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524 rows where experiment.library_layout = "SINGLE" and experiment.library_selection = "PCR"

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devstage_curation_coarse 5

devstage_curation 5

experiment.platform 4

experiment.library_strategy 4

technology 3

experiment.library_source 1

experiment.library_selection 1

  • PCR · 524 ✖

experiment.library_layout 1

  • SINGLE · 524 ✖
Link rowid ▼ run.accession experiment.accession sample.accession study.accession bioproject study.title study.alias study.type study.abstract study.attributes study.PMIDs sample.description sample.title sample.alias sample.centername sample.attributes GEOsample.title GEOsample.dataprocessing GEOsample.source GEOsample.treatmentprotocol GEOsample.extractprotocol GEOsample.growthprotocol GEOsample.characteristics GEOsample.accession experiment.title experiment.alias experiment.library_name experiment.design_description experiment.library_construction_protocol experiment.attributes experiment.library_strategy experiment.library_source experiment.library_selection experiment.library_layout experiment.platform experiment.instrument_model experiment.spot_descriptor experiment.study_ref run.title run.attributes run.filename run.semantic_name run.total_bases run.total_spots run.alias run.read_lengths run.base_counts run.r1_length run.r2_length run.r3_length run.r4_length run.Acount run.Ccount run.Gcount run.Tcount run.Ncount run.experiment run.pool_member submission.accession submission.srasource submission.bioprojectsource seqdetective.n_mates seqdetective.mapping_rate.mate1 seqdetective.mapping_rate.mate2 seqdetective.nofeature_rate.mate1 seqdetective.nofeature_rate.mate2 seqdetective.sparsity.mate1 seqdetective.sparsity.mate2 seqdetective.pos_strand_rate.mate1 seqdetective.pos_strand_rate.mate2 seqdetective.readlen.mate1 seqdetective.readlen.mate2 seqdetective.judgement.mate1 seqdetective.judgement.mate2 seqdetective.judgement.reason platform_family instrument_generation read_bias selection_class prep_kit sc_or_bulk tech_class technology tech_variant submission.bioprojectsource.country earliest_date devstage_curation devstage_curation_coarse tissue_curation tissue_curation_coarse
28470 28470 SRR26253203 SRX21963295 SRS19039869 SRP464138 PRJNA1022587 Danio rerio Raw sequence reads PRJNA1022587 Whole Genome Sequencing In teleost type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes conferring cell resistance to viruses. However the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4 ZF4 cells were stimulated with recombinant IFN1 and IFN4 and were performed transcriptome analysis of the small RNA.         Small RNA IFN4 2   strain:not collected|age:not collected|collection date:2023 08 20|geo loc name:not collected|sex:not collected|tissue:not collected|cell line:ZF4|replicate:biological replicate 22|BioSampleModel:Model organism or animal                 Small RNAseq of zebrafish Small RNA IFND2 Small RNA IFND2 small RNA seq of zebrafish     miRNA-Seq TRANSCRIPTOMIC PCR SINGLE ILLUMINA Illumina NovaSeq 6000   SRP464138     IFN4-2.deadaptor.fq.gz fastq 278362309.0 11056139.0 IFN4 2.deadaptor.fq.gz 0:25.18 A:71944968;C:54562141;G:73333701;T:78511075;N:10424 25       71944968 54562141 73333701 78511075 10424 SRX21963295 SRS19039869 SRA1724093 Shanghai Ocean University|College of Fisheries and Life Science Shanghai Ocean University 1 0.93133   0.07401   0.96181   0.74558   31   B   usable mapping rate illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2023-10-02 Undetermined Undetermined Cell Line Cell Line
28471 28471 SRR26253204 SRX21963294 SRS19039868 SRP464138 PRJNA1022587 Danio rerio Raw sequence reads PRJNA1022587 Whole Genome Sequencing In teleost type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes conferring cell resistance to viruses. However the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4 ZF4 cells were stimulated with recombinant IFN1 and IFN4 and were performed transcriptome analysis of the small RNA.         Small RNA IFN4 1   strain:not collected|age:not collected|collection date:2023 08 20|geo loc name:not collected|sex:not collected|tissue:not collected|cell line:ZF4|replicate:biological replicate 21|BioSampleModel:Model organism or animal                 Small RNAseq of zebrafish Small RNA IFND1 Small RNA IFND1 small RNA seq of zebrafish     miRNA-Seq TRANSCRIPTOMIC PCR SINGLE ILLUMINA Illumina NovaSeq 6000   SRP464138     IFN4-1.deadaptor.fq.gz fastq 289362334.0 11048590.0 IFN4 1.deadaptor.fq.gz 0:26.19 A:73933649;C:59386039;G:76847534;T:79184583;N:10529 26       73933649 59386039 76847534 79184583 10529 SRX21963294 SRS19039868 SRA1724093 Shanghai Ocean University|College of Fisheries and Life Science Shanghai Ocean University 1 0.91683   0.07099   0.96132   0.64882   25   B   usable mapping rate illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2023-10-02 Undetermined Undetermined Cell Line Cell Line
28472 28472 SRR26253205 SRX21963293 SRS19039867 SRP464138 PRJNA1022587 Danio rerio Raw sequence reads PRJNA1022587 Whole Genome Sequencing In teleost type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes conferring cell resistance to viruses. However the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4 ZF4 cells were stimulated with recombinant IFN1 and IFN4 and were performed transcriptome analysis of the small RNA.         Small RNA IFN1 4   strain:not collected|age:not collected|collection date:2023 08 20|geo loc name:not collected|sex:not collected|tissue:not collected|cell line:ZF4|replicate:biological replicate 20|BioSampleModel:Model organism or animal                 Small RNAseq of zebrafish Small RNA IFNA4 Small RNA IFNA4 small RNA seq of zebrafish     miRNA-Seq TRANSCRIPTOMIC PCR SINGLE ILLUMINA Illumina NovaSeq 6000   SRP464138     IFN1-4.deadaptor.fq.gz fastq 270529395.0 11070360.0 IFN1 4.deadaptor.fq.gz 0:24.44 A:69759888;C:54924667;G:71358091;T:74470720;N:16029 24       69759888 54924667 71358091 74470720 16029 SRX21963293 SRS19039867 SRA1724093 Shanghai Ocean University|College of Fisheries and Life Science Shanghai Ocean University 1 0.88469   0.06696   0.96664   0.74853   22   B   usable mapping rate illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2023-10-02 Undetermined Undetermined Cell Line Cell Line
28473 28473 SRR26253206 SRX21963292 SRS19039866 SRP464138 PRJNA1022587 Danio rerio Raw sequence reads PRJNA1022587 Whole Genome Sequencing In teleost type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes conferring cell resistance to viruses. However the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4 ZF4 cells were stimulated with recombinant IFN1 and IFN4 and were performed transcriptome analysis of the small RNA.         Small RNA IFN1 3   strain:not collected|age:not collected|collection date:2023 08 20|geo loc name:not collected|sex:not collected|tissue:not collected|cell line:ZF4|replicate:biological replicate 19|BioSampleModel:Model organism or animal                 Small RNAseq of zebrafish Small RNA IFNA3 Small RNA IFNA3 small RNA seq of zebrafish     miRNA-Seq TRANSCRIPTOMIC PCR SINGLE ILLUMINA Illumina NovaSeq 6000   SRP464138     IFN1-3.deadaptor.fq.gz fastq 353291957.0 11740560.0 IFN1 3.deadaptor.fq.gz 0:30.09 A:89026549;C:76490337;G:94719420;T:93036955;N:18696 30       89026549 76490337 94719420 93036955 18696 SRX21963292 SRS19039866 SRA1724093 Shanghai Ocean University|College of Fisheries and Life Science Shanghai Ocean University 1 0.83151   0.07199   0.96471   0.71641   22   B   usable mapping rate illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2023-10-02 Undetermined Undetermined Cell Line Cell Line
28474 28474 SRR26253207 SRX21963291 SRS19039865 SRP464138 PRJNA1022587 Danio rerio Raw sequence reads PRJNA1022587 Whole Genome Sequencing In teleost type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes conferring cell resistance to viruses. However the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4 ZF4 cells were stimulated with recombinant IFN1 and IFN4 and were performed transcriptome analysis of the small RNA.         Small RNA IFN1 2   strain:not collected|age:not collected|collection date:2023 08 20|geo loc name:not collected|sex:not collected|tissue:not collected|cell line:ZF4|replicate:biological replicate 18|BioSampleModel:Model organism or animal                 Small RNAseq of zebrafish Small RNA IFNA2 Small RNA IFNA2 small RNA seq of zebrafish     miRNA-Seq TRANSCRIPTOMIC PCR SINGLE ILLUMINA Illumina NovaSeq 6000   SRP464138     IFN1-2.deadaptor.fq.gz fastq 257949577.0 11213774.0 IFN1 2.deadaptor.fq.gz 0:23.00 A:67371681;C:51128621;G:67605590;T:71826657;N:17028 23       67371681 51128621 67605590 71826657 17028 SRX21963291 SRS19039865 SRA1724093 Shanghai Ocean University|College of Fisheries and Life Science Shanghai Ocean University 1 0.91396   0.06536   0.97197   0.76269   23   B   usable mapping rate illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2023-10-02 Undetermined Undetermined Cell Line Cell Line
28475 28475 SRR26253208 SRX21963290 SRS19039864 SRP464138 PRJNA1022587 Danio rerio Raw sequence reads PRJNA1022587 Whole Genome Sequencing In teleost type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes conferring cell resistance to viruses. However the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4 ZF4 cells were stimulated with recombinant IFN1 and IFN4 and were performed transcriptome analysis of the small RNA.         Small RNA IFN1 1   strain:not collected|age:not collected|collection date:2023 08 20|geo loc name:not collected|sex:not collected|tissue:not collected|cell line:ZF4|replicate:biological replicate 17|BioSampleModel:Model organism or animal                 Small RNAseq of zebrafish Small RNA IFNA1 Small RNA IFNA1 small RNA seq of zebrafish     miRNA-Seq TRANSCRIPTOMIC PCR SINGLE ILLUMINA Illumina NovaSeq 6000   SRP464138     IFN1-1.deadaptor.fq.gz fastq 329358383.0 11799176.0 IFN1 1.deadaptor.fq.gz 0:27.91 A:84093681;C:68961271;G:86502739;T:89779605;N:21087 27       84093681 68961271 86502739 89779605 21087 SRX21963290 SRS19039864 SRA1724093 Shanghai Ocean University|College of Fisheries and Life Science Shanghai Ocean University 1 0.92116   0.07483   0.96796   0.75179   22   B   usable mapping rate illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2023-10-02 Undetermined Undetermined Cell Line Cell Line
