53 1:0 A:180659962;C:177141362;G:172905323;T:204678308;N:115000 75 0     180659962 177141362 172905323 204678308 115000 ERX8620334 ERS10857222 ERA9644804 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive 1 0.95233   0.11614   0.65898   0.47114   76   B   usable mapping rate illumina nextseq unknown poly_a trueseq bulk unknown unknown   Belgium 2022-04-21 Larval Larval Head Nervous System
10418 10418 ERR9077197 ERX8620334 ERS10857222 ERP135966 PRJEB51339 RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E-MTAB-11505 Transcriptome Analysis Transcriptome analysis of the heads of 6 dpf sv2a / sv2a+/ and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a / zebrafish larvae. ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21   Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Sv2aWT3S2 SAMEA13254179 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254179|INSDC center alias:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aWT3S2|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/+|individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aWT3S2|sex:not available|strain:AB                 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E MTAB 11505:Sv2aWT3S2 s Sv2aWT3S2 s RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Experimental Factor: genotype:sv2a+/+ RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA NextSeq 500   ERP135966 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21 sv2aWT3S2L004-1.fastq.gz fastq 745285512.0 9867337.0 E MTAB 11505:sv2aWT3S2L004 0:75.53 1:0 A:183067487;C:179408382;G:175250814;T:207445912;N:112917 75 0     183067487 179408382 175250814 207445912 112917 ERX8620334 ERS10857222 ERA9644804 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive 1 0.95245   0.11655   0.65857   0.47087   76   B   usable mapping rate illumina nextseq unknown poly_a trueseq bulk unknown unknown   Belgium 2022-04-21 Larval Larval Head Nervous System
10419 10419 ERR9077190 ERX8620333 ERS10857221 ERP135966 PRJEB51339 RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E-MTAB-11505 Transcriptome Analysis Transcriptome analysis of the heads of 6 dpf sv2a / sv2a+/ and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a / zebrafish larvae. ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21   Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Sv2aWT1S1 SAMEA13254178 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254178|INSDC center alias:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aWT1S1|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/+|individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aWT1S1|sex:not available|strain:AB                 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E MTAB 11505:Sv2aWT1S1 s Sv2aWT1S1 s RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Experimental Factor: genotype:sv2a+/+ RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA NextSeq 500   ERP135966 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21 sv2aWT1S1L001-1.fastq.gz fastq 647414748.0 8571883.0 E MTAB 11505:sv2aWT1S1L001 0:75.53 1:0 A:154593859;C:160498057;G:153809612;T:178389112;N:124108 75 0     154593859 160498057 153809612 178389112 124108 ERX8620333 ERS10857221 ERA9644804 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive 1 0.95955   0.08686   0.65955   0.47406   76   B   usable mapping rate illumina nextseq unknown poly_a trueseq bulk unknown unknown   Belgium 2022-04-21 Larval Larval Head Nervous System
10420 10420 ERR9077191 ERX8620333 ERS10857221 ERP135966 PRJEB51339 RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E-MTAB-11505 Transcriptome Analysis Transcriptome analysis of the heads of 6 dpf sv2a / sv2a+/ and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a / zebrafish larvae. ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21   Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Sv2aWT1S1 SAMEA13254178 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254178|INSDC center alias:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aWT1S1|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/+|individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aWT1S1|sex:not available|strain:AB                 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E MTAB 11505:Sv2aWT1S1 s Sv2aWT1S1 s RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Experimental Factor: genotype:sv2a+/+ RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA NextSeq 500   ERP135966 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21 sv2aWT1S1L002-1.fastq.gz fastq 646657758.0 8561861.0 E MTAB 11505:sv2aWT1S1L002 0:75.53 1:0 A:154348044;C:160294625;G:153804048;T:178092212;N:118829 75 0     154348044 160294625 153804048 178092212 118829 ERX8620333 ERS10857221 ERA9644804 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive 1 0.95942   0.08632   0.65991   0.47539   76   B   usable mapping rate illumina nextseq unknown poly_a trueseq bulk unknown unknown   Belgium 2022-04-21 Larval Larval Head Nervous System
10421 10421 ERR9077192 ERX8620333 ERS10857221 ERP135966 PRJEB51339 RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E-MTAB-11505 Transcriptome Analysis Transcriptome analysis of the heads of 6 dpf sv2a / sv2a+/ and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a / zebrafish larvae. ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21   Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Sv2aWT1S1 SAMEA13254178 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254178|INSDC center alias:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aWT1S1|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/+|individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aWT1S1|sex:not available|strain:AB                 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E MTAB 11505:Sv2aWT1S1 s Sv2aWT1S1 s RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Experimental Factor: genotype:sv2a+/+ RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA NextSeq 500   ERP135966 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21 sv2aWT1S1L003-1.fastq.gz fastq 654781451.0 8669333.0 E MTAB 11505:sv2aWT1S1L003 0:75.53 1:0 A:156252744;C:162396721;G:155681450;T:180352911;N:97625 75 0     156252744 162396721 155681450 180352911 97625 ERX8620333 ERS10857221 ERA9644804 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive 1 0.95972   0.08498   0.66137   0.47457   75   B   usable mapping rate illumina nextseq unknown poly_a trueseq bulk unknown unknown   Belgium 2022-04-21 Larval Larval Head Nervous System
