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run_metadata

30 rows where experiment.library_layout = "SINGLE", experiment.library_selection = "Oligo-dT" and tissue_curation_coarse = "Undetermined"

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experiment.platform 3

devstage_curation_coarse 2

devstage_curation 2

tissue_curation_coarse 1

  • Undetermined · 30 ✖

tissue_curation 1

technology 1

experiment.library_strategy 1

experiment.library_source 1

experiment.library_selection 1

  • Oligo-dT · 30 ✖

experiment.library_layout 1

  • SINGLE · 30 ✖
Link rowid ▼ run.accession experiment.accession sample.accession study.accession bioproject study.title study.alias study.type study.abstract study.attributes study.PMIDs sample.description sample.title sample.alias sample.centername sample.attributes GEOsample.title GEOsample.dataprocessing GEOsample.source GEOsample.treatmentprotocol GEOsample.extractprotocol GEOsample.growthprotocol GEOsample.characteristics GEOsample.accession experiment.title experiment.alias experiment.library_name experiment.design_description experiment.library_construction_protocol experiment.attributes experiment.library_strategy experiment.library_source experiment.library_selection experiment.library_layout experiment.platform experiment.instrument_model experiment.spot_descriptor experiment.study_ref run.title run.attributes run.filename run.semantic_name run.total_bases run.total_spots run.alias run.read_lengths run.base_counts run.r1_length run.r2_length run.r3_length run.r4_length run.Acount run.Ccount run.Gcount run.Tcount run.Ncount run.experiment run.pool_member submission.accession submission.srasource submission.bioprojectsource seqdetective.n_mates seqdetective.mapping_rate.mate1 seqdetective.mapping_rate.mate2 seqdetective.nofeature_rate.mate1 seqdetective.nofeature_rate.mate2 seqdetective.sparsity.mate1 seqdetective.sparsity.mate2 seqdetective.pos_strand_rate.mate1 seqdetective.pos_strand_rate.mate2 seqdetective.readlen.mate1 seqdetective.readlen.mate2 seqdetective.judgement.mate1 seqdetective.judgement.mate2 seqdetective.judgement.reason platform_family instrument_generation read_bias selection_class prep_kit sc_or_bulk tech_class technology tech_variant submission.bioprojectsource.country earliest_date devstage_curation devstage_curation_coarse tissue_curation tissue_curation_coarse
9918 9918 ERR5059480 ERX4865549 ERS5523939 ERP122761 PRJEB39265 RNA dynamics during zebrafish development ena-STUDY-CENTER FOR GENOMIC REGULATION (CRG)-06-07-2020-15:41:43:771-1183 Other RNA dynamics during early zebrafish development ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05     aAM 6h rep1 JD AD30 PRPN1970901   ENA FIRST PUBLIC:2022 07 05T12:06:33Z|organism:Danio rerio|ENA LAST UPDATE:2022 07 05T12:06:33Z|scientific name:Danio rerio|common name:zebrafish|ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05                 PromethION sequencing ena EXPERIMENT CENTER FOR GENOMIC REGULATION CRG 09 01 2021 19:50:56:183 1 unspecified 1     RNA-Seq TRANSCRIPTOMIC Oligo-dT SINGLE OXFORD_NANOPORE PromethION   ERP122761 PromethION sequencing ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05 JD-AD30_PRPN197090.tar.gz nanopore 3739882337.0 3148027.0 ena RUN CENTER FOR GENOMIC REGULATION CRG 09 01 2021 19:50:56:183 1 0:1188.01 A:1054501690;C:834193435;G:847423060;T:1003764152;N:0 1188       1054501690 834193435 847423060 1003764152 0 ERX4865549 ERS5523939 ERA3206712 CENTER FOR GENOMIC REGULATION (CRG)|European Nucleotide Archive CENTER FOR GENOMIC REGULATION (CRG)                       B   usable mapping rate ont ont unknown poly_a unknown bulk unknown unknown   Spain 2022-07-05 Undetermined Undetermined Undetermined Undetermined
9920 9920 ERR4330695 ERX4277529 ERS4811113 ERP122761 PRJEB39265 RNA dynamics during zebrafish development ena-STUDY-CENTER FOR GENOMIC REGULATION (CRG)-06-07-2020-15:41:43:771-1183 Other RNA dynamics during early zebrafish development ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05   WT 2h rep1 WT 2h rep1 SAMEA7050483 CENTER FOR GENOMIC REGULATION (CRG) ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05|External Id:SAMEA7050483|INSDC center alias:CENTER FOR GENOMIC REGULATION CRG|INSDC center name:CENTER FOR GENOMIC REGULATION CRG|INSDC first public:2022 07 05T12:06:22Z|INSDC last update:2022 07 05T12:06:22Z|INSDC status:public|Submitter Id:JD B2 PDBN005727|common name:zebrafish|sample name:JD B2 PDBN005727                 PromethION sequencing ena EXPERIMENT CENTER FOR GENOMIC REGULATION CRG 09 07 2020 13:48:01:100 1 unspecified 1     RNA-Seq TRANSCRIPTOMIC Oligo-dT SINGLE OXFORD_NANOPORE PromethION   ERP122761 PromethION sequencing ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05 JD-B2_PDBN005727.tar.gz fastq     ena RUN CENTER FOR GENOMIC REGULATION CRG 09 07 2020 13:48:01:100 1                       ERX4277529   ERA2767154 CENTER FOR GENOMIC REGULATION (CRG)|European Nucleotide Archive CENTER FOR GENOMIC REGULATION (CRG)                             ont ont unknown poly_a unknown bulk unknown unknown   Spain 2022-07-05 Undetermined Undetermined Undetermined Undetermined