28476 28476 SRR26253209 SRX21963289 SRS19039863 SRP464138 PRJNA1022587 Danio rerio Raw sequence reads PRJNA1022587 Whole Genome Sequencing In teleost type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes conferring cell resistance to viruses. However the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4 ZF4 cells were stimulated with recombinant IFN1 and IFN4 and were performed transcriptome analysis of the small RNA.         Small RNA Control 4   strain:not collected|age:not collected|collection date:2023 08 20|geo loc name:not collected|sex:not collected|tissue:not collected|cell line:ZF4|replicate:biological replicate 16|BioSampleModel:Model organism or animal                 Small RNAseq of zebrafish Small RNA C4 Small RNA C4 small RNA seq of zebrafish     miRNA-Seq TRANSCRIPTOMIC PCR SINGLE ILLUMINA Illumina NovaSeq 6000   SRP464138     Control-4.deadaptor.fq.gz fastq 251577736.0 10951659.0 Control 4.deadaptor.fq.gz 0:22.97 A:65382449;C:50041232;G:66038625;T:70106464;N:8966 22       65382449 50041232 66038625 70106464 8966 SRX21963289 SRS19039863 SRA1724093 Shanghai Ocean University|College of Fisheries and Life Science Shanghai Ocean University 1 0.89744   0.06821   0.96607   0.63829   22   B   usable mapping rate illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2023-10-02 Undetermined Undetermined Cell Line Cell Line
28477 28477 SRR26253210 SRX21963288 SRS19039862 SRP464138 PRJNA1022587 Danio rerio Raw sequence reads PRJNA1022587 Whole Genome Sequencing In teleost type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes conferring cell resistance to viruses. However the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4 ZF4 cells were stimulated with recombinant IFN1 and IFN4 and were performed transcriptome analysis of the small RNA.         Small RNA Control 3   strain:not collected|age:not collected|collection date:2023 08 20|geo loc name:not collected|sex:not collected|tissue:not collected|cell line:ZF4|replicate:biological replicate 15|BioSampleModel:Model organism or animal                 Small RNAseq of zebrafish Small RNA C3 Small RNA C3 small RNA seq of zebrafish     miRNA-Seq TRANSCRIPTOMIC PCR SINGLE ILLUMINA Illumina NovaSeq 6000   SRP464138     Control-3.deadaptor.fq.gz fastq 252164979.0 11004167.0 Control 3.deadaptor.fq.gz 0:22.92 A:65850899;C:48466665;G:66708038;T:71130786;N:8591 22       65850899 48466665 66708038 71130786 8591 SRX21963288 SRS19039862 SRA1724093 Shanghai Ocean University|College of Fisheries and Life Science Shanghai Ocean University 1 0.91567   0.06804   0.96278   0.75579   22   B   usable mapping rate illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2023-10-02 Undetermined Undetermined Cell Line Cell Line
28478 28478 SRR26253211 SRX21963287 SRS19039861 SRP464138 PRJNA1022587 Danio rerio Raw sequence reads PRJNA1022587 Whole Genome Sequencing In teleost type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes conferring cell resistance to viruses. However the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4 ZF4 cells were stimulated with recombinant IFN1 and IFN4 and were performed transcriptome analysis of the small RNA.         Small RNA IFN4 4   strain:not collected|age:not collected|collection date:2023 08 20|geo loc name:not collected|sex:not collected|tissue:not collected|cell line:ZF4|replicate:biological replicate 24|BioSampleModel:Model organism or animal                 Small RNAseq of zebrafish Small RNA IFND4 Small RNA IFND4 small RNA seq of zebrafish     miRNA-Seq TRANSCRIPTOMIC PCR SINGLE ILLUMINA Illumina NovaSeq 6000   SRP464138     IFN4-4.deadaptor.fq.gz fastq 291708053.0 11503883.0 IFN4 4.deadaptor.fq.gz 0:25.36 A:74079231;C:61368459;G:76898572;T:79351225;N:10566 25       74079231 61368459 76898572 79351225 10566 SRX21963287 SRS19039861 SRA1724093 Shanghai Ocean University|College of Fisheries and Life Science Shanghai Ocean University 1 0.88888   0.0633   0.97305   0.74862   23   B   usable mapping rate illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2023-10-02 Undetermined Undetermined Cell Line Cell Line
28479 28479 SRR26253212 SRX21963286 SRS19039860 SRP464138 PRJNA1022587 Danio rerio Raw sequence reads PRJNA1022587 Whole Genome Sequencing In teleost type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes conferring cell resistance to viruses. However the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4 ZF4 cells were stimulated with recombinant IFN1 and IFN4 and were performed transcriptome analysis of the small RNA.         Small RNA IFN4 3   strain:not collected|age:not collected|collection date:2023 08 20|geo loc name:not collected|sex:not collected|tissue:not collected|cell line:ZF4|replicate:biological replicate 23|BioSampleModel:Model organism or animal                 Small RNAseq of zebrafish Small RNA IFND3 Small RNA IFND3 small RNA seq of zebrafish     miRNA-Seq TRANSCRIPTOMIC PCR SINGLE ILLUMINA Illumina NovaSeq 6000   SRP464138     IFN4-3.deadaptor.fq.gz fastq 349995495.0 11885662.0 IFN4 3.deadaptor.fq.gz 0:29.45 A:87443709;C:76373108;G:92741296;T:93425866;N:11516 29       87443709 76373108 92741296 93425866 11516 SRX21963286 SRS19039860 SRA1724093 Shanghai Ocean University|College of Fisheries and Life Science Shanghai Ocean University 1 0.92619   0.06843   0.9709   0.74977   73   B   usable mapping rate illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2023-10-02 Undetermined Undetermined Cell Line Cell Line
28480 28480 SRR26253213 SRX21963285 SRS19039859 SRP464138 PRJNA1022587 Danio rerio Raw sequence reads PRJNA1022587 Whole Genome Sequencing In teleost type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes conferring cell resistance to viruses. However the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4 ZF4 cells were stimulated with recombinant IFN1 and IFN4 and were performed transcriptome analysis of the small RNA.         Small RNA Control 2   strain:not collected|age:not collected|collection date:2023 08 20|geo loc name:not collected|sex:not collected|tissue:not collected|cell line:ZF4|replicate:biological replicate 14|BioSampleModel:Model organism or animal                 Small RNAseq of zebrafish Small RNA C2 Small RNA C2 small RNA seq of zebrafish     miRNA-Seq TRANSCRIPTOMIC PCR SINGLE ILLUMINA Illumina NovaSeq 6000   SRP464138     Control-2.deadaptor.fq.gz fastq 254163676.0 10744164.0 Control 2.deadaptor.fq.gz 0:23.66 A:66003417;C:49309846;G:67463940;T:71377644;N:8829 23       66003417 49309846 67463940 71377644 8829 SRX21963285 SRS19039859 SRA1724093 Shanghai Ocean University|College of Fisheries and Life Science Shanghai Ocean University 1 0.93068   0.06626   0.96441   0.7492   22   B   usable mapping rate illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2023-10-02 Undetermined Undetermined Cell Line Cell Line
28481 28481 SRR26253214 SRX21963284 SRS19039858 SRP464138 PRJNA1022587 Danio rerio Raw sequence reads PRJNA1022587 Whole Genome Sequencing In teleost type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes conferring cell resistance to viruses. However the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4 ZF4 cells were stimulated with recombinant IFN1 and IFN4 and were performed transcriptome analysis of the small RNA.         Small RNA Control 1   strain:not collected|age:not collected|collection date:2023 08 20|geo loc name:not collected|sex:not collected|tissue:not collected|cell line:ZF4|replicate:biological replicate 13|BioSampleModel:Model organism or animal                 Small RNAseq of zebrafish Small RNA C1 Small RNA C1 small RNA seq of zebrafish     miRNA-Seq TRANSCRIPTOMIC PCR SINGLE ILLUMINA Illumina NovaSeq 6000   SRP464138     Control-1.deadaptor.fq.gz fastq 267090429.0 11027241.0 Control 1.deadaptor.fq.gz 0:24.22 A:70162511;C:50705437;G:69872659;T:76339682;N:10140 24       70162511 50705437 69872659 76339682 10140 SRX21963284 SRS19039858 SRA1724093 Shanghai Ocean University|College of Fisheries and Life Science Shanghai Ocean University 1 0.93267   0.07189   0.96735   0.75447   21   B   usable mapping rate illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2023-10-02 Undetermined Undetermined Cell Line Cell Line
28496 28496 SRR26321412 SRX22029502 SRS19102283 SRP465132 PRJNA1025903 Zebrafish cryoinjury regeneration Raw sequence reads PRJNA1025903 Whole Genome Sequencing Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury       3dpci 1 R27   strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal                 RNA seq of zebrafish liver 3 dpci R27 R27 ham and injured livers at 1 3 and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition 3 adult zebrafish livers were pooled per tube discriminating between the injured border and liver tissue from other lobes. Finally 3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice with a plastic pestle to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500 with paired end 75bp reads to a depth of 15M reads per sample.     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ILLUMINA NextSeq 500   SRP465132     R27.fastq fastq 23400.0 312.0 R27.fastq 0:75 A:7949;C:4612;G:4730;T:6100;N:9 75       7949 4612 4730 6100 9 SRX22029502 SRS19102283 SRA1727674 Peter MacCallum Cancer Centre|Organogenesis and Cancer Peter MacCallum Cancer Centre 1 0.89642   0.06772   0.99827   0.75   75   B   usable mapping rate illumina nextseq unknown random_priming unknown bulk bulk bulk   Australia 2023-10-11 Adult Adult Liver Liver and Biliary System