10422 10422 ERR9077193 ERX8620333 ERS10857221 ERP135966 PRJEB51339 RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E-MTAB-11505 Transcriptome Analysis Transcriptome analysis of the heads of 6 dpf sv2a / sv2a+/ and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a / zebrafish larvae. ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21   Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Sv2aWT1S1 SAMEA13254178 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254178|INSDC center alias:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aWT1S1|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/+|individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aWT1S1|sex:not available|strain:AB                 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E MTAB 11505:Sv2aWT1S1 s Sv2aWT1S1 s RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Experimental Factor: genotype:sv2a+/+ RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA NextSeq 500   ERP135966 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21 sv2aWT1S1L004-1.fastq.gz fastq 659716937.0 8734618.0 E MTAB 11505:sv2aWT1S1L004 0:75.53 1:0 A:157367211;C:163585842;G:156911139;T:181757809;N:94936 75 0     157367211 163585842 156911139 181757809 94936 ERX8620333 ERS10857221 ERA9644804 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive 1 0.95985   0.08585   0.65857   0.47349   76   B   usable mapping rate illumina nextseq unknown poly_a trueseq bulk unknown unknown   Belgium 2022-04-21 Larval Larval Head Nervous System
10423 10423 ERR9077186 ERX8620332 ERS10857220 ERP135966 PRJEB51339 RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E-MTAB-11505 Transcriptome Analysis Transcriptome analysis of the heads of 6 dpf sv2a / sv2a+/ and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a / zebrafish larvae. ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21   Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Sv2aHO6S12 SAMEA13254177 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254177|INSDC center alias:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aHO6S12|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a / |individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aHO6S12|sex:not available|strain:AB                 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E MTAB 11505:Sv2aHO6S12 s Sv2aHO6S12 s RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Experimental Factor: genotype:sv2a / RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA NextSeq 500   ERP135966 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21 sv2aHO6S12L001-1.fastq.gz fastq 675018261.0 8937958.0 E MTAB 11505:sv2aHO6S12L001 0:75.52 1:0 A:166564263;C:160539328;G:160003980;T:187773509;N:137181 75 0     166564263 160539328 160003980 187773509 137181 ERX8620332 ERS10857220 ERA9644804 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive 1 0.94964   0.13009   0.65413   0.47079   76   B   usable mapping rate illumina nextseq unknown poly_a trueseq bulk unknown unknown   Belgium 2022-04-21 Larval Larval Head Nervous System
10424 10424 ERR9077187 ERX8620332 ERS10857220 ERP135966 PRJEB51339 RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E-MTAB-11505 Transcriptome Analysis Transcriptome analysis of the heads of 6 dpf sv2a / sv2a+/ and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a / zebrafish larvae. ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21   Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Sv2aHO6S12 SAMEA13254177 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254177|INSDC center alias:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aHO6S12|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a / |individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aHO6S12|sex:not available|strain:AB                 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E MTAB 11505:Sv2aHO6S12 s Sv2aHO6S12 s RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Experimental Factor: genotype:sv2a / RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA NextSeq 500   ERP135966 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21 sv2aHO6S12L002-1.fastq.gz fastq 672995667.0 8911161.0 E MTAB 11505:sv2aHO6S12L002 0:75.52 1:0 A:165990319;C:160039398;G:159722501;T:187108781;N:134668 75 0     165990319 160039398 159722501 187108781 134668 ERX8620332 ERS10857220 ERA9644804 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive 1 0.94837   0.13029   0.65744   0.47959   76   B   usable mapping rate illumina nextseq unknown poly_a trueseq bulk unknown unknown   Belgium 2022-04-21 Larval Larval Head Nervous System
10425 10425 ERR9077188 ERX8620332 ERS10857220 ERP135966 PRJEB51339 RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E-MTAB-11505 Transcriptome Analysis Transcriptome analysis of the heads of 6 dpf sv2a / sv2a+/ and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a / zebrafish larvae. ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21   Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Sv2aHO6S12 SAMEA13254177 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254177|INSDC center alias:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aHO6S12|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a / |individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aHO6S12|sex:not available|strain:AB                 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E MTAB 11505:Sv2aHO6S12 s Sv2aHO6S12 s RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Experimental Factor: genotype:sv2a / RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA NextSeq 500   ERP135966 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21 sv2aHO6S12L003-1.fastq.gz fastq 683276767.0 9047147.0 E MTAB 11505:sv2aHO6S12L003 0:75.52 1:0 A:168501690;C:162583852;G:162063190;T:190018001;N:110034 75 0     168501690 162583852 162063190 190018001 110034 ERX8620332 ERS10857220 ERA9644804 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive 1 0.94983   0.13248   0.6565   0.47977   76   B   usable mapping rate illumina nextseq unknown poly_a trueseq bulk unknown unknown   Belgium 2022-04-21 Larval Larval Head Nervous System
