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12 rows where experiment.library_layout = "PAIRED", technology = "quartzseq" and tissue_curation_coarse = "Nervous System"

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tissue_curation_coarse 1

  • Nervous System · 12 ✖

tissue_curation 1

technology 1

  • quartzseq · 12 ✖

experiment.platform 1

experiment.library_strategy 1

experiment.library_source 1

experiment.library_selection 1

experiment.library_layout 1

  • PAIRED · 12 ✖

devstage_curation_coarse 1

devstage_curation 1

Link rowid ▼ run.accession experiment.accession sample.accession study.accession bioproject study.title study.alias study.type study.abstract study.attributes study.PMIDs sample.description sample.title sample.alias sample.centername sample.attributes GEOsample.title GEOsample.dataprocessing GEOsample.source GEOsample.treatmentprotocol GEOsample.extractprotocol GEOsample.growthprotocol GEOsample.characteristics GEOsample.accession experiment.title experiment.alias experiment.library_name experiment.design_description experiment.library_construction_protocol experiment.attributes experiment.library_strategy experiment.library_source experiment.library_selection experiment.library_layout experiment.platform experiment.instrument_model experiment.spot_descriptor experiment.study_ref run.title run.attributes run.filename run.semantic_name run.total_bases run.total_spots run.alias run.read_lengths run.base_counts run.r1_length run.r2_length run.r3_length run.r4_length run.Acount run.Ccount run.Gcount run.Tcount run.Ncount run.experiment run.pool_member submission.accession submission.srasource submission.bioprojectsource seqdetective.n_mates seqdetective.mapping_rate.mate1 seqdetective.mapping_rate.mate2 seqdetective.nofeature_rate.mate1 seqdetective.nofeature_rate.mate2 seqdetective.sparsity.mate1 seqdetective.sparsity.mate2 seqdetective.pos_strand_rate.mate1 seqdetective.pos_strand_rate.mate2 seqdetective.readlen.mate1 seqdetective.readlen.mate2 seqdetective.judgement.mate1 seqdetective.judgement.mate2 seqdetective.judgement.reason platform_family instrument_generation read_bias selection_class prep_kit sc_or_bulk tech_class technology tech_variant submission.bioprojectsource.country earliest_date devstage_curation devstage_curation_coarse tissue_curation tissue_curation_coarse
156 156 DRR067143 DRX061087 DRS034141 DRP003275 PRJDB4941 Gene expression profiling of granule cells and Purkinje cells in zebrafish cerebellum DRP003275 Other An RNA seq analysis was performed using zebrafish granule cells Purkinje cells IO neurons and glial cells. The transcriptomes were sequenced using Illumina HiSeq with paired end libraries employing the Quartz seq method for low amount total RNA.       Zebrafish RNA seq for Bergmann glial cells using Tg line SAGFFLF251A sample 2 SAMD00057666   sample name:Zebrafish 251A 02|strain:Tg|biomaterial provider:Bioscience and Biotechnology Center Nagoya University|tissue type:cerebellum|cell type:bergmann glial cells|dev stage:14 dpf|replicate:biological replicate 2                 Illumina HiSeq 1500 paired end sequencing of SAMD00057666 DRX061087 1 1 Quartz seq for low amount total RNA   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 1500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003275 Illumina HiSeq 1500 paired end sequencing of SAMD00057666       2040373922.0 10100861.0 DRR067143 0:101 1:101 A:577691972;C:445051245;G:472607289;T:544962357;N:61059 101 101     577691972 445051245 472607289 544962357 61059 DRX061087 DRS034141 DRA004955 RIKEN_CLST_DBFDI|Phyloinformatics Unit RIKEN CLST 2 0.83407 0.83802 0.12612 0.12666 0.73675 0.74079 0.4948 0.49282 101 101 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown sc single_cell_plate quartzseq   Japan 2016-09-19 Larval Larval Brain Nervous System