28497 28497 SRR26321413 SRX22029501 SRS19102284 SRP465132 PRJNA1025903 Zebrafish cryoinjury regeneration Raw sequence reads PRJNA1025903 Whole Genome Sequencing Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury       1dpci 4 R22   strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal                 RNA seq of zebrafish liver 1 dpci R22 R22 ham and injured livers at 1 3 and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition 3 adult zebrafish livers were pooled per tube discriminating between the injured border and liver tissue from other lobes. Finally 3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice with a plastic pestle to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500 with paired end 75bp reads to a depth of 15M reads per sample.     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ILLUMINA NextSeq 500   SRP465132     R22.fastq fastq 23400.0 312.0 R22.fastq 0:75 A:7470;C:4460;G:5063;T:6404;N:3 75       7470 4460 5063 6404 3 SRX22029501 SRS19102284 SRA1727674 Peter MacCallum Cancer Centre|Organogenesis and Cancer Peter MacCallum Cancer Centre 1 0.87073   0.12167   0.99801   0.73157   75   B   usable mapping rate illumina nextseq unknown random_priming unknown bulk bulk bulk   Australia 2023-10-11 Adult Adult Liver Liver and Biliary System
28498 28498 SRR26321414 SRX22029500 SRS19102281 SRP465132 PRJNA1025903 Zebrafish cryoinjury regeneration Raw sequence reads PRJNA1025903 Whole Genome Sequencing Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury       R21 R21   strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal                 RNA seq of zebrafish liver 1 dpci R21 R21 ham and injured livers at 1 3 and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition 3 adult zebrafish livers were pooled per tube discriminating between the injured border and liver tissue from other lobes. Finally 3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice with a plastic pestle to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500 with paired end 75bp reads to a depth of 15M reads per sample.     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ILLUMINA NextSeq 500   SRP465132     R21.fastq fastq 23400.0 312.0 R21.fastq 0:75 A:7540;C:4349;G:4857;T:6646;N:8 75       7540 4349 4857 6646 8 SRX22029500 SRS19102281 SRA1727674 Peter MacCallum Cancer Centre|Organogenesis and Cancer Peter MacCallum Cancer Centre 1 0.8839   0.04494   0.99768   0.72769   75   B   usable mapping rate illumina nextseq unknown random_priming unknown bulk bulk bulk   Australia 2023-10-11 Adult Adult Liver Liver and Biliary System
28499 28499 SRR26321415 SRX22029499 SRS19102282 SRP465132 PRJNA1025903 Zebrafish cryoinjury regeneration Raw sequence reads PRJNA1025903 Whole Genome Sequencing Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury       1dpci 2 R18   strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal                 RNA seq of zebrafish liver 1 dpci R18 R18 ham and injured livers at 1 3 and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition 3 adult zebrafish livers were pooled per tube discriminating between the injured border and liver tissue from other lobes. Finally 3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice with a plastic pestle to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500 with paired end 75bp reads to a depth of 15M reads per sample.     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ILLUMINA NextSeq 500   SRP465132     R18.fastq fastq 23400.0 312.0 R18.fastq 0:75 A:7380;C:4430;G:5069;T:6518;N:3 75       7380 4430 5069 6518 3 SRX22029499 SRS19102282 SRA1727674 Peter MacCallum Cancer Centre|Organogenesis and Cancer Peter MacCallum Cancer Centre 1 0.87259   0.11196   0.99784   0.69791   75   B   usable mapping rate illumina nextseq unknown random_priming unknown bulk bulk bulk   Australia 2023-10-11 Adult Adult Liver Liver and Biliary System
28500 28500 SRR26321416 SRX22029498 SRS19102280 SRP465132 PRJNA1025903 Zebrafish cryoinjury regeneration Raw sequence reads PRJNA1025903 Whole Genome Sequencing Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury       1dpci 1 R17   strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal                 RNA seq of zebrafish liver 1 dpci R17 R17 ham and injured livers at 1 3 and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition 3 adult zebrafish livers were pooled per tube discriminating between the injured border and liver tissue from other lobes. Finally 3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice with a plastic pestle to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500 with paired end 75bp reads to a depth of 15M reads per sample.     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ILLUMINA NextSeq 500   SRP465132     R17.fastq fastq 23400.0 312.0 R17.fastq 0:75 A:7322;C:4455;G:5111;T:6507;N:5 75       7322 4455 5111 6507 5 SRX22029498 SRS19102280 SRA1727674 Peter MacCallum Cancer Centre|Organogenesis and Cancer Peter MacCallum Cancer Centre 1 0.90439   0.12749   0.99813   0.71052   75   B   usable mapping rate illumina nextseq unknown random_priming unknown bulk bulk bulk   Australia 2023-10-11 Adult Adult Liver Liver and Biliary System
28501 28501 SRR26321417 SRX22029497 SRS19102279 SRP465132 PRJNA1025903 Zebrafish cryoinjury regeneration Raw sequence reads PRJNA1025903 Whole Genome Sequencing Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury       SHAM 5 R1   strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal                 RNA seq of zebrafish liver sham R1 R1 ham and injured livers at 1 3 and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition 3 adult zebrafish livers were pooled per tube discriminating between the injured border and liver tissue from other lobes. Finally 3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice with a plastic pestle to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500 with paired end 75bp reads to a depth of 15M reads per sample.     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ILLUMINA NextSeq 500   SRP465132     R1.fastq fastq 23400.0 312.0 R1.fastq 0:75 A:7934;C:4560;G:4922;T:5980;N:4 75       7934 4560 4922 5980 4 SRX22029497 SRS19102279 SRA1727674 Peter MacCallum Cancer Centre|Organogenesis and Cancer Peter MacCallum Cancer Centre 1 0.87045   0.10526   0.99805   0.71978   75   B   usable mapping rate illumina nextseq unknown random_priming unknown bulk bulk bulk   Australia 2023-10-11 Adult Adult Liver Liver and Biliary System
28502 28502 SRR26321418 SRX22029496 SRS19102277 SRP465132 PRJNA1025903 Zebrafish cryoinjury regeneration Raw sequence reads PRJNA1025903 Whole Genome Sequencing Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury       SHAM 4 R64   strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal                 RNA seq of zebrafish liver sham R64 R64 ham and injured livers at 1 3 and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition 3 adult zebrafish livers were pooled per tube discriminating between the injured border and liver tissue from other lobes. Finally 3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice with a plastic pestle to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500 with paired end 75bp reads to a depth of 15M reads per sample.     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ILLUMINA NextSeq 500   SRP465132     R64.fastq fastq 23400.0 312.0 R64.fastq 0:75 A:7844;C:4626;G:4804;T:6126;N:0 75       7844 4626 4804 6126 0 SRX22029496 SRS19102277 SRA1727674 Peter MacCallum Cancer Centre|Organogenesis and Cancer Peter MacCallum Cancer Centre 1 0.90119   0.07509   0.99839   0.8   75   B   usable mapping rate illumina nextseq unknown random_priming unknown bulk bulk bulk   Australia 2023-10-11 Adult Adult Liver Liver and Biliary System
28503 28503 SRR26321419 SRX22029495 SRS19102278 SRP465132 PRJNA1025903 Zebrafish cryoinjury regeneration Raw sequence reads PRJNA1025903 Whole Genome Sequencing Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury       SHAM 3 R61   strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal                 RNA seq of zebrafish liver sham R61 R61 ham and injured livers at 1 3 and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition 3 adult zebrafish livers were pooled per tube discriminating between the injured border and liver tissue from other lobes. Finally 3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice with a plastic pestle to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500 with paired end 75bp reads to a depth of 15M reads per sample.     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ILLUMINA NextSeq 500   SRP465132     R61.fastq fastq 23400.0 312.0 R61.fastq 0:75 A:7454;C:4556;G:4960;T:6425;N:5 75       7454 4556 4960 6425 5 SRX22029495 SRS19102278 SRA1727674 Peter MacCallum Cancer Centre|Organogenesis and Cancer Peter MacCallum Cancer Centre 1 0.89098   0.06015   0.99813   0.77102   75   B   usable mapping rate illumina nextseq unknown random_priming unknown bulk bulk bulk   Australia 2023-10-11 Adult Adult Liver Liver and Biliary System