10426 10426 ERR9077189 ERX8620332 ERS10857220 ERP135966 PRJEB51339 RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E-MTAB-11505 Transcriptome Analysis Transcriptome analysis of the heads of 6 dpf sv2a / sv2a+/ and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a / zebrafish larvae. ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21   Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Sv2aHO6S12 SAMEA13254177 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254177|INSDC center alias:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aHO6S12|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a / |individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aHO6S12|sex:not available|strain:AB                 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E MTAB 11505:Sv2aHO6S12 s Sv2aHO6S12 s RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Experimental Factor: genotype:sv2a / RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA NextSeq 500   ERP135966 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21 sv2aHO6S12L004-1.fastq.gz fastq 686469910.0 9089431.0 E MTAB 11505:sv2aHO6S12L004 0:75.52 1:0 A:169287189;C:163276361;G:162844724;T:190954218;N:107418 75 0     169287189 163276361 162844724 190954218 107418 ERX8620332 ERS10857220 ERA9644804 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive 1 0.95061   0.13029   0.65389   0.48044   76   B   usable mapping rate illumina nextseq unknown poly_a trueseq bulk unknown unknown   Belgium 2022-04-21 Larval Larval Head Nervous System
10427 10427 ERR9077182 ERX8620331 ERS10857219 ERP135966 PRJEB51339 RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E-MTAB-11505 Transcriptome Analysis Transcriptome analysis of the heads of 6 dpf sv2a / sv2a+/ and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a / zebrafish larvae. ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21   Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Sv2aHO4S10 SAMEA13254176 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254176|INSDC center alias:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aHO4S10|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a / |individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aHO4S10|sex:not available|strain:AB                 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E MTAB 11505:Sv2aHO4S10 s Sv2aHO4S10 s RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Experimental Factor: genotype:sv2a / RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA NextSeq 500   ERP135966 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21 sv2aHO4S10L001-1.fastq.gz fastq 713858966.0 9452474.0 E MTAB 11505:sv2aHO4S10L001 0:75.52 1:0 A:177913695;C:169425317;G:167540012;T:198835532;N:144410 75 0     177913695 169425317 167540012 198835532 144410 ERX8620331 ERS10857219 ERA9644804 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive 1 0.94848   0.12981   0.6636   0.47772   76   B   usable mapping rate illumina nextseq unknown poly_a trueseq bulk unknown unknown   Belgium 2022-04-21 Larval Larval Head Nervous System
10428 10428 ERR9077183 ERX8620331 ERS10857219 ERP135966 PRJEB51339 RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E-MTAB-11505 Transcriptome Analysis Transcriptome analysis of the heads of 6 dpf sv2a / sv2a+/ and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a / zebrafish larvae. ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21   Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Sv2aHO4S10 SAMEA13254176 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254176|INSDC center alias:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aHO4S10|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a / |individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aHO4S10|sex:not available|strain:AB                 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E MTAB 11505:Sv2aHO4S10 s Sv2aHO4S10 s RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Experimental Factor: genotype:sv2a / RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA NextSeq 500   ERP135966 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21 sv2aHO4S10L002-1.fastq.gz fastq 717619593.0 9502301.0 E MTAB 11505:sv2aHO4S10L002 0:75.52 1:0 A:178830542;C:170284720;G:168594514;T:199773382;N:136435 75 0     178830542 170284720 168594514 199773382 136435 ERX8620331 ERS10857219 ERA9644804 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive 1 0.94812   0.12868   0.6645   0.47281   75   B   usable mapping rate illumina nextseq unknown poly_a trueseq bulk unknown unknown   Belgium 2022-04-21 Larval Larval Head Nervous System
10429 10429 ERR9077184 ERX8620331 ERS10857219 ERP135966 PRJEB51339 RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E-MTAB-11505 Transcriptome Analysis Transcriptome analysis of the heads of 6 dpf sv2a / sv2a+/ and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a / zebrafish larvae. ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21   Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Sv2aHO4S10 SAMEA13254176 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254176|INSDC center alias:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aHO4S10|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a / |individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aHO4S10|sex:not available|strain:AB                 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E MTAB 11505:Sv2aHO4S10 s Sv2aHO4S10 s RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Experimental Factor: genotype:sv2a / RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA NextSeq 500   ERP135966 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21 sv2aHO4S10L003-1.fastq.gz fastq 727263626.0 9629858.0 E MTAB 11505:sv2aHO4S10L003 0:75.52 1:0 A:181201278;C:172619520;G:170780953;T:202550397;N:111478 75 0     181201278 172619520 170780953 202550397 111478 ERX8620331 ERS10857219 ERA9644804 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive 1 0.94768   0.12827   0.66596   0.47332   76   B   usable mapping rate illumina nextseq unknown poly_a trueseq bulk unknown unknown   Belgium 2022-04-21 Larval Larval Head Nervous System