9921 9921 ERR4327134 ERX4273968 ERS4808634 ERP122761 PRJEB39265 RNA dynamics during zebrafish development ena-STUDY-CENTER FOR GENOMIC REGULATION (CRG)-06-07-2020-15:41:43:771-1183 Other RNA dynamics during early zebrafish development ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05   WT 4h rep2 WT 4h rep2 SAMEA7048000 CENTER FOR GENOMIC REGULATION (CRG) ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05|External Id:SAMEA7048000|INSDC center alias:CENTER FOR GENOMIC REGULATION CRG|INSDC center name:CENTER FOR GENOMIC REGULATION CRG|INSDC first public:2022 07 05T12:06:22Z|INSDC last update:2022 07 05T12:06:22Z|INSDC status:public|Submitter Id:JD AM39 PDBN042841|common name:zebrafish|sample name:JD AM39 PDBN042841                 PromethION sequencing ena EXPERIMENT CENTER FOR GENOMIC REGULATION CRG 07 07 2020 16:36:02:084 1 unspecified 1     RNA-Seq TRANSCRIPTOMIC Oligo-dT SINGLE OXFORD_NANOPORE PromethION   ERP122761 PromethION sequencing ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05 JD-AM39_PDBN042841.tar.gz nanopore 719646261.0 897768.0 ena RUN CENTER FOR GENOMIC REGULATION CRG 07 07 2020 16:36:02:084 1 0:801.59 A:210217908;C:152963718;G:157393834;T:199070801;N:0 801       210217908 152963718 157393834 199070801 0 ERX4273968 ERS4808634 ERA2764800 CENTER FOR GENOMIC REGULATION (CRG)|European Nucleotide Archive CENTER FOR GENOMIC REGULATION (CRG)                       T   under 1.2% mapping rate ont ont unknown poly_a unknown bulk unknown unknown   Spain 2022-07-05 Undetermined Undetermined Undetermined Undetermined
9922 9922 ERR4330696 ERX4277530 ERS4811114 ERP122761 PRJEB39265 RNA dynamics during zebrafish development ena-STUDY-CENTER FOR GENOMIC REGULATION (CRG)-06-07-2020-15:41:43:771-1183 Other RNA dynamics during early zebrafish development ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05   WT 4h rep1 WT 4h rep1 JD C3 PDBN006177   ENA FIRST PUBLIC:2022 07 05T12:06:22Z|organism:Danio rerio|ENA LAST UPDATE:2022 07 05T12:06:22Z|scientific name:Danio rerio|common name:zebrafish|ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05                 PromethION sequencing ena EXPERIMENT CENTER FOR GENOMIC REGULATION CRG 09 07 2020 13:48:01:100 2 unspecified 1     RNA-Seq TRANSCRIPTOMIC Oligo-dT SINGLE OXFORD_NANOPORE PromethION   ERP122761 PromethION sequencing ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05 JD-C3_PDBN006177.tar.gz nanopore 4240799932.0 4331689.0 ena RUN CENTER FOR GENOMIC REGULATION CRG 09 07 2020 13:48:01:100 2 0:979.02 A:1229803846;C:914476674;G:943703560;T:1152815852;N:0 979       1229803846 914476674 943703560 1152815852 0 ERX4277530 ERS4811114 ERA2767154 CENTER FOR GENOMIC REGULATION (CRG)|European Nucleotide Archive CENTER FOR GENOMIC REGULATION (CRG)                       B   usable mapping rate ont ont unknown poly_a unknown bulk unknown unknown   Spain 2022-07-05 Undetermined Undetermined Undetermined Undetermined
9923 9923 ERR4327135 ERX4273969 ERS4808635 ERP122761 PRJEB39265 RNA dynamics during zebrafish development ena-STUDY-CENTER FOR GENOMIC REGULATION (CRG)-06-07-2020-15:41:43:771-1183 Other RNA dynamics during early zebrafish development ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05   WT 6h rep1 WT 6h rep1 JD AC29 PDBN024889   ENA FIRST PUBLIC:2022 07 05T12:06:22Z|organism:Danio rerio|ENA LAST UPDATE:2022 07 05T12:06:22Z|scientific name:Danio rerio|common name:zebrafish|ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05                 PromethION sequencing ena EXPERIMENT CENTER FOR GENOMIC REGULATION CRG 07 07 2020 16:36:02:084 2 unspecified 1     RNA-Seq TRANSCRIPTOMIC Oligo-dT SINGLE OXFORD_NANOPORE PromethION   ERP122761 PromethION sequencing ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05 JD-AC29_PDBN024889.tar.gz nanopore 1900324756.0 2013035.0 ena RUN CENTER FOR GENOMIC REGULATION CRG 07 07 2020 16:36:02:084 2 0:944.01 A:549431032;C:411510218;G:422103800;T:517279706;N:0 944       549431032 411510218 422103800 517279706 0 ERX4273969 ERS4808635 ERA2764800 CENTER FOR GENOMIC REGULATION (CRG)|European Nucleotide Archive CENTER FOR GENOMIC REGULATION (CRG)                       T   long read ont ont unknown poly_a unknown bulk unknown unknown   Spain 2022-07-05 Undetermined Undetermined Undetermined Undetermined
9924 9924 ERR4326350 ERX4273208 ERS4808398 ERP122761 PRJEB39265 RNA dynamics during zebrafish development ena-STUDY-CENTER FOR GENOMIC REGULATION (CRG)-06-07-2020-15:41:43:771-1183 Other RNA dynamics during early zebrafish development ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05   430 LNA 6h rep1 430 LNA 6h rep1 SAMEA7047764 CENTER FOR GENOMIC REGULATION (CRG) ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05|External Id:SAMEA7047764|INSDC center alias:CENTER FOR GENOMIC REGULATION CRG|INSDC center name:CENTER FOR GENOMIC REGULATION CRG|INSDC first public:2022 07 05T12:06:22Z|INSDC last update:2022 07 05T12:06:22Z|INSDC status:public|Submitter Id:JD H8 PDBN059569|common name:zebrafish|sample name:JD H8 PDBN059569                 PromethION sequencing ena EXPERIMENT CENTER FOR GENOMIC REGULATION CRG 07 07 2020 10:25:22:388 1 unspecified 1     RNA-Seq TRANSCRIPTOMIC Oligo-dT SINGLE OXFORD_NANOPORE PromethION   ERP122761 PromethION sequencing ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05 JD-H8_PDBN059569.tar.gz nanopore 722817654.0 657296.0 ena RUN CENTER FOR GENOMIC REGULATION CRG 07 07 2020 10:25:22:388 1 0:1099.68 A:206996491;C:157022109;G:155085437;T:203713617;N:0 1099       206996491 157022109 155085437 203713617 0 ERX4273208 ERS4808398 ERA2764399 CENTER FOR GENOMIC REGULATION (CRG)|European Nucleotide Archive CENTER FOR GENOMIC REGULATION (CRG)                       T   under 1.2% mapping rate ont ont unknown poly_a unknown bulk unknown unknown   Spain 2022-07-05 Undetermined Undetermined Undetermined Undetermined