28504 28504 SRR26321420 SRX22029494 SRS19102276 SRP465132 PRJNA1025903 Zebrafish cryoinjury regeneration Raw sequence reads PRJNA1025903 Whole Genome Sequencing Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury       7dpci 4 30   strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal                 RNA seq of zebrafish liver 7 dpci 30 30 ham and injured livers at 1 3 and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition 3 adult zebrafish livers were pooled per tube discriminating between the injured border and liver tissue from other lobes. Finally 3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice with a plastic pestle to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500 with paired end 75bp reads to a depth of 15M reads per sample.     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ILLUMINA NextSeq 500   SRP465132     30.fastq fastq 23400.0 312.0 30.fastq 0:75 A:7732;C:4528;G:5150;T:5987;N:3 75       7732 4528 5150 5987 3 SRX22029494 SRS19102276 SRA1727674 Peter MacCallum Cancer Centre|Organogenesis and Cancer Peter MacCallum Cancer Centre 1 0.88447   0.13147   0.99772   0.71584   75   B   usable mapping rate illumina nextseq unknown random_priming unknown bulk bulk bulk   Australia 2023-10-11 Adult Adult Liver Liver and Biliary System
28505 28505 SRR26321421 SRX22029493 SRS19102275 SRP465132 PRJNA1025903 Zebrafish cryoinjury regeneration Raw sequence reads PRJNA1025903 Whole Genome Sequencing Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury       R11 R11   strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal                 RNA seq of zebrafish liver 7 dpci R11 R11 ham and injured livers at 1 3 and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition 3 adult zebrafish livers were pooled per tube discriminating between the injured border and liver tissue from other lobes. Finally 3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice with a plastic pestle to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500 with paired end 75bp reads to a depth of 15M reads per sample.     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ILLUMINA NextSeq 500   SRP465132     R11.fastq fastq 23400.0 312.0 R11.fastq 0:75 A:7818;C:4507;G:5107;T:5956;N:12 75       7818 4507 5107 5956 12 SRX22029493 SRS19102275 SRA1727674 Peter MacCallum Cancer Centre|Organogenesis and Cancer Peter MacCallum Cancer Centre 1 0.89345   0.11475   0.99847   0.82258   75   B   usable mapping rate illumina nextseq unknown random_priming unknown bulk bulk bulk   Australia 2023-10-11 Adult Adult Liver Liver and Biliary System
28506 28506 SRR26321422 SRX22029492 SRS19102274 SRP465132 PRJNA1025903 Zebrafish cryoinjury regeneration Raw sequence reads PRJNA1025903 Whole Genome Sequencing Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury       7dpci 2 31   strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:liver|BioSampleModel:Model organism or animal                 RNA seq of zebrafish liver 7 dpci 31 31 ham and injured livers at 1 3 and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition 3 adult zebrafish livers were pooled per tube discriminating between the injured border and liver tissue from other lobes. Finally 3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice with a plastic pestle to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500 with paired end 75bp reads to a depth of 15M reads per sample.     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ILLUMINA NextSeq 500   SRP465132     31.fastq fastq 23400.0 312.0 31.fastq 0:75 A:7470;C:4619;G:4802;T:6504;N:5 75       7470 4619 4802 6504 5 SRX22029492 SRS19102274 SRA1727674 Peter MacCallum Cancer Centre|Organogenesis and Cancer Peter MacCallum Cancer Centre 1 0.87699   0.11111   0.99829   0.78918   75   B   usable mapping rate illumina nextseq unknown random_priming unknown bulk bulk bulk   Australia 2023-10-11 Adult Adult Liver Liver and Biliary System
28507 28507 SRR26321423 SRX22029491 SRS19102273 SRP465132 PRJNA1025903 Zebrafish cryoinjury regeneration Raw sequence reads PRJNA1025903 Whole Genome Sequencing Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury       7dpci 1 R9   strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal                 RNA seq of zebrafish liver 7 dpci R9 R9 ham and injured livers at 1 3 and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition 3 adult zebrafish livers were pooled per tube discriminating between the injured border and liver tissue from other lobes. Finally 3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice with a plastic pestle to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500 with paired end 75bp reads to a depth of 15M reads per sample.     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ILLUMINA NextSeq 500   SRP465132     R9.fastq fastq 23400.0 312.0 R9.fastq 0:75 A:8130;C:4537;G:4809;T:5917;N:7 75       8130 4537 4809 5917 7 SRX22029491 SRS19102273 SRA1727674 Peter MacCallum Cancer Centre|Organogenesis and Cancer Peter MacCallum Cancer Centre 1 0.83588   0.05725   0.99801   0.68586   75   B   usable mapping rate illumina nextseq unknown random_priming unknown bulk bulk bulk   Australia 2023-10-11 Adult Adult Liver Liver and Biliary System
28508 28508 SRR26321424 SRX22029490 SRS19102272 SRP465132 PRJNA1025903 Zebrafish cryoinjury regeneration Raw sequence reads PRJNA1025903 Whole Genome Sequencing Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury       3dpci 4 R33   strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal                 RNA seq of zebrafish liver 3 dpci R33 R33 ham and injured livers at 1 3 and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition 3 adult zebrafish livers were pooled per tube discriminating between the injured border and liver tissue from other lobes. Finally 3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice with a plastic pestle to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500 with paired end 75bp reads to a depth of 15M reads per sample.     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ILLUMINA NextSeq 500   SRP465132     R33.fastq fastq 23400.0 312.0 R33.fastq 0:75 A:7745;C:4421;G:4867;T:6360;N:7 75       7745 4421 4867 6360 7 SRX22029490 SRS19102272 SRA1727674 Peter MacCallum Cancer Centre|Organogenesis and Cancer Peter MacCallum Cancer Centre 1 0.87259   0.07335   0.99805   0.71428   75   B   usable mapping rate illumina nextseq unknown random_priming unknown bulk bulk bulk   Australia 2023-10-11 Adult Adult Liver Liver and Biliary System
28509 28509 SRR26321425 SRX22029489 SRS19102271 SRP465132 PRJNA1025903 Zebrafish cryoinjury regeneration Raw sequence reads PRJNA1025903 Whole Genome Sequencing Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury       3dpci 3 R31   strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal                 RNA seq of zebrafish liver 3 dpci R31 R31 ham and injured livers at 1 3 and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition 3 adult zebrafish livers were pooled per tube discriminating between the injured border and liver tissue from other lobes. Finally 3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice with a plastic pestle to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500 with paired end 75bp reads to a depth of 15M reads per sample.     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ILLUMINA NextSeq 500   SRP465132     R31.fastq fastq 23400.0 312.0 R31.fastq 0:75 A:7441;C:4483;G:5163;T:6313;N:0 75       7441 4483 5163 6313 0 SRX22029489 SRS19102271 SRA1727674 Peter MacCallum Cancer Centre|Organogenesis and Cancer Peter MacCallum Cancer Centre 1 0.9   0.05925   0.9977   0.68325   75   B   usable mapping rate illumina nextseq unknown random_priming unknown bulk bulk bulk   Australia 2023-10-11 Adult Adult Liver Liver and Biliary System
28510 28510 SRR26321426 SRX22029488 SRS19102270 SRP465132 PRJNA1025903 Zebrafish cryoinjury regeneration Raw sequence reads PRJNA1025903 Whole Genome Sequencing Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury       3dpci 2 R29   strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal                 RNA seq of zebrafish liver 3 dpci R29 R29 ham and injured livers at 1 3 and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition 3 adult zebrafish livers were pooled per tube discriminating between the injured border and liver tissue from other lobes. Finally 3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice with a plastic pestle to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500 with paired end 75bp reads to a depth of 15M reads per sample.     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ILLUMINA NextSeq 500   SRP465132     R29.fastq fastq 23400.0 312.0 R29.fastq 0:75 A:7379;C:4698;G:5166;T:6156;N:1 75       7379 4698 5166 6156 1 SRX22029488 SRS19102270 SRA1727674 Peter MacCallum Cancer Centre|Organogenesis and Cancer Peter MacCallum Cancer Centre 1 0.91016   0.05859   0.99797   0.74528   75   B   usable mapping rate illumina nextseq unknown random_priming unknown bulk bulk bulk   Australia 2023-10-11 Adult Adult Liver Liver and Biliary System
28511 28511 SRR26321427 SRX22029487 SRS19102269 SRP465132 PRJNA1025903 Zebrafish cryoinjury regeneration Raw sequence reads PRJNA1025903 Whole Genome Sequencing Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury       SHAM 2 R62   strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia|sex:male|tissue:Liver|BioSampleModel:Model organism or animal                 RNA seq of zebrafish liver sham R62 R62 ham and injured livers at 1 3 and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition 3 adult zebrafish livers were pooled per tube discriminating between the injured border and liver tissue from other lobes. Finally 3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice with a plastic pestle to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500 with paired end 75bp reads to a depth of 15M reads per sample.     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ILLUMINA NextSeq 500   SRP465132     R62.fastq fastq 23400.0 312.0 R62.fastq 0:75 A:7383;C:4566;G:4713;T:6728;N:10 75       7383 4566 4713 6728 10 SRX22029487 SRS19102269 SRA1727674 Peter MacCallum Cancer Centre|Organogenesis and Cancer Peter MacCallum Cancer Centre 1 0.91571   0.05363   0.99835   0.77674   75   B   usable mapping rate illumina nextseq unknown random_priming unknown bulk bulk bulk   Australia 2023-10-11 Adult Adult Liver Liver and Biliary System