10430 10430 ERR9077185 ERX8620331 ERS10857219 ERP135966 PRJEB51339 RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E-MTAB-11505 Transcriptome Analysis Transcriptome analysis of the heads of 6 dpf sv2a / sv2a+/ and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a / zebrafish larvae. ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21   Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Sv2aHO4S10 SAMEA13254176 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254176|INSDC center alias:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aHO4S10|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a / |individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aHO4S10|sex:not available|strain:AB                 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E MTAB 11505:Sv2aHO4S10 s Sv2aHO4S10 s RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Experimental Factor: genotype:sv2a / RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA NextSeq 500   ERP135966 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21 sv2aHO4S10L004-1.fastq.gz fastq 736595278.0 9753337.0 E MTAB 11505:sv2aHO4S10L004 0:75.52 1:0 A:183510872;C:174806534;G:173027794;T:205140640;N:109438 75 0     183510872 174806534 173027794 205140640 109438 ERX8620331 ERS10857219 ERA9644804 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive 1 0.94925   0.12904   0.66417   0.47297   76   B   usable mapping rate illumina nextseq unknown poly_a trueseq bulk unknown unknown   Belgium 2022-04-21 Larval Larval Head Nervous System
10431 10431 ERR9077178 ERX8620330 ERS10857218 ERP135966 PRJEB51339 RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E-MTAB-11505 Transcriptome Analysis Transcriptome analysis of the heads of 6 dpf sv2a / sv2a+/ and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a / zebrafish larvae. ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21   Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Sv2aHO3S6 SAMEA13254175 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254175|INSDC center alias:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aHO3S6|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a / |individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aHO3S6|sex:not available|strain:AB                 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E MTAB 11505:Sv2aHO3S6 s Sv2aHO3S6 s RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Experimental Factor: genotype:sv2a / RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA NextSeq 500   ERP135966 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21 sv2aHO3S6L001-1.fastq.gz fastq 710756305.0 9410862.0 E MTAB 11505:sv2aHO3S6L001 0:75.53 1:0 A:175585613;C:170261120;G:166658917;T:198106388;N:144267 75 0     175585613 170261120 166658917 198106388 144267 ERX8620330 ERS10857218 ERA9644804 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive 1 0.94827   0.14002   0.66785   0.474   75   B   usable mapping rate illumina nextseq unknown poly_a trueseq bulk unknown unknown   Belgium 2022-04-21 Larval Larval Head Nervous System
10432 10432 ERR9077179 ERX8620330 ERS10857218 ERP135966 PRJEB51339 RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E-MTAB-11505 Transcriptome Analysis Transcriptome analysis of the heads of 6 dpf sv2a / sv2a+/ and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a / zebrafish larvae. ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21   Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Sv2aHO3S6 SAMEA13254175 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254175|INSDC center alias:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aHO3S6|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a / |individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aHO3S6|sex:not available|strain:AB                 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E MTAB 11505:Sv2aHO3S6 s Sv2aHO3S6 s RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Experimental Factor: genotype:sv2a / RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA NextSeq 500   ERP135966 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21 sv2aHO3S6L002-1.fastq.gz fastq 715330324.0 9471415.0 E MTAB 11505:sv2aHO3S6L002 0:75.53 1:0 A:176679775;C:171311031;G:167903237;T:199299483;N:136798 75 0     176679775 171311031 167903237 199299483 136798 ERX8620330 ERS10857218 ERA9644804 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive 1 0.9469   0.13915   0.67004   0.47654   75   B   usable mapping rate illumina nextseq unknown poly_a trueseq bulk unknown unknown   Belgium 2022-04-21 Larval Larval Head Nervous System
10433 10433 ERR9077180 ERX8620330 ERS10857218 ERP135966 PRJEB51339 RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E-MTAB-11505 Transcriptome Analysis Transcriptome analysis of the heads of 6 dpf sv2a / sv2a+/ and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a / zebrafish larvae. ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21   Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Sv2aHO3S6 SAMEA13254175 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254175|INSDC center alias:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aHO3S6|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a / |individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aHO3S6|sex:not available|strain:AB                 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E MTAB 11505:Sv2aHO3S6 s Sv2aHO3S6 s RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Experimental Factor: genotype:sv2a / RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA NextSeq 500   ERP135966 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21 sv2aHO3S6L003-1.fastq.gz fastq 722810562.0 9570364.0 E MTAB 11505:sv2aHO3S6L003 0:75.53 1:0 A:178442845;C:173192786;G:169595085;T:201465522;N:114324 75 0     178442845 173192786 169595085 201465522 114324 ERX8620330 ERS10857218 ERA9644804 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive 1 0.94918   0.13979   0.66902   0.47572   75   B   usable mapping rate illumina nextseq unknown poly_a trueseq bulk unknown unknown   Belgium 2022-04-21 Larval Larval Head Nervous System
10434 10434 ERR9077181 ERX8620330 ERS10857218 ERP135966 PRJEB51339 RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E-MTAB-11505 Transcriptome Analysis Transcriptome analysis of the heads of 6 dpf sv2a / sv2a+/ and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a / zebrafish larvae. ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21   Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Sv2aHO3S6 SAMEA13254175 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254175|INSDC center alias:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aHO3S6|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a / |individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aHO3S6|sex:not available|strain:AB                 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E MTAB 11505:Sv2aHO3S6 s Sv2aHO3S6 s RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Experimental Factor: genotype:sv2a / RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA NextSeq 500   ERP135966 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21 sv2aHO3S6L004-1.fastq.gz fastq 732990507.0 9705054.0 E MTAB 11505:sv2aHO3S6L004 0:75.53 1:0 A:180951130;C:175567778;G:172037542;T:204323488;N:110569 75 0     180951130 175567778 172037542 204323488 110569 ERX8620330 ERS10857218 ERA9644804 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive 1 0.94812   0.13893   0.67085   0.47502   75   B   usable mapping rate illumina nextseq unknown poly_a trueseq bulk unknown unknown   Belgium 2022-04-21 Larval Larval Head Nervous System