9925 9925 ERR4335436 ERX4282181 ERS4818366 ERP122761 PRJEB39265 RNA dynamics during zebrafish development ena-STUDY-CENTER FOR GENOMIC REGULATION (CRG)-06-07-2020-15:41:43:771-1183 Other RNA dynamics during early zebrafish development ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05   WT 6h rep2 WT 6h rep2 JD W23 PRPN039928   ENA FIRST PUBLIC:2022 07 05T12:06:24Z|organism:Danio rerio|ENA LAST UPDATE:2022 07 05T12:06:24Z|scientific name:Danio rerio|common name:zebrafish|ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05                 PromethION sequencing ena EXPERIMENT CENTER FOR GENOMIC REGULATION CRG 13 07 2020 18:19:23:456 1 unspecified 1     RNA-Seq TRANSCRIPTOMIC Oligo-dT SINGLE OXFORD_NANOPORE PromethION   ERP122761 PromethION sequencing ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05 JD-W23_PRPN039928.tar.gz nanopore 1268761319.0 1385621.0 ena RUN CENTER FOR GENOMIC REGULATION CRG 13 07 2020 18:19:23:457 1 0:915.66 A:366823862;C:275507684;G:284634548;T:341795225;N:0 915       366823862 275507684 284634548 341795225 0 ERX4282181 ERS4818366 ERA2769006 CENTER FOR GENOMIC REGULATION (CRG)|European Nucleotide Archive CENTER FOR GENOMIC REGULATION (CRG)                       T   under 1.2% mapping rate ont ont unknown poly_a unknown bulk unknown unknown   Spain 2022-07-05 Undetermined Undetermined Undetermined Undetermined
9926 9926 ERR4321680 ERX4268538 ERS4808125 ERP122761 PRJEB39265 RNA dynamics during zebrafish development ena-STUDY-CENTER FOR GENOMIC REGULATION (CRG)-06-07-2020-15:41:43:771-1183 Other RNA dynamics during early zebrafish development ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05   WT 0h rep1 WT 0h rep1 JD A1 GDDN003032   ENA FIRST PUBLIC:2022 07 05T12:06:22Z|organism:Danio rerio|ENA LAST UPDATE:2022 07 05T12:06:22Z|scientific name:Danio rerio|common name:zebrafish|ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05                 GridION sequencing ena EXPERIMENT CENTER FOR GENOMIC REGULATION CRG 06 07 2020 17:45:26:236 1 unspecified 1     RNA-Seq TRANSCRIPTOMIC Oligo-dT SINGLE OXFORD_NANOPORE GridION   ERP122761 GridION sequencing ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05 JD-A1_GDDN003032.tar.gz nanopore 753417826.0 698774.0 ena RUN CENTER FOR GENOMIC REGULATION CRG 06 07 2020 17:45:26:236 1 0:1078.20 A:214525685;C:165042952;G:171160615;T:202688574;N:0 1078       214525685 165042952 171160615 202688574 0 ERX4268538 ERS4808125 ERA2763718 CENTER FOR GENOMIC REGULATION (CRG)|European Nucleotide Archive CENTER FOR GENOMIC REGULATION (CRG)                       T   long read ont ont unknown poly_a unknown bulk unknown unknown   Spain 2022-07-05 Undetermined Undetermined Undetermined Undetermined
66964 66964 SRR16965143 SRX13156592 SRS11088496 SRP346547 PRJNA780808 transcriptomics of carbendazim and enrofloxacin on zebrafish embryos PRJNA780808 Other reveal a interaction between ENF and CAR on metabolic regulation during development         1mix   strain:Tu|isolate:N/A|breed:N/A|cultivar:N/A|ecotype:N/A|age:10 96hpf|dev stage:larvae|sex:male and female|tissue:larvae|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio :mixture group mix 1 mix 1 96hpf zebrafish larvae mixture group     RNA-Seq TRANSCRIPTOMIC Oligo-dT SINGLE BGISEQ BGISEQ-500   SRP346547     mix2_1_2.fq.gz fastq 3313823250.0 22092155.0 mix2 1 2.fq.gz 0:0 1:150 A:895726357;C:763402657;G:745765587;T:908922686;N:5963 0 150     895726357 763402657 745765587 908922686 5963 SRX13156592 SRS11088496 SRA1329868 China Agricultural University|College of animal science and technology China Agricultural University 1 0.93604   0.10794   0.65587   0.47956   150   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   China 2021-11-17 Larval Larval Undetermined Undetermined
66965 66965 SRR16965144 SRX13156591 SRS11088495 SRP346547 PRJNA780808 transcriptomics of carbendazim and enrofloxacin on zebrafish embryos PRJNA780808 Other reveal a interaction between ENF and CAR on metabolic regulation during development         3enf   strain:Tu|isolate:N/A|breed:N/A|cultivar:N/A|ecotype:N/A|age:9 96hpf|dev stage:larvae|sex:male and female|tissue:larvae|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio :enrofloxacin group enf 3 enf 3 96hpf zebrafish larvae enrofloxacin group     RNA-Seq TRANSCRIPTOMIC Oligo-dT SINGLE BGISEQ BGISEQ-500   SRP346547     enf_3.fq.gz fastq 3304972350.0 22033149.0 enf 3.fq.gz 0:150 1:0 A:899427202;C:745999066;G:759917309;T:899625137;N:3636 150 0     899427202 745999066 759917309 899625137 3636 SRX13156591 SRS11088495 SRA1329868 China Agricultural University|College of animal science and technology China Agricultural University 1 0.94353   0.10795   0.66212   0.47773   150   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   China 2021-11-17 Larval Larval Undetermined Undetermined
66967 66967 SRR16965146 SRX13156589 SRS11088492 SRP346547 PRJNA780808 transcriptomics of carbendazim and enrofloxacin on zebrafish embryos PRJNA780808 Other reveal a interaction between ENF and CAR on metabolic regulation during development         3car   strain:Tu|isolate:N/A|breed:N/A|cultivar:N/A|ecotype:N/A|age:6 96hpf|dev stage:larvae|sex:male and female|tissue:larvae|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio :carbendazim group car 3 car 3 96hpf zebrafish larvae carbendazim group     RNA-Seq TRANSCRIPTOMIC Oligo-dT SINGLE BGISEQ BGISEQ-500   SRP346547     car_3_1.fq.gz fastq 3335622150.0 22237481.0 car 3 1.fq.gz 0:150 1:0 A:853229671;C:807433601;G:820478265;T:854475092;N:5521 150 0     853229671 807433601 820478265 854475092 5521 SRX13156589 SRS11088492 SRA1329868 China Agricultural University|College of animal science and technology China Agricultural University 1 0.96567   0.03093   0.70997   0.47751   150   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   China 2021-11-17 Larval Larval Undetermined Undetermined