157 157 DRR067142 DRX061086 DRS034140 DRP003275 PRJDB4941 Gene expression profiling of granule cells and Purkinje cells in zebrafish cerebellum DRP003275 Other An RNA seq analysis was performed using zebrafish granule cells Purkinje cells IO neurons and glial cells. The transcriptomes were sequenced using Illumina HiSeq with paired end libraries employing the Quartz seq method for low amount total RNA.       Zebrafish RNA seq for Bergmann glial cells using Tg line SAGFFLF251A sample 1 SAMD00057665   sample name:Zebrafish 251A 01|strain:Tg|biomaterial provider:Bioscience and Biotechnology Center Nagoya University|tissue type:cerebellum|cell type:bergmann glial cells|dev stage:14 dpf|replicate:biological replicate 1                 Illumina HiSeq 1500 paired end sequencing of SAMD00057665 DRX061086 1 1 Quartz seq for low amount total RNA   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 1500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003275 Illumina HiSeq 1500 paired end sequencing of SAMD00057665       2033951534.0 10069067.0 DRR067142 0:101 1:101 A:589558269;C:431084184;G:460501802;T:552746498;N:60781 101 101     589558269 431084184 460501802 552746498 60781 DRX061086 DRS034140 DRA004955 RIKEN_CLST_DBFDI|Phyloinformatics Unit RIKEN CLST 2 0.8958 0.90339 0.13764 0.1385 0.72563 0.72865 0.49373 0.49916 101 101 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown sc single_cell_plate quartzseq   Japan 2016-09-19 Larval Larval Brain Nervous System
158 158 DRR067141 DRX061085 DRS034139 DRP003275 PRJDB4941 Gene expression profiling of granule cells and Purkinje cells in zebrafish cerebellum DRP003275 Other An RNA seq analysis was performed using zebrafish granule cells Purkinje cells IO neurons and glial cells. The transcriptomes were sequenced using Illumina HiSeq with paired end libraries employing the Quartz seq method for low amount total RNA.       Zebrafish RNA seq for Purkinje cells using Tg line aldoca:GAP Venus sample 3 SAMD00057664   sample name:Zebrafish aldoca 03|strain:Tg|biomaterial provider:Bioscience and Biotechnology Center Nagoya University|tissue type:cerebellum|cell type:purkinje cells|dev stage:14 dpf|replicate:biological replicate 3                 Illumina HiSeq 1500 paired end sequencing of SAMD00057664 DRX061085 1 1 Quartz seq for low amount total RNA   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 1500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003275 Illumina HiSeq 1500 paired end sequencing of SAMD00057664       1931908608.0 9563904.0 DRR067141 0:101 1:101 A:558444394;C:409856521;G:429168864;T:534380258;N:58571 101 101     558444394 409856521 429168864 534380258 58571 DRX061085 DRS034139 DRA004955 RIKEN_CLST_DBFDI|Phyloinformatics Unit RIKEN CLST 2 0.88632 0.89109 0.15695 0.15773 0.75694 0.7599 0.46875 0.49236 101 101 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown sc single_cell_plate quartzseq   Japan 2016-09-19 Larval Larval Brain Nervous System
159 159 DRR067140 DRX061084 DRS034138 DRP003275 PRJDB4941 Gene expression profiling of granule cells and Purkinje cells in zebrafish cerebellum DRP003275 Other An RNA seq analysis was performed using zebrafish granule cells Purkinje cells IO neurons and glial cells. The transcriptomes were sequenced using Illumina HiSeq with paired end libraries employing the Quartz seq method for low amount total RNA.       Zebrafish RNA seq for Purkinje cells using Tg line aldoca:GAP Venus sample 2 SAMD00057663   sample name:Zebrafish aldoca 02|strain:Tg|biomaterial provider:Bioscience and Biotechnology Center Nagoya University|tissue type:cerebellum|cell type:purkinje cells|dev stage:14 dpf|replicate:biological replicate 2                 Illumina HiSeq 1500 paired end sequencing of SAMD00057663 DRX061084 1 1 Quartz seq for low amount total RNA   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 1500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003275 Illumina HiSeq 1500 paired end sequencing of SAMD00057663       1851108406.0 9163903.0 DRR067140 0:101 1:101 A:537339104;C:390802782;G:416335529;T:506575762;N:55229 101 101     537339104 390802782 416335529 506575762 55229 DRX061084 DRS034138 DRA004955 RIKEN_CLST_DBFDI|Phyloinformatics Unit RIKEN CLST 2 0.9055 0.91341 0.1515 0.15333 0.76495 0.76719 0.49219 0.49012 101 101 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown sc single_cell_plate quartzseq   Japan 2016-09-19 Larval Larval Brain Nervous System