10435 10435 ERR9077174 ERX8620329 ERS10857217 ERP135966 PRJEB51339 RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E-MTAB-11505 Transcriptome Analysis Transcriptome analysis of the heads of 6 dpf sv2a / sv2a+/ and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a / zebrafish larvae. ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21   Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Sv2aHET7S9 SAMEA13254174 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254174|INSDC center alias:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aHET7S9|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/ |individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aHET7S9|sex:not available|strain:AB                 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E MTAB 11505:Sv2aHET7S9 s Sv2aHET7S9 s RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Experimental Factor: genotype:sv2a+/ RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA NextSeq 500   ERP135966 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21 sv2aHET7S9L001-1.fastq.gz fastq 773209432.0 10238087.0 E MTAB 11505:sv2aHET7S9L001 0:75.52 1:0 A:191962953;C:184699376;G:180774008;T:215620759;N:152336 75 0     191962953 184699376 180774008 215620759 152336 ERX8620329 ERS10857217 ERA9644804 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive 1 0.95047   0.12485   0.65705   0.4775   76   B   usable mapping rate illumina nextseq unknown poly_a trueseq bulk unknown unknown   Belgium 2022-04-21 Larval Larval Head Nervous System
10436 10436 ERR9077175 ERX8620329 ERS10857217 ERP135966 PRJEB51339 RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E-MTAB-11505 Transcriptome Analysis Transcriptome analysis of the heads of 6 dpf sv2a / sv2a+/ and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a / zebrafish larvae. ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21   Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Sv2aHET7S9 SAMEA13254174 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254174|INSDC center alias:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aHET7S9|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/ |individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aHET7S9|sex:not available|strain:AB                 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E MTAB 11505:Sv2aHET7S9 s Sv2aHET7S9 s RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Experimental Factor: genotype:sv2a+/ RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA NextSeq 500   ERP135966 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21 sv2aHET7S9L002-1.fastq.gz fastq 773106152.0 10236677.0 E MTAB 11505:sv2aHET7S9L002 0:75.52 1:0 A:191812833;C:184676419;G:180997547;T:215473732;N:145621 75 0     191812833 184676419 180997547 215473732 145621 ERX8620329 ERS10857217 ERA9644804 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive 1 0.95016   0.12464   0.65482   0.47419   76   B   usable mapping rate illumina nextseq unknown poly_a trueseq bulk unknown unknown   Belgium 2022-04-21 Larval Larval Head Nervous System
10437 10437 ERR9077176 ERX8620329 ERS10857217 ERP135966 PRJEB51339 RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E-MTAB-11505 Transcriptome Analysis Transcriptome analysis of the heads of 6 dpf sv2a / sv2a+/ and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a / zebrafish larvae. ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21   Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Sv2aHET7S9 SAMEA13254174 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254174|INSDC center alias:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aHET7S9|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/ |individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aHET7S9|sex:not available|strain:AB                 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E MTAB 11505:Sv2aHET7S9 s Sv2aHET7S9 s RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Experimental Factor: genotype:sv2a+/ RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA NextSeq 500   ERP135966 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21 sv2aHET7S9L003-1.fastq.gz fastq 783061051.0 10368445.0 E MTAB 11505:sv2aHET7S9L003 0:75.52 1:0 A:194289152;C:187108364;G:183177036;T:218370500;N:115999 75 0     194289152 187108364 183177036 218370500 115999 ERX8620329 ERS10857217 ERA9644804 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive 1 0.95172   0.12488   0.65445   0.48157   76   B   usable mapping rate illumina nextseq unknown poly_a trueseq bulk unknown unknown   Belgium 2022-04-21 Larval Larval Head Nervous System
10438 10438 ERR9077177 ERX8620329 ERS10857217 ERP135966 PRJEB51339 RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E-MTAB-11505 Transcriptome Analysis Transcriptome analysis of the heads of 6 dpf sv2a / sv2a+/ and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a / zebrafish larvae. ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21   Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Sv2aHET7S9 SAMEA13254174 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254174|INSDC center alias:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aHET7S9|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/ |individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aHET7S9|sex:not available|strain:AB                 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E MTAB 11505:Sv2aHET7S9 s Sv2aHET7S9 s RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Experimental Factor: genotype:sv2a+/ RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA NextSeq 500   ERP135966 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21 sv2aHET7S9L004-1.fastq.gz fastq 790150025.0 10462214.0 E MTAB 11505:sv2aHET7S9L004 0:75.52 1:0 A:196056500;C:188746833;G:184927588;T:220305922;N:113182 75 0     196056500 188746833 184927588 220305922 113182 ERX8620329 ERS10857217 ERA9644804 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive 1 0.95285   0.12478   0.65551   0.4763   76   B   usable mapping rate illumina nextseq unknown poly_a trueseq bulk unknown unknown   Belgium 2022-04-21 Larval Larval Head Nervous System