28512 28512 SRR26321428 SRX22029486 SRS19102268 SRP465132 PRJNA1025903 Zebrafish cryoinjury regeneration Raw sequence reads PRJNA1025903 Whole Genome Sequencing Bulk RNA seq collection of adult zebrafish livers at different stages of regeneration upon liver croyinjury     Replicate 1 for SHAM SHAM 1 R63   strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:9 month|dev stage:maturity|collection date:2021 07 24|geo loc name:Australia: Melbourne|sex:male|tissue:Liver|BioSampleModel:Model organism or animal                 RNA seq of zebrafish liver sham R63 R63 ham and injured livers at 1 3 and 7 dpci were phenotyped under the fluorescent stereomicroscope NSZ 606 Binocular Zoom fitted with a NightSea SFA light base to confirm the presence of insult upon cryoinjury. In addition 3 adult zebrafish livers were pooled per tube discriminating between the injured border and liver tissue from other lobes. Finally 3 replicates of 3 pooled livers were used for library preparation. Livers were transferred to a final volume of 300uL of cold TRIzolTM Thermo Fisher Scientific per tube on ice. Livers were homogenized using the mechanical homogenizer for 30s on ice with a plastic pestle to ensure fine homogenization. RNA was extracted according to the manufacturer guidelines Direct zolTM RNA MiniPrep kit Zymo Research. RNA quality was confirmed using an Agilent 4200 Tapestation System. Libraries were sequenced in Illumina NextSeq 500 with paired end 75bp reads to a depth of 15M reads per sample.     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ILLUMINA NextSeq 500   SRP465132     R63.fastq fastq 23400.0 312.0 R63.fastq 0:75 A:7516;C:4606;G:4765;T:6508;N:5 75       7516 4606 4765 6508 5 SRX22029486 SRS19102268 SRA1727674 Peter MacCallum Cancer Centre|Organogenesis and Cancer Peter MacCallum Cancer Centre 1 0.90385   0.0423   0.99805   0.72429   75   B   usable mapping rate illumina nextseq unknown random_priming unknown bulk bulk bulk   Australia 2023-10-11 Adult Adult Liver Liver and Biliary System
33439 33439 SRR30280831 SRX25741613 SRS22381131 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPAGE 10 BP10# DMSO 3   strain:TU|isolate:90|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPAGE 10 BP10# DMSO 3 BP10# DMSO 3 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP10#-DMSO-3.fastq.gz fastq 92459659.0 929177.0 BP10# DMSO 3.fastq.gz 0:99.51 A:21511804;C:24897124;G:24440562;T:21610169;N:0 99       21511804 24897124 24440562 21610169 0 SRX25741613 SRS22381131 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33440 33440 SRR30280704 SRX25741612 SRS22381130 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPAGE 9 BP10# DMSO 2   strain:TU|isolate:89|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPAGE 9 BP10# DMSO 2 BP10# DMSO 2 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP10#-DMSO-2.fastq.gz fastq 184067375.0 1813659.0 BP10# DMSO 2.fastq.gz 0:101.49 A:43014934;C:49110340;G:48560159;T:43381942;N:0 101       43014934 49110340 48560159 43381942 0 SRX25741612 SRS22381130 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33441 33441 SRR30280705 SRX25741611 SRS22381129 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPAGE 8 BP10# DMSO 1   strain:TU|isolate:88|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPAGE 8 BP10# DMSO 1 BP10# DMSO 1 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP10#-DMSO-1.fastq.gz fastq 148237805.0 1464542.0 BP10# DMSO 1.fastq.gz 0:101.22 A:34729919;C:39397602;G:39251519;T:34858765;N:0 101       34729919 39397602 39251519 34858765 0 SRX25741611 SRS22381129 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33442 33442 SRR30280706 SRX25741610 SRS22381128 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPAGE 7 BP10# 7   strain:TU|isolate:87|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPAGE 7 BP10# 7 BP10# 7 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP10#-7.fastq.gz fastq 164490060.0 1636480.0 BP10# 7.fastq.gz 0:100.51 A:38838318;C:43438465;G:43456970;T:38756307;N:0 100       38838318 43438465 43456970 38756307 0 SRX25741610 SRS22381128 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33443 33443 SRR30280707 SRX25741609 SRS22381127 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPAGE 6 BP10# 6   strain:TU|isolate:86|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPAGE 6 BP10# 6 BP10# 6 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP10#-6.fastq.gz fastq 155194512.0 1505703.0 BP10# 6.fastq.gz 0:103.07 A:36677853;C:40887150;G:40906247;T:36723262;N:0 103       36677853 40887150 40906247 36723262 0 SRX25741609 SRS22381127 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33444 33444 SRR30280708 SRX25741608 SRS22381126 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPAGE 5 BP10# 5   strain:TU|isolate:85|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPAGE 5 BP10# 5 BP10# 5 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP10#-5.fastq.gz fastq 163104451.0 1593080.0 BP10# 5.fastq.gz 0:102.38 A:38629973;C:43080977;G:42996215;T:38397286;N:0 102       38629973 43080977 42996215 38397286 0 SRX25741608 SRS22381126 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33445 33445 SRR30280709 SRX25741607 SRS22381125 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPAGE 4 BP10# 4   strain:TU|isolate:84|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPAGE 4 BP10# 4 BP10# 4 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP10#-4.fastq.gz fastq 141101402.0 1409537.0 BP10# 4.fastq.gz 0:100.10 A:33334876;C:37175155;G:37298446;T:33292925;N:0 100       33334876 37175155 37298446 33292925 0 SRX25741607 SRS22381125 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33446 33446 SRR30280710 SRX25741606 SRS22381124 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPAGE 3 BP10# 3   strain:TU|isolate:83|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPAGE 3 BP10# 3 BP10# 3 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP10#-3.fastq.gz fastq 156294355.0 1507427.0 BP10# 3.fastq.gz 0:103.68 A:36910418;C:41342273;G:41169658;T:36872006;N:0 103       36910418 41342273 41169658 36872006 0 SRX25741606 SRS22381124 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33447 33447 SRR30280711 SRX25741605 SRS22381123 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPAGE 2 BP10# 2   strain:TU|isolate:82|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPAGE 2 BP10# 2 BP10# 2 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP10#-2.fastq.gz fastq 111628166.0 1080707.0 BP10# 2.fastq.gz 0:103.29 A:26410755;C:29627534;G:29253738;T:26336139;N:0 103       26410755 29627534 29253738 26336139 0 SRX25741605 SRS22381123 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33448 33448 SRR30280712 SRX25741604 SRS22381122 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPAGE 1 BP10# 1   strain:TU|isolate:81|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPAGE 1 BP10# 1 BP10# 1 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP10#-1.fastq.gz fastq 143973283.0 1411136.0 BP10# 1.fastq.gz 0:102.03 A:34301322;C:37717275;G:37805886;T:34148800;N:0 102       34301322 37717275 37805886 34148800 0 SRX25741604 SRS22381122 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33449 33449 SRR30280713 SRX25741603 SRS22381120 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPS 9 BP2# DMSO 2   strain:TU|isolate:9|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPS 9 BP2# DMSO 2 BP2# DMSO 2 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP2#-DMSO-2.fastq.gz fastq 121679118.0 1146532.0 BP2# DMSO 2.fastq.gz 0:106.13 A:28957172;C:31903260;G:31955173;T:28863513;N:0 106       28957172 31903260 31955173 28863513 0 SRX25741603 SRS22381120 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33450 33450 SRR30280714 SRX25741602 SRS22381121 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPTMC 10 BP8# DMSO 3   strain:TU|isolate:80|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPTMC 10 BP8# DMSO 3 BP8# DMSO 3 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP8#-DMSO-3.fastq.gz fastq 116509377.0 1201618.0 BP8# DMSO 3.fastq.gz 0:96.96 A:27076619;C:31149115;G:31146213;T:27137430;N:0 96       27076619 31149115 31146213 27137430 0 SRX25741602 SRS22381121 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33451 33451 SRR30280715 SRX25741601 SRS22381119 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPTMC 9 BP8# DMSO 2   strain:TU|isolate:79|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPTMC 9 BP8# DMSO 2 BP8# DMSO 2 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP8#-DMSO-2.fastq.gz fastq 126980560.0 1245267.0 BP8# DMSO 2.fastq.gz 0:101.97 A:30148136;C:33803559;G:33492078;T:29536787;N:0 101       30148136 33803559 33492078 29536787 0 SRX25741601 SRS22381119 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33452 33452 SRR30280716 SRX25741600 SRS22381118 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPTMC 8 BP8# DMSO 1   strain:TU|isolate:78|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPTMC 8 BP8# DMSO 1 BP8# DMSO 1 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP8#-DMSO-1.fastq.gz fastq 123397953.0 1167071.0 BP8# DMSO 1.fastq.gz 0:105.73 A:28979230;C:32683758;G:32531951;T:29203014;N:0 105       28979230 32683758 32531951 29203014 0 SRX25741600 SRS22381118 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33453 33453 SRR30280717 SRX25741599 SRS22381117 