66968 66968 SRR16965147 SRX13156588 SRS11088494 SRP346547 PRJNA780808 transcriptomics of carbendazim and enrofloxacin on zebrafish embryos PRJNA780808 Other reveal a interaction between ENF and CAR on metabolic regulation during development         1car   strain:Tu|isolate:N/A|breed:N/A|cultivar:N/A|ecotype:N/A|age:4 96hpf|dev stage:larvae|sex:male and female|tissue:larvae|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio :carbendazim group car 1 car 1 96hpf zebrafish larvae carbendazim group     RNA-Seq TRANSCRIPTOMIC Oligo-dT SINGLE BGISEQ BGISEQ-500   SRP346547     car_1_1.fq.gz fastq 3378056400.0 22520376.0 car 1 1.fq.gz 0:150 1:0 A:886009175;C:795203398;G:809447342;T:887390300;N:6185 150 0     886009175 795203398 809447342 887390300 6185 SRX13156588 SRS11088494 SRA1329868 China Agricultural University|College of animal science and technology China Agricultural University 1 0.95701   0.05956   0.67836   0.4884   150   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   China 2021-11-17 Larval Larval Undetermined Undetermined
66969 66969 SRR16965148 SRX13156587 SRS11088491 SRP346547 PRJNA780808 transcriptomics of carbendazim and enrofloxacin on zebrafish embryos PRJNA780808 Other reveal a interaction between ENF and CAR on metabolic regulation during development         3con   strain:Tu|isolate:N/A|breed:N/A|cultivar:N/A|ecotype:N/A|age:3 96hpf|dev stage:larvae|sex:male and female|tissue:larvae|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio :control group con 3 con 3 96hpf zebrafish larvae control group     RNA-Seq TRANSCRIPTOMIC Oligo-dT SINGLE BGISEQ BGISEQ-500   SRP346547     con_3_2.fq.gz fastq 3359054500.0 33590545.0 con 3 2.fq.gz 0:100 1:0 A:914533337;C:755914202;G:773676246;T:914930715;N:0 100 0     914533337 755914202 773676246 914930715 0 SRX13156587 SRS11088491 SRA1329868 China Agricultural University|College of animal science and technology China Agricultural University 1 0.95076   0.10478   0.65646   0.49594   100   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   China 2021-11-17 Larval Larval Undetermined Undetermined
66970 66970 SRR16965149 SRX13156586 SRS11088489 SRP346547 PRJNA780808 transcriptomics of carbendazim and enrofloxacin on zebrafish embryos PRJNA780808 Other reveal a interaction between ENF and CAR on metabolic regulation during development         3mix   strain:Tu|isolate:N/A|breed:N/A|cultivar:N/A|ecotype:N/A|age:12 96hpf|dev stage:larvae|sex:male and female|tissue:larvae|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio :mixture group mix 3 mix 3 96hpf zebrafish larvae mixture group     RNA-Seq TRANSCRIPTOMIC Oligo-dT SINGLE BGISEQ BGISEQ-500   SRP346547     mix2_3_1.fq.gz fastq 3362094000.0 33620940.0 mix2 3 1.fq.gz 0:100 1:0 A:916124379;C:755910593;G:768246534;T:921812494;N:0 100 0     916124379 755910593 768246534 921812494 0 SRX13156586 SRS11088489 SRA1329868 China Agricultural University|College of animal science and technology China Agricultural University 1 0.94894   0.10416   0.65342   0.49475   100   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   China 2021-11-17 Larval Larval Undetermined Undetermined
66972 66972 SRR16965151 SRX13156584 SRS11088488 SRP346547 PRJNA780808 transcriptomics of carbendazim and enrofloxacin on zebrafish embryos PRJNA780808 Other reveal a interaction between ENF and CAR on metabolic regulation during development         2con   strain:Tu|isolate:N/A|breed:N/A|cultivar:N/A|ecotype:N/A|age:2 96hpf|dev stage:larvae|sex:male and female|tissue:larvae|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio :control group con 2 con 2 96hpf zebrafish larvae control group     RNA-Seq TRANSCRIPTOMIC Oligo-dT SINGLE BGISEQ BGISEQ-500   SRP346547   loader:fastq load.py con_2_2.fq fastq 3324287550.0 22161917.0 con 2 2.fq.gz 0:150 A:848766265;C:812477645;G:798995610;T:864040426;N:7604 150       848766265 812477645 798995610 864040426 7604 SRX13156584 SRS11088488 SRA1329868 China Agricultural University|College of animal science and technology China Agricultural University 1 0.95546   0.03524   0.70027   0.48649   150   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   China 2021-11-22 Larval Larval Undetermined Undetermined
66973 66973 SRR16965152 SRX13156583 SRS11088487 SRP346547 PRJNA780808 transcriptomics of carbendazim and enrofloxacin on zebrafish embryos PRJNA780808 Other reveal a interaction between ENF and CAR on metabolic regulation during development         1con   strain:Tu|isolate:N/A|breed:N/A|cultivar:N/A|ecotype:N/A|age:1 96hpf|dev stage:larvae|sex:male and female|tissue:larvae|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio :control group con 1 con 1 96hpf zebrafish larvae control group     RNA-Seq TRANSCRIPTOMIC Oligo-dT SINGLE BGISEQ BGISEQ-500   SRP346547   loader:fastq load.py con_1_1.fq fastq 3330724500.0 22204830.0 con 1 1.fq.gz 0:150 A:896812508;C:762246067;G:774062043;T:897597946;N:5936 150       896812508 762246067 774062043 897597946 5936 SRX13156583 SRS11088487 SRA1329868 China Agricultural University|College of animal science and technology China Agricultural University 1 0.94926   0.08711   0.66789   0.48628   150   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   China 2021-11-22 Larval Larval Undetermined Undetermined