10439 10439 ERR9077170 ERX8620328 ERS10857216 ERP135966 PRJEB51339 RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E-MTAB-11505 Transcriptome Analysis Transcriptome analysis of the heads of 6 dpf sv2a / sv2a+/ and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a / zebrafish larvae. ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21   Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Sv2aHET4S5 SAMEA13254173 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254173|INSDC center alias:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aHET4S5|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/ |individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aHET4S5|sex:not available|strain:AB                 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E MTAB 11505:Sv2aHET4S5 s Sv2aHET4S5 s RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Experimental Factor: genotype:sv2a+/ RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA NextSeq 500   ERP135966 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21 sv2aHET4S5L001-1.fastq.gz fastq 685650097.0 9076481.0 E MTAB 11505:sv2aHET4S5L001 0:75.54 1:0 A:161812875;C:167870520;G:166985310;T:188850530;N:130862 75 0     161812875 167870520 166985310 188850530 130862 ERX8620328 ERS10857216 ERA9644804 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive 1 0.95733   0.09974   0.65691   0.47392   76   B   usable mapping rate illumina nextseq unknown poly_a trueseq bulk unknown unknown   Belgium 2022-04-21 Larval Larval Head Nervous System
10440 10440 ERR9077171 ERX8620328 ERS10857216 ERP135966 PRJEB51339 RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E-MTAB-11505 Transcriptome Analysis Transcriptome analysis of the heads of 6 dpf sv2a / sv2a+/ and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a / zebrafish larvae. ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21   Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Sv2aHET4S5 SAMEA13254173 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254173|INSDC center alias:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aHET4S5|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/ |individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aHET4S5|sex:not available|strain:AB                 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E MTAB 11505:Sv2aHET4S5 s Sv2aHET4S5 s RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Experimental Factor: genotype:sv2a+/ RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA NextSeq 500   ERP135966 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21 sv2aHET4S5L002-1.fastq.gz fastq 684402241.0 9059974.0 E MTAB 11505:sv2aHET4S5L002 0:75.54 1:0 A:161493428;C:167520248;G:166882054;T:188383816;N:122695 75 0     161493428 167520248 166882054 188383816 122695 ERX8620328 ERS10857216 ERA9644804 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive 1 0.95537   0.09915   0.65719   0.48261   76   B   usable mapping rate illumina nextseq unknown poly_a trueseq bulk unknown unknown   Belgium 2022-04-21 Larval Larval Head Nervous System
10441 10441 ERR9077172 ERX8620328 ERS10857216 ERP135966 PRJEB51339 RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E-MTAB-11505 Transcriptome Analysis Transcriptome analysis of the heads of 6 dpf sv2a / sv2a+/ and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a / zebrafish larvae. ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21   Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Sv2aHET4S5 SAMEA13254173 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254173|INSDC center alias:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aHET4S5|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/ |individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aHET4S5|sex:not available|strain:AB                 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E MTAB 11505:Sv2aHET4S5 s Sv2aHET4S5 s RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Experimental Factor: genotype:sv2a+/ RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA NextSeq 500   ERP135966 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21 sv2aHET4S5L003-1.fastq.gz fastq 694099126.0 9188245.0 E MTAB 11505:sv2aHET4S5L003 0:75.54 1:0 A:163727378;C:169989210;G:169143224;T:191137588;N:101726 75 0     163727378 169989210 169143224 191137588 101726 ERX8620328 ERS10857216 ERA9644804 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive 1 0.95629   0.09861   0.65705   0.47187   75   B   usable mapping rate illumina nextseq unknown poly_a trueseq bulk unknown unknown   Belgium 2022-04-21 Larval Larval Head Nervous System
10442 10442 ERR9077173 ERX8620328 ERS10857216 ERP135966 PRJEB51339 RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E-MTAB-11505 Transcriptome Analysis Transcriptome analysis of the heads of 6 dpf sv2a / sv2a+/ and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a / zebrafish larvae. ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21   Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Sv2aHET4S5 SAMEA13254173 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254173|INSDC center alias:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aHET4S5|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/ |individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aHET4S5|sex:not available|strain:AB                 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E MTAB 11505:Sv2aHET4S5 s Sv2aHET4S5 s RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Experimental Factor: genotype:sv2a+/ RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA NextSeq 500   ERP135966 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21 sv2aHET4S5L004-1.fastq.gz fastq 698753836.0 9249820.0 E MTAB 11505:sv2aHET4S5L004 0:75.54 1:0 A:164809473;C:171057633;G:170349692;T:192441413;N:95625 75 0     164809473 171057633 170349692 192441413 95625 ERX8620328 ERS10857216 ERA9644804 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive 1 0.95613   0.09885   0.65798   0.47227   76   B   usable mapping rate illumina nextseq unknown poly_a trueseq bulk unknown unknown   Belgium 2022-04-21 Larval Larval Head Nervous System