160 160 DRR067139 DRX061083 DRS034137 DRP003275 PRJDB4941 Gene expression profiling of granule cells and Purkinje cells in zebrafish cerebellum DRP003275 Other An RNA seq analysis was performed using zebrafish granule cells Purkinje cells IO neurons and glial cells. The transcriptomes were sequenced using Illumina HiSeq with paired end libraries employing the Quartz seq method for low amount total RNA.       Zebrafish RNA seq for Purkinje cells using Tg line aldoca:GAP Venus sample 1 SAMD00057662   sample name:Zebrafish aldoca 01|strain:Tg|biomaterial provider:Bioscience and Biotechnology Center Nagoya University|tissue type:cerebellum|cell type:purkinje cells|dev stage:14 dpf|replicate:biological replicate 1                 Illumina HiSeq 1500 paired end sequencing of SAMD00057662 DRX061083 1 1 Quartz seq for low amount total RNA   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 1500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003275 Illumina HiSeq 1500 paired end sequencing of SAMD00057662       2000078962.0 9901381.0 DRR067139 0:101 1:101 A:583169141;C:420603631;G:446949308;T:549297272;N:59610 101 101     583169141 420603631 446949308 549297272 59610 DRX061083 DRS034137 DRA004955 RIKEN_CLST_DBFDI|Phyloinformatics Unit RIKEN CLST 2 0.9056 0.90932 0.15092 0.15179 0.76173 0.7654 0.49028 0.49604 101 101 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown sc single_cell_plate quartzseq   Japan 2016-09-19 Larval Larval Brain Nervous System
161 161 DRR067138 DRX061082 DRS034136 DRP003275 PRJDB4941 Gene expression profiling of granule cells and Purkinje cells in zebrafish cerebellum DRP003275 Other An RNA seq analysis was performed using zebrafish granule cells Purkinje cells IO neurons and glial cells. The transcriptomes were sequenced using Illumina HiSeq with paired end libraries employing the Quartz seq method for low amount total RNA.       Zebrafish RNA seq for granule cells using Tg line gSA2AzGFF152B sample 2 SAMD00057661   sample name:Zebrafish 152B 02|strain:Tg|biomaterial provider:Bioscience and Biotechnology Center Nagoya University|tissue type:cerebellum|cell type:granule cells|dev stage:14 dpf|replicate:biological replicate 2                 Illumina HiSeq 1500 paired end sequencing of SAMD00057661 DRX061082 1 1 Quartz seq for low amount total RNA   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 1500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003275 Illumina HiSeq 1500 paired end sequencing of SAMD00057661       1997432156.0 9888278.0 DRR067138 0:101 1:101 A:578466824;C:423038930;G:449779231;T:546086391;N:60780 101 101     578466824 423038930 449779231 546086391 60780 DRX061082 DRS034136 DRA004955 RIKEN_CLST_DBFDI|Phyloinformatics Unit RIKEN CLST 2 0.90322 0.91109 0.1463 0.14811 0.75452 0.75633 0.48303 0.48557 101 101 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown sc single_cell_plate quartzseq   Japan 2016-09-19 Larval Larval Brain Nervous System
162 162 DRR067137 DRX061081 DRS034135 DRP003275 PRJDB4941 Gene expression profiling of granule cells and Purkinje cells in zebrafish cerebellum DRP003275 Other An RNA seq analysis was performed using zebrafish granule cells Purkinje cells IO neurons and glial cells. The transcriptomes were sequenced using Illumina HiSeq with paired end libraries employing the Quartz seq method for low amount total RNA.       Zebrafish RNA seq for granule cells using Tg line gSA2AzGFF152B sample 1 SAMD00057660   sample name:Zebrafish 152B 01|strain:Tg|biomaterial provider:Bioscience and Biotechnology Center Nagoya University|tissue type:cerebellum|cell type:granule cells|dev stage:14 dpf|replicate:biological replicate 1                 Illumina HiSeq 1500 paired end sequencing of SAMD00057660 DRX061081 1 1 Quartz seq for low amount total RNA   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 1500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003275 Illumina HiSeq 1500 paired end sequencing of SAMD00057660       1908437218.0 9447709.0 DRR067137 0:101 1:101 A:552150223;C:401993096;G:427236477;T:527000978;N:56444 101 101     552150223 401993096 427236477 527000978 56444 DRX061081 DRS034135 DRA004955 RIKEN_CLST_DBFDI|Phyloinformatics Unit RIKEN CLST 2 0.90474 0.91043 0.17336 0.17401 0.76108 0.76359 0.483 0.48537 101 101 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown sc single_cell_plate quartzseq   Japan 2016-09-19 Larval Larval Brain Nervous System