66975 66975 SRR16959539 SRX13151073 SRS11083379 SRP346418 PRJNA780940 transcriptomics of difenoconazole and dimethomorph on zebrafish embryos PRJNA780940 Other Difenoconazole DIF and dimethomorph DIM are widely used pesticides frequently detected together in environmental samples so the deleterious effects of combined exposure warrant detailed examination. In this study the individual and combined effects of DIM and DIF on conventional developmental parameters hatch rate deformity rate lethality and gene expression were measured in embryonic zebrafish. Both DIF and DIM interfered with normal zebrafish embryo development and the most sensitive toxicity index for both was 96 hpf deformity rate BMDL10 values of 0.30 and 1.10 mg/L respectively. The combination of DIF and DIM had mainly synergistic deleterious effects on 96 hpf deformity and mortality rates. Transcriptome analysis showed that these compounds markedly downregulated expression of mcm family genes cdk1 and cdc20 thereby potentially disrupting DNA replication and cell cycle progression. Enhanced surveillance for this pesticide combination is recommended as simultaneous environmental exposure may be substantially more harmful than exposure to either compound alone.         2dim   strain:Tu|isolate:N/A|breed:N/A|cultivar:N/A|ecotype:N/A|age:8 96h|dev stage:larvae|sex:male and female|tissue:larvae|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : dimethomorph group dim 2 dim 2 The final library was amplified with phi29 to make DNA nanoballs DNB with more than 300 copies of one molecular.     RNA-Seq TRANSCRIPTOMIC Oligo-dT SINGLE BGISEQ BGISEQ-500   SRP346418     dim_2_1.fq.gz fastq 3344257500.0 22295050.0 dim 2 1.fq.gz 0:150 1:0 A:895700119;C:767415749;G:784994320;T:896143585;N:3727 150 0     895700119 767415749 784994320 896143585 3727 SRX13151073 SRS11083379 SRA1330365 China Agricultural University|College of animal science and technology China Agricultural University 1 0.9497   0.08418   0.66352   0.49341   150   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   China 2021-11-16 Larval Larval Undetermined Undetermined
66976 66976 SRR16959540 SRX13151072 SRS11083378 SRP346418 PRJNA780940 transcriptomics of difenoconazole and dimethomorph on zebrafish embryos PRJNA780940 Other Difenoconazole DIF and dimethomorph DIM are widely used pesticides frequently detected together in environmental samples so the deleterious effects of combined exposure warrant detailed examination. In this study the individual and combined effects of DIM and DIF on conventional developmental parameters hatch rate deformity rate lethality and gene expression were measured in embryonic zebrafish. Both DIF and DIM interfered with normal zebrafish embryo development and the most sensitive toxicity index for both was 96 hpf deformity rate BMDL10 values of 0.30 and 1.10 mg/L respectively. The combination of DIF and DIM had mainly synergistic deleterious effects on 96 hpf deformity and mortality rates. Transcriptome analysis showed that these compounds markedly downregulated expression of mcm family genes cdk1 and cdc20 thereby potentially disrupting DNA replication and cell cycle progression. Enhanced surveillance for this pesticide combination is recommended as simultaneous environmental exposure may be substantially more harmful than exposure to either compound alone.         1dim   strain:Tu|isolate:N/A|breed:N/A|cultivar:N/A|ecotype:N/A|age:7 96h|dev stage:larvae|sex:male and female|tissue:larvae|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : dimethomorph group dim 1 dim 1 The final library was amplified with phi29 to make DNA nanoballs DNB with more than 300 copies of one molecular.     RNA-Seq TRANSCRIPTOMIC Oligo-dT SINGLE BGISEQ BGISEQ-500   SRP346418     dim_1_1.fq.gz fastq 3318812250.0 22125415.0 dim 1 1.fq.gz 0:150 1:0 A:908481293;C:742787936;G:755930542;T:911608821;N:3658 150 0     908481293 742787936 755930542 911608821 3658 SRX13151072 SRS11083378 SRA1330365 China Agricultural University|College of animal science and technology China Agricultural University 1 0.94211   0.11824   0.65344   0.47716   150   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   China 2021-11-16 Larval Larval Undetermined Undetermined
66977 66977 SRR16959541 SRX13151071 SRS11083377 SRP346418 PRJNA780940 transcriptomics of difenoconazole and dimethomorph on zebrafish embryos PRJNA780940 Other Difenoconazole DIF and dimethomorph DIM are widely used pesticides frequently detected together in environmental samples so the deleterious effects of combined exposure warrant detailed examination. In this study the individual and combined effects of DIM and DIF on conventional developmental parameters hatch rate deformity rate lethality and gene expression were measured in embryonic zebrafish. Both DIF and DIM interfered with normal zebrafish embryo development and the most sensitive toxicity index for both was 96 hpf deformity rate BMDL10 values of 0.30 and 1.10 mg/L respectively. The combination of DIF and DIM had mainly synergistic deleterious effects on 96 hpf deformity and mortality rates. Transcriptome analysis showed that these compounds markedly downregulated expression of mcm family genes cdk1 and cdc20 thereby potentially disrupting DNA replication and cell cycle progression. Enhanced surveillance for this pesticide combination is recommended as simultaneous environmental exposure may be substantially more harmful than exposure to either compound alone.         3dif   strain:Tu|isolate:N/A|breed:N/A|cultivar:N/A|ecotype:N/A|age:6 96h|dev stage:larvae|sex:male and female|tissue:larvae|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : difenoconazole group dif 3 dif 3 The final library was amplified with phi29 to make DNA nanoballs DNB with more than 300 copies of one molecular.     RNA-Seq TRANSCRIPTOMIC Oligo-dT SINGLE BGISEQ BGISEQ-500   SRP346418     dif_3_1.fq.gz fastq 3318453000.0 22123020.0 dif 3 1.fq.gz 0:150 1:0 A:893975607;C:758489621;G:772391705;T:893592335;N:3732 150 0     893975607 758489621 772391705 893592335 3732 SRX13151071 SRS11083377 SRA1330365 China Agricultural University|College of animal science and technology China Agricultural University 1 0.94838   0.08393   0.66543   0.4818   150   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   China 2021-11-16 Larval Larval Undetermined Undetermined