10443 10443 ERR9077166 ERX8620327 ERS10857215 ERP135966 PRJEB51339 RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E-MTAB-11505 Transcriptome Analysis Transcriptome analysis of the heads of 6 dpf sv2a / sv2a+/ and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a / zebrafish larvae. ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21   Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Sv2aHET3S4 SAMEA13254172 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254172|INSDC center alias:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aHET3S4|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/ |individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aHET3S4|sex:not available|strain:AB                 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E MTAB 11505:Sv2aHET3S4 s Sv2aHET3S4 s RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Experimental Factor: genotype:sv2a+/ RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA NextSeq 500   ERP135966 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21 sv2aHET3S4L001-1.fastq.gz fastq 691298605.0 9151512.0 E MTAB 11505:sv2aHET3S4L001 0:75.54 1:0 A:164743919;C:170752099;G:164763621;T:190912044;N:126922 75 0     164743919 170752099 164763621 190912044 126922 ERX8620327 ERS10857215 ERA9644804 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive 1 0.95684   0.09604   0.6603   0.47285   76   B   usable mapping rate illumina nextseq unknown poly_a trueseq bulk unknown unknown   Belgium 2022-04-21 Larval Larval Head Nervous System
10444 10444 ERR9077167 ERX8620327 ERS10857215 ERP135966 PRJEB51339 RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E-MTAB-11505 Transcriptome Analysis Transcriptome analysis of the heads of 6 dpf sv2a / sv2a+/ and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a / zebrafish larvae. ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21   Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Sv2aHET3S4 SAMEA13254172 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254172|INSDC center alias:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aHET3S4|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/ |individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aHET3S4|sex:not available|strain:AB                 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E MTAB 11505:Sv2aHET3S4 s Sv2aHET3S4 s RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Experimental Factor: genotype:sv2a+/ RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA NextSeq 500   ERP135966 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21 sv2aHET3S4L002-1.fastq.gz fastq 694080975.0 9188259.0 E MTAB 11505:sv2aHET3S4L002 0:75.54 1:0 A:165336810;C:171397273;G:165632321;T:191591872;N:122699 75 0     165336810 171397273 165632321 191591872 122699 ERX8620327 ERS10857215 ERA9644804 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive 1 0.95612   0.09694   0.65993   0.46918   76   B   usable mapping rate illumina nextseq unknown poly_a trueseq bulk unknown unknown   Belgium 2022-04-21 Larval Larval Head Nervous System
10445 10445 ERR9077168 ERX8620327 ERS10857215 ERP135966 PRJEB51339 RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E-MTAB-11505 Transcriptome Analysis Transcriptome analysis of the heads of 6 dpf sv2a / sv2a+/ and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a / zebrafish larvae. ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21   Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Sv2aHET3S4 SAMEA13254172 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254172|INSDC center alias:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aHET3S4|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/ |individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aHET3S4|sex:not available|strain:AB                 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E MTAB 11505:Sv2aHET3S4 s Sv2aHET3S4 s RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Experimental Factor: genotype:sv2a+/ RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA NextSeq 500   ERP135966 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21 sv2aHET3S4L003-1.fastq.gz fastq 703689889.0 9315387.0 E MTAB 11505:sv2aHET3S4L003 0:75.54 1:0 A:167575230;C:173881977;G:167845574;T:194289403;N:97705 75 0     167575230 173881977 167845574 194289403 97705 ERX8620327 ERS10857215 ERA9644804 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive 1 0.9577   0.09608   0.66042   0.47022   74   B   usable mapping rate illumina nextseq unknown poly_a trueseq bulk unknown unknown   Belgium 2022-04-21 Larval Larval Head Nervous System
10446 10446 ERR9077169 ERX8620327 ERS10857215 ERP135966 PRJEB51339 RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E-MTAB-11505 Transcriptome Analysis Transcriptome analysis of the heads of 6 dpf sv2a / sv2a+/ and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a / zebrafish larvae. ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21   Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Sv2aHET3S4 SAMEA13254172 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254172|INSDC center alias:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aHET3S4|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/ |individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aHET3S4|sex:not available|strain:AB                 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E MTAB 11505:Sv2aHET3S4 s Sv2aHET3S4 s RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Experimental Factor: genotype:sv2a+/ RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA NextSeq 500   ERP135966 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21 sv2aHET3S4L004-1.fastq.gz fastq 712116538.0 9426961.0 E MTAB 11505:sv2aHET3S4L004 0:75.54 1:0 A:169598596;C:175885948;G:169866534;T:196669400;N:96060 75 0     169598596 175885948 169866534 196669400 96060 ERX8620327 ERS10857215 ERA9644804 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive 1 0.95734   0.09716   0.66054   0.47257   75   B   usable mapping rate illumina nextseq unknown poly_a trueseq bulk unknown unknown   Belgium 2022-04-21 Larval Larval Head Nervous System