163 163 DRR067136 DRX061080 DRS034134 DRP003275 PRJDB4941 Gene expression profiling of granule cells and Purkinje cells in zebrafish cerebellum DRP003275 Other An RNA seq analysis was performed using zebrafish granule cells Purkinje cells IO neurons and glial cells. The transcriptomes were sequenced using Illumina HiSeq with paired end libraries employing the Quartz seq method for low amount total RNA.       Zebrafish RNA seq for Inferior olive nuclei using Tg line hspGFFDMC28C sample 3 SAMD00057659   sample name:Zebrafish 28C 03|strain:Tg|biomaterial provider:Bioscience and Biotechnology Center Nagoya University|tissue type:hindbrain|cell type:inferior olive nuclei|dev stage:14 dpf|replicate:biological replicate 3                 Illumina HiSeq 1500 paired end sequencing of SAMD00057659 DRX061080 1 1 Quartz seq for low amount total RNA   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 1500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003275 Illumina HiSeq 1500 paired end sequencing of SAMD00057659       1982971178.0 9816689.0 DRR067136 0:101 1:101 A:504064758;C:488246993;G:520130333;T:470469799;N:59295 101 101     504064758 488246993 520130333 470469799 59295 DRX061080 DRS034134 DRA004955 RIKEN_CLST_DBFDI|Phyloinformatics Unit RIKEN CLST 2 0.53386 0.54375 0.06072 0.06189 0.76351 0.76641 0.4872 0.48857 101 101 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown sc single_cell_plate quartzseq   Japan 2016-09-19 Larval Larval Brain Nervous System
164 164 DRR067135 DRX061079 DRS034133 DRP003275 PRJDB4941 Gene expression profiling of granule cells and Purkinje cells in zebrafish cerebellum DRP003275 Other An RNA seq analysis was performed using zebrafish granule cells Purkinje cells IO neurons and glial cells. The transcriptomes were sequenced using Illumina HiSeq with paired end libraries employing the Quartz seq method for low amount total RNA.       Zebrafish RNA seq for Inferior olive nuclei using Tg line hspGFFDMC28C sample 2 SAMD00057658   sample name:Zebrafish 28C 02|strain:Tg|biomaterial provider:Bioscience and Biotechnology Center Nagoya University|tissue type:hindbrain|cell type:inferior olive nuclei|dev stage:14 dpf|replicate:biological replicate 2                 Illumina HiSeq 1500 paired end sequencing of SAMD00057658 DRX061079 1 1 Quartz seq for low amount total RNA   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 1500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003275 Illumina HiSeq 1500 paired end sequencing of SAMD00057658       1961048320.0 9708160.0 DRR067135 0:101 1:101 A:557469151;C:424691789;G:455244994;T:523583601;N:58785 101 101     557469151 424691789 455244994 523583601 58785 DRX061079 DRS034133 DRA004955 RIKEN_CLST_DBFDI|Phyloinformatics Unit RIKEN CLST 2 0.84854 0.8526 0.10311 0.1042 0.75227 0.75499 0.49321 0.49435 101 101 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown sc single_cell_plate quartzseq   Japan 2016-09-19 Larval Larval Brain Nervous System