66978 66978 SRR16959542 SRX13151070 SRS11083376 SRP346418 PRJNA780940 transcriptomics of difenoconazole and dimethomorph on zebrafish embryos PRJNA780940 Other Difenoconazole DIF and dimethomorph DIM are widely used pesticides frequently detected together in environmental samples so the deleterious effects of combined exposure warrant detailed examination. In this study the individual and combined effects of DIM and DIF on conventional developmental parameters hatch rate deformity rate lethality and gene expression were measured in embryonic zebrafish. Both DIF and DIM interfered with normal zebrafish embryo development and the most sensitive toxicity index for both was 96 hpf deformity rate BMDL10 values of 0.30 and 1.10 mg/L respectively. The combination of DIF and DIM had mainly synergistic deleterious effects on 96 hpf deformity and mortality rates. Transcriptome analysis showed that these compounds markedly downregulated expression of mcm family genes cdk1 and cdc20 thereby potentially disrupting DNA replication and cell cycle progression. Enhanced surveillance for this pesticide combination is recommended as simultaneous environmental exposure may be substantially more harmful than exposure to either compound alone.         2dif   strain:Tu|isolate:N/A|breed:N/A|cultivar:N/A|ecotype:N/A|age:5 96h|dev stage:larvae|sex:male and female|tissue:larvae|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : difenoconazole group dif 2 dif 2 The final library was amplified with phi29 to make DNA nanoballs DNB with more than 300 copies of one molecular.     RNA-Seq TRANSCRIPTOMIC Oligo-dT SINGLE BGISEQ BGISEQ-500   SRP346418     dif_2_2.fq.gz fastq 3304972350.0 22033149.0 dif 2 2.fq.gz 0:0 1:150 A:890456734;C:764917766;G:744757536;T:904833787;N:6527 0 150     890456734 764917766 744757536 904833787 6527 SRX13151070 SRS11083376 SRA1330365 China Agricultural University|College of animal science and technology China Agricultural University 1 0.93514   0.107   0.6633   0.47599   150   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   China 2021-11-16 Larval Larval Undetermined Undetermined
66979 66979 SRR16959543 SRX13151069 SRS11083375 SRP346418 PRJNA780940 transcriptomics of difenoconazole and dimethomorph on zebrafish embryos PRJNA780940 Other Difenoconazole DIF and dimethomorph DIM are widely used pesticides frequently detected together in environmental samples so the deleterious effects of combined exposure warrant detailed examination. In this study the individual and combined effects of DIM and DIF on conventional developmental parameters hatch rate deformity rate lethality and gene expression were measured in embryonic zebrafish. Both DIF and DIM interfered with normal zebrafish embryo development and the most sensitive toxicity index for both was 96 hpf deformity rate BMDL10 values of 0.30 and 1.10 mg/L respectively. The combination of DIF and DIM had mainly synergistic deleterious effects on 96 hpf deformity and mortality rates. Transcriptome analysis showed that these compounds markedly downregulated expression of mcm family genes cdk1 and cdc20 thereby potentially disrupting DNA replication and cell cycle progression. Enhanced surveillance for this pesticide combination is recommended as simultaneous environmental exposure may be substantially more harmful than exposure to either compound alone.         1dif   strain:Tu|isolate:N/A|breed:N/A|cultivar:N/A|ecotype:N/A|age:4 96h|dev stage:larvae|sex:male and female|tissue:larvae|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : difenoconazole group dif 1 dif 1 The final library was amplified with phi29 to make DNA nanoballs DNB with more than 300 copies of one molecular.     RNA-Seq TRANSCRIPTOMIC Oligo-dT SINGLE BGISEQ BGISEQ-500   SRP346418     dif_1_1.fq.gz fastq 3295443900.0 21969626.0 dif 1 1.fq.gz 0:150 1:0 A:887936493;C:751636494;G:765508757;T:890358629;N:3527 150 0     887936493 751636494 765508757 890358629 3527 SRX13151069 SRS11083375 SRA1330365 China Agricultural University|College of animal science and technology China Agricultural University 1 0.94623   0.09138   0.66478   0.4828   150   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   China 2021-11-16 Larval Larval Undetermined Undetermined
66980 66980 SRR16959544 SRX13151068 SRS11083374 SRP346418 PRJNA780940 transcriptomics of difenoconazole and dimethomorph on zebrafish embryos PRJNA780940 Other Difenoconazole DIF and dimethomorph DIM are widely used pesticides frequently detected together in environmental samples so the deleterious effects of combined exposure warrant detailed examination. In this study the individual and combined effects of DIM and DIF on conventional developmental parameters hatch rate deformity rate lethality and gene expression were measured in embryonic zebrafish. Both DIF and DIM interfered with normal zebrafish embryo development and the most sensitive toxicity index for both was 96 hpf deformity rate BMDL10 values of 0.30 and 1.10 mg/L respectively. The combination of DIF and DIM had mainly synergistic deleterious effects on 96 hpf deformity and mortality rates. Transcriptome analysis showed that these compounds markedly downregulated expression of mcm family genes cdk1 and cdc20 thereby potentially disrupting DNA replication and cell cycle progression. Enhanced surveillance for this pesticide combination is recommended as simultaneous environmental exposure may be substantially more harmful than exposure to either compound alone.         3+con   strain:Tu|isolate:N/A|breed:N/A|cultivar:N/A|ecotype:N/A|age:3 96h|dev stage:larvae|sex:male and female|tissue:larvae|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : control group con 3 con 3 The final library was amplified with phi29 to make DNA nanoballs DNB with more than 300 copies of one molecular.     RNA-Seq TRANSCRIPTOMIC Oligo-dT SINGLE BGISEQ BGISEQ-500   SRP346418     con_3_1.fq.gz fastq 3306406800.0 22042712.0 con 3 1.fq.gz 0:150 1:0 A:872740236;C:773482184;G:788334419;T:871846539;N:3422 150 0     872740236 773482184 788334419 871846539 3422 SRX13151068 SRS11083374 SRA1330365 China Agricultural University|College of animal science and technology China Agricultural University 1 0.95458   0.06103   0.67409   0.48439   150   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   China 2021-11-16 Larval Larval Undetermined Undetermined