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPTMC 7 BP8# 7   strain:TU|isolate:77|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPTMC 7 BP8# 7 BP8# 7 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP8#-7.fastq.gz fastq 117872895.0 1119299.0 BP8# 7.fastq.gz 0:105.31 A:27851183;C:31344900;G:30718485;T:27958327;N:0 105       27851183 31344900 30718485 27958327 0 SRX25741599 SRS22381117 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33454 33454 SRR30280718 SRX25741598 SRS22381116 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPTMC 6 BP8# 6   strain:TU|isolate:76|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPTMC 6 BP8# 6 BP8# 6 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP8#-6.fastq.gz fastq 111957625.0 1071866.0 BP8# 6.fastq.gz 0:104.45 A:26648862;C:29449571;G:29516510;T:26342682;N:0 104       26648862 29449571 29516510 26342682 0 SRX25741598 SRS22381116 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33455 33455 SRR30280719 SRX25741597 SRS22381115 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPTMC 5 BP8# 5   strain:TU|isolate:75|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPTMC 5 BP8# 5 BP8# 5 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP8#-5.fastq.gz fastq 126372290.0 1210093.0 BP8# 5.fastq.gz 0:104.43 A:30062430;C:33314558;G:33069100;T:29926202;N:0 104       30062430 33314558 33069100 29926202 0 SRX25741597 SRS22381115 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33456 33456 SRR30280720 SRX25741596 SRS22381114 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPTMC 4 BP8# 4   strain:TU|isolate:74|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPTMC 4 BP8# 4 BP8# 4 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP8#-4.fastq.gz fastq 128721856.0 1239512.0 BP8# 4.fastq.gz 0:103.85 A:30267273;C:34185892;G:33688377;T:30580314;N:0 103       30267273 34185892 33688377 30580314 0 SRX25741596 SRS22381114 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33457 33457 SRR30280721 SRX25741595 SRS22381113 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPTMC 3 BP8# 3   strain:TU|isolate:73|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPTMC 3 BP8# 3 BP8# 3 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP8#-3.fastq.gz fastq 128200329.0 1234995.0 BP8# 3.fastq.gz 0:103.81 A:30417908;C:33785230;G:33670842;T:30326349;N:0 103       30417908 33785230 33670842 30326349 0 SRX25741595 SRS22381113 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33458 33458 SRR30280722 SRX25741594 SRS22381112 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPTMC 2 BP8# 2   strain:TU|isolate:72|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPTMC 2 BP8# 2 BP8# 2 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP8#-2.fastq.gz fastq 99353699.0 947145.0 BP8# 2.fastq.gz 0:104.90 A:23560131;C:26008128;G:26310676;T:23474764;N:0 104       23560131 26008128 26310676 23474764 0 SRX25741594 SRS22381112 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33459 33459 SRR30280723 SRX25741593 SRS22381111 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPTMC 1 BP8# 1   strain:TU|isolate:71|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPTMC 1 BP8# 1 BP8# 1 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP8#-1.fastq.gz fastq 101253709.0 974909.0 BP8# 1.fastq.gz 0:103.86 A:24014647;C:26648401;G:26749516;T:23841145;N:0 103       24014647 26648401 26749516 23841145 0 SRX25741593 SRS22381111 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33460 33460 SRR30280724 SRX25741592 SRS22381110 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPS 8 BP2# DMSO 1   strain:TU|isolate:8|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPS 8 BP2# DMSO 1 BP2# DMSO 1 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP2#-DMSO-1.fastq.gz fastq 54970926.0 518074.0 BP2# DMSO 1.fastq.gz 0:106.11 A:13057581;C:14507897;G:14456016;T:12949432;N:0 106       13057581 14507897 14456016 12949432 0 SRX25741592 SRS22381110 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33461 33461 SRR30280725 SRX25741591 SRS22381109 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPP 10 BP7# DMSO 3   strain:TU|isolate:70|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPP 10 BP7# DMSO 3 BP7# DMSO 3 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP7#-DMSO-3.fastq.gz fastq 123214657.0 1237962.0 BP7# DMSO 3.fastq.gz 0:99.53 A:28785213;C:32846077;G:32681550;T:28901817;N:0 99       28785213 32846077 32681550 28901817 0 SRX25741591 SRS22381109 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33462 33462 SRR30280726 SRX25741590 SRS22381108 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPP 9 BP7# DMSO 2   strain:TU|isolate:69|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPP 9 BP7# DMSO 2 BP7# DMSO 2 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP7#-DMSO-2.fastq.gz fastq 41215713.0 423271.0 BP7# DMSO 2.fastq.gz 0:97.37 A:9589570;C:11133557;G:10895490;T:9597096;N:0 97       9589570 11133557 10895490 9597096 0 SRX25741590 SRS22381108 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33463 33463 SRR30280727 SRX25741589 SRS22381107 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPP 8 BP7# DMSO 1   strain:TU|isolate:68|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPP 8 BP7# DMSO 1 BP7# DMSO 1 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP7#-DMSO-1.fastq.gz fastq 250009982.0 2396988.0 BP7# DMSO 1.fastq.gz 0:104.30 A:59211578;C:66112203;G:65641188;T:59045013;N:0 104       59211578 66112203 65641188 59045013 0 SRX25741589 SRS22381107 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33464 33464 SRR30280728 SRX25741588 SRS22381106 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPP 7 BP7# 7   strain:TU|isolate:67|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPP 7 BP7# 7 BP7# 7 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP7#-7.fastq.gz fastq 44725970.0 423428.0 BP7# 7.fastq.gz 0:105.63 A:10573402;C:11833576;G:11724776;T:10594216;N:0 105       10573402 11833576 11724776 10594216 0 SRX25741588 SRS22381106 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33465 33465 SRR30280729 SRX25741587 SRS22381105 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPP 6 BP7# 6   strain:TU|isolate:66|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPP 6 BP7# 6 BP7# 6 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP7#-6.fastq.gz fastq 145545693.0 1385533.0 BP7# 6.fastq.gz 0:105.05 A:34431733;C:38602041;G:38257359;T:34254560;N:0 105       34431733 38602041 38257359 34254560 0 SRX25741587 SRS22381105 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33466 33466 SRR30280730 SRX25741586 SRS22381104 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPP 5 BP7# 5   strain:TU|isolate:65|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPP 5 BP7# 5 BP7# 5 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP7#-5.fastq.gz fastq 178532872.0 1748047.0 BP7# 5.fastq.gz 0:102.13 A:42591575;C:46798657;G:46820438;T:42322202;N:0 102       42591575 46798657 46820438 42322202 0 SRX25741586 SRS22381104 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33467 33467 SRR30280731 SRX25741585 SRS22381103 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPP 4 BP7# 4   strain:TU|isolate:64|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPP 4 BP7# 4 BP7# 4 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP7#-4.fastq.gz fastq 59046400.0 556476.0 BP7# 4.fastq.gz 0:106.11 A:14036205;C:15600456;G:15470219;T:13939520;N:0 106       14036205 15600456 15470219 13939520 0 SRX25741585 SRS22381103 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33468 33468 SRR30280732 SRX25741584 SRS22381102 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPP 3 BP7# 3   strain:TU|isolate:63|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPP 3 BP7# 3 BP7# 3 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP7#-3.fastq.gz fastq 167725955.0 1635470.0 BP7# 3.fastq.gz 0:102.56 A:39786240;C:44180010;G:44154342;T:39605363;N:0 102       39786240 44180010 44154342 39605363 0 SRX25741584 SRS22381102 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33469 33469 SRR30280733 SRX25741583 SRS22381101 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPP 2 BP7# 2   strain:TU|isolate:62|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPP 2 BP7# 2 BP7# 2 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP7#-2.fastq.gz fastq 160305207.0 1553984.0 BP7# 2.fastq.gz 0:103.16 A:38057812;C:42240658;G:42101188;T:37905549;N:0 103       38057812 42240658 42101188 37905549 0 SRX25741583 SRS22381101 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33470 33470 SRR30280734 SRX25741582 SRS22381100 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPP 1 BP7# 1   strain:TU|isolate:61|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPP 1 BP7# 1 BP7# 1 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP7#-1.fastq.gz fastq 170723714.0 1640146.0 BP7# 1.fastq.gz 0:104.09 A:40492006;C:45082123;G:44790747;T:40358838;N:0 104       40492006 45082123 44790747 40358838 0 SRX25741582 SRS22381100 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33471 33471 SRR30280735 SRX25741581 SRS22381099 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPS 7 BP2# 7   strain:TU|isolate:7|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPS 7 BP2# 7 BP2# 7 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP2#-7.fastq.gz fastq 38882822.0 376278.0 BP2# 7.fastq.gz 0:103.34 A:9199994;C:10348494;G:10211553;T:9122781;N:0 103       9199994 10348494 10211553 9122781 0 SRX25741581 SRS22381099 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33472 33472 SRR30280736 SRX25741580 SRS22381098 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPPH 10 BP6# DMSO 3   strain:TU|isolate:60|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPPH 10 BP6# DMSO 