165 165 DRR067134 DRX061078 DRS034132 DRP003275 PRJDB4941 Gene expression profiling of granule cells and Purkinje cells in zebrafish cerebellum DRP003275 Other An RNA seq analysis was performed using zebrafish granule cells Purkinje cells IO neurons and glial cells. The transcriptomes were sequenced using Illumina HiSeq with paired end libraries employing the Quartz seq method for low amount total RNA.       Zebrafish RNA seq for Inferior olive nuclei using Tg line hspGFFDMC28C sample 1 SAMD00057657   sample name:Zebrafish 28C 01|strain:Tg|biomaterial provider:Bioscience and Biotechnology Center Nagoya University|tissue type:hindbrain|cell type:inferior olive nuclei|dev stage:14 dpf|replicate:biological replicate 1                 Illumina HiSeq 1500 paired end sequencing of SAMD00057657 DRX061078 1 1 Quartz seq for low amount total RNA   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 1500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003275 Illumina HiSeq 1500 paired end sequencing of SAMD00057657       1931802760.0 9563380.0 DRR067134 0:101 1:101 A:546501397;C:422500710;G:452200521;T:510543489;N:56643 101 101     546501397 422500710 452200521 510543489 56643 DRX061078 DRS034132 DRA004955 RIKEN_CLST_DBFDI|Phyloinformatics Unit RIKEN CLST 2 0.85439 0.85613 0.09867 0.09897 0.76871 0.77082 0.48943 0.48936 101 101 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown sc single_cell_plate quartzseq   Japan 2016-09-19 Larval Larval Brain Nervous System
166 166 DRR067133 DRX061077 DRS034131 DRP003275 PRJDB4941 Gene expression profiling of granule cells and Purkinje cells in zebrafish cerebellum DRP003275 Other An RNA seq analysis was performed using zebrafish granule cells Purkinje cells IO neurons and glial cells. The transcriptomes were sequenced using Illumina HiSeq with paired end libraries employing the Quartz seq method for low amount total RNA.       Zebrafish RNA seq for eurydendroid cells using Tg line hspzGFFgDMC156A sample 2 SAMD00057656   sample name:Zebrafish 156A 02|strain:Tg|biomaterial provider:Bioscience and Biotechnology Center Nagoya University|tissue type:cerebellum|cell type:eurydendroid cells|dev stage:14 dpf|replicate:biological replicate 2                 Illumina HiSeq 1500 paired end sequencing of SAMD00057656 DRX061077 1 1 Quartz seq for low amount total RNA   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 1500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003275 Illumina HiSeq 1500 paired end sequencing of SAMD00057656       2054289096.0 10169748.0 DRR067133 0:101 1:101 A:563764176;C:464768863;G:497506420;T:528187503;N:62134 101 101     563764176 464768863 497506420 528187503 62134 DRX061077 DRS034131 DRA004955 RIKEN_CLST_DBFDI|Phyloinformatics Unit RIKEN CLST 2 0.69311 0.6968 0.12309 0.12389 0.76428 0.76676 0.48379 0.48227 101 101 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown sc single_cell_plate quartzseq   Japan 2016-09-19 Larval Larval Brain Nervous System
167 167 DRR067132 DRX061076 DRS034130 DRP003275 PRJDB4941 Gene expression profiling of granule cells and Purkinje cells in zebrafish cerebellum DRP003275 Other An RNA seq analysis was performed using zebrafish granule cells Purkinje cells IO neurons and glial cells. The transcriptomes were sequenced using Illumina HiSeq with paired end libraries employing the Quartz seq method for low amount total RNA.       Zebrafish RNA seq for eurydendroid cells using Tg line hspzGFFgDMC156A sample 1 SAMD00057655   sample name:Zebrafish 156A 01|strain:Tg|biomaterial provider:Bioscience and Biotechnology Center Nagoya University|tissue type:cerebellum|cell type:eurydendroid cells|dev stage:14 dpf|replicate:biological replicate 1                 Illumina HiSeq 1500 paired end sequencing of SAMD00057655 DRX061076 1 1 Quartz seq for low amount total RNA   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 1500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003275 Illumina HiSeq 1500 paired end sequencing of SAMD00057655       2152665722.0 10656761.0 DRR067132 0:101 1:101 A:585252781;C:495382257;G:522677749;T:549287359;N:65576 101 101     585252781 495382257 522677749 549287359 65576 DRX061076 DRS034130 DRA004955 RIKEN_CLST_DBFDI|Phyloinformatics Unit RIKEN CLST 2 0.67771 0.68253 0.12949 0.1303 0.77216 0.77542 0.4951 0.49452 101 101 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown sc single_cell_plate quartzseq   Japan 2016-09-19 Larval Larval Brain Nervous System

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;