66982 66982 SRR16959546 SRX13151066 SRS11083372 SRP346418 PRJNA780940 transcriptomics of difenoconazole and dimethomorph on zebrafish embryos PRJNA780940 Other Difenoconazole DIF and dimethomorph DIM are widely used pesticides frequently detected together in environmental samples so the deleterious effects of combined exposure warrant detailed examination. In this study the individual and combined effects of DIM and DIF on conventional developmental parameters hatch rate deformity rate lethality and gene expression were measured in embryonic zebrafish. Both DIF and DIM interfered with normal zebrafish embryo development and the most sensitive toxicity index for both was 96 hpf deformity rate BMDL10 values of 0.30 and 1.10 mg/L respectively. The combination of DIF and DIM had mainly synergistic deleterious effects on 96 hpf deformity and mortality rates. Transcriptome analysis showed that these compounds markedly downregulated expression of mcm family genes cdk1 and cdc20 thereby potentially disrupting DNA replication and cell cycle progression. Enhanced surveillance for this pesticide combination is recommended as simultaneous environmental exposure may be substantially more harmful than exposure to either compound alone.         2+con   strain:Tu|isolate:N/A|breed:N/A|cultivar:N/A|ecotype:N/A|age:2 96h|dev stage:larvae|sex:male and female|tissue:larvae|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : control group con 2 con 2 The final library was amplified with phi29 to make DNA nanoballs DNB with more than 300 copies of one molecular.     RNA-Seq TRANSCRIPTOMIC Oligo-dT SINGLE BGISEQ BGISEQ-500   SRP346418     con_2_2.fq.gz fastq 3324287550.0 22161917.0 con 2 2.fq.gz 0:0 1:150 A:848766265;C:812477645;G:798995610;T:864040426;N:7604 0 150     848766265 812477645 798995610 864040426 7604 SRX13151066 SRS11083372 SRA1330365 China Agricultural University|College of animal science and technology China Agricultural University 1 0.95548   0.03524   0.70021   0.4867   150   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   China 2021-11-16 Larval Larval Undetermined Undetermined
66983 66983 SRR16959547 SRX13151065 SRS11083371 SRP346418 PRJNA780940 transcriptomics of difenoconazole and dimethomorph on zebrafish embryos PRJNA780940 Other Difenoconazole DIF and dimethomorph DIM are widely used pesticides frequently detected together in environmental samples so the deleterious effects of combined exposure warrant detailed examination. In this study the individual and combined effects of DIM and DIF on conventional developmental parameters hatch rate deformity rate lethality and gene expression were measured in embryonic zebrafish. Both DIF and DIM interfered with normal zebrafish embryo development and the most sensitive toxicity index for both was 96 hpf deformity rate BMDL10 values of 0.30 and 1.10 mg/L respectively. The combination of DIF and DIM had mainly synergistic deleterious effects on 96 hpf deformity and mortality rates. Transcriptome analysis showed that these compounds markedly downregulated expression of mcm family genes cdk1 and cdc20 thereby potentially disrupting DNA replication and cell cycle progression. Enhanced surveillance for this pesticide combination is recommended as simultaneous environmental exposure may be substantially more harmful than exposure to either compound alone.         1+con   strain:Tu|isolate:N/A|breed:N/A|cultivar:N/A|ecotype:N/A|age:1 96h|dev stage:larvae|sex:male and female|tissue:larvae|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio : control group con 1 con 1 The final library was amplified with phi29 to make DNA nanoballs DNB with more than 300 copies of one molecular.     RNA-Seq TRANSCRIPTOMIC Oligo-dT SINGLE BGISEQ BGISEQ-500   SRP346418     con_1_1.fq.gz fastq 3330724500.0 22204830.0 con 1 1.fq.gz 0:150 1:0 A:896812508;C:762246067;G:774062043;T:897597946;N:5936 150 0     896812508 762246067 774062043 897597946 5936 SRX13151065 SRS11083371 SRA1330365 China Agricultural University|College of animal science and technology China Agricultural University 1 0.94925   0.08711   0.66772   0.48635   150   B   usable mapping rate bgi bgi unknown poly_a unknown bulk unknown unknown   China 2021-11-16 Larval Larval Undetermined Undetermined
71591 71591 SRR21773952 SRX17768899 SRS15295762 SRP400510 PRJNA885753 Danio rerio Raw sequence reads PRJNA885753 Whole Genome Sequencing normal Transcriptome sequencing of zebrafish         ISL 3   strain:AB|breed:fish|age:96 hpf|sex:not applicable|tissue:larvae|replicate:replicate=biological replicate 6|BioSampleModel:Model organism or animal                 RNA seq of zrbrafish ISL 3 ISL 3 NORMAL RNA SEQ OF zebrafish     RNA-Seq TRANSCRIPTOMIC Oligo-dT SINGLE ILLUMINA Illumina NovaSeq 6000   SRP400510     L1EFH311741--MJ_3.R1.raw.fastq.gz fastq 3636106123.0 24080173.0 L1EFH311741 MJ 3.R1.raw.fastq.gz 0:151 1:0 A:986029307;C:836470528;G:856224433;T:957306917;N:74938 151 0     986029307 836470528 856224433 957306917 74938 SRX17768899 SRS15295762 SRA1510923 Jiangxi Maternal and Child Health Hospital|Oncology Department Jiangxi Maternal and Child Health Hospital 1 0.95201   0.07421   0.72995   0.47689   151   B   usable mapping rate illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2022-10-01 Larval Larval Undetermined Undetermined