3 BP6# DMSO 3 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP6#-DMSO-3.fastq.gz fastq 168637726.0 1697190.0 BP6# DMSO 3.fastq.gz 0:99.36 A:39372962;C:45045318;G:44821656;T:39397790;N:0 99       39372962 45045318 44821656 39397790 0 SRX25741580 SRS22381098 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33473 33473 SRR30280737 SRX25741579 SRS22381097 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPPH 9 BP6# DMSO 2   strain:TU|isolate:59|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPPH 9 BP6# DMSO 2 BP6# DMSO 2 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP6#-DMSO-2.fastq.gz fastq 84169374.0 885774.0 BP6# DMSO 2.fastq.gz 0:95.02 A:19595849;C:22311196;G:22786761;T:19475568;N:0 95       19595849 22311196 22786761 19475568 0 SRX25741579 SRS22381097 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33474 33474 SRR30280738 SRX25741578 SRS22381096 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPPH 8 BP6# DMSO 1   strain:TU|isolate:58|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPPH 8 BP6# DMSO 1 BP6# DMSO 1 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP6#-DMSO-1.fastq.gz fastq 62914420.0 598585.0 BP6# DMSO 1.fastq.gz 0:105.11 A:14828390;C:16725889;G:16466687;T:14893454;N:0 105       14828390 16725889 16466687 14893454 0 SRX25741578 SRS22381096 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33475 33475 SRR30280739 SRX25741577 SRS22381095 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPPH 7 BP6# 7   strain:TU|isolate:57|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPPH 7 BP6# 7 BP6# 7 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP6#-7.fastq.gz fastq 57364216.0 554366.0 BP6# 7.fastq.gz 0:103.48 A:13557873;C:15204286;G:15249012;T:13353045;N:0 103       13557873 15204286 15249012 13353045 0 SRX25741577 SRS22381095 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33476 33476 SRR30280740 SRX25741576 SRS22381094 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPPH 6 BP6# 6   strain:TU|isolate:56|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPPH 6 BP6# 6 BP6# 6 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP6#-6.fastq.gz fastq 71062843.0 690536.0 BP6# 6.fastq.gz 0:102.91 A:16797854;C:18816496;G:18773789;T:16674704;N:0 102       16797854 18816496 18773789 16674704 0 SRX25741576 SRS22381094 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33477 33477 SRR30280741 SRX25741575 SRS22381093 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPPH 5 BP6# 5   strain:TU|isolate:55|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPPH 5 BP6# 5 BP6# 5 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP6#-5.fastq.gz fastq 388324559.0 3662531.0 BP6# 5.fastq.gz 0:106.03 A:91880623;C:102595870;G:102276868;T:91571198;N:0 106       91880623 102595870 102276868 91571198 0 SRX25741575 SRS22381093 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33478 33478 SRR30280742 SRX25741574 SRS22381092 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPPH 4 BP6# 4   strain:TU|isolate:54|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPPH 4 BP6# 4 BP6# 4 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP6#-4.fastq.gz fastq 53969235.0 528607.0 BP6# 4.fastq.gz 0:102.10 A:12709612;C:14307567;G:14331038;T:12621018;N:0 102       12709612 14307567 14331038 12621018 0 SRX25741574 SRS22381092 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33479 33479 SRR30280743 SRX25741573 SRS22381091 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPPH 3 BP6# 3   strain:TU|isolate:53|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPPH 3 BP6# 3 BP6# 3 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP6#-3.fastq.gz fastq 459563075.0 4338540.0 BP6# 3.fastq.gz 0:105.93 A:109287374;C:121502158;G:121023009;T:107750534;N:0 105       109287374 121502158 121023009 107750534 0 SRX25741573 SRS22381091 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33480 33480 SRR30280744 SRX25741572 SRS22381090 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPPH 2 BP6# 2   strain:TU|isolate:52|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPPH 2 BP6# 2 BP6# 2 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP6#-2.fastq.gz fastq 71041410.0 672229.0 BP6# 2.fastq.gz 0:105.68 A:16754424;C:18821001;G:18671023;T:16794962;N:0 105       16754424 18821001 18671023 16794962 0 SRX25741572 SRS22381090 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33481 33481 SRR30280745 SRX25741571 SRS22381089 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPPH 1 BP6# 1   strain:TU|isolate:51|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPPH 1 BP6# 1 BP6# 1 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP6#-1.fastq.gz fastq 80894902.0 777427.0 BP6# 1.fastq.gz 0:104.05 A:19045795;C:21492943;G:21345360;T:19010804;N:0 104       19045795 21492943 21345360 19010804 0 SRX25741571 SRS22381089 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33482 33482 SRR30280746 SRX25741570 SRS22381088 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPS 6 BP2# 6   strain:TU|isolate:6|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPS 6 BP2# 6 BP2# 6 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP2#-6.fastq.gz fastq 41107063.0 387968.0 BP2# 6.fastq.gz 0:105.95 A:9745763;C:10874420;G:10753007;T:9733873;N:0 105       9745763 10874420 10753007 9733873 0 SRX25741570 SRS22381088 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33483 33483 SRR30280747 SRX25741569 SRS22381087 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPM 10 BP5# DMSO 3   strain:TU|isolate:50|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPM 10 BP5# DMSO 3 BP5# DMSO 3 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP5#-DMSO-3.fastq.gz fastq 69830864.0 722424.0 BP5# DMSO 3.fastq.gz 0:96.66 A:16195315;C:18820158;G:18512005;T:16303386;N:0 96       16195315 18820158 18512005 16303386 0 SRX25741569 SRS22381087 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33484 33484 SRR30280748 SRX25741568 SRS22381086 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPM 9 BP5# DMSO 2   strain:TU|isolate:49|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPM 9 BP5# DMSO 2 BP5# DMSO 2 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP5#-DMSO-2.fastq.gz fastq 164930364.0 1712837.0 BP5# DMSO 2.fastq.gz 0:96.29 A:38256270;C:44329270;G:44181612;T:38163212;N:0 96       38256270 44329270 44181612 38163212 0 SRX25741568 SRS22381086 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33485 33485 SRR30280749 SRX25741567 SRS22381085 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPM 8 BP5# DMSO 1   strain:TU|isolate:48|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPM 8 BP5# DMSO 1 BP5# DMSO 1 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP5#-DMSO-1.fastq.gz fastq 181332852.0 1769396.0 BP5# DMSO 1.fastq.gz 0:102.48 A:43111149;C:47723124;G:47703716;T:42794863;N:0 102       43111149 47723124 47703716 42794863 0 SRX25741567 SRS22381085 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33486 33486 SRR30280750 SRX25741566 SRS22381084 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPM 7 BP5# 7   strain:TU|isolate:47|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPM 7 BP5# 7 BP5# 7 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP5#-7.fastq.gz fastq 156354483.0 1499782.0 BP5# 7.fastq.gz 0:104.25 A:37138190;C:41308272;G:40976578;T:36931443;N:0 104       37138190 41308272 40976578 36931443 0 SRX25741566 SRS22381084 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33487 33487 SRR30280751 SRX25741565 SRS22381083 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPM 6 BP5# 6   strain:TU|isolate:46|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPM 6 BP5# 6 BP5# 6 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP5#-6.fastq.gz fastq 173968738.0 1651137.0 BP5# 6.fastq.gz 0:105.36 A:41303240;C:45813867;G:45637169;T:41214462;N:0 105       41303240 45813867 45637169 41214462 0 SRX25741565 SRS22381083 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33488 33488 SRR30280752 SRX25741564 SRS22381082 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPM 5 BP5# 5   strain:TU|isolate:45|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPM 5 BP5# 5 BP5# 5 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP5#-5.fastq.gz fastq 159018875.0 1527111.0 BP5# 5.fastq.gz 0:104.13 A:37684248;C:41887152;G:41787315;T:37660160;N:0 104       37684248 41887152 41787315 37660160 0 SRX25741564 SRS22381082 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33489 33489 SRR30280753 SRX25741563 SRS22381081 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPM 4 BP5# 4   strain:TU|isolate:44|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPM 4 BP5# 4 BP5# 4 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP5#-4.fastq.gz fastq 172581316.0 1672193.0 BP5# 4.fastq.gz 0:103.21 A:40735879;C:45609457;G:45531283;T:40704697;N:0 103       40735879 45609457 45531283 40704697 0 SRX25741563 SRS22381081 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33490 33490 SRR30280754 SRX25741562 SRS22381080 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPM 3 BP5# 3   strain:TU|isolate:43|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPM 3 BP5# 3 BP5# 3 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP5#-3.fastq.gz fastq 194293989.0 1881466.0 BP5# 3.fastq.gz 0:103.27 A:45699763;C:51658251;G:51051270;T:45884705;N:0 103       45699763 51658251 51051270 45884705 0 SRX25741562 SRS22381080 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33491 33491 SRR30280755 SRX25741561 SRS22381079 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPM 2 BP5# 2   strain:TU|isolate:42|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPM 2 BP5# 2 BP5# 2 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP5#-2.fastq.gz fastq 169428376.0 