10447 10447 ERR9077162 ERX8620326 ERS10857214 ERP135966 PRJEB51339 RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E-MTAB-11505 Transcriptome Analysis Transcriptome analysis of the heads of 6 dpf sv2a / sv2a+/ and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a / zebrafish larvae. ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21   Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Sv2aHET2S3 SAMEA13254171 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254171|INSDC center alias:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aHET2S3|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/ |individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aHET2S3|sex:not available|strain:AB                 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E MTAB 11505:Sv2aHET2S3 s Sv2aHET2S3 s RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Experimental Factor: genotype:sv2a+/ RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA NextSeq 500   ERP135966 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21 sv2aHET2S3L001-1.fastq.gz fastq 733440522.0 9709422.0 E MTAB 11505:sv2aHET2S3L001 0:75.54 1:0 A:173670000;C:181175353;G:175392793;T:203059256;N:143120 75 0     173670000 181175353 175392793 203059256 143120 ERX8620326 ERS10857214 ERA9644804 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive 1 0.95885   0.08758   0.65393   0.47249   76   B   usable mapping rate illumina nextseq unknown poly_a trueseq bulk unknown unknown   Belgium 2022-04-21 Larval Larval Head Nervous System
10448 10448 ERR9077163 ERX8620326 ERS10857214 ERP135966 PRJEB51339 RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E-MTAB-11505 Transcriptome Analysis Transcriptome analysis of the heads of 6 dpf sv2a / sv2a+/ and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a / zebrafish larvae. ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21   Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Sv2aHET2S3 SAMEA13254171 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254171|INSDC center alias:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aHET2S3|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/ |individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aHET2S3|sex:not available|strain:AB                 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E MTAB 11505:Sv2aHET2S3 s Sv2aHET2S3 s RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Experimental Factor: genotype:sv2a+/ RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA NextSeq 500   ERP135966 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21 sv2aHET2S3L002-1.fastq.gz fastq 732121929.0 9691967.0 E MTAB 11505:sv2aHET2S3L002 0:75.54 1:0 A:173332091;C:180805738;G:175271736;T:202574727;N:137637 75 0     173332091 180805738 175271736 202574727 137637 ERX8620326 ERS10857214 ERA9644804 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive 1 0.95775   0.08879   0.6564   0.4718   76   B   usable mapping rate illumina nextseq unknown poly_a trueseq bulk unknown unknown   Belgium 2022-04-21 Larval Larval Head Nervous System
10449 10449 ERR9077164 ERX8620326 ERS10857214 ERP135966 PRJEB51339 RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E-MTAB-11505 Transcriptome Analysis Transcriptome analysis of the heads of 6 dpf sv2a / sv2a+/ and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a / zebrafish larvae. ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21   Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Sv2aHET2S3 SAMEA13254171 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254171|INSDC center alias:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aHET2S3|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/ |individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aHET2S3|sex:not available|strain:AB                 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E MTAB 11505:Sv2aHET2S3 s Sv2aHET2S3 s RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Experimental Factor: genotype:sv2a+/ RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA NextSeq 500   ERP135966 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21 sv2aHET2S3L003-1.fastq.gz fastq 743488189.0 9842286.0 E MTAB 11505:sv2aHET2S3L003 0:75.54 1:0 A:175979238;C:183726319;G:177933958;T:205735955;N:112719 75 0     175979238 183726319 177933958 205735955 112719 ERX8620326 ERS10857214 ERA9644804 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive 1 0.9593   0.08716   0.65437   0.46976   75   B   usable mapping rate illumina nextseq unknown poly_a trueseq bulk unknown unknown   Belgium 2022-04-21 Larval Larval Head Nervous System
10450 10450 ERR9077165 ERX8620326 ERS10857214 ERP135966 PRJEB51339 RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E-MTAB-11505 Transcriptome Analysis Transcriptome analysis of the heads of 6 dpf sv2a / sv2a+/ and sv2a+/+ zebrafish larvae to provide insights into the neuropathological processes underlying the observed epileptic phenotype in sv2a / zebrafish larvae. ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21   Protocols: 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Sv2aHET2S3 SAMEA13254171 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg ENA first public:2022 04 21|ENA last update:2022 04 21|External Id:SAMEA13254171|INSDC center alias:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC center name:Laboratory for Molecular Biodiscovery KU Leuven Campus Gasthuisberg|INSDC first public:2022 04 21T00:32:07Z|INSDC last update:2022 04 21T00:32:07Z|INSDC status:public|Submitter Id:E MTAB 11505:Sv2aHET2S3|age:6|broker name:ArrayExpress|common name:zebrafish|developmental stage:larval stage|genotype:sv2a+/ |individual:pool of 10 heads|organism part:head|sample name:E MTAB 11505:Sv2aHET2S3|sex:not available|strain:AB                 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae E MTAB 11505:Sv2aHET2S3 s Sv2aHET2S3 s RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae 6 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled per sample. Total RNA was extracted using TRIzol reagent Invitrogen followed by phenol chlorophorm extraction and isopropanol precipitation. post ethanol washes the RNA pellet was air dried dissolved in nuclease free water Fermentas. TruSeq RNA Seq sample preparation kit was used to prepare sequencing library of mRNA in accordance with the manufacturer guidelines. Experimental Factor: genotype:sv2a+/ RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA NextSeq 500   ERP135966 NextSeq 500 sequencing; RNA seq experiment of sv2a / sv2a+/ and sv2a+/+ zebrafish larvae ENA FIRST PUBLIC:2022 04 21|ENA LAST UPDATE:2022 04 21 sv2aHET2S3L004-1.fastq.gz fastq 747723481.0 9898304.0 E MTAB 11505:sv2aHET2S3L004 0:75.54 1:0 A:176935451;C:184684782;G:179046040;T:206946124;N:111084 75 0     176935451 184684782 179046040 206946124 111084 ERX8620326 ERS10857214 ERA9644804 Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive Laboratory for Molecular Biodiscovery, KU Leuven, Campus Gasthuisberg|European Nucleotide Archive 1 0.95934   0.08676   0.65533   0.47523   75   B   usable mapping rate illumina nextseq unknown poly_a trueseq bulk unknown unknown   Belgium 2022-04-21 Larval Larval Head Nervous System

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;