71592 71592 SRR21773953 SRX17768898 SRS15295761 SRP400510 PRJNA885753 Danio rerio Raw sequence reads PRJNA885753 Whole Genome Sequencing normal Transcriptome sequencing of zebrafish         ISL 2   strain:AB|breed:fish|age:96 hpf|sex:not applicable|tissue:larvae|replicate:replicate=biological replicate 5|BioSampleModel:Model organism or animal                 RNA seq of zrbrafish ISL 2 ISL 2 NORMAL RNA SEQ OF zebrafish     RNA-Seq TRANSCRIPTOMIC Oligo-dT SINGLE ILLUMINA Illumina NovaSeq 6000   SRP400510     L1EFH311740--MJ_2.R1.raw.fastq.gz fastq 4009114024.0 26550424.0 L1EFH311740 MJ 2.R1.raw.fastq.gz 0:151 1:0 A:1082365671;C:927178308;G:942280451;T:1057206324;N:83270 151 0     1082365671 927178308 942280451 1057206324 83270 SRX17768898 SRS15295761 SRA1510923 Jiangxi Maternal and Child Health Hospital|Oncology Department Jiangxi Maternal and Child Health Hospital 1 0.93235   0.11003   0.67403   0.46386   151   B   usable mapping rate illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2022-10-01 Larval Larval Undetermined Undetermined
71593 71593 SRR21773954 SRX17768897 SRS15295760 SRP400510 PRJNA885753 Danio rerio Raw sequence reads PRJNA885753 Whole Genome Sequencing normal Transcriptome sequencing of zebrafish         ISL 1   strain:AB|breed:fish|age:96 hpf|sex:not applicable|tissue:larvae|replicate:replicate=biological replicate 4|BioSampleModel:Model organism or animal                 RNA seq of zrbrafish ISL 1 ISL 1 NORMAL RNA SEQ OF zebrafish     RNA-Seq TRANSCRIPTOMIC Oligo-dT SINGLE ILLUMINA Illumina NovaSeq 6000   SRP400510     L1EFH311739--MJ_1.R1.raw.fastq.gz fastq 3727259840.0 24683840.0 L1EFH311739 MJ 1.R1.raw.fastq.gz 0:151 1:0 A:1010831433;C:857231895;G:874029152;T:985090673;N:76687 151 0     1010831433 857231895 874029152 985090673 76687 SRX17768897 SRS15295760 SRA1510923 Jiangxi Maternal and Child Health Hospital|Oncology Department Jiangxi Maternal and Child Health Hospital 1 0.93354   0.11328   0.67142   0.46153   151   B   usable mapping rate illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2022-10-01 Larval Larval Undetermined Undetermined
71594 71594 SRR21773955 SRX17768896 SRS15295759 SRP400510 PRJNA885753 Danio rerio Raw sequence reads PRJNA885753 Whole Genome Sequencing normal Transcriptome sequencing of zebrafish         DMSO 3   strain:AB|breed:fish|age:96 hpf|sex:not applicable|tissue:larvae|replicate:replicate=biological replicate 3|BioSampleModel:Model organism or animal                 RNA seq of zrbrafish DMSO 3 DMSO 3 NORMAL RNA SEQ OF zebrafish     RNA-Seq TRANSCRIPTOMIC Oligo-dT SINGLE ILLUMINA Illumina NovaSeq 6000   SRP400510     L1EFH311744--MJC_3.R1.raw.fastq.gz fastq 3786330134.0 25075034.0 L1EFH311744 MJC 3.R1.raw.fastq.gz 0:151 1:0 A:1019293395;C:877604419;G:892262588;T:997091221;N:78511 151 0     1019293395 877604419 892262588 997091221 78511 SRX17768896 SRS15295759 SRA1510923 Jiangxi Maternal and Child Health Hospital|Oncology Department Jiangxi Maternal and Child Health Hospital 1 0.9339   0.10346   0.67243   0.46972   151   B   usable mapping rate illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2022-10-01 Larval Larval Undetermined Undetermined
71595 71595 SRR21773956 SRX17768895 SRS15295758 SRP400510 PRJNA885753 Danio rerio Raw sequence reads PRJNA885753 Whole Genome Sequencing normal Transcriptome sequencing of zebrafish         DMSO 2   strain:AB|breed:fish|age:96 hpf|sex:not applicable|tissue:larvae|replicate:replicate=biological replicate 2|BioSampleModel:Model organism or animal                 RNA seq of zrbrafish DMSO 2 DMSO 2 NORMAL RNA SEQ OF zebrafish     RNA-Seq TRANSCRIPTOMIC Oligo-dT SINGLE ILLUMINA Illumina NovaSeq 6000   SRP400510     L1EFH311743--MJC_2.R1.raw.fastq.gz fastq 3687067868.0 24417668.0 L1EFH311743 MJC 2.R1.raw.fastq.gz 0:151 1:0 A:984951883;C:863074103;G:876086315;T:962879156;N:76411 151 0     984951883 863074103 876086315 962879156 76411 SRX17768895 SRS15295758 SRA1510923 Jiangxi Maternal and Child Health Hospital|Oncology Department Jiangxi Maternal and Child Health Hospital 1 0.93417   0.10418   0.66949   0.46674   151   B   usable mapping rate illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2022-10-01 Larval Larval Undetermined Undetermined
71596 71596 SRR21773957 SRX17768894 SRS15295757 SRP400510 PRJNA885753 Danio rerio Raw sequence reads PRJNA885753 Whole Genome Sequencing normal Transcriptome sequencing of zebrafish         DMSO 1   strain:AB|breed:fish|age:96 hpf|sex:not applicable|tissue:larvae|replicate:replicate=biological replicate 1|BioSampleModel:Model organism or animal                 RNA seq of zrbrafish DMSO 1 DMSO 1 NORMAL RNA SEQ OF zebrafish     RNA-Seq TRANSCRIPTOMIC Oligo-dT SINGLE ILLUMINA Illumina NovaSeq 6000   SRP400510     L1EFH311742--MJC_1.R1.raw.fastq.gz fastq 3606182453.0 23882003.0 L1EFH311742 MJC 1.R1.raw.fastq.gz 0:151 1:0 A:958579858;C:844483137;G:861497670;T:941546853;N:74935 151 0     958579858 844483137 861497670 941546853 74935 SRX17768894 SRS15295757 SRA1510923 Jiangxi Maternal and Child Health Hospital|Oncology Department Jiangxi Maternal and Child Health Hospital 1 0.94042   0.08934   0.68396   0.47261   151   B   usable mapping rate illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2022-10-01 Larval Larval Undetermined Undetermined

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;