1621727.0 BP5# 2.fastq.gz 0:104.47 A:40092975;C:44761119;G:44430155;T:40144127;N:0 104       40092975 44761119 44430155 40144127 0 SRX25741561 SRS22381079 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33492 33492 SRR30280756 SRX25741560 SRS22381078 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPM 1 BP5# 1   strain:TU|isolate:41|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPM 1 BP5# 1 BP5# 1 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP5#-1.fastq.gz fastq 144606960.0 1448818.0 BP5# 1.fastq.gz 0:99.81 A:34224454;C:38193289;G:38174848;T:34014369;N:0 99       34224454 38193289 38174848 34014369 0 SRX25741560 SRS22381078 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33493 33493 SRR30280757 SRX25741559 SRS22381077 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPS 5 BP2# 5   strain:TU|isolate:5|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPS 5 BP2# 5 BP2# 5 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP2#-5.fastq.gz fastq 54004345.0 528826.0 BP2# 5.fastq.gz 0:102.12 A:12647240;C:14354167;G:14231898;T:12771040;N:0 102       12647240 14354167 14231898 12771040 0 SRX25741559 SRS22381077 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33494 33494 SRR30280758 SRX25741558 SRS22381076 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPG 10 BP4# DMSO 3   strain:TU|isolate:40|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPG 10 BP4# DMSO 3 BP4# DMSO 3 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP4#-DMSO-3.fastq.gz fastq 36465434.0 372286.0 BP4# DMSO 3.fastq.gz 0:97.95 A:8490297;C:9790740;G:9683118;T:8501279;N:0 97       8490297 9790740 9683118 8501279 0 SRX25741558 SRS22381076 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33495 33495 SRR30280759 SRX25741557 SRS22381075 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPG 9 BP4# DMSO 2   strain:TU|isolate:39|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPG 9 BP4# DMSO 2 BP4# DMSO 2 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP4#-DMSO-2.fastq.gz fastq 93830164.0 961498.0 BP4# DMSO 2.fastq.gz 0:97.59 A:21868926;C:25159102;G:25064131;T:21738005;N:0 97       21868926 25159102 25064131 21738005 0 SRX25741557 SRS22381075 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33496 33496 SRR30280760 SRX25741556 SRS22381074 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPG 8 BP4# DMSO 1   strain:TU|isolate:38|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPG 8 BP4# DMSO 1 BP4# DMSO 1 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP4#-DMSO-1.fastq.gz fastq 207441996.0 2016339.0 BP4# DMSO 1.fastq.gz 0:102.88 A:48915341;C:54837085;G:54776415;T:48913155;N:0 102       48915341 54837085 54776415 48913155 0 SRX25741556 SRS22381074 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33497 33497 SRR30280761 SRX25741555 SRS22381073 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPG 7 BP4# 7   strain:TU|isolate:37|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPG 7 BP4# 7 BP4# 7 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP4#-7.fastq.gz fastq 255678685.0 2484772.0 BP4# 7.fastq.gz 0:102.90 A:60397868;C:67633446;G:67278186;T:60369185;N:0 102       60397868 67633446 67278186 60369185 0 SRX25741555 SRS22381073 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33498 33498 SRR30280762 SRX25741554 SRS22381072 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPG 6 BP4# 6   strain:TU|isolate:36|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPG 6 BP4# 6 BP4# 6 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP4#-6.fastq.gz fastq 188125535.0 1822074.0 BP4# 6.fastq.gz 0:103.25 A:44693539;C:49396733;G:49369506;T:44665757;N:0 103       44693539 49396733 49369506 44665757 0 SRX25741554 SRS22381072 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33499 33499 SRR30280763 SRX25741553 SRS22381071 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPG 5 BP4# 5   strain:TU|isolate:35|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPG 5 BP4# 5 BP4# 5 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP4#-5.fastq.gz fastq 196156699.0 1945323.0 BP4# 5.fastq.gz 0:100.84 A:46353674;C:51900251;G:51633045;T:46269729;N:0 100       46353674 51900251 51633045 46269729 0 SRX25741553 SRS22381071 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33500 33500 SRR30280764 SRX25741552 SRS22381070 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPG 4 BP4# 4   strain:TU|isolate:34|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPG 4 BP4# 4 BP4# 4 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP4#-4.fastq.gz fastq 208993750.0 2025321.0 BP4# 4.fastq.gz 0:103.19 A:49362077;C:55404157;G:54798534;T:49428982;N:0 103       49362077 55404157 54798534 49428982 0 SRX25741552 SRS22381070 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33501 33501 SRR30280765 SRX25741551 SRS22381069 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPG 3 BP4# 3   strain:TU|isolate:33|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPG 3 BP4# 3 BP4# 3 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP4#-3.fastq.gz fastq 202784927.0 1991949.0 BP4# 3.fastq.gz 0:101.80 A:47939013;C:53597649;G:53349661;T:47898604;N:0 101       47939013 53597649 53349661 47898604 0 SRX25741551 SRS22381069 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33502 33502 SRR30280766 SRX25741550 SRS22381068 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPG 2 BP4# 2   strain:TU|isolate:32|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPG 2 BP4# 2 BP4# 2 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP4#-2.fastq.gz fastq 219988278.0 2234932.0 BP4# 2.fastq.gz 0:98.43 A:51797569;C:58514113;G:57965852;T:51710744;N:0 98       51797569 58514113 57965852 51710744 0 SRX25741550 SRS22381068 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33503 33503 SRR30280767 SRX25741549 SRS22381067 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPG 1 BP4# 1   strain:TU|isolate:31|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPG 1 BP4# 1 BP4# 1 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP4#-1.fastq.gz fastq 189677795.0 1882057.0 BP4# 1.fastq.gz 0:100.78 A:44788971;C:50182800;G:49981443;T:44724581;N:0 100       44788971 50182800 49981443 44724581 0 SRX25741549 SRS22381067 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33504 33504 SRR30280768 SRX25741548 SRS22381066 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPS 4 BP2# 4   strain:TU|isolate:4|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPS 4 BP2# 4 BP2# 4 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP2#-4.fastq.gz fastq 53747760.0 507303.0 BP2# 4.fastq.gz 0:105.95 A:12684975;C:14194468;G:14128107;T:12740210;N:0 105       12684975 14194468 14128107 12740210 0 SRX25741548 SRS22381066 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33505 33505 SRR30280769 SRX25741547 SRS22381065 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPF 10 BP3# DMSO 3   strain:TU|isolate:30|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPF 10 BP3# DMSO 3 BP3# DMSO 3 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP3#-DMSO-3.fastq.gz fastq 116330587.0 1173601.0 BP3# DMSO 3.fastq.gz 0:99.12 A:27347180;C:30698198;G:31018076;T:27267133;N:0 99       27347180 30698198 31018076 27267133 0 SRX25741547 SRS22381065 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33506 33506 SRR30280770 SRX25741546 SRS22381064 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPF 9 BP3# DMSO 2   strain:TU|isolate:29|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPF 9 BP3# DMSO 2 BP3# DMSO 2 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP3#-DMSO-2.fastq.gz fastq 73519676.0 743634.0 BP3# DMSO 2.fastq.gz 0:98.87 A:17229747;C:19443112;G:19611469;T:17235348;N:0 98       17229747 19443112 19611469 17235348 0 SRX25741546 SRS22381064 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33507 33507 SRR30280771 SRX25741545 SRS22381063 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPF 8 BP3# DMSO 1   strain:TU|isolate:28|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPF 8 BP3# DMSO 1 BP3# DMSO 1 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP3#-DMSO-1.fastq.gz fastq 255347833.0 2401083.0 BP3# DMSO 1.fastq.gz 0:106.35 A:61082865;C:67174427;G:66429786;T:60660755;N:0 106       61082865 67174427 66429786 60660755 0 SRX25741545 SRS22381063 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33508 33508 SRR30280772 SRX25741544 SRS22381062 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPF 7 BP3# 7   strain:TU|isolate:27|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPF 7 BP3# 7 BP3# 7 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP3#-7.fastq.gz fastq 58605409.0 547138.0 BP3# 7.fastq.gz 0:107.11 A:13947433;C:15493000;G:15274166;T:13890810;N:0 107       13947433 15493000 15274166 13890810 0 SRX25741544 SRS22381062 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures
33509 33509 SRR30280773 SRX25741543 SRS22381061 SRP527083 PRJNA1148320 Danio rerio Raw sequence reads PRJNA1148320 Whole Genome Sequencing Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives.       BPF 6 BP3# 6   strain:TU|isolate:26|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal                 BPF 6 BP3# 6 BP3# 6 Ampliseq sequecing     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP527083     BP3#-6.fastq.gz fastq 72949772.0 686281.0 BP3# 6.fastq.gz 0:106.30 A:17339914;C:19406958;G:19027530;T:17175370;N:0 106       17339914 19406958 19027530 17175370 0 SRX25741543 SRS22381061 SRA1949064 Shandong university|School and Hospital of Stomatology Shandong university                       B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   China 2024-08-17 Pharyngula Embryo Embryo Imprecise All anatomical structures

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;